diff --git a/modules/bindings/pymod/CMakeLists.txt b/modules/bindings/pymod/CMakeLists.txt
index afd8a72a912e8cf65481bd0945b28eee34877917..e2207bcda2d35a6a0216e177d7ad878da65ffb73 100644
--- a/modules/bindings/pymod/CMakeLists.txt
+++ b/modules/bindings/pymod/CMakeLists.txt
@@ -8,6 +8,7 @@ dssp.py
clustalw.py
utils.py
naccess.py
+hhblits.py
blast.py
cadscore.py
kclust.py
diff --git a/modules/bindings/pymod/__init__.py b/modules/bindings/pymod/__init__.py
index e7f855fe8211181bcf4ff603b0b6cddb4486df2e..671ae530fb59273ce2c3105ddc95bdd9567ccecd 100644
--- a/modules/bindings/pymod/__init__.py
+++ b/modules/bindings/pymod/__init__.py
@@ -1,9 +1,9 @@
from ost.bindings import dssp
from ost.bindings import msms
+from ost.bindings import hhblits
from ost.bindings import blast
from ost.bindings import tmtools
from ost.bindings import naccess
from ost.bindings import hbplus
from ost.bindings import clustalw
from ost.bindings import cadscore
-
diff --git a/modules/bindings/pymod/hhblits.py b/modules/bindings/pymod/hhblits.py
new file mode 100644
index 0000000000000000000000000000000000000000..7ce8f8d0b9c1f15dc9fe30a6a06f672166672357
--- /dev/null
+++ b/modules/bindings/pymod/hhblits.py
@@ -0,0 +1,564 @@
+'''HHblits wrapper.
+'''
+
+import math
+import subprocess
+import datetime
+import os, re, fcntl
+import shutil
+import tempfile
+try:
+ import hashlib
+except ImportError:
+ import md5 as hashlib
+
+import ost
+from ost import settings, seq
+from ost.bindings import utils
+
+class HHblitsHit:
+ """
+ A hit found by HHblits
+
+ .. attribute:: hit_id
+
+ String identifying the hit
+
+ .. attribute:: aln
+
+ Pairwise alignment containing the aligned part between the query and the
+ target. First sequence is the query, the second sequence the target.
+
+ :type: :class:`ost.seq.AlignmentHandle`
+
+ .. attribute:: evalue
+
+ The E-value of the alignment
+
+ .. attribute:: prob
+
+ The probability of the alignment (between 0 and 100)
+
+ .. attribute:: score
+
+ The alignment score
+ """
+ def __init__(self, hit_id, aln, score, ss_score,evalue, pvalue, prob):
+ self.hit_id=hit_id
+ self.aln=aln
+ self.score=score
+ self.ss_score=ss_score
+ self.evalue=evalue
+ self.prob=prob
+ self.pvalue=pvalue
+
+class HHblitsHeader:
+ def __init__(self):
+ self.query=''
+ self.match_columns=0
+ self.n_eff=0
+ self.searched_hmms=0
+ self.date=None
+ self.command=''
+
+def ParseHeaderLine(line):
+ # First, we seek the start of the identifier, that is, the first whitespace
+ # after the hit number + 1. Since the identifier may contain whitespaces
+ # itself, we cannot split the whole line
+ for i in range(0, len(line)):
+ if line[i].isdigit():
+ break
+ for i in range(i, len(line)):
+ if line[i] == ' ':
+ break
+ assert len(line)-i >= 31 and line[i+1] != ' '
+ #hit_id=line[split_pos+1:35].strip()
+ hit_id = line[i+1:i+31].strip()
+ fields = line[i+32:].split()
+ prob = float(fields[0])
+ evalue = float(fields[1])
+ pvalue = float(fields[2])
+ score = float(fields[3])
+ ss_score = float(fields[4])
+ # cols = int(fields[5])
+ offsets = (int(fields[6].split('-')[0]), int(fields[7].split('-')[0]))
+ #split_pos=line.find(' ', 3)
+ #assert split_pos!=-1 and split_pos<34
+ #prob=float(line[35:40].strip())
+ #evalue=float(line[41:49].strip())
+ #pvalue=float(line[48:57].strip())
+ #score=float(line[56:64].strip())
+ #ss_score=float(line[63:69].strip())
+ #offsets=(int(line[76:79].strip()), int(line[86:89].strip()))
+ return (HHblitsHit(hit_id, None, score, ss_score, evalue, pvalue, prob), offsets)
+
+def ParseHHblitsOutput(output):
+ """
+ Parses the HHblits output and returns a tuple of HHblitsHeader and
+ a list of HHblitsHit instances.
+ """
+ lines=iter(output)
+ def _ParseHeaderSection(lines):
+ value_start_column=14
+ date_pattern='%a %b %d %H:%M:%S %Y'
+ header=HHblitsHeader()
+ line=lines.next()
+ assert line.startswith('Query')
+ header.query=line[value_start_column:].strip()
+ line=lines.next()
+ assert line.startswith('Match_columns')
+ header.match_columns=int(line[value_start_column:].strip())
+
+ line=lines.next()
+ assert line.startswith('No_of_seqs')
+
+ line=lines.next()
+ assert line.startswith('Neff')
+ header.n_eff=float(line[value_start_column:].strip())
+
+ line=lines.next()
+ assert line.startswith('Searched_HMMs')
+ header.searched_hmms=int(line[value_start_column:].strip())
+
+ line=lines.next()
+ assert line.startswith('Date')
+ value=line[value_start_column:].strip()
+ header.date=datetime.datetime.strptime(value, date_pattern)
+
+ line=lines.next()
+ assert line.startswith('Command')
+ header.command=line[value_start_column:].strip()
+
+ line=lines.next()
+ assert len(line.strip())==0
+ return header
+
+ def _ParseTableOfContents(lines):
+ assert lines.next().startswith(' No Hit')
+ hits=[]
+ while True:
+ line=lines.next()
+ if len(line.strip())==0:
+ return hits
+ hits.append(ParseHeaderLine(line))
+ return hits
+ def _ParseResultBody(query_id, hits, lines):
+ entry_index=None
+ query_str=''
+ templ_str=''
+ def _MakeAln(query_id, hit_id, query_string, templ_string,
+ q_offset, t_offset):
+ s1=seq.CreateSequence(query_id, query_string)
+ s1.offset=q_offset-1
+ s2=seq.CreateSequence(hit_id, templ_string)
+ s2.offset=t_offset-1
+ return seq.CreateAlignment(s1, s2)
+ try:
+ while True:
+ line=lines.next()
+ if len(line.strip())==0:
+ continue
+ if line.startswith('Done!'):
+ if len(query_str)>0:
+ hits[entry_index][0].aln=_MakeAln(query_id, hits[entry_index][0].hit_id,
+ query_str, templ_str,
+ *hits[entry_index][1])
+ return [h for h,o in hits]
+ if line.startswith('No '):
+ if len(query_str)>0:
+ hits[entry_index][0].aln=_MakeAln(query_id,
+ hits[entry_index][0].hit_id,
+ query_str, templ_str,
+ *hits[entry_index][1])
+ entry_index=int(line[3:].strip())-1
+ hits[entry_index][0].hit_id=lines.next()[1:].strip()
+ query_str=''
+ templ_str=''
+ # skip the next line. It doesn't contain information we don't
+ # already know
+ lines.next()
+ continue
+ assert entry_index!=None
+ if line[1:].startswith(' Consensus'): continue
+ if line[1:].startswith(' ss_pred'): continue
+ if line[1:].startswith(' ss_conf'): continue
+ if line.startswith('T '):
+
+ end_pos=line.find(' ', 22)
+ assert end_pos!=-1
+ templ_str+=line[22:end_pos]
+ if line.startswith('Q '):
+ end_pos=line.find(' ', 22)
+ assert end_pos!=-1
+ query_str+=line[22:end_pos]
+
+ #hit.aln=seq.CreateAlignment(query_seq, templ_seq)
+ except StopIteration:
+ if len(query_str)>0:
+ hits[entry_index][0].aln=_MakeAln(query_id, hits[entry_index][0].hit_id,
+ query_str, templ_str,
+ *hits[entry_index][1])
+ return [h for h,o in hits]
+ header=_ParseHeaderSection(lines)
+ # parse the table of contents. This is neccessary as some of the properties
+ # (i.e. start of alignment) we need are only given there. From the TOC we
+ # create a list of hits that is then further filled with data when we parse
+ # the actual result body
+ hits=_ParseTableOfContents(lines)
+ return header, _ParseResultBody(header.query, hits, lines)
+
+
+def ParseHHblitsProfile(profile):
+ '''
+ HHblits does not need profiles, it works on the MSA (a3m) file!
+ Do they contain all information?
+
+ Parse secondary structure information and the MSA out of an HHM profile.
+
+ :param profile: Opened file handle holding the profile.
+ :type profile: :class:`file`
+
+ :return: Dictionary containing "ss_pred" (:class:`list`), "ss_conf"
+ (:class:`list`), "msa" (:class:`~ost.seq.AlignmentHandle`) and
+ "consensus" (~ost.seq.SequenceHandle).
+ '''
+ profile_dict = dict()
+ state = 'NONE'
+ pred_seq_txt = ''
+ conf_seq_txt = ''
+ consensus_txt = ''
+ msa_seq = list()
+ msa_head = list()
+ for line in profile:
+ if len(line.rstrip()) == 0:
+ continue
+ if line.rstrip() == '>ss_pred PSIPRED predicted secondary structure':
+ state = 'sspred'
+ continue
+ elif line.rstrip() == '>ss_conf PSIPRED confidence values':
+ state = 'ssconf'
+ continue
+ elif line.rstrip() == '>Consensus':
+ state = 'consensus'
+ continue
+ elif line[0] == '>':
+ if state == 'consensus' or state == 'msa':
+ msa_seq.append('')
+ msa_head.append(line[1:].rstrip())
+ else:
+ raise IOError('Profile file "%s" is missing the "Consensus" section' \
+ % profile.name)
+ state = 'msa'
+ continue
+ elif line[0] == '#':
+ state = 'NONE'
+ continue
+
+ if state == 'sspred':
+ pred_seq_txt += line.rstrip()
+ elif state == 'ssconf':
+ conf_seq_txt += line.rstrip()
+ elif state == 'msa':
+ msa_seq[len(msa_seq)-1] += line.rstrip()
+ elif state == 'consensus':
+ consensus_txt += line.rstrip()
+
+ profile_dict['ss_pred'] = list()
+ profile_dict['ss_conf'] = list()
+ for i in range(0, len(pred_seq_txt)):
+ profile_dict['ss_pred'].append(pred_seq_txt[i])
+ profile_dict['ss_conf'].append(int(conf_seq_txt[i]))
+
+ # post processing
+ # MSA
+ profile_dict['msa'] = None
+ if len(msa_seq):
+ t = msa_seq[0]
+ al=seq.AlignmentList()
+ for i in range(1, len(msa_seq)):
+ qs = ''
+ ts = ''
+ k = 0
+ for c in msa_seq[i]:
+ if c.islower():
+ qs += '-'
+ ts += c.upper()
+ else:
+ qs += t[k]
+ ts += c
+ k += 1
+ nl=seq.CreateAlignment(seq.CreateSequence(msa_head[0], qs),
+ seq.CreateSequence(msa_head[i], ts))
+ al.append(nl)
+ profile_dict['msa'] = seq.alg.MergePairwiseAlignments(al,
+ seq.CreateSequence(msa_head[0], t))
+ #print profile_dict['msa'].ToString(80)
+ # Consensus
+ profile_dict['consensus'] = seq.CreateSequence('Consensus', consensus_txt)
+
+ return profile_dict
+
+def EstimateMemConsumption():
+ """
+ Estimate the memory needed by HHblits. By default it uses not more than 3G.
+ Also for small sequences it already uses quite some memnmory (46AA, 1.48G).
+ And since the memory consumption could depend on the iterative search runs,
+ how many hits are found in each step, we just go with 4G, here.
+ """
+ return 4.0, 'G'
+
+class HHblits:
+ """
+ Initialise a new HHblits "search" for the given query. Query may either
+ be a :class:`ost.seq.SequenceHandle` or a string. In the former case, the
+ query is the actual query sequence, in the latter case, the query is the
+ filename to the file containing the query.
+
+ :param query: Query sequence as file or sequence.
+ :type query: :class:`ost.seq.SequenceHandle` or :class:`str`
+ :param hhsuite_root: Path to the top-level directory of your hhsuite
+ installation.
+ :type hhsuite_root: :class:`str`
+ :param hhblits_bin: Name of the hhblits binary. Will only be used if
+ ``hhsuite_root``/bin/hhblits does not exist.
+ :type hhblits_bin: :class:`str`
+ :param working_dir: Directory for temporary files. Will be created if not
+ present but **not** automatically deleted.
+ :type working_dir: :class:`str`
+ """
+ OUTPUT_PREFIX = 'query_hhblits'
+ def __init__(self, query, hhsuite_root, hhblits_bin=None, working_dir=None):
+ self.query = query
+ self.hhsuite_root = hhsuite_root
+ if os.path.exists(os.path.join(self.hhsuite_root, 'bin/hhblits')):
+ self.bin_dir = os.path.join(self.hhsuite_root, 'bin')
+ self.hhblits_bin = os.path.join(self.hhsuite_root, 'bin/hhblits')
+ else:
+ self.hhblits_bin=settings.Locate('hhblits',
+ explicit_file_name=hhblits_bin)
+ self.bin_dir = os.path.dirname(self.hhblits_bin)
+ self.hhlib_dir = os.path.join(self.hhsuite_root, 'lib', 'hh')
+ if working_dir:
+ self.needs_cleanup = False
+ self.working_dir = working_dir
+ if not os.path.exists(working_dir):
+ os.mkdir(working_dir)
+ if isinstance(query, str):
+ self.filename = os.path.abspath(os.path.join(
+ self.working_dir, os.path.basename(query)))
+ if self.filename != os.path.abspath(query):
+ shutil.copy(query, self.filename)
+ else:
+ self.filename = os.path.join(self.working_dir,
+ '%s.fasta' % HHblits.OUTPUT_PREFIX)
+ ost.io.SaveSequence(query, self.filename)
+ else:
+ self.needs_cleanup = True
+ if isinstance(query, str):
+ self.working_dir = tempfile.mkdtemp()
+ self.filename = os.path.abspath(os.path.join(
+ self.working_dir, os.path.basename(query)))
+ shutil.copy(query, self.filename)
+ else:
+ tmp_dir = utils.TempDirWithFiles((query,))
+ self.working_dir = tmp_dir.dirname
+ self.filename = tmp_dir.files[0]
+
+ def Cleanup(self):
+ """Delete temporary data.
+
+ Delete temporary data if no working dir was given. Controlled by
+ :attr:`needs_cleanup`.
+ """
+ if self.needs_cleanup and os.path.exists(self.working_dir):
+ shutil.rmtree(self.working_dir)
+
+
+ def BuildQueryMSA(self, nrdb, iterations=1, mact=None, cpu=1):
+ """Builds the MSA for the query sequence
+
+ This function directly uses hhblits of hhtools. While in theory it
+ would be possible to do this by PSI-blasting on our own, hhblits is
+ supposed to be faster. Also it is supposed to prevent alignment
+ corruption. The alignment corruption is caused by low-scoring terminal
+ alignments that draw the sequences found by PSI-blast away from the
+ optimum. By removing these low scoring ends, part of the alignment
+ corruption can be suppressed. hhblits does NOT call PSIPRED on the MSA
+ to predict the secondary structure of the query sequence. This is done
+ by addss.pl of hhtools. The predicted secondary structure is stored
+ together with the sequences identified by hhblits.
+
+ :param nrdb: Database to be align against; has to be an hhblits database
+ :type nrdb: :class:`str`
+ :param iterations: Number of hhblits iterations
+ :type iterations: :class:`int`
+ :param mact: '-mact' of hhblits
+ :type mact: :class:`float`
+ :param cpu: '-cpu' of hhblits
+ :type cpu: :class:`int`
+ """
+ a3m_file = '%s.a3m' % os.path.splitext(self.filename)[0]
+ ost.LogInfo('Using hhblits from "%s"' % self.hhsuite_root)
+ full_nrdb = os.path.join(os.path.abspath(os.path.split(nrdb)[0]),
+ os.path.split(nrdb)[1])
+ # create MSA
+ hhblits_cmd='%s -e 0.001 -cpu %d -i %s -oa3m %s -d %s -n %d' % \
+ (self.hhblits_bin, cpu, self.filename, a3m_file, full_nrdb,
+ iterations)
+ if mact:
+ hhblits_cmd += '-mact %f' % mact
+ job = subprocess.Popen(hhblits_cmd, shell=True, cwd=self.working_dir,
+ stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+ sout, serr = job.communicate()
+ #lines = sout.splitlines()
+ #for l in lines:
+ # print l.strip()
+ #lines = serr.splitlines()
+ #for l in lines:
+ # print l.strip()
+ if not os.path.exists(a3m_file):
+ ost.LogWarning('Building query profile failed, no output')
+ return a3m_file
+ # add secondary structure annotation
+ addss_cmd = "%s %s" % (os.path.join(self.hhsuite_root,
+ 'lib/hh/scripts/addss.pl'),
+ a3m_file)
+ env = dict(os.environ)
+ env.update({'PERL5LIB' : os.path.join(self.hhsuite_root,
+ 'lib/hh/scripts'),
+ 'HHLIB' : self.hhlib_dir,
+ 'PATH' : '%s:%s' % (os.path.join(self.hhsuite_root, 'bin'),
+ os.environ['PATH'])})
+ job = subprocess.Popen(addss_cmd, shell=True, cwd=self.working_dir,
+ env=env, stdout=subprocess.PIPE,
+ stderr=subprocess.PIPE)
+ sout, serr = job.communicate()
+ lines = sout.splitlines()
+ for l in lines:
+ if 'error' in l.lower():
+ ost.LogWarning('Predicting secondary structure for MSA '+
+ '(%s) failed, on command: %s' % (a3m_file,l))
+ return a3m_file
+ return a3m_file
+
+ def A3MToProfile(self, a3m_file, hhm_file=None):
+ """
+ Converts the A3M alignment file to a hhm profile. If hhm_file is not
+ given, the output file will be set to <file-basename>.hhm.
+ """
+ hhmake = os.path.join(self.bin_dir, 'hhmake')
+ if not hhm_file:
+ hhm_file='%s.hhm' % os.path.splitext(a3m_file)[0]
+ if os.path.exists(hhm_file):
+ return hhm_file
+ ost.LogVerbose('converting %s to %s' % (a3m_file, hhm_file))
+ os.putenv('HHLIB', self.hhlib_dir)
+ if subprocess.call('%s -i %s -o %s' % (hhmake, a3m_file, hhm_file),
+ shell=True):
+ raise IOError('could not convert a3m to hhm file')
+ return hhm_file
+
+
+ def A3MToCS(self, a3m_file, cs_file=None, options={}):
+ """
+ Converts the A3M alignment file to a column state sequence file. If
+ cs_file is not given, the output file will be set to
+ <file-basename>.seq219.
+ :param a3m_file: A3M file to be converted.
+ :type a3m_file: :class:`str`
+ :param cs_file: Output file name (may be omitted)
+ :type cs_file: :class:`str`
+ :param options: dictionary of options to *cstranslate*, must come with the
+ right amount of '-' in front.
+ :type options: :class:`dict`
+ """
+ cstranslate = os.path.join(self.hhlib_dir, 'bin', 'cstranslate')
+ if not cs_file:
+ cs_file = '%s.seq219' % os.path.splitext(a3m_file)[0]
+ if os.path.exists(cs_file):
+ return cs_file
+ o = list()
+ for k, v in options.iteritems():
+ if type(v) == type(True):
+ if v == True:
+ o.append('%s' % str(k))
+ else:
+ o.append('%s %s' % (str(k), str(v)))
+ o = ' '.join(o)
+ cs_cmd = '%s -i %s -o %s %s' % (cstranslate, a3m_file, cs_file, o)
+ ost.LogVerbose('converting %s to %s' % (a3m_file, cs_file))
+ job = subprocess.Popen(cs_cmd, shell=True,
+ stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+ sout, serr = job.communicate()
+ #lines = serr.splitlines()
+ #for l in lines:
+ # print l
+ lines = sout.splitlines()
+ for l in lines:
+ if l in 'Wrote abstract state sequence to %s' % cs_file:
+ return cs_file
+ ost.LogWarning('Creating column state sequence file (%s) failed' % \
+ cs_file)
+
+ def CleanupFailed(self):
+ '''In case something went wrong, call to make sure everything is clean.
+ '''
+ store_needs_cleanup = self.needs_cleanup
+ self.needs_cleanup = True
+ self.Cleanup()
+ self.needs_cleanup = store_needs_cleanup
+
+ def Search(self, a3m_file, database, options={}, prefix=''):
+ """
+ Searches for templates in the given database. Before running the
+ search, the hhm file is copied. This makes it possible to launch
+ several hhblits instances at once. Upon success, the filename of the
+ result file is returned. This file may be parsed with
+ :func:`ParseHHblitsOutput`.
