From ac9b55e42eec17b677b308d9fb6b4272d1fc0dfd Mon Sep 17 00:00:00 2001 From: tobias <tobias@5a81b35b-ba03-0410-adc8-b2c5c5119f08> Date: Tue, 7 Sep 2010 12:43:47 +0000 Subject: [PATCH] allow sequence strings to be used in clustalw git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2693 5a81b35b-ba03-0410-adc8-b2c5c5119f08 --- modules/bindings/pymod/clustalw.py | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/modules/bindings/pymod/clustalw.py b/modules/bindings/pymod/clustalw.py index c8221fb62..455481beb 100644 --- a/modules/bindings/pymod/clustalw.py +++ b/modules/bindings/pymod/clustalw.py @@ -12,6 +12,12 @@ def ClustalW(seq1, seq2=None, clustalw=None, keep_files=False): seq_list=seq.CreateSequenceList() seq_list.AddSequence(seq1) seq_list.AddSequence(seq2) + elif isinstance(seq1, str) and isinstance(seq2, str): + seq1=CreateSequence("seq1", seq1) + seq2=CreateSequence("seq2", seq2) + seq_list=seq.CreateSequenceList() + seq_list.AddSequence(seq1) + seq_list.AddSequence(seq2) else: LogError("WARNING: Specify at least two Sequences") return -- GitLab