+ """
+ full_db = os.path.join(os.path.abspath(os.path.split(database)[0]),
+ os.path.split(database)[1])
+ full_a3m = os.path.abspath(a3m_file)
+ opts = {'cpu' : 1, # no. of cpus used
+ 'n' : 1} # no. of iterations
+ opts.update(options)
+ o = []
+ f = []
+ for k, v in opts.iteritems():
+ if type(v) == type(True):
+ if v == True:
+ o.append('-%s' % str(k))
+ f.append(str(k))
+ else:
+ o.append('-%s %s' % (str(k), str(v)))
+ f.append('%s%s' % (str(k), str(v)))
+ o = ' '.join(o)
+ f = '_'.join(f)
+ base = os.path.basename(os.path.splitext(a3m_file)[0])
+ hhr_file = '%s%s_%s.hhr' % (prefix, base, f)
+ hhr_file = os.path.join(self.working_dir, hhr_file)
+ search_cmd='%s %s -e 0.001 -Z 10000 -B 10000 -i %s -o %s -d %s'%(
+ self.hhblits_bin,
+ o, full_a3m,
+ hhr_file,
+ full_db)
+ ost.LogInfo('searching %s' % database)
+ ost.LogVerbose(search_cmd)
+ job = subprocess.Popen(search_cmd, shell=True, cwd=self.working_dir,
+ stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+ sout, serr = job.communicate()
+ if job.returncode !=0:
+ lines = sout.splitlines()
+ for l in lines:
+ print l.strip()
+ lines = serr.splitlines()
+ for l in lines:
+ print l.strip()
+ return None
+ return hhr_file
+
+
+__all__= (HHblits)
+
+# LocalWords: HHblits MSA hhblits hhtools PSIPRED addss param nrdb str mact
+# LocalWords: cpu hhm func ParseHHblitsOutput
diff --git a/modules/bindings/tests/CMakeLists.txt b/modules/bindings/tests/CMakeLists.txt
index 7b04104d9d230d61ab27b4c56dce4730bd42f49e..c443de13285adf6a7818926e29d540a258c2580c 100644
--- a/modules/bindings/tests/CMakeLists.txt
+++ b/modules/bindings/tests/CMakeLists.txt
@@ -1,6 +1,7 @@
set(OST_BINDINGS_UNIT_TESTS
test_msms.py
test_clustalw.py
+ test_hhblits.py
test_blast.py
test_kclust.py
)
diff --git a/modules/bindings/tests/test_hhblits.py b/modules/bindings/tests/test_hhblits.py
new file mode 100644
index 0000000000000000000000000000000000000000..5e12ca8781b18b53207707e798a5712df1ffaee9
--- /dev/null
+++ b/modules/bindings/tests/test_hhblits.py
@@ -0,0 +1,276 @@
+''' Unit tests for the HHblits wrapper
+'''
+
+import unittest
+import os
+import sys
+import tempfile
+import shutil
+import filecmp
+
+import ost
+from ost import seq
+from ost.bindings import hhblits
+
+class TestHHblitsBindings(unittest.TestCase):
+ def setUp(self):
+ self.hhroot = os.getenv('EBROOTHHMINSUITE')
+
+ def tearDown(self):
+ if hasattr(self, 'hh'):
+ self.hh.Cleanup()
+ if hasattr(self, 'tmpfile'):
+ os.remove(self.tmpfile)
+
+ def testOSTSequenceNoWDir(self):
+ # OST sequence as input, no working dir should work
+ query_seq = seq.CreateSequence('1AKE.B',
+ 'MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRA'+
+ 'AVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQ'+
+ 'EDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDV'+
+ 'PDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDV'+
+ 'TGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYYYS'+
+ 'KEAEAGNTKYAKVDGTKPVAEVRADLEKILG')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ # this works only as long as utils.TempDirWithFiles() names the first
+ # fasta file seq01.fasta
+ self.assertEqual(self.hh.filename[-11:], 'seq01.fasta')
+
+ def testOSTSequenceWDir(self):
+ # OST sequence as input, with working dir should work
+ query_seq = seq.CreateSequence('1AKE.B',
+ 'MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRA'+
+ 'AVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQ'+
+ 'EDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDV'+
+ 'PDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDV'+
+ 'TGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYYYS'+
+ 'KEAEAGNTKYAKVDGTKPVAEVRADLEKILG')
+ tmpdir = tempfile.mkdtemp()
+ self.hh = hhblits.HHblits(query_seq, self.hhroot, working_dir=tmpdir)
+ self.assertEqual(self.hh.filename, os.path.join(tmpdir,
+ 'query_hhblits.fasta'))
+ self.assertEqual(self.hh.working_dir, tmpdir)
+ self.hh.needs_cleanup = True
+
+ def testFileNoWDir(self):
+ # we have a sequence but no working dir
+ self.hh = hhblits.HHblits('testfiles/seq2.fasta', self.hhroot)
+ self.assertEqual(self.hh.filename[-10:], 'seq2.fasta')
+
+ def testFileWDir(self):
+ # we have a sequence and a working dir
+ tmpdir = tempfile.mkdtemp()
+ self.hh = hhblits.HHblits('testfiles/seq2.fasta', self.hhroot,
+ working_dir=tmpdir)
+ self.assertEqual(self.hh.filename, os.path.join(tmpdir, 'seq2.fasta'))
+ self.assertEqual(self.hh.working_dir, tmpdir)
+ self.hh.needs_cleanup = True
+
+ def testDoCleanup(self):
+ # test that cleanup cleans up
+ tmpdir = tempfile.mkdtemp()
+ self.hh = hhblits.HHblits('testfiles/seq2.fasta', self.hhroot,
+ working_dir=tmpdir)
+ self.assertTrue(os.path.isdir(tmpdir))
+ self.hh.needs_cleanup = True
+ self.hh.Cleanup()
+ self.assertFalse(os.path.isdir(tmpdir))
+
+ def testDoNotCleanup(self):
+ # test that cleanup cleans up
+ tmpdir = tempfile.mkdtemp()
+ self.hh = hhblits.HHblits('testfiles/seq2.fasta', self.hhroot,
+ working_dir=tmpdir)
+ self.assertTrue(os.path.isdir(tmpdir))
+ self.hh.needs_cleanup = False
+ self.hh.Cleanup()
+ self.assertTrue(os.path.isdir(tmpdir))
+ shutil.rmtree(tmpdir)
+ self.assertFalse(os.path.isdir(tmpdir))
+
+ def testCleanupFailed(self):
+ # test that cleanup cleans up
+ tmpdir = tempfile.mkdtemp()
+ self.hh = hhblits.HHblits('testfiles/seq2.fasta', self.hhroot,
+ working_dir=tmpdir)
+ self.assertTrue(os.path.isdir(tmpdir))
+ self.hh.needs_cleanup = False
+ self.hh.CleanupFailed()
+ self.assertFalse(os.path.isdir(tmpdir))
+
+ def testFileNoExists(self):
+ # test on calling with a non-existing fasta file
+ with self.assertRaises(IOError) as ioe:
+ hhblits.HHblits('notthere.fasta', self.hhroot)
+ self.assertEqual(ioe.exception.errno, 2)
+ self.assertEqual(ioe.exception.strerror, 'No such file or directory')
+
+ def testProfile(self):
+ # try to create a search profile
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ a3m = self.hh.BuildQueryMSA('testfiles/hhblitsdb/hhblitsdb')
+ self.assertTrue(filecmp.cmp(a3m, "testfiles/testali.a3m"))
+
+ def testA3mToProfileFileName(self):
+ # test A3mToProfile to work with a given hhmake_file name
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ _, self.tmpfile = tempfile.mkstemp(suffix='.hmm')
+ os.remove(self.tmpfile)
+ hhfile = self.hh.A3MToProfile("testfiles/testali.a3m",
+ hhm_file=self.tmpfile)
+ tfh = open(hhfile)
+ efh = open("testfiles/test.hmm")
+ elst = efh.readlines()
+ tlst = tfh.readlines()
+ self.assertEqual(len(elst), len(tlst))
+ for i in range(0, len(elst)):
+ if not elst[i].startswith(('FILE', 'COM', 'DATE')):
+ self.assertEqual(elst[i], tlst[i])
+
+ def testA3mToProfileWithoutFileName(self):
+ # test A3mToProfile to work without a given hhmake_file name
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ hhfile = self.hh.A3MToProfile("testfiles/testali.a3m")
+ tfh = open(hhfile)
+ efh = open("testfiles/test.hmm")
+ elst = efh.readlines()
+ tlst = tfh.readlines()
+ self.assertEqual(len(elst), len(tlst))
+ for i in range(0, len(elst)):
+ if not elst[i].startswith(('FILE', 'COM', 'DATE')):
+ self.assertEqual(elst[i], tlst[i])
+ os.remove(hhfile)
+
+ def testA3mToProfileWithExistingFile(self):
+ # test A3mToProfile to work with an existing hmm file
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ hhfile = self.hh.A3MToProfile("testfiles/testali.a3m",
+ hhm_file="testfiles/test.hmm")
+ # when the hmm file already exists, its not touched, so files should be
+ # completely equal.
+ self.assertTrue(filecmp.cmp(hhfile, "testfiles/test.hmm"))
+
+ def testA3mToProfileWithoutA3m(self):
+ # test A3mToProfile to fail if we do not have an a3m file.
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ with self.assertRaises(IOError) as ioe:
+ self.hh.A3MToProfile("doesnotexist.a3m")
+ self.assertEqual(ioe.exception.errno, None)
+ self.assertEqual(ioe.exception.message,
+ "could not convert a3m to hhm file")
+
+ def testA3mToCSFileName(self):
+ # test A3mToCS to work with a given hhmake_file name
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ _, self.tmpfile = tempfile.mkstemp(suffix='.seq219')
+ os.remove(self.tmpfile)
+ csfile = self.hh.A3MToCS("testfiles/testali.a3m",
+ cs_file=self.tmpfile, options={'--alphabet' :
+ os.path.join(self.hh.hhlib_dir,
+ 'data',
+ 'cs219.lib')})
+ self.assertTrue(filecmp.cmp(csfile, 'testfiles/test.seq219'))
+
+ def testA3mToCSNoFileName(self):
+ # test A3mToCS to work with a given hhmake_file name
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ csfile = self.hh.A3MToCS("testfiles/testali.a3m",
+ options={'--alphabet' :
+ os.path.join(self.hh.hhlib_dir,
+ 'data',
+ 'cs219.lib')})
+ self.assertTrue(filecmp.cmp(csfile, 'testfiles/test.seq219'))
+
+ def testA3mToCSFileExists(self):
+ # test A3mToCS to work with a given hhmake_file name
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ csfile = self.hh.A3MToCS("testfiles/testali.a3m",
+ cs_file='testfiles/test.seq219',
+ options={'--alphabet' :
+ os.path.join(self.hh.hhlib_dir,
+ 'data',
+ 'cs219.lib')})
+ self.assertTrue(filecmp.cmp(csfile, 'testfiles/test.seq219'))
+
+ def testSearchWorking(self):
+ # successful search
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ search_file = self.hh.Search("testfiles/testali.a3m",
+ 'testfiles/hhblitsdb/hhblitsdb')
+ tfh = open(search_file)
+ efh = open("testfiles/test.hhr")
+ elst = efh.readlines()
+ tlst = tfh.readlines()
+ self.assertEqual(len(elst), len(tlst))
+ for i in range(0, len(elst)):
+ if not elst[i].startswith(('Date', 'Command')):
+ self.assertEqual(elst[i], tlst[i])
+
+ def testSearchNotWorking(self):
+ # successful search
+ query_seq = seq.CreateSequence('Test', 'VLSPADKTNVKAAWGKVGAHAGEYGAEA'+
+ 'LERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVAD'+
+ 'ALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL'+
+ 'LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL'+
+ 'TSKYR')
+ self.hh = hhblits.HHblits(query_seq, self.hhroot)
+ search_file = self.hh.Search("doesnotexist.a3m",
+ 'testfiles/hhblitsdb/hhblitsdb')
+ self.assertEqual(search_file, None)
+
+# search:
+# search with non-existing a3m
+
+if __name__ == "__main__":
+ hhsuite_root_dir = os.getenv('EBROOTHHMINSUITE')
+ if not hhsuite_root_dir:
+ print "No environment variable 'EBROOTHHMINSUITE'. To enable the "+\
+ "unit test, this needs to point to your HHsuite installation."
+ sys.exit(0)
+ from ost import testutils
+ testutils.RunTests()
diff --git a/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb.cs219 b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb.cs219
new file mode 100644
index 0000000000000000000000000000000000000000..2f7449d3cdbbf599635ab0a48a5469c68ed43617
--- /dev/null
+++ b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb.cs219
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index 0000000000000000000000000000000000000000..2ae40c6df2bc9ee6dbfcafebd6bd2da1b878504a
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diff --git a/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_a3m_db b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_a3m_db
new file mode 100644
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diff --git a/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_a3m_db.index b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_a3m_db.index
new file mode 100644
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+19505167af9ebfb7eba762c056361c1f�� � 4510927 480430
+1b2f6c29a7ee470020810a8013596703�� � 4991357 656647
+1d1847456cd583e08ed67aaa11df98f2�� � 5648004 5180
+203cc7f9db11472b54bca3769bfaf8df�� � 5653184 430329
+2136b1cea2992a6bf1cf63cb4e484430�� � 6083513 462614
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+2798277b8842d36de2206ba3ae8863fc�� � 7203073 468469
+2a3d9802bfcbb4c8a6063b33f02f6538�� � 7671542 210213
+2aaa64efe58cc449ac3f69c82cc966f0�� � 7881755 217102
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+c2c32c13af9575e387657a5ea9736806�� � 40127357 141801
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+cb13cb2555c5bacde1dc168618e48f3f�� � 42620321 702103
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+cd06863eb01c4bcc5ae9b1817480cf17�� � 44190809 503963
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+e44a004fd43907d485810413e310dc01�� � 49988061 13494
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+ee520d2fc85e5b54c5cab5b1125d8c3b�� � 51121841 531686
+f038453661ad6048b85e5011b6e6296a�� � 51653527 604262
+f10edaeff439be4afbba7757c8cac254�� � 52257789 61589
+f22915668ca1cb3ce6b2cdc5b2a8d88f�� � 52319378 70781
+f2a896c08302b679f64cd8e52af94835�� � 52390159 9872
+f2afa8933c4998c89a5c39f692e949bb�� � 52400031 426591
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+f72d3b0c4bbb6e49ce2af6496d1b71a0�� � 53784117 562282
+f7a5e37dc7250be9dd8e0efc7b40d3b7�� � 54346399 168005
+f82cb3c7c161ae904b70948cfd869920�� � 54514404 367568
+f9eb38ef6943149426b564b15c282045�� � 54881972 557554
+fb5bff21f8955d17ec9c9ef42e3fe2a1�� � 55439526 11019
+fc94ceafa368716b735a0cc814095abc�� � 55450545 399815
+fdfbd67ee8a6a80e1c49419316279395�� � 55850360 421410
+ff5c81bfb664296a11b43497a69645cc�� � 56271770 7846
diff --git a/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_a3m_db.index.sizes b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_a3m_db.index.sizes
new file mode 100644
index 0000000000000000000000000000000000000000..08839f6bb296e888d311d8ea2f35f7ff82dd3f2d
--- /dev/null
+++ b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_a3m_db.index.sizes
@@ -0,0 +1 @@
+200
diff --git a/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db
new file mode 100644
index 0000000000000000000000000000000000000000..46062f4cfbf25492473cb0c65ec46fe5f605896c
--- /dev/null
+++ b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db
@@ -0,0 +1,100211 @@
+HHsearch 1.5
+NAME 02ae072bdd8d4b3cd3ddea7d7fd6accb
+FAM
+FILE 02ae072bdd8d4b3cd3ddea7d7fd6accb
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:20:57 2013
+LENG 149 match states, 149 columns in multiple alignment
+FILT 113 out of 1150 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
+HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9623369997667899420778616540676589999999999999699999999998939999999999988538845333579998878999999999
+9999786777999999999843554688549999999999825799999
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxkxxsxxxrxxiixlxxxGxsxxxiaxxlgisxxtixrwxkxxxxxGxxxxxxxxxxxxxklsxxxxxxIx
+xxxxxxxxxsxxxixxxlxxxxxxxxxxxxsxstIxrxLxxxxxxxxxx
+>02ae072bdd8d4b3cd3ddea7d7fd6accb
+MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIA
+EYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQPPNQ
+>gi|339493737|ref|YP_004714030.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]gi|339493835|ref|YP_004714128.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]gi|339493891|ref|YP_004714184.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]gi|339494626|ref|YP_004714919.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]gi|338801109|gb|AEJ04941.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]gi|338801207|gb|AEJ05039.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]gi|338801263|gb|AEJ05095.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]gi|338801998|gb|AEJ05830.1| putative transposase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
+----------------------------------REKRSTALRMREQGYTYKAIGEAVGVHPRTIAHWAQVAEHKGEkaaIAGGQrgVRQGDRRSLSSSQ
+EVLIRTLMTDKmPDQlklgfalwTRDAVRELI-RQR---CGFLMPVRTVGEYLKR--------
+>gi|260581060|ref|ZP_05848882.1| conserved hypothetical protein [Haemophilus influenzae RdAW]gi|2833479|sp|Q57066.1|Y1720_HAEIN RecName: Full=Uncharacterized protein HI_1720gi|1574576|gb|AAC23366.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]gi|260092300|gb|EEW76241.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
+---------------------KVGLNNQltkvqffMTK-YNFLFKQQVIEFYLQNdKNSSLTRRHFQLAETTLERWINQFNHSGING--LALLGKKRNYS
+PEFKLNVIQAV-KNGKFSAEAACLHF---G------IANSGVVSQWLQA--------
+>gi|298674136|ref|YP_003725886.1| transposase [Methanohalobium evestigatum Z-7303]gi|298287124|gb|ADI73090.1| transposase [Methanohalobium evestigatum Z-7303]
+------------------ERKELEAIVSKGKHKSQkYQNALILLNCDEGeyqkqkHTNEVVSSVLNIGMRKIDRVKKRFVEDGLdmaLNGKEYERTYEKK
+IDGDMEAHIIALScSDPSQGhsqcSLRLLADKVVELEYI---DSISYESIKRVLKKTNL-----
+>gi|308178742|ref|YP_003918148.1| transposase of ISAar25, IS3 family, IS3 group, orfA [Arthrobacter arilaitensis Re117]gi|307746205|emb|CBT77177.1| transposase of ISAar25, IS3 family, IS3 group, orfA [Arthrobacter arilaitensis Re117]
+------------------------------QKFTPEFRAEAVELVISsQKSLVEVTASLGINEGTLGNWVRAYRT-EH--PE--SEAE---ERGPVEWaQ
+YEKLRKELLEV----------------------------------------
+>gi|313894445|ref|ZP_07828010.1| integrase core domain protein [Veillonella sp. oral taxon 158 str. F0412]gi|313441269|gb|EFR59696.1| integrase core domain protein [Veillonella sp. oral taxon 158 str. F0412]
+----------------------------TNKHLNLEERFYLEKRLLAGDPINTIAKALGRSRTTIYAEKKRGtvvqirqnkavlmyiADCGQLayERTRQ
+GSFNTLkaGSIEPSLSWVENKVRVdkwSLDAAVGYALRK----GLFVRNEMVCTKTLYNYLYQ--------
+>gi|156974440|ref|YP_001445347.1| hypothetical protein VIBHAR_02155 [Vibrio harveyi ATCC BAA-1116]gi|156526034|gb|ABU71120.1| hypothetical protein VIBHAR_02155 [Vibrio harveyi ATCC BAA-1116]
+---------------------------------------------------------MLFNNHSI---FGQFGFLSELRNK-----------ATQTMQLI
+EHLTEKTYSHTHQIVAYVKET----FGLDYTVSGMNKWLHHN-------
+>gi|332019769|gb|EGI60232.1| FLJ37770-like protein [Acromyrmex echinatior]
+--------------------------------RSLEQRYAIKFCMRLGKNATETFQMlqeaFKddcISRSQSVMWHKAFKEGREeGADEP-CSGRPtTAR
+PDENVNRVCEVLRSDRRLSIQYVADTL----------NMSTCAVHEIVTENL------
+>gi|340739047|gb|EGR73284.1| InsAB [Escherichia coli O104:H4 str. LB226692]
+-----------------------------YTASQPGTHQKIIDMAHEWRWMPGNCPHYGRWPQHDFTSLKKLRP-QSVTSRIQ-----------------
+-------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+D 2 * * 0 * * * * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+L 3 * * * * * * * * * 0 * * * * * * * * * * 3
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+T 141 2639 * 4771 2844 6462 6451 6241 6351 2768 5102 * 4057 6406 3784 2265 4672 4849 * * 6265 141
+ 25 5867 * 0 * 0 * 9877 1094 1000
+
+K 142 3129 * 4317 5822 5834 * 2129 3814 3200 3551 4943 3822 * 4194 4339 5037 5796 6022 5850 5801 142
+ 36 5362 * 1585 585 * * 9382 1000 0
+
+V 143 4143 * 3018 4458 * 1802 5391 * 4284 2127 * 3618 5241 * * 5466 5226 5238 * * 143
+ 0 * * * * * * 8629 0 0
+
+Q 144 3265 * 4777 4420 4246 * * 2927 2837 2802 4670 4602 * 2935 * * 4586 3436 * * 144
+ 0 * * * * * * 7210 0 0
+
+Q 145 3586 * * 3487 * * * 3780 3834 3521 * * * 2234 2077 * 3716 3798 * * 145
+ 0 * * * * * * 5598 0 0
+
+P 146 2551 * * * * * * * * * * * 655 * 2364 * * * * * 146
+ 0 * * * * * * 3604 0 0
+
+P 147 * * 1050 * * * * * * * * * 952 * * * * * * * 147
+ 0 * * * * * * 1765 0 0
+
+N 148 * * * * * * * * * * * 0 * * * * * * * * 148
+ 0 * * * * * * 1000 0 0
+
+Q 149 * * * * * * * * * * * * * 0 * * * * * * 149
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 049453f6b1ef191ef1f937c85980d483
+FAM
+FILE 049453f6b1ef191ef1f937c85980d483
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:33:30 2013
+LENG 66 match states, 66 columns in multiple alignment
+FILT 20 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 2.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEEECCCHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCEEECCCCEECHHHHHHCCC
+>ss_conf PSIPRED confidence values
+986435888764372155256753242077888989998986466530003887007888843479
+>Consensus
+axxxSVVAxqlIPxnTaLTlxMmxxkVxxPxGipxedixxlVgxqVnxxVxxxxTlmpxmVkxyxx
+>049453f6b1ef191ef1f937c85980d483
+ANQASVVANQLIPINVALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA
+>gi|113886|sp|P12100.1|ANP1_PACBR RecName: Full=Ice-structuring protein AB1; Short=ISP AB1; AltName: Full=Antifreeze peptide AB1gi|226447|prf||1513197A antifreeze peptide AB1
+--TKSVVASQLIPINTALTPAMMKAKEVSPKGIPAEEMSKIVGMQVNRAVNLDETLMPDMVKTYQ-
+>gi|62751049|dbj|BAD95785.1| type III antifreeze protein nfeAFP10 [Zoarces elongatus]
+ANQASVVATQLIPINTALTLVMMKAKVATPMGIPAEDIPRIVSMQVNQAVACGTTLMPGMVKTYTP
+>gi|76262419|gb|ABA41378.1| type III antifreeze protein [Anarhichas minor]
+AHQASIVANQLIPINTALTPIMTKAQVVTPLGIPAEDIPRIIGMQVNRAVALGTTLMPDMVKGYPP
+>gi|76262407|gb|ABA41372.1| type III antifreeze protein [Zoarces americanus]
+ANQESVVATQLIPINTALTPIMMKGKVVTPMGIPFKEMSQIVGKQVNRAVPLGTTIMPEMVKGYAP
+>gi|62751041|dbj|BAD95781.1| type III antifreeze protein nfeAFP6 [Zoarces elongatus]
+AG-ESVVATQLIPINTALTPAMMEGKVTNPSGIPFAEMSQIVGKQVNTPVAKGQTLMPGMVKTYVP
+>gi|62751053|dbj|BAD95787.1| type III antifreeze protein nfeAFP12 [Zoarces elongatus]
+ANQESVVATVLIPINTALTVGMMTTRVVSPTGIPAEDIPRLISMQVNQVVPMGTTLMPDMVKGYAP
+>gi|159163462|pdb|1WVO|A Chain A, Solution Structure Of Rsgi Ruh-029, An Antifreeze Protein Like Domain In Human N-Acetylneuraminic Acid Phosphate Synthase Gene
+---GSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNH--
+>gi|326935208|ref|XP_003213668.1| PREDICTED: sialic acid synthase-like, partial [Meleagris gallopavo]
+---KSVVAKVTIPEGTVLTLDMLTVKVGEPKGFAPETIFDLVGQKAKTTIEEDETITEQAV-----
+>gi|47220009|emb|CAG11542.1| unnamed protein product [Tetraodon nigroviridis]
+---KSVVAKVRIPKGTVLTADMLAVKVAEPMGVKAEEIFELVGKTVMENVEEDESVVPEEAKAWA-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 130 * * * * * * * * * * * * * * 3534 * * * * 1
+ 130 * 3534 * * * * 1687 0 0
+
+N 2 * * * * * 2309 3414 * * * * 721 * * * 3358 * * * * 2
+ 513 * 1740 * * * 0 1680 0 1000
+
+Q 3 * * * * * * * * 2344 * * * * 596 * * 2822 * * * 3
+ 158 * 3271 * * 0 * 1552 0 1159
+
+A 4 2077 * * 2412 * 3928 * * 1417 * * * * 2890 * * * * * * 4
+ 0 * * * * 0 * 2289 0 1000
+
+S 5 * * * * * * * * * * * * * * * 0 * * * * 5
+ 0 * * * * * * 2289 0 0
+
+V 6 * * * * * * * 4358 * * * * * * * * * 72 * * 6
+ 0 * * * * * * 2289 0 0
+
+V 7 * * * * * * * * * * * * * * * * * 0 * * 7
+ 0 * * * * * * 2289 0 0
+
+A 8 0 * * * * * * * * * * * * * * * * * * * 8
+ 0 * * * * * * 2289 0 0
+
+N 9 * * * * * * * * 1418 * * 2235 * * * 4544 1432 * * * 9
+ 0 * * * * * * 2289 0 0
+
+Q 10 * * * * * * * * * * * * * 795 * * * 1240 * * 10
+ 0 * * * * * * 2289 0 0
+
+L 11 * * * * * * * * 2996 676 * * * * 2657 * 3470 * * * 11
+ 0 * * * * * * 2289 0 0
+
+I 12 * * * * * * * 0 * * * * * * * * * * * * 12
+ 0 * * * * * * 2289 0 0
+
+P 13 * * * * * * * * * * * * 0 * * * * * * * 13
+ 0 * * * * * * 2289 0 0
+
+I 14 4001 * * 2251 * * * 908 3299 * 3431 * * * * * * * * * 14
+ 0 * * * * * * 2289 0 0
+
+N 15 * * * * * 1418 * * * * * 676 * * * * * * * * 15
+ 0 * * * * * * 2289 0 0
+
+V 16 * * * * * * * * * * * * * * * * 69 4429 * * 16
+ 0 * * * * * * 2289 0 0
+
+A 17 676 * * * * * * 2996 * * * * * * * * * 2007 * * 17
+ 0 * * * * * * 2289 0 0
+
+L 18 * * * * * * * * * 0 * * * * * * * * * * 18
+ 0 * * * * * * 2289 0 0
+
+T 19 * * * * * * * * * * * * * * * * 0 * * * 19
+ 0 * * * * * * 2289 0 0
+
+L 20 3299 * * * * * * * * 874 3991 * 2056 * * * * 4343 * * 20
+ 0 * * * * * * 2289 0 0
+
+V 21 2538 * 1418 * * 4343 * 2639 * * * * * * * * * 2036 * * 21
+ 0 * * * * * * 2289 0 0
+
+M 22 * * * * * * * * * * 0 * * * * * * * * * 22
+ 0 * * * * * * 2289 0 0
+
+M 23 * * * * * * * 4513 * 1418 907 * * * * * 4358 * * * 23
+ 0 * * * * * * 2289 0 0
+
+R 24 3299 * * 2580 * * * * 1842 * * * * * 3510 * 1456 * * * 24
+ 0 * * * * * * 2289 0 0
+
+S 25 2023 * * * * 2050 * * * * * * * * * 4429 3443 1418 * * 25
+ 0 * * * * * * 2289 0 0
+
+E 26 * * * 2612 * * * * 603 * * * * 3538 3443 * * * * * 26
+ 0 * * * * * * 2289 0 0
+
+V 27 * * * 3622 * * * * * * * * * * * * * 122 * * 27
+ 0 * * * * * * 2289 0 0
+
+V 28 2849 * * * * 1875 * 3449 * * * * * * * * 3080 1400 * * 28
+ 0 * * * * * * 2289 0 0
+
+T 29 * * * 1418 * * * * * * * 2290 * * * 2938 2010 * * 4552 29
+ 0 * * * * * * 2289 0 0
+
+P 30 * * * * * * * * * * * * 0 * * * * * * * 30
+ 0 * * * * * * 2289 0 0
+
+V 31 3669 * * * * * * 4720 1499 4358 2229 * * * * 2952 3443 4429 * * 31
+ 0 * * * * * * 2289 0 0
+
+G 32 * * * * * 0 * * * * * * * * * * * * * * 32
+ 0 * * * * * * 2289 0 0
+
+I 33 * * * * 3470 * * 676 * * * * * * * * * 3299 * 2456 33
+ 0 * * * * * * 2289 0 0
+
+P 34 3470 * * * * * * * 3299 * * * 307 * * * * * * * 34
+ 0 * * * * * * 2289 0 0
+
+A 35 1041 * * * 2050 * * * * * * * 1875 * * * * * * * 35
+ 0 * * * * * * 2289 0 0
+
+E 36 2684 * * 399 * * * * 4757 * * * * * * * * 4354 * * 36
+ 0 * * * * * * 2289 0 0
+
+D 37 * * 1043 1237 * * * * * * * * * * * * 3470 * * * 37
+ 0 * * * * * * 2289 0 0
+
+I 38 4354 * * * * * * 483 4513 * 2384 * * * * * * * * * 38
+ 0 * * * * * * 2289 0 0
+
+P 39 * * * * 1418 * * * * * * * 1550 * * 1814 * * * * 39
+ 0 * * * * * * 2289 0 0
+
+R 40 * * 3470 3299 * 4134 * * 3075 * * 2996 * 2050 1912 * * * * * 40
+ 0 * * * * * * 2289 0 0
+
+L 41 * * * * * * * 1433 * 667 * * * * * * * * * * 41
+ 0 * * * * * * 2289 0 0
+
+V 42 * * * * * * * 3350 * * 4738 * * * * * * 210 * * 42
+ 0 * * * * * * 2289 0 0
+
+S 43 * * * * * 278 * * * * * * * * * 2510 * * * * 43
+ 0 * * * * * * 2289 0 0
+
+M 44 * * * * * * * * 929 4596 1544 * * 3470 * * * * * * 44
+ 0 * * * * * * 2289 0 0
+
+Q 45 * * * * * * * * 1875 * * * * 676 * * 3299 * * * 45
+ 0 * * * * * * 2289 0 0
+
+V 46 3470 * * * * * * * * * * * * * * * * 136 * * 46
+ 0 * * * * * * 2289 0 0
+
+N 47 * * * * * * * * 3470 2456 3299 676 * * * * * * * * 47
+ 0 * * * * * * 2289 0 0
+
+R 48 * * * 3299 * * * * * * * * * 2953 1602 * 2262 2113 * * 48
+ 0 * * * * * * 2289 0 0
+
+A 49 1289 * * * * * * 4354 * * * 3299 3080 * * * 1875 4343 * * 49
+ 0 * * * * * * 2289 0 0
+
+V 50 * * * * * * * 2711 * * * * * * * * * 239 * * 50
+ 0 * * * * * * 2289 0 0
+
+P 51 1784 * * 1418 * * * * * 4596 * 4544 2232 * * * * * * 4705 51
+ 0 * * * * * * 2289 0 0
+
+L 52 * 4749 * 1418 * * * 4596 2290 1995 3443 * * * * * * * * * 52
+ 0 * * * * * * 2289 0 0
+
+G 53 * * 1021 * * 979 * * * * * * * * * * * * * * 53
+ 0 * * * * * * 2289 0 0
+
+T 54 * * 2456 1878 * * * * * * * * * 2283 * * 1556 * * * 54
+ 0 * * * * * * 2289 0 0
+
+T 55 * * * * * * * * * * * * * * * 3299 155 * * * 55
+ 0 * * * * * * 2289 0 0
+
+L 56 * * * * * * * 1756 * 889 * * * * * * * 2608 * * 56
+ 0 * * * * * * 2289 0 0
+
+M 57 * * * * * * * * * 4134 413 * * * * * 3470 3299 * * 57
+ 0 * * * * * * 2289 0 0
+
+P 58 * * * 1875 * * * * * * * * 459 * * * * * * * 58
+ 0 * * * * * * 2289 0 0
+
+D 59 * * 1355 1640 * 3762 * 4354 * * * 3733 * 3470 * * * * * * 59
+ 0 * * * * * * 2289 0 0
+
+M 60 3470 * * 3299 * * * * * 3991 676 * * * * 3066 * * * * 60
+ 0 * * * * * * 2289 0 0
+
+V 61 3299 * * * * * * * * * * * * * * * * 155 * * 61
+ 0 * * * * * * 2289 0 0
+
+K 62 * * 3776 2787 * * * * 355 * * * * * * * * * * * 62
+ 0 * * * * * * 2208 0 0
+
+G 63 3108 * * * 4471 2082 * * * * * 2164 * * * 3725 1718 * * * 63
+ 0 * * * * * * 2208 0 0
+
+Y 64 * * * * * * 2916 * * * * * * * * * * * 2772 472 64
+ 185 4150 3972 1000 1000 * * 2187 1000 0
+
+A 65 860 4057 * 3248 * * * * * * * * 4019 4054 4181 * 4265 4197 * * 65
+ 0 * * * * 0 * 2000 0 1000
+
+A 66 1700 * * * * * * * 2691 3670 * * 1124 * * * * * * * 66
+ 0 * * 0 * * * 1707 0 0
+
+//
+�HHsearch 1.5
+NAME 07725759f4907c8886db21d514cb9b12
+FAM
+FILE 07725759f4907c8886db21d514cb9b12
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:21:39 2013
+LENG 82 match states, 82 columns in multiple alignment
+FILT 122 out of 1045 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCHHHHHHHCCCCCEEEEECCEEEECCHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCEEEEECCCCC
+>ss_conf PSIPRED confidence values
+9885789999976789997999999997360357649784899999759542788988369999999998576578578789
+>Consensus
+xxxxxtxxevxxhxxxxxxwvxixgxVyDvtxfxxxHPgGxxxlxxxxGxDxTxxfxxxxhsxxaxxxlxxxxIGxxxxxxx
+>07725759f4907c8886db21d514cb9b12
+AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHSTDARELSKTFIIGELHPDDR
+>gi|258569831|ref|XP_002543719.1| conserved hypothetical protein [Uncinocarpus reesii 1704]gi|237903989|gb|EEP78390.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
+---LTGTSREAQHRQQ-----LLGGALWKGVRC-------ANIILNLAGKDATEEYDPI-HPSGTLEenLQPEACLGTVDPA--
+>gi|12002125|gb|AAG43192.1|AF108658_1 p5327 [Homo sapiens]gi|119594381|gb|EAW73975.1| fatty acid desaturase 2, isoform CRA_b [Homo sapiens]gi|158261605|dbj|BAF82980.1| unnamed protein product [Homo sapiens]
+--GPFVCVCVLLASIPTPQTPLLQASLPPFHPASAGHP---IT-------GQQDAFRAFHPDLEfVGKFLKPLLIGELAPE--
+>gi|298710828|emb|CBJ26337.1| dopamine beta-monooxygenase, putative [Ectocarpus siliculosus]
+--PIYSVAEFNDKVLNGQSWVLVDGAILDVSEFAQRHPGGRRLIINALGTDITQELlgedlsvghamsfSPHAHSERAWTILRRLVVGYIEEEE-
+>gi|328772499|gb|EGF82537.1| hypothetical protein BATDEDRAFT_34502 [Batrachochytrium dendrobatidis JAM81]
+--IKSQSEVL-qKafRLGQQtv--pWFAAHGRYYFAEDL-mSQH--irdygpgtgqgslaly----qFQQFYGNDVSNLF--------------------
+------
+>gi|302683558|ref|XP_003031460.1| glycosyltransferase family 2 protein [Schizophyllum commune H4-8]gi|300105152|gb|EFI96557.1| glycosyltransferase family 2 protein [Schizophyllum commune H4-8]
+--HVYSTGDVAEHNyddSPDSVYTYIRGEVFNLNRISEIHgRVvsvvDQKTILDnYGGGSSDDIF--------------------------
+>gi|317050963|ref|YP_004112079.1| cytochrome b5 [Desulfurispirillum indicum S5]gi|316946047|gb|ADU65523.1| cytochrome b5 [Desulfurispirillum indicum S5]
+----MEQQKLQEYDGKDGkpAYVAYDGKIYDVST-SRMWKNGVHARVHKAGEDLTEAMKNAPHGAEVLKRFT--EVDSLEG---
+>gi|328772499|gb|EGF82537.1| hypothetical protein BATDEDRAFT_34502 [Batrachochytrium dendrobatidis JAM81]
+---GWTEQAV---ngmS-sNtKRFII-iFD----------------nvyyvspidalqnatfsLtvrNLLSPTPGSDVTAA--wkATraQSGElqqe---
+-ldtaltCLnNIFYVGTVDR---
+>gi|118420981|dbj|BAF37218.1| chitin synthase [Lentinula edodes]gi|119224826|dbj|BAF41220.1| chitin synthase [Lentinula edodes]
+---VHSWDEIQSYASDediEKIWGVYNNNLYDLTDYFYTQDQ-ndnndaylfldSgieTVFKDRSGQGITDSLNTAlgKLNETYRQqnldCLnNVFYIGQ
+TDF---
+>gi|322795632|gb|EFZ18311.1| hypothetical protein SINV_02346 [Solenopsis invicta]
+--SLIRWADLENHNRDGGLWVVVNNNVYDVQDIRNDGSwsPYEVLQRYVVGRDETSAVTqcgaPYSQLSPPRGMMDSCFVGHYC----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 2091 * * * 2030 * * * * * 1915 * * * * 1971 * * * * 1
+ 0 * * * * * * 2499 0 0
+
+V 2 * * * * 4978 * * * 4545 996 * * 4541 2924 3061 3990 * 3907 * * 2
+ 71 4375 * 1000 1000 * * 5192 1000 0
+
+K 3 5548 * 5150 4270 * 4384 4649 5538 2740 * 5511 4050 2422 4787 1976 5241 4779 5832 * * 3
+ 23 * 5960 * * * * 7343 0 0
+
+Y 4 3929 6596 4948 4900 4222 5027 5257 5114 4515 2783 5745 6710 4582 4297 4196 4365 3590 2890 * 3507 4
+ 0 * * * * 0 * 7609 0 1002
+
+Y 5 * * * * 2145 * 6279 2701 * 3132 3948 * * * 6397 4578 6143 4048 3372 2298 5
+ 0 * * * * * * 7768 0 0
+
+T 6 4792 6682 5137 5257 6696 4588 * * 5917 4290 * 6741 5660 6259 3175 2318 1308 5416 * * 6
+ 0 * * * * * * 7798 0 0
+
+L 7 2991 4765 5887 4252 6841 * 6590 3406 5741 3788 3746 6762 3555 4927 3530 4859 3229 4703 3384 * 7
+ 0 * * * * * * 7798 0 0
+
+E 8 2715 5136 3373 2144 * 4049 * * 3911 * * 3652 * 4553 4433 3274 5081 4420 * 5540 8
+ 0 * * * * * * 7798 0 0
+
+E 9 7251 5447 2503 984 * 5434 * * 6983 6256 6064 6502 * 2962 5427 6826 4976 5255 * * 9
+ 0 * * * * * * 7830 0 0
+
+I 10 * * * 6173 3830 * * 2242 * 1805 4463 * 6064 * * * 6256 1582 * 6502 10
+ 28 * 5679 * * * * 7830 0 0
+
+Q 11 1922 * 5569 3337 * 5645 * 5779 3188 4393 * 5071 * 2893 3560 3397 6819 4566 6154 6471 11
+ 0 * * 0 * 770 1274 7781 1033 1122
+
+K 12 4758 * 4668 2450 * 4593 6513 6669 2993 3819 * 3232 * 3110 3073 4007 4218 6927 * 5891 12
+ 37 5294 * 1000 1000 * 0 7821 1136 1000
+
+H 13 3807 7077 6361 4509 5694 * 992 6625 5117 3295 6521 4867 6225 4753 4900 * * * * 3775 13
+ 44 5051 * 512 1742 0 * 7821 1321 1000
+
+N 14 3926 * 3289 4042 5692 6366 * 4540 3672 4239 * 1800 * 4444 4643 3460 4390 4224 * * 14
+ 111 4749 4764 1565 595 * * 7830 1364 0
+
+N 15 3391 6590 6271 4577 5170 2445 * 5107 3021 4544 6786 3478 6229 4590 4609 2846 3611 5845 * * 15
+ 64 4519 * 1585 585 0 * 7744 1433 1280
+
+S 16 4192 * 3340 2532 * 5557 5000 6550 2774 4445 * 4194 3131 4344 3132 4195 5843 6130 * * 16
+ 154 3480 6400 783 1256 * 0 7836 1786 1000
+
+K 17 4326 * 2334 3175 * 1873 5917 * 4589 * * 3186 5290 4142 7216 4330 4529 6785 * 6798 17
+ 125 3590 * 1576 590 1390 694 7805 1786 1125
+
+S 18 4868 * 2303 3925 * 3300 6069 * 3528 6561 * 3906 3595 4760 2759 2976 5479 * * * 18
+ 59 4652 * 1172 846 * 0 7782 1268 1168
+
+T 19 3012 2507 * * 3518 6006 5082 4041 5736 2744 4497 5378 4473 4920 5161 4275 4222 5390 * 4815 19
+ 54 7050 5096 0 * 1050 952 7801 1114 1168
+
+W 20 * 4978 6616 6214 6234 * 5734 4567 6678 3246 5331 * * * 6448 * 5157 3903 1012 2963 20
+ 10 7139 * 2000 415 2054 397 7651 1000 1304
+
+L 21 5065 6674 * * 3667 5547 6694 2217 * 2878 4440 * 5650 * 6942 5937 4524 1537 * 5579 21
+ 26 * 5790 * * 0 * 7647 0 1210
+
+I 22 3270 6096 * * 6437 4178 * 1932 6623 3275 5520 * * 7193 4737 3404 4301 2217 * 6277 22
+ 22 6028 * 0 * 0 * 7798 1173 1154
+
+L 23 4541 6647 * * 3445 * 5458 1605 6936 3628 5900 * * * * 6858 6575 2274 6353 2643 23
+ 0 * * * * * * 7795 0 0
+
+H 24 5024 * 2557 3233 7250 4238 3382 * 2899 4678 * 3068 * 4312 2634 5928 * * * 5861 24
+ 6 * 7990 * * * * 7795 0 0
+
+Y 25 5205 * 3449 5139 * 931 * * 5291 * * 2730 * 4733 4284 5141 5173 * * 7132 25
+ 17 6455 * 1000 1000 * 0 7793 1012 1000
+
+K 26 4825 7410 4359 4859 5631 5063 7342 4183 2250 4193 5904 3507 * 3887 3122 3621 4492 3929 * 5573 26
+ 0 * * * * * 0 7793 0 1000
+
+V 27 4986 * * 5134 * * * 2862 * 3938 * * * * 5532 5495 6762 661 4931 5706 27
+ 0 * * * * * 0 7793 0 1000
+
+Y 28 * 4970 * * 3096 * 4883 5031 6214 3676 * * 4654 * * * 5220 * 5554 720 28
+ 12 * 6959 * * * 0 7793 0 1000
+
+D 29 * 6181 478 5728 6757 * * * 4565 6992 6028 3172 5787 6435 5430 * * * * 6507 29
+ 0 * * * * 909 1097 7782 0 1097
+
+L 30 4219 4077 * * 4797 5487 * 2473 * 1913 6896 * * * * 5532 * 1501 * * 30
+ 45 5030 * 510 1747 * 0 7793 1213 1000
+
+T 31 5042 * 5458 4948 * 5866 5710 6437 4779 6277 5660 4702 6328 4808 6233 1831 1294 6801 * * 31
+ 31 5533 * 3031 188 751 1302 7756 1106 1126
+
+K 32 4517 * 2663 2584 * 3500 7169 * 3319 6018 * 3051 4518 5736 3620 3317 4455 * * 6588 32
+ 45 * 5024 * * * 0 7793 0 1000
+
+F 33 5105 6758 * 6418 1273 4995 6320 5274 6803 4159 * * * * * * * 5062 3233 1915 33
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+
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+ 123 5520 4059 0 * 1866 463 7579 1214 1680
+
+E 35 3415 5075 3669 3796 5624 5552 4461 * 2545 6222 6286 3371 3125 4192 3811 4455 4636 * * 5768 35
+ 58 4658 * 650 1463 1303 750 7513 1261 2048
+
+E 36 4399 * 3286 2981 4601 4742 * 4906 3414 4741 * 4499 * 3396 3653 3592 4053 4452 6560 4011 36
+ 27 5728 * 0 * 544 1671 7586 1066 1603
+
+H 37 5521 * * * 6202 4352 461 * * * * 4722 6767 4785 * 4084 * 6350 4846 * 37
+ 54 5199 6738 0 * * 0 7774 1129 1131
+
+P 38 4757 * 5698 5566 6960 5278 * 6577 4872 6486 * 7021 493 * 6294 3846 6331 * * 5624 38
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+
+G 39 4643 * 3881 5585 * 725 6187 6323 6851 6369 * 5128 5057 5709 6740 3798 4408 6260 * * 39
+ 118 4190 5389 2858 214 * 0 7651 1516 1435
+
+G 40 4299 * 4801 6428 6985 542 * 7129 5765 5526 * * * * 6283 3799 4692 6330 * 5377 40
+ 126 3583 * 2994 194 731 1331 7602 1949 1670
+
+E 41 3041 * 3440 3587 7237 4959 6905 5104 3333 4567 * 4349 3964 3388 3997 2814 4915 5044 * 6861 41
+ 167 3924 4521 1818 481 748 1305 7674 1620 1217
+
+A 42 3173 * 3371 3950 5685 6244 4733 3785 3111 4772 6359 4101 6711 4664 3703 3467 3947 4930 * 4369 42
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+
+V 43 3465 * * 6057 4604 6230 5173 2357 5238 2628 4484 5278 4185 6923 6923 3520 4411 3278 5778 4994 43
+ 54 * 4770 0 * 0 * 7747 1033 1336
+
+L 44 * 5962 * * 3750 * * 1677 6234 1370 4354 6574 * 6325 * * 5458 4095 5524 5510 44
+ 44 5577 6792 1000 1000 1017 984 7666 1130 1272
+
+R 45 4321 7151 5128 4016 4228 4804 * 4933 2664 2548 3859 5465 4658 3869 3956 5432 3946 5124 6954 6260 45
+ 46 6868 5438 3000 193 * 0 7682 1000 1175
+
+A 46 3212 7091 3791 4860 6370 5188 3313 4813 3268 4065 4957 4245 3726 3817 3771 4211 5037 * 6704 4643 46
+ 44 5459 7063 0 * 2449 292 7640 1112 1357
+
+Q 47 3161 6816 5552 6192 2891 4630 3822 6061 6421 3078 6480 4398 * 5190 4552 5915 4885 3977 6308 2335 47
+ 19 * 6223 * * 771 1273 7669 0 1351
+
+A 48 1337 5202 6714 5227 5674 3993 5714 5483 4035 3933 4896 4919 4636 7087 6478 4079 * 3373 * 6720 48
+ 0 * * * * 1414 679 7674 0 1203
+
+G 49 4485 5922 5062 * 6338 480 6090 * 5583 7023 * 3865 5460 * 6138 5013 * * * * 49
+ 18 6338 * 3322 152 * 0 7698 1010 1093
+
+G 50 7340 * * 4568 6749 2936 5863 6090 1876 5085 5617 5177 5460 3179 2423 6074 3901 5766 * 6617 50
+ 36 5338 * 715 1355 0 * 7698 1169 1093
+
+D 51 7064 6244 479 3459 * 5155 * 6707 * * * 4809 6969 * 6339 4108 * 5690 * * 51
+ 0 * * * * * * 7795 0 0
+
+A 52 1649 5024 6244 5581 * 4961 * 2738 * 2959 4594 6995 4941 5121 * 4790 * 2652 * * 52
+ 0 * * * * * * 7795 0 0
+
+T 53 6791 6244 3477 6068 * 5170 * * * * * * * 5169 6575 2180 874 4968 * 6839 53
+ 0 * * * * * * 7795 0 0
+
+A 54 3505 6555 2460 2652 * 6756 5330 * 3720 4404 6575 4086 4459 4185 3569 3859 * 5695 4920 5165 54
+ 0 * * * * * * 7795 0 0
+
+N 55 2196 5797 4999 3383 5504 5889 5297 3861 5711 3392 7072 7147 6449 4049 6147 4155 5643 3744 5011 3226 55
+ 77 5228 5297 0 * * * 7795 1234 0
+
+F 56 * 6592 * 6229 815 * 6805 4883 * 2886 3902 * * 6541 * 6845 5830 6312 4587 3802 56
+ 55 4742 * 2344 316 * 0 7660 1324 1164
+
+E 57 3411 * 2880 2973 4999 * 6166 5618 4309 4775 6013 2640 4879 4709 3645 4513 5489 5978 4985 4362 57
+ 98 3933 * 2570 266 1534 611 7498 1554 1164
+
+A 58 2569 6506 5477 3583 6760 3909 6198 5823 3157 4126 6919 4749 4205 3939 4439 3206 3672 5684 * 5576 58
+ 275 2853 4835 2030 405 * 0 7846 2132 1076
+
+V 59 2937 6415 * * 3402 * 3214 4021 5886 3452 5125 4858 4905 5197 5943 4756 5589 3880 * 2187 59
+ 575 4379 1833 1000 1000 682 1409 7510 1437 1534
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+G 60 3336 * 5058 * 5840 3201 2130 5264 3847 5612 * 4011 2729 4766 4869 4466 5289 4455 * * 60
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+
+H 61 5273 * 5787 * 6314 * 679 5423 3793 5368 6133 5760 5156 4358 5846 4903 5873 * * 5529 61
+ 29 5646 * 1000 1000 494 1787 7614 1092 1188
+
+S 62 6428 5489 3699 7245 6007 4623 4830 * 5036 4400 * 5497 3492 5265 3756 1341 3773 * 5366 6610 62
+ 16 * 6481 * * * 0 7630 0 1000
+
+T 63 4057 6246 4109 3149 * 5615 5167 4932 2687 3808 * 4753 3025 5752 3621 3332 5952 4363 5349 * 63
+ 113 3725 * 666 1435 1307 747 7613 1617 1109
+
+D 64 2769 * 3868 2842 5337 4081 4958 * 3995 6745 * 3096 5817 4712 4055 2773 5574 4905 * 5400 64
+ 64 4532 * 264 2581 798 1235 7616 1304 1116
+
+A 65 1238 6613 * 5146 * 5103 * 4300 6614 4553 4416 * 4409 5842 5943 5007 3394 2965 * 5434 65
+ 19 6247 * 1288 760 * 0 7633 1078 1000
+
+R 66 5448 * 4863 3235 3740 5660 4030 3843 3577 3065 4776 6388 5597 5969 2784 * * 3906 4240 4114 66
+ 21 6102 * 1585 585 * 0 7617 1067 1000
+
+E 67 3691 * 5173 2428 5963 4878 5321 * 2540 4785 5969 3467 6599 3486 3883 3580 4987 6563 * 5244 67
+ 158 3268 * 1587 584 0 * 7617 1944 1000
+
+L 68 * 3972 * 5193 3775 6585 * 3167 3904 2480 2675 6253 * 4517 3916 5364 3663 5746 5665 4414 68
+ 17 6390 * 1000 1000 * * 7625 1107 0
+
+S 69 6169 * 6894 * 4567 4951 * 3680 * 778 3016 * 6958 6554 6809 5840 * 5723 5003 5418 69
+ 98 3929 * 339 2255 * * 7625 1509 0
+
+K 70 4554 6794 4123 2279 6626 * 5998 7114 2473 6644 * 3358 3196 3349 3387 4335 6392 * * * 70
+ 75 * 4297 * * * * 7625 0 0
+
+T 71 4959 6967 3906 2664 * 4794 4372 7258 2546 4541 5414 4907 4306 3377 4138 3478 3955 6006 * * 71
+ 39 5222 * 0 * 1468 647 7546 1109 1321
+
+F 72 5743 4915 * * 1961 * 4340 * 5148 2290 4403 6736 6197 6290 5818 6603 * * 5066 1897 72
+ 0 * * * * 0 * 7540 0 1173
+
+I 73 3978 3627 * 5579 4740 6956 4175 3974 2964 3306 * * 6454 5908 2685 5589 4118 4655 * 2843 73
+ 11 7042 * 0 * * * 7568 1002 0
+
+I 74 6335 5843 6394 * 5433 * 6542 1131 6454 3460 5776 * * * * * 6854 1629 * 6034 74
+ 29 5644 * 3347 149 * * 7568 1067 0
+
+G 75 3758 * 4824 * * 284 * * 6173 6297 * * * 6081 6279 * * 6055 * * 75
+ 0 * * * * * * 7560 0 0
+
+E 76 5653 * 4837 3046 6836 * 4881 3972 2652 6547 5541 4014 4753 4974 3044 6780 3561 3421 * 3521 76
+ 13 6798 * 0 * * * 7582 1000 0
+
+L 77 6219 6397 * 5102 5470 * * 2277 * 1622 5325 * * 6016 * 5803 4255 2569 * 3152 77
+ 43 5090 * 553 1652 * * 7488 1129 0
+
+H 78 2977 4364 2184 3675 * * 5148 5667 3401 5028 4585 4774 6780 3982 4565 4199 5544 3572 * * 78
+ 20 6165 * 0 * * * 7410 1000 0
+
+P 79 4245 * 3548 2947 4509 5064 5006 * 4805 6383 * 5761 1877 6115 3534 4349 4440 5103 * 3973 79
+ 0 * * * * * * 7043 0 0
+
+D 80 2918 * 1953 1951 * 3951 5481 * * 5149 * 3836 * 5212 5231 3463 5561 * * * 80
+ 0 * * * * * * 6170 0 0
+
+D 81 * * 1245 1959 * 4274 * * 4328 * * 3809 4381 * * 3320 * * * * 81
+ 0 * * * * * * 5023 0 0
+
+R 82 * * * * * * * * 2707 * * * * 2719 525 * * * * * 82
+ 0 * * 0 * * * 3269 0 0
+
+//
+�HHsearch 1.5
+NAME 07e9709ec97fb9c893c6efa6db9e811b
+FAM
+FILE 07e9709ec97fb9c893c6efa6db9e811b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:49:30 2013
+LENG 224 match states, 224 columns in multiple alignment
+FILT 204 out of 1141 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCHHHHHH
+HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
+EECCCCCCCCCHHHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9099997189998789999999999998799089985512476544677650358999986256754356661575377775578775045231999999
+9999853599999979885430356778999999864995899956756599999999999982899779999954788606899999999986099689
+985787899999999998664479
+>Consensus
+mxxixvxsxkggvGKTtvaxxLaxxLxxxgxkVxxxdpxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxlxx
+xlxxlxxxyDxviIDxxxxlxxxxxxxxxxxxiaxxxxxxvilVxxxxxxxxxxxxxxxxxlxxxxxxxxgvVxNxxxxxxxxxxxxxxxixxxxxxxxl
+xxIpxxxxxxxxxxxxxxlxxxxx
+>07e9709ec97fb9c893c6efa6db9e811b
+SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSA
+GLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL
+GEIPWLAENPENAATGKYINLALL
+>gi|15616795|ref|NP_240007.1| phosphate acetyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]gi|11133754|sp|P57273.1|PTA_BUCAI RecName: Full=Phosphate acetyltransferase; AltName: Full=Phosphotransacetylasegi|25321713|pir||E84950 phosphate acetyltransferase (EC 2.3.1.8) [imported] - Buchnera sp. (strain APS)gi|10038858|dbj|BAB12893.1| phosphate acetyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
+-RIIMLIPLDKDIGLTSIGLSIIYFFYQKKIKKKSVQSILY--FSC--TQNSSNsTSHVINKYF-SKIV--HTVDYIDF--SKVLFNS-PEYSFLLNKVI
+DEHYNN-KfLRELILIEGIKNNYCIN-SEEMNYDISQNLNAEVIFIANLENsspEyIKNKEKKINFFLKQkKYKNILGVIFNQINspflenkydfiKKLI
+VLKKiknETKTIvpKKIlknNFFSIIACIPWN-RNivtTRVIDLFNFLNIQ--
+>gi|218282221|ref|ZP_03488520.1| hypothetical protein EUBIFOR_01102 [Eubacterium biforme DSM 3989]gi|218216759|gb|EEC90297.1| hypothetical protein EUBIFOR_01102 [Eubacterium biforme DSM 3989]
+-QVITCVSTVPNEGKSTIACNLARIMAAKYKNVLLidcdlRNASVHKTLHISNR--SGLTNIISEFqeglsinS-YEgvqqVQYDggqTLTV-ITAGHRV
+PNPSEVLG-----SKRMGRFLEQARKEFGYIIIDSP-----PMAVASDTIPLSNVSD-GVLYVVDAKSSDKRRVKTAINDLKRNGGHVIGVVLNKVDM--
+-------------------------------------------
+>gi|325188235|emb|CCA22775.1| phosphate acetyltransferase putative [Albugo laibachii Nc14]
+-QRLYLTSTDYVPHTAPLLLGLASVLEQKYGRIGYFRPILPTRKS---APIDHHVPLMQKLLGLE-PHEKKPLYAVtsEEAV--DYCL-RNQQDQLIDRV
+LFTLEKAQEEHDFMIIEGSAFPSHETNsvSWQLHKQIANALGARVVLCMDAGTpdfpssdsELIdaivIRALLGREQAEADRVGYFGTLINRVGTSdPSA
+FALrLEKAFEK-HKLPYLGFLPYD-RIlasRRLNEVADRLGAK--
+>gi|333602914|gb|EGL14339.1| phosphate acetyltransferase [Gardnerella vaginalis 315-A]
+--NVTIISADCAQSRNVVALGVTKALSSH-YPTTVFRPSAKHDDAF------TSE--LIASSNTKPTLEQVIAA------CPCAV--RKNKDTLRGDIVA
+HFNELIsvTNAQGCVIVASDstSVFDPD-LFRFDASVAADLASPVFLSICAEGRDSKQILQTIEaqcaSVSKEYTKVLGVFVTDCKEDL--AKEVKENYA
+QnnN-GTPLW-TLPSI------------------
+>gi|55378027|ref|YP_135877.1| cell division inhibitor MinD-like [Haloarcula marismortui ATCC 43049]gi|55230752|gb|AAV46171.1| cell division inhibitor MinD-like [Haloarcula marismortui ATCC 43049]
+----------------------------------------------------------------------------------------------------
+---------------------------------------RTVLVSAPTRQSLTDTAKTAAIARALDAPPALTVLVGGDG-------S---vdp-SDLLSC
+SGTVHVPSV------------------
+>gi|154290868|ref|XP_001546023.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10]gi|150847185|gb|EDN22378.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10]
+---IMFVGLQ-GAGKTTTCTKLARWYQSRGFKACLV----CA-D----TFRAGAFDQLKQNATKAK----I-PYYGS---------L-TQTD-PAVVAKE
+GVDKFkKEKFEIIIVDTSGRHRQE---DALFQEMVDIQtavKpDQTVMVMDASIGqqAEAQS----KAF-KETADFGAIIITKTDGHASG--GGAISAVA
+ATHTPII------------------------
+>gi|153003842|ref|YP_001378167.1| cobyrinic acid ac-diamide synthase [Anaeromyxobacter sp. Fw109-5]gi|152027415|gb|ABS25183.1| Cobyrinic acid ac-diamide synthase [Anaeromyxobacter sp. Fw109-5]
+-RRIAFVNEKGGTCKTTLCVNVAAHLAGRGLRVLVadLDTQGhagKSLGVDVRGISPTIHDLLAGDLPLeavvvRTPVPGLD--LL--PANKELAGFpVA
+vaAAADRAERLARRLDGiPAGAYDAVLIDAPPSVSL-V---TENVLVAA--Y-ELVVPVALTylaLDGCAEIVQSLEAMRAargRAPALRLVVPTLY-RK
+TQLADEILARLRARFPAELSRtVLGWS------------------
+>gi|149240139|ref|XP_001525945.1| hypothetical protein LELG_02503 [Lodderomyces elongisporus NRRL YB-4239]gi|146450068|gb|EDK44324.1| hypothetical protein LELG_02503 [Lodderomyces elongisporus NRRL YB-4239]
+---ILILSGKGGVGKSSVTTQTALTLVNKGFRVGVLDIDLTGPSL-PRMFGVESKQVHQSVHGWVPVEvynsndtklgGSlklMSlGFLIGDRGNSVV--
+-WRGP-KKTAMIKQFLKDVVwsgndgEPLDYLLIDTPPGTSD---EHIAIAEELRYAQpiDGAIIVTTPQQVATADVRKEINFCKKVNFEILGIVENMSG
+ficPYcaecTNIFsSGGGKQMAETLQLAYLGNIPID-PL---------------
+>gi|9971822|gb|AAG10431.1| minD [Tagetes erecta]
+--PYPKPPPIRSVLQYNRKPELAGDTPRV----VAIDAD-VGLRNLDllLGLenrvnytvvevLNGDCRLDQALVR-DKRWSNFELLCISKPRSKL-PLG
+FGGKA--LVWLDALKDRQEGCPDFILIDCPAGIDAGFIT-----AITPA--NEAVLVTTPDITALRDADRVTGLLECDGIRDIKMIVNRVRTDLIRGEDM
+MSvlDVQEMLGLSLLS-DTRG------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 * * * * * * * * * * 383 * * * * 3316 3313 4964 * * 1
+ 108 3797 * 1291 758 * * 6641 1100 0
+
+K 2 * * 6428 6598 * 5639 5099 5952 1794 6896 4292 3754 3853 3782 2183 4860 4185 5048 * 6816 2
+ 40 5756 6841 2766 229 * * 9806 1190 0
+
+R 3 3796 * * * 5497 5312 7119 2152 4859 4184 6196 5561 5799 6080 4083 3079 2768 2658 6807 * 3
+ 11 * 7047 1604 576 0 * 10185 1201 1044
+
+Y 4 7437 6138 * * 3718 * * 1154 * 2172 5580 * * * * 7490 5832 3012 * 3945 4
+ 0 * * 0 * 0 * 10265 1056 1056
+
+F 5 2707 4610 * 6198 3084 5249 * 4820 * 2958 3825 * 6089 7295 * 3236 3341 3110 7236 3942 5
+ 0 * * * * * * 10273 0 0
+
+V 6 7349 6168 * * 3137 * * 1650 6795 3241 5079 * * * * 6986 6443 1401 * 7557 6
+ 0 * * * * * * 10273 0 0
+
+T 7 2185 5391 * * 4535 3792 6215 3597 7306 3662 5430 * 5465 * * 3754 2275 3309 6321 5685 7
+ 0 * * * * * * 10273 0 0
+
+G 8 4115 6382 6956 * * 2043 6323 7065 * * 6333 2778 4153 6621 * 1367 4604 7306 * * 8
+ 25 7655 6342 0 * * * 10273 1055 0
+
+T 9 3937 6325 5499 5439 5162 3472 * 4669 6466 4106 * 4701 3249 3160 5696 3501 1960 5768 7596 7225 9
+ 19 * 6227 2807 222 0 * 10246 1001 1207
+
+D 10 4865 * 3468 4339 7510 3680 7267 4771 1124 6024 7383 4287 * 6967 4088 4015 5951 6528 6355 * 10
+ 24 7410 6550 1000 1000 0 * 10272 1000 1140
+
+T 11 6413 6295 7069 5461 7518 1022 6985 5528 4666 6972 6223 6018 3119 4961 5551 3558 3644 * * 6931 11
+ 0 * * * * 1216 812 10259 0 1165
+
+E 12 5092 * 3665 4389 5664 761 5588 * 6213 * 5721 4093 * 7402 5827 3663 7450 6937 * 7360 12
+ 0 * * * * 0 * 10277 0 1046
+
+V 13 3596 4670 6471 3600 7465 6990 * 4291 6390 6375 * 6299 6263 * 6025 2777 3428 1266 * * 13
+ 0 * * * * * * 10284 0 0
+
+G 14 7616 * 7086 6297 * 206 5968 * * 5620 7531 6967 * * * 5023 5185 * * * 14
+ 0 * * * * * * 10284 0 0
+
+K 15 7086 7496 * * * * * 7337 265 4862 * 6997 * 5877 4626 7287 5283 5904 * * 15
+ 0 * * * * * * 10284 0 0
+
+T 16 5029 * 7220 7310 7337 * * * 6575 * 6206 6303 * * 5737 1630 829 * * 6808 16
+ 0 * * * * * * 10284 0 0
+
+V 17 4420 7470 * 6607 4024 6983 5884 4983 7375 4826 5793 4513 5968 7147 * 2975 1130 3687 7302 5313 17
+ 0 * * * * * * 10284 0 0
+
+A 18 4092 5731 * * 4708 * * 2461 * 2199 5694 7375 * * 5967 4401 3145 1820 * * 18
+ 10 7220 * 1000 1000 * * 10284 1055 0
+
+S 19 1310 4402 * 5896 * 6862 * 5547 6808 4785 5760 * * * 7147 2493 2205 4736 * * 19
+ 0 * * * * * * 10284 0 0
+
+C 20 2509 4626 6359 6988 4627 5645 * 4011 5090 2061 4652 6269 6835 5826 5272 4450 3211 3227 7212 * 20
+ 9 * 7289 * * * * 10284 0 0
+
+A 21 3116 7702 * 5142 7614 2570 4031 6315 5769 4345 7655 1521 * 4729 5855 3992 5104 5753 * 5793 21
+ 0 * * 0 * 0 * 10277 1056 1056
+
+L 22 6460 * * 7519 5469 * * 2640 * 670 4867 * * * * * 4871 3712 * 5206 22
+ 24 6583 7319 0 * * * 10287 1120 0
+
+L 23 840 5059 * 6319 * 3187 * 5083 7387 4120 4716 * * * * 4132 5826 3586 * * 23
+ 7 * 7718 * * * 0 10270 0 1022
+
+Q 24 3075 6464 5878 4212 5753 4214 3817 4513 4281 4314 5754 5790 8080 4256 3396 4306 4120 3435 4732 3568 24
+ 0 * * 0 * 0 * 10263 1046 1180
+
+A 25 1984 4939 6124 4342 5334 4179 4991 4120 5921 3399 4899 * * 5474 5036 3350 4419 4024 7802 3766 25
+ 0 * * * * * * 10287 0 0
+
+A 26 3474 5874 * * 3012 * * 4989 6340 709 4420 * * * 7554 6419 6836 5979 7674 5643 26
+ 39 7510 5582 0 * * * 10287 1000 0
+
+K 27 1512 7224 7434 3984 6358 5196 5736 * 3850 4066 7129 5826 6361 3903 3939 3441 3816 4644 * 6112 27
+ 35 5839 7297 1024 976 1227 804 10272 1242 1426
+
+A 28 3807 * 4037 3123 * 5190 6782 5368 2724 3594 4969 4306 * 2798 2699 4465 5611 6377 * * 28
+ 27 * 5745 * * 1865 463 10272 0 1315
+
+A 29 3331 7161 6817 4080 4996 5577 5296 5860 2876 3431 5068 4543 * 3045 2481 4140 4696 5591 * 6291 29
+ 39 5805 6801 1431 669 919 1086 10281 1247 1538
+
+G 30 5094 7690 4281 4520 6355 681 6513 * 4651 5930 * 4368 * 5784 6738 4574 6615 6184 7424 5631 30
+ 40 5585 7233 531 1699 * 0 10264 1334 1368
+
+Y 31 4973 7086 5493 4882 4419 4950 3500 4331 2200 3640 5481 5240 5221 5299 4163 5042 4842 4415 5667 3307 31
+ 85 4219 8171 904 1103 841 1179 10258 1880 1621
+
+R 32 6694 * 4139 6071 * 5609 7201 7697 1536 6484 * 3757 4919 5457 1919 3753 4338 6297 * * 32
+ 36 6431 6260 1435 666 2245 342 10262 1272 1305
+
+T 33 4387 6456 * * 7240 7098 * 3684 6851 5063 * * 5779 * 7239 5084 3212 637 7544 * 33
+ 0 * * * * 1751 508 10255 0 1463
+
+A 34 2929 5055 7288 7233 7282 3008 5365 4295 6864 1527 4833 6490 * 5472 5133 5228 6000 3186 7246 6972 34
+ 0 * * * * * 0 10270 0 1295
+
+G 35 3917 6385 * * 3984 5498 * 2913 7306 1660 5083 * 4890 * * 6061 5659 2511 * 3219 35
+ 393 2069 * 1437 665 * 0 10270 4613 1295
+
+Y 36 4501 5712 * * 2669 5073 6482 2307 * 2245 4374 * * 7090 4523 6501 5526 2715 7547 4792 36
+ 78 4426 7416 2322 322 * 0 10270 1713 1295
+
+K 37 6282 * 937 5876 * 7229 4965 * 1975 7299 * 5833 * 5441 3605 6355 6206 * * * 37
+ 441 3213 2686 1439 664 1071 932 10261 2895 1411
+
+P 38 3133 5792 * * * 4929 4755 5738 5641 3335 5172 5643 1129 6207 5237 4001 5060 6338 6605 * 38
+ 159 4474 4069 0 * 4418 69 10073 1781 3961
+
+V 39 4202 * 2967 * 4616 4324 5716 2954 5910 4229 5028 5205 * 1873 6233 6396 4660 3233 * 7125 39
+ 159 4358 4166 202 2936 * 0 10055 1588 4587
+
+A 40 3416 5492 6933 5057 * 2570 5384 4144 4683 2805 4200 4643 4768 2862 4305 5964 4900 5019 * 6024 40
+ 154 3307 * 1942 435 426 1967 9989 2779 5152
+
+S 41 3299 5875 4880 7046 5319 4864 3585 6109 5210 4201 5997 3242 5283 4098 6439 3033 2345 4306 * 6078 41
+ 51 6557 5372 1197 827 1865 463 10246 1185 2209
+
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+
+T 178 4442 * 2456 3724 6388 3950 4485 6235 3665 5571 6284 3207 3722 4462 3697 3643 5233 5803 * 5821 178
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+P 179 4111 * 4720 3327 * 3684 5741 5125 4093 4404 5484 4338 2022 5393 4049 3532 3899 5805 * * 179
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+H 184 3097 * 4591 3633 3351 4469 4110 5341 4113 3715 * 4272 7938 4180 4651 3369 4095 4348 * 4436 184
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+ 33 6957 6110 0 * 2669 247 10613 1015 1584
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+
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+
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+G 216 1791 4921 4737 3840 4623 3767 * 4777 4002 * 3994 * 4854 4816 4009 4780 * 3314 * 5266 216
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+L 224 * * * * * 1006 * * * 994 * * * * * * * * * * 224
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+
+//
+�HHsearch 1.5
+NAME 0895791d132888554de0d758d179b7c7
+FAM
+FILE 0895791d132888554de0d758d179b7c7
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:07:19 2013
+LENG 246 match states, 246 columns in multiple alignment
+FILT 110 out of 179 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEECCEEEEECCCCHHHHHCCCCCCCC
+CEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
+HHCCCCCCCCCCCEEECCCCCEEEEEEHHHHHHHHHHHHEEECCCC
+>ss_conf PSIPRED confidence values
+9489837997231999999999973758867993620799888877899999838999899999878789999998999899589964552056789987
+3588769999899998738870036307899999999996699078999999999997636652999999986312377898899999974999999999
+8538998658961365489988999667887886530511524789
+>Consensus
+xvxfxxxxatxxxYxxFIxxLRxxlxxxxxxxgipvlxxxxxxxxrxxxVxLxxxxxxxvtLaixxxnlYvvGfxxxxxxyxFxdxxxxxxxxxlfpxxx
+xxxxLxfxgsYxxLxxxagxxrxxixLGxxxLxxAixxLxxxxxxxxarxLlvxIqMvsEAaRFxxIxxxvxxxxxxxxxpxxxxxsLexnWxxlSxxIx
+xaxxxxgxfxxpvxLxxxxxxxxxvxxvxxxxxxxxxxlxxxxxxx
+>0895791d132888554de0d758d179b7c7
+DVSFRLSGADPRSYGMFIKDLRNALPFREKVYNIPLLLPSVSGAGRYLLMHLFNYDGKTITVALDVTNVYIMGYLADTTSYFFNEPAAELASQYVFRDAR
+RKITLPYSGNYERLQIAAGKPREKIPIGLPALDSAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQERAYRDEVPSLATISLENSWSGLSKQIQ
+LAQGNNGIFRTPIVLVDNKGNRVQITNVTSKVVTSNIQLLLNTRNI
+>gi|14578642|gb|AAK68928.1|AF219237_1 ribosome inactivating protein 2 precursor [Dianthus chinensis]
+TFTLDLARPTAAKYSSFLDQIRNNMRDPRLKYCsteIAVIKAPSVA-DKFLRINFQGP-RGTVSLGLARVNLYVVAYFAVDnrnvnRAYYFrtEINSA--
+ELRTVFPEVTvaNQRPLEYTEDYQSIEKNAKITtgdksRKELGLGIDLLISTIDKVNKKvrVVKDEARFLLIGIQMSAEAVRFRYIQNLVTRNFPKKFNS
+DNTVIQYQTSWGKISEAIHS-DCKNGKFNKDYNF-------------------------------
+>gi|391929|dbj|BAA02948.1| tritin [Triticum aestivum]
+TATFNVQASSA-DYVTFINGIRNKLRNPGHsSHNRPVLPPiePNVPPSRWFHIVLKTSPASTgLTLATRADNLYWEGFKSSDGTW-W------ELTPGLI
+PGAT---HVGFGGTYRDLLGDTD-KLTNVALGRQQMADAVTALYGRtkadktsgPKQQQAReAVTTLLLMVHEATRFQTVSGFVAGVLHpKekkSGKIGN
+EMKAQVNGWQDLSEALL--KTDAnappgkapAKF-TPI-------EKMGVRTAEQAAATLGILLFVQV---
+>gi|295701322|ref|YP_003610323.1| ribosome-inactivating protein [Burkholderia sp. CCGE1002]gi|295441645|gb|ADG20812.1| ribosome-inactivating protein [Burkholderia sp. CCGE1002]
+--EFSVDFTSPQKYVQSLGAIRAAMGDAMSLTNIPGnkilyqLRPDASNIVEGVTIEIIGvgrnnsPSNRDVRFVINPSDLYLTGFIVGRIFYRFSDFSD
+T-ASGRVQVNAPRhlvdfTIDMTVDSSYLSLARSAGVSADRTDLSIDRysLMKGyrdlINHVSSTrtINGAEARALLSYATVLSEAVRFRSIQGNFASTa
+LgDDAFTP--YRLSLEDsnrttRWDRLSDEIR--KAHYGAI----KIATHGAAPILLANVRD----------------
+>gi|326520397|dbj|BAK07457.1| predicted protein [Hordeum vulgare subsp. vulgare]
+----------------------------------------------LIVVELQGHNDDKSSVAVQKHDVSVAGFTDGSGQWHA--FPG---LEHLFPAST
+---TLPFGSSYSELIG--GiANLPGVPLGREAMMQAIRVLSAYrpgaDVEPVKRALAAVKVVISEAQRLEPIRKAVNDGWD-gESRVAPEHLPYIEHWDT
+MSYEILRSNRTgkwDGPFTKM----------------------------------
+>gi|254385328|ref|ZP_05000657.1| hypothetical protein SSAG_05020 [Streptomyces sp. Mg1]gi|194344202|gb|EDX25168.1| hypothetical protein SSAG_05020 [Streptomyces sp. Mg1]
+PVSFSVAHASVGDYRLLASSIRSRAALA---QCLPGRAGNEEVSARYLPVRIQLR-GLfielFIELRTQNSVLRITGFRNTFENW---QAPPEGRFRHVr
+davaPPGVHHAEALSFEGEVPALEAAAEVGRTGLSLGRRPMMKAVMWLHRNtDPKCTALGMLVLGEMLCEAASSPVLAQEMSR-----------------
+--------------------------------------------------------
+>gi|157108298|ref|XP_001650164.1| hypothetical protein AaeL_AAEL005004 [Aedes aegypti]gi|108879337|gb|EAT43562.1| hypothetical protein AaeL_AAEL005004 [Aedes aegypti]
+----------DRAYLGFIQNLISALTESDEVYgNIKVTKRK----DGITKVTLKDS-STnsQVGFIYRNRDLYIVGLVVGTTFYIDKEVYDGlgkkipTT
+WkGVINAAN--TVSLSNPFSYNQILPS----GEGTVLQIGKLGDSLTHLTKIgDtSKrsqIMTQHLGPFVVAFSEAIRFPVVAREIQGAIRKatgtvSLS
+knlvrplslghPsertsNhvFTMYSLLLNWSKLSDRVP----------------------------------------------
+>gi|334695920|gb|AEG80717.1| putative ribosome binding protein [Corynebacterium ulcerans 809]
+----------AKEYRDLLARIGNAVSH-PIVNGIGAIPENTATNAR-VDIEVLTSEGNAVTFHMLRRNMYIQAFTLSGTTYITSDAFG----RGLISG--
+--AGLPFSSDYASLGAHNtGNisDPTLFTVGGASLDTLLCNLFHAveNtqnfNRSAARALYAAAILFSEATRFSPSlgrniAQAIENGHPYnLTNADSEM
+I---RNWGQLSNwgraQLQ--SPNQPPFQ------------------------------------
+>gi|47496961|dbj|BAD20031.1| hypothetical protein [Oryza sativa Japonica Group]gi|47497865|dbj|BAD20039.1| hypothetical protein [Oryza sativa Japonica Group]
+-------RGTKNTYASLVSSIVTRITTRAMatVEGKPVCGPSG-----YFEIILFPkpgtqfaakHANGRVRLLFNYQNLYLVAFKVQGKWHKFKDLTPK
+I-----APDYAsikrkkhcEAKNLPFESNYGVRGMAANLaqlkVSRQTPLQIYKM----LSLYDPehnagmvRLSDLQKMLFKTCAVFPEVFRFPLLKKR
+VVYLMgktAdEESTVGEQHTDLFQNWGDCCMALRM--GR-QAFTPMADL-------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+D 1 5393 * 2468 * * * * 4586 4300 * * 3057 2851 * 5360 3714 1541 * * * 1
+ 0 * * * * * * 5094 0 0
+
+V 2 4517 * 5765 6075 5764 * * 2571 * 5585 * * 4494 * * * * 617 * 5701 2
+ 0 * * * * * * 5524 0 0
+
+S 3 * * * 2984 6627 5882 * 5994 5312 * * 3672 5764 * 3762 1769 1670 5188 * * 3
+ 116 6366 3937 1000 1000 * * 5905 1000 0
+
+F 4 * 5640 * * 434 * * 5205 * 2479 * * * * * * * * 5851 5955 4
+ 23 5987 * 0 * 0 * 6014 1355 1279
+
+R 5 5307 * 2142 4264 * * 5246 * 5299 * * 2038 * * 5307 2339 3079 4940 * 5204 5
+ 0 * * * * * * 6069 0 0
+
+L 6 5271 5552 * * * * * 3748 * 1674 6389 * 5697 5897 * * 2425 1662 * 6078 6
+ 22 * 6078 * * * * 6076 0 0
+
+S 7 2874 * 2605 3400 * 3409 5160 6437 4424 4707 * * 5926 4235 5334 3052 3443 3664 * * 7
+ 80 5803 4805 0 * 0 * 6068 1017 1012
+
+G 8 5202 * 4345 4966 4144 2226 4625 * 3920 6407 * 3091 6248 * 3780 3022 2705 * * 5429 8
+ 85 6248 4495 614 1528 0 * 6194 1059 1092
+
+A 9 1201 6500 6083 6098 5972 4107 * 6394 4855 4429 * * 3936 * * 2845 3543 5434 * 4495 9
+ 13 * 6854 * * 992 1008 6256 0 1089
+
+D 10 6265 * 3129 5555 * 4197 * * 5075 * * 4431 * * 5090 2701 981 5552 * 6692 10
+ 36 * 5325 * * * 0 6316 0 1065
+
+P 11 2746 5599 4312 3573 * 3403 6623 5536 3389 * * 5959 3064 4131 4029 3418 6635 3517 5751 6553 11
+ 106 5290 4456 549 1660 0 * 6530 1057 1208
+
+R 12 3766 * 3378 3690 * 2835 * 5818 2936 5795 * 3751 5793 3203 4440 3081 4460 * * 4805 12
+ 14 * 6717 * * 701 1377 6689 0 1209
+
+S 13 4330 * 3376 4729 * 3987 5804 5653 3494 * * 3929 5074 5428 4842 2072 2269 5162 * * 13
+ 17 6401 * 0 * 0 * 6721 1013 1105
+
+Y 14 * * * * 4698 * * * * * * 5704 * 6124 * * * * * 108 14
+ 0 * * * * * * 6762 0 0
+
+G 15 3554 * 6306 4274 6505 4114 * 5908 3979 4687 * 3744 4981 5488 2765 2385 2922 3968 * * 15
+ 0 * * * * * * 6762 0 0
+
+M 16 4270 * 2621 4505 * 5296 6970 * 4924 3670 6741 3957 6566 4047 4862 2219 2401 6220 * * 16
+ 0 * * * * * * 6762 0 0
+
+F 17 5867 * 6269 * 473 * * 5704 * 3050 * * * * * 4564 * 4329 * 5851 17
+ 0 * * * * * * 6762 0 0
+
+I 18 5850 * * * * * * 934 * 1901 3813 * * * * 5704 5034 3824 * * 18
+ 0 * * * * * * 6762 0 0
+
+K 19 3920 * 3793 3383 * 4154 * 6315 2988 * * 2909 * 3464 3927 3148 2693 6141 * * 19
+ 0 * * * * * * 6765 0 0
+
+D 20 3587 * 3388 3371 * 4160 * 6525 3488 6051 * 2771 * 4194 3973 2028 4931 6528 * * 20
+ 0 * * * * * * 6765 0 0
+
+L 21 * * * 6276 4828 * * 2091 * 775 4993 * * * * * * 3517 6145 * 21
+ 0 * * * * * * 6765 0 0
+
+R 22 * * * * * 5878 * 4467 5712 * * * * 5657 215 * 5918 5583 * * 22
+ 0 * * * * * * 6765 0 0
+
+N 23 3618 * 2285 2838 * 4356 * 6642 3598 * * 2668 * 6870 4940 3681 3177 4476 * * 23
+ 19 * 6276 * * * * 6765 0 0
+
+A 24 2415 6130 4742 3174 * 4640 6940 5433 3638 4321 * 4464 * 2982 2348 6001 4550 6552 * 6516 24
+ 22 * 6034 * * 0 * 6756 0 1024
+
+L 25 3273 * 5857 * 5522 * * 3513 * 957 6012 * * * * * * 2062 * * 25
+ 101 5677 4386 0 * * 0 6744 1088 1015
+
+P 26 2093 * 6497 3819 * 3914 * 5516 2975 6062 * * 4472 4774 4483 3194 2639 4129 * * 26
+ 48 5796 6076 1000 1000 404 2033 6693 1030 1355
+
+F 27 4833 * 2483 3314 4572 3959 5815 4455 4285 4251 * 3603 6719 4676 4189 3138 3266 6830 * * 27
+ 94 5416 4648 2585 263 0 * 6702 1055 1113
+
+R 28 3015 * 5060 5378 * 1826 3866 * 3734 * * 4874 2785 5300 4413 4074 4621 6101 5894 6198 28
+ 98 4897 4956 576 1602 0 * 6714 1166 1175
+
+E 29 3223 * 4287 5775 * 3308 4839 * 4286 4795 5943 4095 3380 4560 4678 3367 2344 6911 * 4450 29
+ 116 4044 5937 1503 628 * 0 6681 1289 1143
+
+K 30 * * 3911 2553 5257 6288 3966 5011 4023 2778 4833 4350 3880 6783 4158 4485 4206 3922 * 4647 30
+ 734 1501 4461 874 1138 2044 401 6643 2957 1310
+
+V 31 3457 4679 8473 6894 4081 * 5425 3070 6016 4182 6890 * 4673 6543 3976 2030 * 2309 * 5784 31
+ 125 3586 * 1466 649 0 * 6795 1893 1564
+
+Y 32 4191 3518 5006 3733 7052 5486 1712 * 6695 5695 * 4077 5353 3944 * * 4806 6400 * 2386 32
+ 150 3342 * 729 1335 * * 6864 1672 0
+
+N 33 * 5917 3306 4622 * 969 * * 5826 6831 * 2308 * 7215 * 4518 4604 * * 6473 33
+ 89 4066 * 1368 707 0 * 6862 1349 1000
+
+I 34 * 6268 * * 5588 * 5678 965 4882 2564 4753 5935 * * 3838 6400 5289 3824 * * 34
+ 18 6333 * 1000 1000 * * 6864 1000 0
+
+P 35 5195 * 8667 * 6238 5934 * 5794 4122 6884 * 5245 608 5279 4356 4928 6930 4956 * 5236 35
+ 11 * 7016 * * * * 6864 0 0
+
+L 36 4584 * * * 6943 4493 * 3368 5664 2999 4017 * * * 4864 6857 5787 886 * * 36
+ 21 6108 * 2585 263 * 0 6862 1023 1000
+
+L 37 5777 4336 * * 6328 6227 * 3459 * 779 4216 * * * 5917 5973 3092 6299 * 5928 37
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+//
+�HHsearch 1.5
+NAME 094af3c04fcdf9bf04bb55a97a19581b
+FAM
+FILE 094af3c04fcdf9bf04bb55a97a19581b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:18:37 2013
+LENG 56 match states, 56 columns in multiple alignment
+FILT 164 out of 1036 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCEEEEECCCC
+>ss_conf PSIPRED confidence values
+97413458878878888887871676995832898999998455997588753679
+>Consensus
+xxxxxxxCxxxxxxxCxxxxxPVCGsdgxTYxNxCxlcxxxcxxxxxixixxxGxC
+>094af3c04fcdf9bf04bb55a97a19581b
+LAAVSVDCSEYPKDACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
+>gi|125986399|ref|XP_001356963.1| GA16452 [Drosophila pseudoobscura pseudoobscura]gi|54645289|gb|EAL34029.1| GA16452 [Drosophila pseudoobscura pseudoobscura]
+-----IQADddlsaekdgqtlRKFCP-CPRNYDPVCASNMVTYPNRCEYdCvRREaERRGRNLGFLRSGQC
+>gi|118360802|ref|XP_001013632.1| hypothetical protein TTHERM_00829290 [Tetrahymena thermophila]gi|89295399|gb|EAR93387.1| hypothetical protein TTHERM_00829290 [Tetrahymena thermophila SB210]
+-----GKCEDYHPEAnfcspaenrvenCTNDVDISCAYFnknikcfvppcTIQIENRCQACV-----------------
+>gi|149029561|gb|EDL84759.1| Kazal type serine protease inhibitor 5-like 2 [Rattus norvegicus]
+-----VKLSWFNKTvdPCPGLKQPICGTNFVTYDNPCILCVESF-LGDRLDITTLEDF
+>gi|118371371|ref|XP_001018885.1| hypothetical protein TTHERM_00463880 [Tetrahymena thermophila]gi|89300652|gb|EAR98640.1| hypothetical protein TTHERM_00463880 [Tetrahymena thermophila SB210]
+---QTFLCEENDRSankLCTDIFEPVCGIKqpnlqggkpiRATFSSHCNACK-----DSSVVFVAQGAC
+>gi|148678060|gb|EDL10007.1| mCG127182 [Mus musculus]
+-DPAKLNCESFKQrrkdgdFICPSDTSSVCGTDGKTYRSRCELCAENAKSQNHVDVKSEGEC
+>gi|189235796|ref|XP_970472.2| PREDICTED: similar to Mahya [Tribolium castaneum]
+--------------QCAVHRRLVCGSDGHVYPNHCELHRASCMTATDITVERGVH-
+>gi|296226165|ref|XP_002758813.1| PREDICTED: follistatin-related protein 1-like [Callithrix jacchus]
+--------------SQRKESPPVSASS------------NACLTGSKIQVDYDGHC
+>gi|327279944|ref|XP_003224715.1| PREDICTED: insulin-like growth factor-binding protein 7-like [Anolis carolinensis]
+---------------------------SLSTPTSVIAANIALLqhdlGTICLTMKLKPVI
+>gi|195453090|ref|XP_002073634.1| GK13027 [Drosophila willistoni]gi|194169719|gb|EDW84620.1| GK13027 [Drosophila willistoni]
+-----GSCRHCDAP-CPNIYSPICANRngiNYTIINKCYLERVRCKDPNsSWKIIKDSEC
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+L 48 5954 * * * 4370 * * 1495 * 1762 5940 6690 * * * 6226 5540 2540 5011 5497 48
+ 43 6492 5798 1000 1000 * * 6927 1011 0
+
+T 49 4753 * 3575 2953 6308 5128 4867 5194 3901 4289 7405 5275 6504 3409 3463 3562 2754 4244 * 5992 49
+ 0 * * 0 * 0 * 6947 1060 1060
+
+L 50 5467 6677 * 5920 3322 * 6638 1791 3450 3456 3768 6226 6641 5615 * * 6229 2262 * 5040 50
+ 14 6718 * 0 * * * 6927 1000 0
+
+S 51 2997 * 4098 5052 5620 7062 * 4208 2486 3448 4778 6064 * 5249 4253 5012 3919 2721 * 4177 51
+ 0 * * * * * * 6927 0 0
+
+H 52 4465 6141 4750 * 7232 5017 1636 7051 3244 5437 6726 5400 7070 4794 4064 3119 6121 5304 * 3100 52
+ 0 * * * * * * 6905 0 0
+
+F 53 5779 * 2578 3038 5176 7503 4732 4843 3307 3754 5125 3878 6190 4965 3709 3769 5391 5635 5071 4448 53
+ 0 * * * * * * 6905 0 0
+
+G 54 7172 * 7311 4419 * 388 6625 * 5547 6911 * 5920 5059 * 6752 3939 7263 * 6894 * 54
+ 0 * * * * * * 6905 0 0
+
+K 55 3447 * 4617 2558 6420 * 4705 5144 3265 5702 6061 4620 2455 * 3232 4348 4999 4108 * 6219 55
+ 8 7578 * 1585 585 * * 6905 1000 0
+
+C 56 * 84 * * 6061 * * 5407 * * * * * * * * * * * 5779 56
+ 0 * * 0 * * * 6854 0 0
+
+//
+�HHsearch 1.5
+NAME 09ce670d46e49ba58915a7017daeb51d
+FAM
+FILE 09ce670d46e49ba58915a7017daeb51d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:38:49 2013
+LENG 242 match states, 242 columns in multiple alignment
+FILT 141 out of 795 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEECCCCCCCCCEEEECCEEECCCCEEEECCCCCCCCCCEEEEEECCCEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCCC
+CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCEEEEEEE
+CHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCC
+>ss_conf PSIPRED confidence values
+9764358980899988888799165087449808802588865474489986898685648998721279999999860799888846999925888787
+5677772343366777776768999985544776556899998587853883121232146679988999999948987999999518999733899974
+379938874799999741898763026999999998720379
+>Consensus
+xxxxxxsfxfxxFxxxxxxlxlxGxAxixxxxxlxLTxxxxxxxxxxGxvxyxxpvxlxxxxxxxxxsFstxFxFxIxxxxxxxgDGlAFxlxpxxxxxx
+xxxxGxxlGlxxxxxxxxxxxxxAVEFDTxxNxxxxxxDpxxnHigixxnsxxsxxxxxxxlxxgxxxxvxIxYdxxxxxLxVxlxxxxxxxxxxlxxxi
+dLxxxlxxxxyvGFSAsTGxxxxxxxhxIxsWsFxxxlxxxx
+>09ce670d46e49ba58915a7017daeb51d
+NLSDDLSFNFDKFVPNQKNIIFQGDASVSTTGVLQVTKVSKPTTTSIGRALYAAPIQIWDSITGKVASFATSFSFVVKADKSDGVDGLAFFLAPANSQIP
+SGSSAGMFGLFSSSDSKSSNQIIAVEFDTYFGKAYNPWDPDFKHIGIDVNSIKSIKTVKWDWRNGEVADVVITYRAPTKSLTVCLSYPSDGTSNIITASV
+DLKAILPEWVSVGFSGGVGNAAEFETHDVLSWYFTSNLEANN
+>gi|255579110|ref|XP_002530403.1| carbohydrate binding protein, putative [Ricinus communis]gi|223530052|gb|EEF31973.1| carbohydrate binding protein, putative [Ricinus communis]
+---PIYTLSLETLiTSNrnfDPQTVLLGNATISGNGsSVQLT---TPNASSSGLLLYKNPFRLHSSTPSKPMSFSTEFEFSFTGN---LI-GLSLVMGPF
+NFVSnFM---G--QGAVDS---VNKKGYLGIEFGYSRDGN------DGNSTKILV--LIRVNNEPLGhvwTERGQRMKAWIDYDASSKRIEIRINELNGK
+RPYdpFAAYALDLSKMWSDnEAFVVLGSNDgG--NPSGTCNVYSWRFRL------
+>gi|326492602|dbj|BAJ90157.1| predicted protein [Hordeum vulgare subsp. vulgare]
+-----WQFVLNGF--AGANLTLGGTSMVLPNGLLMLTN-GA-TRKMKGHAFHPSPLPFGSgsNGAGPLRSFSTTFVLAIFghGRHAdLSVRGLSFLISAS
+WEVLSTALSGQPLGLSN----gNQNASIFAMEFDTLYNAQF--SDTKNKYVGVDGDSLVSLNSASIGNyddgtgrllnlsvISWKAIQVWVDYDSKATVI
+TMTMAPLGvvRPKQPMLQTTIDLSGVVQSTAYVGFSSAMS--NITSGHFILGWSFA-------
+>gi|281211734|gb|EFA85896.1| hypothetical protein PPL_01128 [Polysphondylium pallidum PN500]
+-------YNYELL--TRSKLNLIGNCKILS-DRIELTPR---QNDQVGAFWVKDKLKVTD-----------GFVVRIKFINEmGGADGMAFVLHNHSADV
+IG-KRGSGLGY------DGIENSLAVEFDSYSSVDSC-ADPNGNHISIHCNGERKNSSHhqhSlahampVdnvPINDGRIHHAAITYNANSKTMSVWYDS
+FN----ILTDVSVDLDTLLdlPnGEAWIGMTASTG--GLCQSHHILSFEFG-------
+>gi|308081648|ref|NP_001183315.1| hypothetical protein LOC100501716 [Zea mays]gi|238010732|gb|ACR36401.1| unknown [Zea mays]
+---HVDSFSYPTFDATtTQDLVAATNTSILTSASLLFGHDAdFNFNRTEGFILLSRTVDVWRAGPGggpaREASFNTSFALSGAA-------PVAYVVLR
+DSY-PPLHGTGGLRGFANYSasdaEDgatprNASSGLASVEVGPVRS-----YGPDDPAVGLNVTVT-PTGG---TAPGG--GgggggarAVWIEYDAAK
+HRLSVYVAAAGepRPAAALLDARLGLAGrRTTETAMVGFFASAI--Q-DVLVGVRDWNLTV------
+>gi|300175631|emb|CBK20942.2| unnamed protein product [Blastocystis hominis]
+------------------rNWQCTGDGIVN-EYFVRLTPD---RQSKNGV--------LWADNTFNKGEFVTTIKFRISGQGSsLFGDGFAVFFTKHRS-
+PIP---GKMYSLTDV------YYGFAVVFSTFRNTEFSRYhrDIaiylgdgysnaftqDKDHTGCYAR-Y-RFHEKRQDFSVDNYAVVKIGYSESTGLVR
+VAIDEKNTGK-FTTCFTEAthFEPGWWREATIGISATTG--QLADNHDILSVETVE------
+>gi|134109915|ref|XP_776343.1| hypothetical protein CNBC5610 [Cryptococcus neoformans var. neoformans B-3501A]gi|50259017|gb|EAL21696.1| hypothetical protein CNBC5610 [Cryptococcus neoformans var. neoformans B-3501A]
+----------------NQALVTFGDAHWDG-STIVLTTG----NSQTSAVFHPHPIDQSD-------TFSCTVTFRLTSPPGaGEADGISIIFVPKKA-L
+GLGGyGLGYSGLGGK-------GDFAVEVDTYRTQDYA-DDPPTPHISVHsppdahhRNSIGCTAPGTLpKLSNGKEHKLQILYRGEDRRVRGYLTISSE
+gSvKdeTDIEVFDIVVPSGnEQKPWFIGVTGSCG--GLWQKQEIIDWSLQL------
+>gi|257875308|ref|ZP_05654961.1| predicted protein [Enterococcus casseliflavus EC20]gi|257809474|gb|EEV38294.1| predicted protein [Enterococcus casseliflavus EC20]
+------------------------------------------TSSVSGGVWFNKAVSFT-------RSFRLEMAFCIENT-ATDSDGLAFVMQSSGLNAL
+AQQAGPTIGVWSNTGGtNplntgAIPQSFAIEFDTFYNSGslgvhgAMDRDaPNSHHIAWNFPGSnDAYTTEGWlptykvvnhkdlvavsDISDSQWHTF
+TVTFDQPNQTLHYSVPDFGvDvtvPVDDTFKTNLNLTN--NAPVYFGFTGANG--GNVQ-----------------
+>gi|224088190|ref|XP_002308362.1| predicted protein [Populus trichocarpa]gi|222854338|gb|EEE91885.1| predicted protein [Populus trichocarpa]
+----GHSFRYPTFHEdSQTDFISHNSAIVL--NAIQATPNvkGDSIAIFSGCALYRKQFKLWAGKGRVRATLNSTFVLGISPQTKPGGEGITFILTADS-
+GLPE------------------------------------------------------------------------------------------------
+---------------------------------------------
+>gi|323347643|gb|EGA81908.1| Uip5p [Saccharomyces cerevisiae Lalvin QA23]
+--------------------HVGGATQIRNIQSIKLTQDRD--QDKHGLV-------LSNGIgDNTINDFEIVFTFRISHDPtTqLTGDGMCFAITPENG
+FLTQNlqsSYakKQYMmnsqGVIADNTDlmgFPKNlPGLFIVLDTYRNQGhdhkevpFMdvfiNVAPESDWYDINSDGELSTSLrlnsRghiKLkkNALW
+NRVTKLRIIYLESISFLKIDVQYAKE-GNYWIElFQTTENLYLPKnmhtgQRYIGCSALNG--QLTETVELLD-----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+N 1 * * * * * * * * * * * 0 * * * * * * * * 1
+ 0 * * * * * * 1477 0 0
+
+L 2 2757 * 4549 * 4371 * 4483 * * 3333 * * * 4508 4389 1217 4473 4318 * * 2
+ 0 * * * * * * 4482 0 0
+
+S 3 1133 * 4161 4967 * 4250 * 4822 * 3513 5121 * 5488 4293 * 3918 3965 4372 * * 3
+ 162 3647 5260 1040 961 * * 5309 1137 0
+
+D 4 4530 * 3016 2797 4618 3832 5207 * 4558 5392 * 4695 4228 3851 5869 2241 3395 * * * 4
+ 37 5287 * 1000 1000 * 0 5819 1001 1000
+
+D 5 3147 4687 3635 4636 * 3924 5711 4269 5836 * * 3806 2871 5353 * 2641 3394 3555 * * 5
+ 24 5899 * 1585 585 0 * 5999 1000 1000
+
+L 6 5012 * 3535 4882 3913 5704 7024 3650 * 2148 * 4754 5707 * * 4607 2830 2612 * 4354 6
+ 0 * * * * * * 6253 0 0
+
+S 7 6197 * 4115 4499 * 5146 4455 * 3755 * * 3969 * 4134 * 954 3945 5878 * 5829 7
+ 20 6179 * 0 * * * 6298 1000 0
+
+F 8 6273 * * * 480 * 4836 4156 * 4058 * * * 5961 * * * * * 3283 8
+ 0 * * * * * * 6341 0 0
+
+N 9 5738 * 3547 5176 * * * 4367 6397 4491 * 2014 * 5009 5486 1760 3553 3611 * * 9
+ 0 * * * * * * 6341 0 0
+
+F 10 * 5361 * * 862 * 6056 4324 * 3663 * * * * 6115 * * * * 1905 10
+ 0 * * * * * * 6367 0 0
+
+D 11 6115 * 2719 4313 * 5181 * * * * * 2309 2113 5834 * 2459 3016 * * * 11
+ 145 4760 4090 1585 585 * * 6367 1126 0
+
+K 12 * 5528 4359 4890 4258 2310 * * 4111 5829 * 3270 5908 6332 * 1576 4045 4732 * * 12
+ 0 * * * * 0 * 6351 0 1198
+
+F 13 * * * 6155 250 * * * * 4282 * * 6010 * * 5655 5179 * * 5013 13
+ 646 5728 1548 0 * * * 6386 1021 0
+
+V 14 3985 * 3501 4814 * 3741 5983 5687 5516 * * 3131 3874 5730 4369 2403 2636 4061 5529 * 14
+ 275 5698 2696 0 * * 0 5821 1000 2520
+
+P 15 2745 * 5383 3061 * 3354 * 5180 4139 * 5460 3662 2525 5524 * 2972 4282 4355 * * 15
+ 229 2766 * 1056 946 100 3907 5581 1362 2883
+
+N 16 4155 6120 3059 4529 * 3640 6142 6124 4443 3897 * 2405 8281 * * 2375 2770 * * 6281 16
+ 196 2978 * 1014 986 * 0 6571 1640 1070
+
+Q 17 3427 * 3428 3804 6034 3971 6728 6469 6509 3651 * 3414 4338 3207 6186 2399 3557 * * 6354 17
+ 333 2703 4249 1505 627 * 0 6682 1792 1070
+
+K 18 3529 6661 3633 3903 5974 3046 6496 * 4531 6614 * 4059 3255 5200 3725 2163 4260 * * 6447 18
+ 78 4244 * 0 * 565 1627 7111 1431 1368
+
+N 19 4114 * 2773 5524 6824 3738 4792 4743 5107 5491 * 2134 6473 3710 5512 2916 3511 6937 * * 19
+ 54 4774 * 1128 882 0 * 7276 1202 1070
+
+I 20 * * * * 3089 6246 * 3297 * 1102 5257 5785 5835 * * 6741 6437 3842 3077 5022 20
+ 0 * * * * * * 7330 0 0
+
+I 21 3361 6531 3643 4672 6753 * 4605 2870 4898 3957 * 5270 6138 4801 4700 3333 2814 3322 5530 6666 21
+ 11 * 6985 * * * * 7364 0 0
+
+F 22 4253 4964 * * 2773 * 6496 4314 6839 1106 * * 5844 * * 5531 4465 3753 * 3719 22
+ 0 * * * * 0 * 7376 0 1000
+
+Q 23 4854 * 4240 3855 4734 3210 5134 5262 5888 3012 5794 2928 6638 2655 * 4099 4206 5008 * 4622 23
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+
+G 24 * * 5778 5633 * 284 * * 6785 6844 * 4728 6725 * 5811 5688 5277 * * 6325 24
+ 0 * * * * 0 * 7452 0 1060
+
+D 25 3382 * 1496 4015 6549 4553 6936 8725 * * 7031 2566 5253 7014 6833 2594 5591 5790 * * 25
+ 10 * 7174 * * * * 7441 0 0
+
+A 26 598 5782 7211 6874 * 5500 * * * * * * 6352 * 6708 2970 3202 5272 * * 26
+ 0 * * * * 0 * 7450 0 1000
+
+S 27 3536 * 5047 5290 4415 5227 4782 4880 3974 4847 5537 5425 * 4489 4060 2670 2509 3739 * 4091 27
+ 13 * 6798 * * * * 7441 0 0
+
+V 28 4547 5566 6902 6707 4593 7349 * 2017 5694 2530 6520 * 5750 5932 5383 6128 5697 1948 4813 4919 28
+ 95 5396 4651 2271 335 0 * 7459 1118 1000
+
+S 29 4358 5728 3450 5693 6819 3608 7036 5168 6479 3226 4563 3397 5225 6604 4294 2795 3287 3763 * 4976 29
+ 443 4879 2119 1250 787 1082 922 7445 1192 1251
+
+T 30 3541 6000 3188 4067 6582 3693 * * 6338 5297 6043 3680 3494 5442 3658 2486 3290 5201 * 6438 30
+ 397 4099 2455 1299 753 251 2646 7257 1287 2763
+
+T 31 5114 6556 2388 4608 * 2983 6602 6004 3774 5457 * 1934 5409 6393 4201 3424 6541 6169 * 6520 31
+ 114 3906 6703 1565 595 265 2577 7276 1358 2274
+
+G 32 4596 * 3511 * * 1441 4884 * 6671 * 5807 2987 6834 5572 3689 2997 4252 6786 * 5590 32
+ 261 3282 3992 431 1952 2284 332 7434 1717 1227
+
+V 33 3152 4413 6910 4878 3944 5500 * 3582 4595 4075 6800 5549 6754 5212 3441 2552 4047 3844 5775 4338 33
+ 30 6975 6297 0 * 398 2054 7405 1000 1623
+
+L 34 5127 * * * 4942 6837 * 1646 * 1212 5836 6684 * * * * 7074 2880 * 6894 34
+ 0 * * * * 349 2219 7511 0 1236
+
+Q 35 5424 6565 5894 4334 * 5447 6650 5030 4731 4291 5856 4614 * 2367 1827 4119 4241 3403 * 6844 35
+ 22 7083 7067 3000 193 * 0 7534 1002 1000
+
+V 36 6022 * * * 4872 * * 3379 * 375 5298 * * * * * 6459 4432 * * 36
+ 36 5906 6920 1403 685 1617 569 7545 1141 1131
+
+T 37 4153 6599 6435 * 6718 5321 * 6598 * * * 4104 5734 * * 4277 436 6701 * * 37
+ 55 * 4739 * * 515 1736 7529 0 1131
+
+K 38 4634 6881 3882 4202 * 4086 5526 5779 3952 4874 * 2707 2260 3863 4250 3718 3975 6837 * * 38
+ 46 * 4993 * * 2658 249 7482 0 1312
+
+V 39 3424 * 1800 4769 * 3812 * 5719 4794 * * 3312 5146 6887 4982 2922 4532 3610 6381 5737 39
+ 2336 2228 765 1113 895 3128 175 7452 2565 1504
+
+S 40 3701 * 3149 3992 * 1921 5658 4547 5381 * * 3270 5559 5171 4744 3325 3511 5682 * * 40
+ 233 2985 5447 1316 741 3492 134 5883 1370 5058
+
+K 41 5815 * 3921 3054 4339 2768 * 4097 3778 4478 * 3752 * 3905 4467 3295 3953 4253 * 5776 41
+ 351 4864 2461 0 * 3109 178 6086 1064 4814
+
+P 42 4637 * 3995 * 5209 5532 * 5521 4138 5650 * 3408 1740 3613 5669 2251 4479 * * * 42
+ 186 3975 4131 879 1132 256 2618 5983 1142 4866
+
+T 43 5101 * 5482 4288 4954 5946 5751 4444 4767 4440 4879 4106 4256 4070 3054 3125 2987 3301 6337 5463 43
+ 104 5157 4584 378 2118 1307 747 7460 1136 1911
+
+T 44 4000 * 4685 5013 7227 4564 6005 5951 4725 5270 9104 3184 3169 3339 3701 3062 2869 4284 * 5914 44
+ 92 4188 7149 1970 425 909 1098 7450 1455 1866
+
+T 45 5947 * 3191 5079 4597 3791 4569 6070 * 5394 7129 2349 4645 5848 4166 2218 4831 6049 5399 4475 45
+ 24 5944 * 0 * 227 2781 7589 1092 1430
+
+S 46 5241 7029 * 5097 8203 4965 * * 2954 5027 7122 6454 4846 1843 4416 1755 4403 6193 * 7541 46
+ 15 * 6576 * * * 0 7642 0 1000
+
+I 47 2916 4855 * 5459 5183 4844 4529 4138 6147 5137 5748 5772 * * 3694 2378 3519 2454 5556 7040 47
+ 0 * * * * 1193 830 7614 0 1096
+
+G 48 6561 6361 6313 * * 196 * * * * * * * * * 3559 7192 * * * 48
+ 20 7229 7192 0 * 0 * 7612 1004 1021
+
+R 49 3473 6476 * * 5518 4154 4003 6790 * 5141 * 6861 * 4662 1484 2678 4060 5280 4435 5199 49
+ 95 * 3971 * * 0 * 7650 0 1002
+
+A 50 1481 5389 * * 5465 5448 * 2775 * 5137 6028 * 6037 * * * * 1484 * 6666 50
+ 31 * 5565 * * * 0 7506 0 1534
+
+L 51 6913 6940 * * 2088 * * 3900 * 2019 4468 * * 5582 * 4718 5133 3801 2509 4193 51
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+
+Y 52 5241 5914 7087 * 3012 * 4115 6453 6965 3333 6963 5431 * * 7100 3189 7178 6970 * 1040 52
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+
+A 53 4500 * 7066 4472 * 5022 6000 6297 2532 * 6134 2679 2659 5088 3361 3119 4006 6544 6921 5672 53
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+
+A 54 4321 * 4558 3455 5695 7066 4696 5499 2699 4184 6689 2958 6000 3630 3441 4387 2986 6392 * 7147 54
+ 11 * 7069 * * * 0 7466 0 1701
+
+P 55 4816 * 6681 5240 * * 7074 * 2937 5956 6896 * 740 4568 3468 7105 6416 * * 5993 55
+ 12 6905 * 0 * 3748 112 7460 1000 1760
+
+I 56 5171 5322 * * 3705 * * 1740 7069 2689 5411 * 6000 5302 * * * 1582 6628 * 56
+ 21 * 6081 * * * 0 7466 0 1701
+
+Q 57 4603 * 3134 5066 * * 4118 * 4707 5714 * 4035 2412 2388 3230 3818 3889 * 9402 6177 57
+ 73 * 4335 * * 560 1636 7429 0 1833
+
+I 58 5242 * * * 2350 * * 3407 * 1147 4100 * * 5478 * 4824 7289 3198 * * 58
+ 141 5987 3689 1000 1000 2010 412 7579 1082 1588
+
+W 59 * 5844 5824 6466 4187 6258 6404 7031 3136 3498 5852 6861 6987 * 3147 3239 4401 5102 1658 5794 59
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+
+D 60 4767 * 1574 4247 * 4995 7368 * 4120 * * 2306 4814 5429 3757 2863 * 7066 * * 60
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+
+S 61 3955 * 3934 4180 7118 3507 4544 * 3400 6590 * 3685 3585 4521 4083 1908 5398 5799 * * 61
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+
+I 62 2986 * 4520 6372 * 3564 5538 4243 4387 4379 5984 2882 6165 4216 4896 2747 3042 4637 * * 62
+ 96 3959 * 2420 298 3945 97 6723 1243 4381
+
+T 63 3819 5781 3902 * * 4017 5592 * 4380 6198 * 5730 3040 6117 5539 2384 1591 * * * 63
+ 50 5791 5983 857 1159 3115 177 6798 1091 4203
+
+G 64 4170 5607 6282 4512 5845 1483 5251 5802 3887 6020 5878 3816 5733 6520 3313 3593 5541 5294 * 5902 64
+ 129 3774 6320 1890 454 2547 271 6845 1393 3954
+
+K 65 3633 * 5898 4523 5538 3718 * 4666 3235 5298 * 2889 6129 4413 3262 3168 3015 4641 * 6047 65
+ 91 4623 5602 2388 306 1758 506 7003 1203 3587
+
+V 66 2923 * 5140 4058 4735 5159 6339 4306 6181 3149 4923 3857 4666 5634 4707 5168 4371 2006 * * 66
+ 0 * * * * 1041 961 7314 0 3015
+
+A 67 1625 * 5053 * 4646 5123 6154 6709 4737 5148 6463 4169 7055 4730 3393 3031 3461 4525 7046 5931 67
+ 11 7046 * 1000 1000 535 1690 7557 1000 2067
+
+S 68 5620 * 2791 4747 7362 2884 6979 * 7279 7220 * 5307 5880 * 5718 971 5042 5925 * 5874 68
+ 0 * * * * 2361 312 7669 0 1295
+
+F 69 * * * * 203 * * 6149 * 4273 7045 * * * * * * 5674 4703 * 69
+ 0 * * * * 2112 380 7674 0 1224
+
+A 70 4602 * 4479 3829 7459 * 6004 4602 4137 5103 6785 3088 * 4673 4832 1602 3131 4302 * * 70
+ 0 * * * * * 0 7675 0 1156
+
+T 71 3532 4585 * 7325 * * 6004 3506 * 4354 5463 6765 * 5475 6820 4513 877 4391 7191 7161 71
+ 0 * * * * 605 1546 7675 0 1156
+
+S 72 5937 7308 4134 2864 5311 5122 4232 6745 4607 5519 6663 3893 * 6514 4214 2373 2423 5063 * 4256 72
+ 13 * 6813 * * * 0 7697 0 1004
+
+F 73 * * * * 299 6862 6109 5142 * 3694 5601 * * * * * * 5019 * 7183 73
+ 40 * 5184 * * * 0 7667 0 1090
+
+S 74 4040 4696 4595 4320 7202 * * 4362 4951 5021 * 4879 6408 4820 5469 2220 1992 3246 * 6013 74
+ 0 * * 0 * 300 2413 7610 1000 1342
+
+F 75 * * * * 477 * * 4822 * 3476 6883 * * 6840 * * * 3521 7057 4496 75
+ 38 5273 * 716 1354 * 0 7683 1187 1004
+
+V 76 2994 5211 6049 5732 5878 8482 5899 5388 3464 4609 6654 3704 6883 3652 2619 2745 3808 4893 6665 5645 76
+ 0 * * * * * 0 7683 0 1004
+
+V 77 6765 * * * 4710 6520 * 898 * 2689 3547 * 6012 6883 * 5326 5932 3435 * 7193 77
+ 18 6347 * 1044 957 * 0 7683 1057 1004
+
+K 78 3993 * 4104 4724 6417 3702 4123 5958 5745 4328 * 3360 5266 5146 3976 3149 2387 4280 * 4636 78
+ 39 * 5220 * * * 0 7683 0 1004
+
+A 79 3696 7168 4097 5182 5653 2671 4704 * 4643 5291 * 3520 2517 5901 4533 2985 4241 6210 * 4856 79
+ 212 3815 3928 901 1107 2503 280 7615 1689 1302
+
+D 80 4050 * 3592 3902 6968 3980 5806 6009 3311 5692 7167 3311 3319 3441 4055 3693 4210 4529 * 5052 80
+ 415 3594 2582 1379 700 3772 110 7496 1663 1827
+
+K 81 4681 * 4541 5739 6834 2986 5892 5135 4577 5219 * 2287 3529 3739 4563 3103 4074 5479 * 4525 81
+ 271 2688 5963 2879 211 2125 376 7213 2065 2992
+
+S 82 3352 7430 3314 3837 * 3285 * 6856 3347 4624 * 3994 3402 5002 3768 3371 3387 5544 * * 82
+ 1905 470 6486 229 2769 3802 107 7272 5352 2669
+
+D 83 3437 * 3750 5871 4908 3290 4578 4221 7072 3316 6129 3193 4671 5405 4333 3014 4122 4725 5489 * 83
+ 41 5166 * 401 2043 525 1712 7271 1136 2693
+
+G 84 4195 6765 4754 4993 4629 1683 5572 6024 5471 5148 * 6248 2958 6372 4841 2895 4664 7053 * 4093 84
+ 13 6805 * 3110 178 1993 417 7605 1088 1505
+
+V 85 1686 7217 6285 * * 1032 * 6564 * * * 6818 5684 6871 5361 4372 4867 5239 * * 85
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+ 13 6819 * 2000 415 1658 550 7624 1008 1162
+
+V 218 4796 4943 6643 * * 5690 * 7095 6102 * 6286 3810 * * 6692 3463 611 4603 * * 218
+ 60 5046 6606 1117 892 * 0 7627 1215 1088
+
+G 219 5339 * 5773 5683 * 277 * 6433 * * * 5948 6813 * 6438 4728 5937 6653 * * 219
+ 2911 * 206 * * * 0 7621 0 1180
+
+N 220 3661 * * 3595 * * * * * 1793 * 1548 4151 * * * 2722 * * * 220
+ 986 1535 2739 0 * * 0 4357 1376 6431
+
+A 221 3407 * 3375 2601 * 3427 * * 3109 * * 3441 * * * 3350 2026 * * * 221
+ 143 3406 * 1000 1000 41 5151 4059 1011 6488
+
+A 222 4214 * 3298 3767 7312 2259 5616 6251 5323 5007 7300 3433 * 3476 4722 3461 3862 4587 * 4709 222
+ 169 4311 4058 1848 469 1639 559 7573 1361 1164
+
+E 223 3248 5328 4590 5411 3919 4748 4359 6153 6919 2448 * 4025 4201 4309 7130 2845 5678 4208 6969 4239 223
+ 34 6039 7002 0 * 1842 472 7462 1069 1656
+
+F 224 3327 5007 4637 * 4240 4535 6909 3947 5127 3904 4398 6490 7258 * 5979 2810 2984 3388 4374 3821 224
+ 48 4921 * 556 1646 * 0 7513 1239 1531
+
+E 225 3427 7136 3221 1915 * 5612 5330 * 6809 * * 4169 7317 1836 * 3716 7102 4382 * * 225
+ 0 * * * * 1294 756 7513 0 1531
+
+T 226 4333 * 6186 4619 4548 4930 6121 3916 3364 2522 7217 3457 * 6545 4448 3635 2522 5318 * 4848 226
+ 23 5961 * 1336 727 292 2450 7487 1072 1289
+
+H 227 7061 5178 * * 4880 * 837 6810 * 6670 * 3647 6823 3251 4712 7246 5976 4001 * 4819 227
+ 0 * * * * * 0 7506 0 1000
+
+D 228 5281 4712 2214 3229 4017 4963 5184 6109 5573 5535 6933 3638 * 3721 3879 3923 4200 6004 * 3892 228
+ 13 * 6765 * * * 0 7490 0 1000
+
+V 229 * * * * 5893 * * 986 * 2736 * * * * * * * 1607 * * 229
+ 14 * 6656 * * * 0 7456 0 1075
+
+L 230 6907 * 5769 5050 5790 5447 3883 3280 4924 1325 6883 5454 * 7014 3476 5891 6992 4821 7348 3260 230
+ 0 * * 4322 74 625 1508 7392 1000 1159
+
+S 231 4017 * 3732 4632 * 3451 7048 * 5279 5707 * 3998 * 7140 4376 1291 4372 6732 4218 4619 231
+ 0 * * * * 0 * 7441 0 1008
+
+W 232 6990 4969 * * 3559 6821 * 6505 * 5450 * * * 6721 6338 * * 4384 390 * 232
+ 0 * * * * * * 7364 0 0
+
+Y 233 4178 6853 4598 2988 5891 7293 * * 5049 * * 3240 * 5565 4443 1393 3733 6210 * 3778 233
+ 0 * * * * * * 7342 0 0
+
+F 234 * 6763 * * 553 * * 4956 * 2691 6363 * * 6192 * * 4592 6707 6672 4816 234
+ 0 * * * * * * 7190 0 0
+
+T 235 5047 5003 7221 4428 * 5529 5288 * 3500 5481 6633 3401 * 4414 3717 2252 2388 4458 * 4230 235
+ 0 * * * * * * 7153 0 0
+
+S 236 3998 6127 4631 4526 * 5434 * 4185 * 4066 4354 3805 * * * 1578 2789 3303 * * 236
+ 49 * 4917 * * * * 7128 0 0
+
+N 237 5114 * 5069 4361 5964 5843 * * 2998 5857 * 3358 * 5057 4107 2003 2294 5695 * 4097 237
+ 26 5833 * 0 * 910 1096 6194 1000 1084
+
+L 238 * * 5444 * 3018 4371 * 5570 * 913 3883 * * * 4277 5320 * 5804 5566 3846 238
+ 90 4050 * 1627 564 0 * 5904 1072 1000
+
+E 239 5147 * 3423 2059 * 4792 5303 4481 3957 * * 5128 2761 3405 5063 5120 3308 4721 * * 239
+ 234 2742 * 0 * * * 5356 1002 0
+
+A 240 2512 * * * * * * * * * * 2541 * * * 1556 1677 * * * 240
+ 0 * * * * * * 2708 0 0
+
+N 241 * * * * * * * * * * * 0 * * * * * * * * 241
+ 0 * * * * * * 1000 0 0
+
+N 242 * * * * * * * * * * * 0 * * * * * * * * 242
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 0a209425cf52d1e9fc937e5aed5d7d69
+FAM
+FILE 0a209425cf52d1e9fc937e5aed5d7d69
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:45:15 2013
+LENG 169 match states, 169 columns in multiple alignment
+FILT 10 out of 12 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 2.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHH
+HCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECC
+>ss_conf PSIPRED confidence values
+9866645789517999999998711999999999999971797654276665689999999999999866034499997612767679999999999998
+756988999999999986699877520123027999999986038751248679999970976976059
+>Consensus
+mxxxxxihxnpxRxeWxxKIaxLxtxxxaxaxlxdFRxxxtsPfrxsyxldxdxxwIExkIEervavLkxxxxxdxxllxkxxxGxdaxxVxxxxxakxx
+axxdxyEaErIxixFRxxxKPPvmPvNxFlxtdrxLgtkLMelRnxdYyxxpLeeLRkxRGvxvixlqx
+>0a209425cf52d1e9fc937e5aed5d7d69
+MAKREPIHDNSIRTEWEAKIAKLTSVDQATKFIQDFRLAYTSPFRKSYDIDVDYQYIERKIEEKLSVLKTEKLPVADLITKATTGEDAAAVEATWIAKIK
+AAKSKYEAEAIHIEFRQLYKPPVLPVNVFLRTDAALGTVLMEIRNTDYYGTPLEGLRKERGVKVLHLQA
+>gi|269980465|gb|ACZ56338.1| putative soluble di-iron monooxygenase gamma subunit [Mycobacterium chubuense NBB4]
+-----madetrsgrrrargqesvgaefrlepsPYGNTALRSDWAARAESLSDLDDAVATLMNYRSDR------wg--SEDQDSLWIEARLEERVAVLR-l
+QSMTDEEFRTRTLTGEDARHVCTDVAGRVAAAGDDYgEIERINDEFRSKYKPPVMPANLFLPTERDLSEKLMKTRTVDWYGKSLGELREERGVV------
+>gi|217977449|ref|YP_002361596.1| methane monooxygenase [Methylocella silvestris BL2]gi|74381912|emb|CAJ26294.1| protein A-gamma subunit of soluble methane monooxygenase [Methylocella silvestris BL2]gi|217502825|gb|ACK50234.1| Methane monooxygenase [Methylocella silvestris BL2]
+MPNYK-IHENPVRSDWLEKIAELKSVKDATAFIQDFRKKNTSPFRTSYALDVDYLFIEAKIEERLAVLKSSTFSAADLFTKATTGETAQAVSEDWIAKID
+AEKDKFAAEKILITFRQLYKPPVLPVNLFFKVDTYLGSRLMELRNTDYYADSLDDLRKKRGVKVLRLGN
+>gi|53804672|ref|YP_113663.1| methane monooxygenase subunit A, gamma chain [Methylococcus capsulatus str. Bath]gi|19855848|sp|P11987.4|MEMG_METCA RecName: Full=Methane monooxygenase component A gamma chain; AltName: Full=Methane hydroxylasegi|13399579|pdb|1FZ4|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph 8.5 (0.1 M Tris)gi|13399580|pdb|1FZ4|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph 8.5 (0.1 M Tris)gi|13399585|pdb|1FZ5|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Crystallized Anaerobically From Reduced Enzymegi|13399586|pdb|1FZ5|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Crystallized Anaerobically From Reduced Enzymegi|13399591|pdb|1FZ7|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9 M Ethanolgi|13399592|pdb|1FZ7|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9 M Ethanolgi|13399724|pdb|1FYZ|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Reduced By Soakinggi|13399725|pdb|1FYZ|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Reduced By Soakinggi|13399730|pdb|1FZ0|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent Grown Anaerobicallygi|13399731|pdb|1FZ0|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent Grown Anaerobicallygi|13399736|pdb|1FZ1|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Oxidizedgi|13399737|pdb|1FZ1|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Oxidizedgi|13399742|pdb|1FZ2|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent Generated By Crystal Soakinggi|13399743|pdb|1FZ2|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent Generated By Crystal Soakinggi|13399748|pdb|1FZ3|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2 (0.1 M Pipes)gi|13399749|pdb|1FZ3|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2 (0.1 M Pipes)gi|14278259|pdb|1FZ6|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M Methanolgi|14278260|pdb|1FZ6|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M Methanolgi|14278265|pdb|1FZ8|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized With Dibromomethanegi|14278266|pdb|1FZ8|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized With Dibromomethanegi|14278271|pdb|1FZ9|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized With Iodoethanegi|14278272|pdb|1FZ9|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized With Iodoethanegi|14278277|pdb|1FZH|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Pressurized With Xenon Gasgi|14278278|pdb|1FZH|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Pressurized With Xenon Gasgi|14278283|pdb|1FZI|E Chain E, Methane Monooxygenase Hydroxylase, Form I Pressurized With Xenon Gasgi|14278284|pdb|1FZI|F Chain F, Methane Monooxygenase Hydroxylase, Form I Pressurized With Xenon Gasgi|66360573|pdb|1XU5|E Chain E, Soluble Methane Monooxygenase Hydroxylase-Phenol Soakedgi|66360574|pdb|1XU5|F Chain F, Soluble Methane Monooxygenase Hydroxylase-Phenol Soakedgi|66360581|pdb|1XVB|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol Soaked Structuregi|66360582|pdb|1XVB|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol Soaked Structuregi|66360587|pdb|1XVC|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol Soaked Structuregi|66360588|pdb|1XVC|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol Soaked Structuregi|66360593|pdb|1XVD|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol Soaked Structuregi|66360594|pdb|1XVD|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol Soaked Structuregi|66360601|pdb|1XVE|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 3-Bromo-3- Butenol Soaked Structuregi|66360602|pdb|1XVE|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 3-Bromo-3- Butenol Soaked Structuregi|66360607|pdb|1XVF|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structuregi|66360608|pdb|1XVF|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structuregi|66360613|pdb|1XVG|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol Soaked Structuregi|66360614|pdb|1XVG|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol Soaked Structuregi|67464472|pdb|1XU3|E Chain E, Soluble Methane Monooxygenase Hydroxylase-Soaked With Bromophenolgi|67464473|pdb|1XU3|F Chain F, Soluble Methane Monooxygenase Hydroxylase-Soaked With Bromophenolgi|7770067|gb|AAF04157.2| soluble methane monooxygenase hydroxylase component gamma subunit [Methylococcus capsulatus]gi|53758433|gb|AAU92724.1| methane monooxygenase, A subunit, gamma chain [Methylococcus capsulatus str. Bath]
+-----MaklgIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTV
+AKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQspH
+>gi|2098698|gb|AAC45292.1| soluble methane monooxygenase protein A gamma subunit [Methylocystis sp. M]
+MAKREPIHENSTRTEWEGKIAKLNSVEQATKFIQDFRVAYSSPFRKSYDLDVDYQYIERKIEERLSVLKTEKLSVADLITKATTGEDPAAVEATWVAKMK
+SAASKYEAERIHIEFRQLYKPPVLPVNVFLRTDAALGTILMGVRNTDYYATPLEGLRKERGVKVLHLQA
+>gi|41019262|gb|AAR98537.1| butane monooxygenase gamma subunit [Brachymonas petroleovorans]
+MMAEH-WYHTPVRDEWLEKIAALRTVQEGIAMLQQFRKEHTGPDRLTYELKKEANWIESRIEMRVAQLHSEaTIANAALLEKTIDGRDPVEITEEWLKKA
+EDIDCPIEMQRLCTAYRKAWKPPMMPINYFAPVEKKLVSKLLKLRAPNYLTTPVEELRKLHNATLISVQ-
+>gi|89572585|dbj|BAE86878.1| methane monooxygenase hydroxylase component gamma subunit [Methylomicrobium japanense]
+------manykIHDNPVRDEWVKKIGALSSLAKGVQFLKDFREQYTTPLRKSFDLELDWGWIELKIEQKLALLKHKEMNDAQILNKNADGTDAQQLANQV
+LASMDRCNDKWEAEKIHIQFRQQWKPPLMPVNVFQDTDRLLGNKLMELRNANYYDMPLEELRKARGVNVVTLQ-
+>gi|333983360|ref|YP_004512570.1| methane monooxygenase [Methylomonas methanica MC09]gi|333807401|gb|AEG00071.1| Methane monooxygenase [Methylomonas methanica MC09]
+------manIHDNPTRNAWMAKIATLDTMAKAHAFLTDFRARHMSPFKTDWSLELDGLWIELKIEEKLALLKHKEFNDSQLLNNCSCGADAQQVANAAIA
+KMEACEDMYEAERIHINFRLACKPPVMPVNVFLDTDRQLGTKLMELRNTDYYALPLEALREKRGAKVIRLQ-
+>gi|306921974|dbj|BAJ17648.1| soluble methane monooxygenase hydroxylase component gamma-subunit [Methylovulum miyakonense]
+------mpnIHDNPKRAEWANKIAGLKTLAQGHAFLKDFRAQHVSVFKTDFSLELDWLWIELKIEEKVAVLKQAEFSDHQLLNVCTCGTDAQKVANDALA
+AMAACEDMYEAERIHINFRLACKPPVMPVNVFLDTDRQLGTKLMELRNTDYYALPLEELRKARGVRVVTLQ-
+>gi|21239749|gb|AAM19730.1| butane monooxygenase hydroxylase BMOH gamma subunit [Thauera butanivorans]
+MSKQV-WYNTPVRDEWIEKITAIRTAREGTDMLARFRAEHTGPDRTTYDLKKEYNWIESRIEMRVSQLHAEaTASDEDLLTKTIDGRCAKEVAAEWLKKA
+ADIDCHYEMERLCVAFRKACKPPMMPINFFAPAEKELVAKLMKLRAPTYLTTSLDELREARGVTMISVQ-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1969 0 0
+
+A 2 1509 * * * * * * * * * 2133 * 2282 * * 2218 * * * * 2
+ 0 * * * * * * 1969 0 0
+
+K 3 2133 * * * * * * * 820 * * 2282 * * * * * * * * 3
+ 0 * * * * * * 1969 0 0
+
+R 4 * * * 2133 * * * * * * * * * 2218 1509 * * * * 2282 4
+ 0 * * * * * * 1969 0 0
+
+E 5 * * * 1509 * * 2133 * 2282 * * * * * * * * 2218 * * 5
+ 1509 * 625 4755 54 * * 1969 1063 0
+
+P 6 * * * * * * * * * * 1880 * 457 * * * * * * * 6
+ 457 1880 * 1926 441 0 * 1799 1404 1388
+
+I 7 * * * * * * * 680 * * * * * * * * * * 2040 2913 7
+ 0 * * * * * * 2534 0 0
+
+H 8 * * * * * 2913 680 * * * * * * * * * * * * 2040 8
+ 0 * * * * * * 2534 0 0
+
+D 9 * * 1519 2470 * * 2944 * * * * 2023 * * * 3400 * * * * 9
+ 0 * * * * * * 2534 0 0
+
+N 10 * * * * * * * * * * * 680 * * * * 1411 * * * 10
+ 0 * * * * * * 2534 0 0
+
+S 11 2913 * 3400 * * * * * * * * * 717 * * 2606 * * * * 11
+ 0 * * * * * * 2534 0 0
+
+I 12 * * * * * * * 3614 3600 2913 * * * * * * 1915 1191 * * 12
+ 0 * * * * * * 2534 0 0
+
+R 13 * * * * * * * * * * * * * * 0 * * * * * 13
+ 0 * * * * * * 2534 0 0
+
+T 14 3600 * 1202 * * * * * * * * 3510 * * * 2116 2606 * * * 14
+ 0 * * * * * * 2534 0 0
+
+E 15 2454 * 2116 769 * * * * * * * * * * * * * * * * 15
+ 0 * * * * * * 2534 0 0
+
+W 16 * * * * * * * * * * * * * * * * * * 0 * 16
+ 0 * * * * * * 2534 0 0
+
+E 17 2216 * * 2606 * * * 3143 * 2134 3510 * * * * * * 2384 * * 17
+ 0 * * * * * * 2534 0 0
+
+A 18 1726 * * 1552 * 3598 * * 3367 * * 2497 * * * * * * * * 18
+ 0 * * * * * * 2534 0 0
+
+K 19 * * * * * * * * 206 * * * * * 2913 * * * * * 19
+ 0 * * * * * * 2534 0 0
+
+I 20 2913 * * * * * * 206 * * * * * * * * * * * * 20
+ 0 * * * * * * 2534 0 0
+
+A 21 606 * * 2913 * 3367 * * * * * * * * * * 3143 * * * 21
+ 0 * * * * * * 2534 0 0
+
+K 22 1556 * * 3353 * 3600 * * 2606 * * * * 3400 * 2913 3510 * * * 22
+ 0 * * * * * * 2534 0 0
+
+L 23 * * * * * * * 3143 * 173 * * * * * * * * * * 23
+ 0 * * * * * * 2534 0 0
+
+T 24 * * 3510 * * * * * 2471 * * 2496 * * 2040 2122 3614 * * * 24
+ 0 * * * * * * 2534 0 0
+
+S 25 * * 2913 * * * * * * * * * * * * 1478 977 * * * 25
+ 0 * * * * * * 2534 0 0
+
+V 26 3143 * * * * * * * * 1297 3510 * * * * * * 1351 * * 26
+ 0 * * * * * * 2534 0 0
+
+D 27 1904 * 2221 2496 * * * * 3353 * * * * 2944 3143 * * * * * 27
+ 0 * * * * * * 2534 0 0
+
+Q 28 * * 2116 2040 * * * * 1839 * * * * 2019 * * * * * * 28
+ 0 * * * * * * 2534 0 0
+
+A 29 792 * * * * 1243 * * * * * * * * * * * * * * 29
+ 0 * * * * * * 2534 0 0
+
+T 30 3400 * * * * * 2554 2944 * * * * * * * * 1414 2122 * * 30
+ 0 * * * * * * 2534 0 0
+
+K 31 913 * 3143 3400 * * * * 2606 * * * * 3367 * * * * * * 31
+ 0 * * * * * * 2534 0 0
+
+F 32 * * * * 918 * * * * * 1565 * * * * * 2913 * * * 32
+ 0 * * * * * * 2534 0 0
+
+I 33 * * * * * * * 1931 * 439 * * * * * * * * * * 33
+ 0 * * * * * * 2534 0 0
+
+Q 34 3143 * * * * * * * 1867 * 2913 * * 1351 * * 3510 * * * 34
+ 0 * * * * * * 2534 0 0
+
+D 35 * * 918 * * * * * * * * 2913 * 2154 3143 * * * * * 35
+ 0 * * * * * * 2534 0 0
+
+F 36 * * * * 206 * * * * * * * * * * * * * * 2913 36
+ 0 * * * * * * 2534 0 0
+
+R 37 * * * * * * * * * * * * * * 0 * * * * * 37
+ 0 * * * * * * 2534 0 0
+
+L 38 1819 * * 3367 * * * * 2134 3614 3400 * * * * 2913 * 3598 * * 38
+ 0 * * * * * * 2534 0 0
+
+A 39 2606 * 2136 2040 * * * * 3353 * * * * 2479 3510 * * * * * 39
+ 0 * * * * * * 2534 0 0
+
+Y 40 * * * * * * 977 * * * * 3353 * * 2913 * * * * 1937 40
+ 206 * 2913 * * * * 2534 0 0
+
+T 41 * * * * * * * * * * 3325 * * * * 3416 492 3392 * * 41
+ 0 * * * * * 0 2342 0 1063
+
+S 42 * * * * * 1840 * * * * * * * * * 1006 2167 * * * 42
+ 0 * * * * * 0 2342 0 1063
+
+P 43 * * * * * * * * * * * * 144 * * * * 3392 * * 43
+ 0 * * * * * 0 2342 0 1063
+
+F 44 * * 1840 * 715 * * * * 3168 * * * * * * * * * * 44
+ 0 * * * * * 0 2342 0 1063
+
+R 45 * * * * * * * * 2358 * * * * * 313 * * * * * 45
+ 0 * * * * * 0 2342 0 1063
+
+K 46 * * * * * * * * 1735 2770 * 3165 * * * * 1179 * * * 46
+ 0 * * 1000 1000 * 0 2342 1063 1063
+
+S 47 * * 2358 * * * * * * * * * * * * 928 1840 * * * 47
+ 0 * * * * * 0 2342 0 1063
+
+Y 48 * * * * 2276 * * * * * * * * * * * * * 3325 528 48
+ 0 * * * * 0 * 2342 0 1063
+
+D 49 3353 * 1417 2154 * * * * * * * * * * * 1722 * * * * 49
+ 0 * * * * * * 2534 0 0
+
+I 50 * * * 2913 * * * 3614 * 348 * * * * * * * * * * 50
+ 0 * * * * * * 2534 0 0
+
+D 51 * * 1030 1904 * * * * 2040 * * * * * * * * * * * 51
+ 0 * * * * * * 2534 0 0
+
+V 52 * * * * * * * * 2040 1904 * 3400 * 2913 * * * 1931 * * 52
+ 0 * * * * * * 2534 0 0
+
+D 53 * * 402 2040 * * * * * * * * * * * * * * * * 53
+ 0 * * * * * * 2534 0 0
+
+Y 54 2944 * * * * 3510 * * * * * * * * * 2913 * * 2479 1089 54
+ 0 * * * * * * 2534 0 0
+
+Q 55 * * * * * 3367 * * * 1013 * 2040 * 2606 * * * * * * 55
+ 0 * * * * * * 2534 0 0
+
+Y 56 * * * * 3353 * * * * * * * * * * * * * 439 2606 56
+ 0 * * * * * * 2534 0 0
+
+I 57 * * * * * * * 0 * * * * * * * * * * * * 57
+ 0 * * * * * * 2534 0 0
+
+E 58 * * * 0 * * * * * * * * * * * * * * * * 58
+ 0 * * * * * * 2534 0 0
+
+R 59 1620 * * * * * * * * 1904 * * * * 2606 2040 * * * * 59
+ 0 * * * * * * 2534 0 0
+
+K 60 * * * * * * * * 680 * * * * * 1411 * * * * * 60
+ 0 * * * * * * 2534 0 0
+
+I 61 * * * * * * * 372 * 2136 * * * * * * * * * * 61
+ 0 * * * * * * 2534 0 0
+
+E 62 * * * 0 * * * * * * * * * * * * * * * * 62
+ 0 * * * * * * 2534 0 0
+
+E 63 * * * 600 * * * * * * 2040 * * 3367 * * * * * * 63
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+
+Q 168 * * * * * 3137 * * * * * * * 174 * * * * * * 168
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+A 169 1191 * * * * * 1743 * * * * 1926 * * * * * * * * 169
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+
+//
+�HHsearch 1.5
+NAME 0a407d4b0634f8fa863191382dd9ec39
+FAM
+FILE 0a407d4b0634f8fa863191382dd9ec39
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:34:18 2013
+LENG 210 match states, 210 columns in multiple alignment
+FILT 125 out of 1191 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEECCCCEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEEECCCEECCCEE
+EEEEEECCCEEEEECCCCEEEECCCEEEEEEEEECCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCEEEEEEEEECCCCHHHCCEEEEEEECCCCCC
+CEEEEEECCC
+>ss_conf PSIPRED confidence values
+9399953873899889989999998279848999993899984799981254576668617888628748999940461049589999974733624379
+9999602430689628860785498099999992577999789999999997677531002586289838878999993489887918999999589985
+4899994789
+>Consensus
+xxxxxxxxxxxxxxxGxxvxLxCxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxLxIxxxxxxDxgxYxCxxxxxxxxxxxxx
+lxvxxxxxxpxvxxxxxxxxxxxgxxxxLxCxxxxxxpxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxxdxgxyxCxxxxxxxxx
+xxxxxxxxxx
+>0a407d4b0634f8fa863191382dd9ec39
+QIVSTQSPAIMSASPGEKVTMTCSASSSRSYMQWYQQKPGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQRSSYTFGGGTK
+LEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS
+PVTKSFNRGE
+>gi|148691347|gb|EDL23294.1| mCG141185 [Mus musculus]
+----------------------------------------------------------------------------------------------------
+-------------WSHEYCSG---PRRSAKYMNFPIVPircPQTHVTHHRNGKNHTQDM-ELPDTRPAGDGTFQKWAAVLVPSGE---ELRYTGHVYHER
+LPEPLTLKWGK--
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+-------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAAQN-----------------tqrkwe
+aagvaeqw----RAYLEGECLEWLRRYLEKGK------------------et--LQ--raePs-SQ
+>gi|62464905|gb|AAX83161.1| immunoglobulin heavy chain variable region [Aotus nancymaae]
+---------------GDPVPHLRCLWLLhrQ------willeldpPAPKGRG--WSGldisivwWVHql-qrlpQES-----sh---YFsrHVQEPVLVE
+---------A------------------------------------------------------------------------------------------
+-------------------------------------
+>gi|47227730|emb|CAG08893.1| unnamed protein product [Tetraodon nigroviridis]
+---------------GGTLVIPCNtgAIKAedILITKWKYDKGDGLSGDLLVRQ-rsqnasiIANDEYKGRVSM---AANSSLLLSDAKLSDQRTFTCMA
+VVGaNIAEYPVNVVVYKKPTELKISDKAEELEIGKLTKV-GVF------NAK-CCFYLRNFRHLKHQGktrisIHTSVLIDAMTGLSTTSSTLEYSAKKE
+DTNAQFTC---R---------------
+>gi|321457503|gb|EFX68588.1| hypothetical protein DAPPUDRAFT_63008 [Daphnia pulex]
+----------VTVQLGDTAFLNCRVLDLqDKTVSWVRRH-EQELHLLTVGMQTYSTD--SRFSLHfQHPNDWRLQIKFARPRDEGIYECQVSIHPPRIYT
+VRLIVAV----PSVEMVDDHGRVIEekiyktGSTIELKCVVSKVPGPTANIMWRHGLRILNYDTSRGGISVKTDLLPYGAVSRLYIANASQRDAGNYTCN
+ISESSWTTVVVHILNGEH
+>gi|149597420|ref|XP_001520231.1| PREDICTED: similar to butyrophilin [Ornithorhynchus anatinus]
+QFSVIGPAEPVLALEGGDTEMPCHLNPKesaeFMEVRWFRSRPSNIV--HLYDNREELFREqmeeyQGRteLVRDaMDYGSVAVRLLNVRVSDEGNYHCS
+FYDGNTVDRAPlELQVVGSTAQCSIFMEHF-----SWISLILDLFP-DWIPDlfP-ILQMRelSEGGVNIKCP--KSYGIGHTCTMFSLddifgnfisap
+lfptaLSLMVALGVT---LPVLGLIIAGglyLIWKQNMDIEKLLVklT
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+Q 1 4413 * 1466 4564 * 4625 4227 * * 3219 4595 * 4647 2538 4279 4557 * * * * 1
+ 0 * * * * * * 6618 0 0
+
+I 2 3264 * 5097 * 2994 * * 3427 * 1732 * * 4177 4123 4959 * 4148 2776 * * 2
+ 0 * * * * * * 8265 0 0
+
+V 3 5432 * 4702 3230 * 3869 4855 * 3181 4745 * 6058 * 2645 5528 3412 3142 2660 5692 * 3
+ 0 * * * * * * 8999 0 0
+
+S 4 4204 * * * 2858 * * 2682 4656 2257 5906 * * 5627 * 5842 5711 1685 5757 * 4
+ 0 * * * * * * 9205 0 0
+
+T 5 * * * 3089 5974 5848 4540 2898 4297 4388 5318 4398 * 4908 5102 5815 1571 3571 * * 5
+ 0 * * * * * * 9442 0 0
+
+Q 6 4510 * * 3073 * 4050 5887 3833 3545 3168 4139 * 4262 2453 3043 5861 6291 4319 * * 6
+ 117 * 3684 * * * * 9607 0 0
+
+S 7 3337 * 4612 4112 6269 4542 * 4283 6447 5197 6217 4923 2660 4524 5022 2073 3359 4559 * * 7
+ 44 5044 * 0 * 0 * 9762 1191 1817
+
+P 8 4341 * 5022 * 5490 4515 5673 6526 4062 6285 * 5563 1231 3446 5381 2898 5204 5240 * * 8
+ 0 * * * * * * 10048 0 0
+
+A 9 4024 * 6260 3313 * 3780 5252 6687 3633 6061 5357 5514 4875 3824 2794 2211 4186 4713 * 5932 9
+ 62 5601 5531 2025 407 * * 10053 1148 0
+
+I 10 5086 * 3853 3316 5459 4161 4745 3818 5628 3729 * 3717 2660 * 6312 3456 3356 4275 * 5002 10
+ 14 * 6670 * * 0 * 10132 0 1194
+
+M 11 5024 6750 6866 4000 4352 6402 * 3160 4955 2862 5750 6530 6285 3680 5221 5321 4174 1777 5854 6671 11
+ 0 * * * * 0 * 10187 0 1000
+
+S 12 4669 * 5042 4115 4026 5284 6948 3889 4964 3864 5196 3647 5547 4373 4830 2807 2580 4096 6671 5724 12
+ 12 6974 * 3907 100 * * 10355 1013 0
+
+A 13 2928 * * 5767 5205 3874 * 3879 4592 3135 6476 5835 6683 5237 5614 5094 4309 1491 * 6528 13
+ 0 * * * * * * 10351 0 0
+
+S 14 3813 * 5735 4160 4329 5081 5184 3892 3368 3282 6619 5026 5083 3472 3281 4838 5229 3095 * 4708 14
+ 0 * * * * * * 10382 0 0
+
+P 15 4950 * 5617 1967 5648 6569 6949 5208 5300 2871 * 5620 4249 4249 3926 3459 4076 3164 * 6559 15
+ 0 * * * * * * 10456 0 0
+
+G 16 * * 4538 5257 * 461 5681 * 4442 6667 * 4112 * * 5230 4865 * * * 6591 16
+ 0 * * * * * * 10517 0 0
+
+E 17 6733 * 2977 1950 * 3500 5800 6595 3761 5414 6397 4908 * 3613 4332 2790 4547 7162 * 5652 17
+ 13 6781 * 0 * * * 10552 1000 0
+
+K 18 4713 5414 3358 4215 6595 6870 5278 * 4231 6850 * 3058 3263 5915 4511 2450 2531 5382 * 5979 18
+ 14 6721 * 0 * * * 10552 1054 0
+
+V 19 2336 6672 * * 4197 4849 * 3514 7162 3056 6517 * 6676 6625 * * 4612 1264 * * 19
+ 0 * * * * * * 10552 0 0
+
+T 20 5854 * * 3122 5846 * 4735 3284 4856 4811 * 4353 6399 4218 3821 4054 1915 3070 * 6595 20
+ 0 * * * * * * 10552 0 0
+
+M 21 6744 * * * 3173 * 7684 2364 * 879 3957 * * * * * * 3786 * * 21
+ 0 * * * * * * 10552 0 0
+
+T 22 4595 * 4811 3908 5793 5812 5733 4899 6721 4742 5792 3753 2284 4634 3740 2982 2758 5814 * 5917 22
+ 0 * * * * * * 10552 0 0
+
+C 23 4329 187 * * * * * 6701 * 5753 * * * * 7684 * * 5141 * 6614 23
+ 0 * * * * * * 10552 0 0
+
+S 24 5996 7684 3800 3231 6899 4601 5819 4585 3676 3767 7057 3562 5328 4499 3836 3302 3118 3861 * 5395 24
+ 29 5651 * 574 1607 * * 10552 1230 0
+
+A 25 2422 6517 7057 * 3146 6820 5813 3097 7420 3455 * 4490 * 6607 * 5748 5145 1811 * 4187 25
+ 0 * * * * * * 10552 0 0
+
+S 26 4430 * 3651 3981 5992 * 5222 5259 3750 4555 5843 4902 3911 3979 4987 2411 2389 6707 6136 6625 26
+ 27 6772 6781 0 * * * 10552 1000 0
+
+S 27 3863 6580 3254 5780 6902 2019 * 6685 4119 4696 5552 3893 3884 5259 * 3209 3935 4131 * 5391 27
+ 15 6602 * 1000 1000 * 0 10542 1020 1000
+
+S 28 3440 6842 3985 3846 3959 3800 6070 5010 4587 4079 6881 4326 3709 4255 7157 2718 5970 4070 * 4012 28
+ 3361 172 6080 1371 705 * 0 10542 9623 1000
+
+R 29 3727 * 3588 4072 6706 4718 3883 5637 4168 3282 5832 4221 3721 6285 4770 3038 4156 3527 5893 6645 29
+ 55 4978 7525 1582 586 727 1336 10510 1424 1708
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+ 65 * 4500 0 * 3044 186 10468 1000 2257
+
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+ 27 * 5777 * * * * 9142 0 0
+
+K 204 2266 * 5569 5776 3810 5808 5478 4433 2643 3175 * 5735 * 5287 3054 4739 4323 3800 * * 204
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+ 0 * * * * * 0 9078 0 1110
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+F 206 * * * * 2922 * * 2052 6063 2455 * * * 5554 * * 4575 2208 4685 3170 206
+ 45 5033 * 1903 449 0 * 9015 1283 1110
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+N 207 5124 * 4328 4323 * 5428 4443 * 5542 * * 2559 3626 * 3022 2323 2461 5293 * * 207
+ 27 5739 * 0 * * * 8561 1110 0
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+R 208 * * 4319 * 4644 * 4468 * 2536 1362 * * 3822 4260 3491 * 4313 4606 * * 208
+ 0 * * * * 0 * 7064 0 1110
+
+G 209 3397 * 2366 3381 * 4403 * * * * * * 2698 * * 1589 3622 * * * 209
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+E 210 * * * 758 * * * * * * * 2582 * 2050 * * * * * * 210
+ 0 * * 0 * * * 3919 0 0
+
+//
+�HHsearch 1.5
+NAME 0b91ebac43769ec865264a8281966ca6
+FAM
+FILE 0b91ebac43769ec865264a8281966ca6
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:17:59 2013
+LENG 119 match states, 119 columns in multiple alignment
+FILT 132 out of 578 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHH
+HHHCCCCHHHHCCCCCCCC
+>ss_conf PSIPRED confidence values
+9899999999874899886999746877689999985523768987458899997026798762361489997995788999996999999979999999
+9978577888288966899
+>Consensus
+xlxqlxxMixxxxxxxxxxxxyxxYGCxCgxgGxGxPvDxiDxcCxxhxxCyxxxxxxxxCxxxxxxYxxxxxxxxxxCxxxxxxCxxxlCeCDxxxAxc
+xxxxxynxxxxxxxxxxxc
+>0b91ebac43769ec865264a8281966ca6
+HLVQFNGMIRCTIPGSIPWWDYSDYGCYCGSGGSGTPVDELDRCCQVHDNCYTQAQQLTECSPYSKRYSYDCSEGTLTCKADNDECAAFVCDCDRVAAIC
+FAGAPYNKENINIDTTTRC
+>gi|149410126|ref|XP_001508765.1| PREDICTED: similar to otoconin [Ornithorhynchus anatinus]
+-LPRLGEMLFCL--TQRCPEEFESVGCFCGPEERGASADILDSCCFSHHCCLEQVKT-MGCELErSSQVEVVCLDHKPECTG-WNACEKLLCSCDRTAAE
+CLAAASFNNSLPLP------
+>gi|313237065|emb|CBY25148.1| unnamed protein product [Oikopleura dioica]
+-YWQLMEQILYFNP-AFDQRKFWAYGCNCLLLgdrpmsdpGYGPPVDALDTVCKHYKDCAQCAKKKhgDECINEFKKYKFSEsfyeKGNASMCKNEANSC
+ERDLCECDFAFAKAHVQAigSFVTDYHLFW-----
+>gi|313225325|emb|CBY06799.1| unnamed protein product [Oikopleura dioica]
+-LLQLAEMVKQVQRTDYLFERYCFYGCHCIPGyavhdstaGKGPAQDGIDSVCSRLKQCYWCANDEeeGQCDGTMKSYSWNVVDndkdgkiDDIVCYNQP
+GSCRWKLCQCDRQFALQLRDVeeTYNPLL---------
+>gi|313238038|emb|CBY13157.1| unnamed protein product [Oikopleura dioica]
+--TNFRNMWHEYGYTPQQLTNLYGYGCYCLNlGGSpmsglnelnGvKPMDDIDRTCFHWTRCNRCAAIDhgEKCKAEDRSYDFEIDpdTKDITCKEKKNT
+CKWAICECDKEQVLSMKQ----------------
+>gi|313220609|emb|CBY31456.1| unnamed protein product [Oikopleura dioica]gi|313226182|emb|CBY21325.1| unnamed protein product [Oikopleura dioica]
+-LRQFRRLYTFYLVGyRLRPAHLVQYGCWCFPRgqlimGYGQPIDGIDATCRNHQLCLNCVGLDtnYECNPHTQPYRVYgqiyQNGRRLMCKDPPGSCAW
+LACQCDVNMVTTSIIeslKGYKPRFWMYDPG---
+>gi|313225706|emb|CBY07180.1| unnamed protein product [Oikopleura dioica]
+-------------------YEFHNYGCYCVApsdtkKMRGRPVDEIDRKLVakfplvknthfvtpVHFLTTDAIRKQWG--FSILIYRYKItktsSGNRI
+ECTNAADTCAYASCMCDKGLAEDLGTllmngVKVNSTYREHDGE---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 5365 0 0
+
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+ 0 * * * * * * 5908 0 0
+
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+ 0 * * * * * * 6211 0 0
+
+Q 4 6474 * 3962 3753 6554 * 5746 * * * * 2210 * 993 4345 5420 5062 * * * 4
+ 0 * * * * * * 6280 0 0
+
+F 5 * * * 6329 1232 * * 5455 * 957 5384 * * * * * * * * * 5
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 0 * * * * * * 6365 0 0
+
+Y 28 5797 * * * 3303 5245 2213 * 7122 5866 * 4102 * 7165 * 5517 * * 2556 1485 28
+ 16 * 6486 * * * * 6365 0 0
+
+C 29 * 113 * * * 5252 * * * 5861 * * * * * 5244 7482 * * * 29
+ 25 5861 * 2807 222 0 * 6345 1054 1016
+
+G 30 6798 * 6873 * 3743 1056 5192 7085 * 3409 5924 3913 * 4300 5380 4115 5184 6240 5173 6147 30
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+
+S 31 3894 * * 7306 3217 5541 * 3910 5673 2216 4748 5971 2607 4785 4269 4131 6497 6278 4287 4101 31
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+
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+
+G 33 4424 6799 7136 6348 7112 519 * * 7455 * 4748 5532 4973 6911 4542 5438 5029 7062 * 6454 33
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+
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+
+G 35 7069 * 6981 * * 156 * * 7175 * 7324 5508 * * 5493 6828 7065 7161 * 7193 35
+ 147 3365 * 103 3862 1379 700 6354 1764 1125
+
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+
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+
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+
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+
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+
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+
+Q 46 5541 * * 7169 3590 * 3473 5819 2298 3804 4326 6762 * 2466 2497 7089 * 4532 * 4711 46
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+H 48 6880 * * * 4320 * 850 * 7298 3003 * * * 7230 4566 6535 * * 3982 2913 48
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+D 49 4348 * 1450 6311 5618 4977 4123 7608 2489 5361 * 4879 6543 4430 3744 4697 5980 6744 6603 6005 49
+ 0 * * * * * * 6384 0 0
+
+N 50 5719 2763 3707 3397 5672 5878 5726 6828 3186 4645 7308 4122 * 3280 2992 4646 4162 5019 6056 6162 50
+ 27 6190 7602 1585 585 * * 6384 1030 0
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+C 51 6597 75 * * * 6540 * * * * * * * * 7084 6701 6337 * * * 51
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+
+Y 52 7207 * * * * 6626 3792 5209 * 3110 * 6744 * 4251 * 6695 4702 5499 6340 681 52
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+
+T 53 3389 6848 3131 3489 * 3527 4553 * 2116 * 5970 4105 * 3954 4075 3447 5098 7256 7113 * 53
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+
+Q 54 4144 1235 4246 3493 * 5608 7173 7419 3158 6793 * 6297 * 3979 3808 4973 6556 5213 7417 * 54
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+
+A 55 1806 * 6566 * 7106 7372 7324 3147 6809 1941 6318 5897 6775 * * 5990 4368 2328 * * 55
+ 124 * 3607 * * 2342 317 6390 0 1164
+
+Q 56 3783 * 5320 3631 5888 4754 4953 4649 2516 3833 4418 3959 5490 3251 3063 5988 5467 4666 * 6085 56
+ 100 7391 4028 2000 415 3158 171 6366 1000 1727
+
+Q 57 3746 6551 3602 2802 5147 5558 5945 4249 2907 3441 3987 4104 * 4336 4582 4081 4463 5134 * * 57
+ 471 3746 2294 1230 801 1546 605 6357 1434 2049
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+L 58 6074 * 2044 2593 * 5065 4556 5051 3495 6061 5637 5567 * 3914 4002 3262 3580 6272 * * 58
+ 824 1201 * 1357 714 247 2666 6122 3095 2865
+
+T 59 5908 * 3940 3170 5738 3102 3949 6768 3483 4758 5254 5478 3919 5484 4586 3432 3361 6810 6235 3631 59
+ 51 4859 * 1028 972 1158 858 6363 1166 1275
+
+E 60 4926 * 3147 2626 * 2794 6283 4423 3679 * 4751 4745 5778 5067 3868 3236 3639 5400 6726 * 60
+ 27 * 5754 0 * 1561 597 6354 1004 1126
+
+C 61 5562 183 * * 6699 * * * * 5009 6659 * * * * 5452 6961 5909 * * 61
+ 173 3893 4449 1917 444 2455 291 6340 1451 1190
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+
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+
+C 72 4445 1916 * 5157 2881 4810 * 4080 5305 3420 4418 * 5186 4557 * 5437 4936 3851 4962 4722 72
+ 330 2504 5156 1768 501 3422 141 6346 2095 1418
+
+S 73 5244 * 3398 3359 5991 3458 4436 4077 4609 4427 * 3653 * 3462 4505 2869 7081 3231 6773 7069 73
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+E 74 4221 6695 2685 3165 * 3201 7106 6614 3845 * * 2524 4377 4755 4913 3202 4468 7096 * 5602 74
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+G 75 4197 5431 3788 4969 * 1845 4810 * 3478 * * 3270 7081 4034 3185 4091 5841 5258 5584 6783 75
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+T 76 4498 7360 4105 3126 5042 4458 5499 5716 3139 * 5710 4062 5905 3909 3312 3359 3305 3856 * 5973 76
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+
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+
+C 79 5986 125 * * * 6586 * * * * * * 6562 * * 5191 6868 6589 * * 79
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+K 80 4102 7455 3572 4640 * 3456 5757 5899 3555 3582 5466 5117 7229 6829 4262 2307 3146 4265 * 5014 80
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+A 104 2209 * 4800 4520 5167 7030 3843 6581 4634 4917 5477 3152 * 4334 * 2699 4498 4332 * 3594 104
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+P 105 5594 * 4041 3467 7046 5669 4946 5295 4181 5630 6855 6671 2786 6570 5527 2676 2325 3109 * * 105
+ 0 * * * * * * 6307 0 0
+
+Y 106 * 5528 * 5389 2277 * 6809 5035 5867 * * * * * * * * 4985 3379 827 106
+ 0 * * * * * * 6296 0 0
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+N 107 5361 * 2939 4708 * * 4791 * 4871 * * 924 4084 5370 5146 4043 6698 5167 * * 107
+ 15 * 6609 * * * * 6292 0 0
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+K 108 4784 5339 3990 3061 6775 * 5828 5425 2605 5327 5775 4276 2895 4930 4285 3296 4118 4565 6159 6275 108
+ 21 6145 * 2322 322 0 * 6278 1029 1003
+
+E 109 3890 * 3388 3354 5647 4182 4956 * 2100 4899 * 3113 * 5374 4275 3294 4288 6570 * 6611 109
+ 0 * * * * * * 6290 0 0
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+N 110 * * * 6510 2694 * 3336 5738 6469 2931 6349 2993 * 5646 * * * * * 1264 110
+ 0 * * * * * * 6220 0 0
+
+I 111 4609 * 4754 4364 3726 6443 2991 5195 2912 3933 6060 4692 5965 4417 2783 4421 4582 6502 5120 4477 111
+ 0 * * * * * * 6173 0 0
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+N 112 5779 * 4204 4211 3112 2851 3753 6177 * 3558 4943 2847 6400 5145 4862 3343 5052 4667 * 4949 112
+ 0 * * * * * * 6127 0 0
+
+I 113 * 5991 * 6072 1794 5311 4808 3784 * 3016 5196 5171 5592 * * 5503 * 3995 * 1925 113
+ 0 * * * * * * 6130 0 0
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+D 114 * * 1550 * 5385 5030 5445 6196 5250 5883 5666 3401 2805 5015 5878 3503 5067 * 4000 4710 114
+ 0 * * * * * * 6112 0 0
+
+T 115 3620 * 5204 * * 3725 * * 3112 * * 3504 5032 3711 3114 2743 2744 4715 * 4237 115
+ 0 * * * * * * 5820 0 0
+
+T 116 * * 3511 3750 5521 3478 * 3872 2713 5199 5353 3469 4834 4288 4370 2437 4492 * * * 116
+ 0 * * * * * * 5522 0 0
+
+T 117 3684 * * 2603 * * * * 1630 4726 4824 * 3536 * 3606 2676 4766 * * * 117
+ 636 * 1487 * * * * 4589 0 0
+
+R 118 * * * * * * 3462 * 2355 * * 2843 * * 1785 * 3651 * * 2289 118
+ 0 * * * * 0 * 3453 0 1314
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+C 119 * 0 * * * * * * * * * * * * * * * * * * 119
+ 0 * * 0 * * * 4006 0 0
+
+//
+�HHsearch 1.5
+NAME 0c68c5d75cc2ae618e6e5f1010b542af
+FAM
+FILE 0c68c5d75cc2ae618e6e5f1010b542af
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:13:12 2013
+LENG 91 match states, 91 columns in multiple alignment
+FILT 147 out of 815 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCC
+>ss_conf PSIPRED confidence values
+9742113323017564504888855334432468987376578751557765688850321474313465067898705677562113049
+>Consensus
+xxxxlxxxHxxxxxCxxCHxxxxxxxxxxxxxxxCxxCHxxxxxxxxxhxxhxxxxxCxxCHxxHxxxxxxxxxCxxCHxxxxxxxxxxxx
+>0c68c5d75cc2ae618e6e5f1010b542af
+ADQKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTSASVLKK
+>gi|303257051|ref|ZP_07343065.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium 1_1_47]gi|330999581|ref|ZP_08323292.1| hypothetical protein HMPREF9439_00917 [Parasutterella excrementihominis YIT 11859]gi|302860542|gb|EFL83619.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium 1_1_47]gi|329574434|gb|EGG56004.1| hypothetical protein HMPREF9439_00917 [Parasutterella excrementihominis YIT 11859]
+-AQQVKPYHQNIKDCAACHTKENAVAGnqfVTPDNKACLTCHQSYAAVAEktknlkngepnPHASHHygEGIACTACHSEHK---TSQVYCNNCHE----
+-------
+>gi|253701708|ref|YP_003022897.1| cytochrome C family protein [Geobacter sp. M21]gi|251776558|gb|ACT19139.1| cytochrome C family protein [Geobacter sp. M21]
+-----RSEHLPFVekRCSDCHNSNQgagsaseEGLLVKPREELCFGCHKNLLNKPFHHGPAA-VGDCLACHLPHDSAnpallvLSREKLCAKCHTERRKA
+QR----
+>gi|182412667|ref|YP_001817733.1| cytochrome b subunit of formate dehydrogenase-like protein [Opitutus terrae PB90-1]gi|177839881|gb|ACB74133.1| cytochrome b subunit of formate dehydrogenase-like protein [Opitutus terrae PB90-1]
+--KVGASVHG-SLECVDCHEGIdgeaSPH-RKQRVAVDCFSCHDDTAPKH-KFHSRLqldprpeGkDTSCTECHGTHEVQrvkSRDFAMskprltegCGQ
+CHAQAR--------
+>gi|308049069|ref|YP_003912635.1| decaheme c-type cytochrome, OmcA/MtrC family [Ferrimonas balearica DSM 9799]gi|307631259|gb|ADN75561.1| decaheme c-type cytochrome, OmcA/MtrC family [Ferrimonas balearica DSM 9799]
+-------------ACTA---chvEGE--plttRHSsYFEAETCINCH--neDRMtgkrASFqhlV----htihNTaatftdkndreytgqaaeallQNNC
+----qachVASEElaewgnwtRVPTKET------csachnN----------
+>gi|291286709|ref|YP_003503525.1| cytochrome C family protein [Denitrovibrio acetiphilus DSM 12809]gi|290883869|gb|ADD67569.1| cytochrome C family protein [Denitrovibrio acetiphilus DSM 12809]
+---FRRGRSSEKlVTCATCHDVHSKDknfLRIeAETGELCLTCHNEKEMVE--KTLHGKqklDKSCLSCHKVHNSEtkrllvKPDNDGCLDCHKKGGSAE
+KM---
+>gi|291279066|ref|YP_003495901.1| multiheme c-type cytochrome [Deferribacter desulfuricans SSM1]gi|290753768|dbj|BAI80145.1| multiheme c-type cytochrome [Deferribacter desulfuricans SSM1]
+--SMLKDIHYEKGlKCNNCHDMI-SLSKGDIATKRCNECHTINTDIIEHSiNAHIEKMECYACHSSWA-------------------------
+>gi|197121374|ref|YP_002133325.1| cytochrome C nitrate reductase, small subunit [Anaeromyxobacter sp. K]gi|220916077|ref|YP_002491381.1| cytochrome c nitrate reductase, small subunit [Anaeromyxobacter dehalogenans 2CP-1]gi|196171223|gb|ACG72196.1| cytochrome c nitrate reductase, small subunit [Anaeromyxobacter sp. K]gi|219953931|gb|ACL64315.1| cytochrome c nitrate reductase, small subunit [Anaeromyxobacter dehalogenans 2CP-1]
+-------------------------------PATCSNCHVMSGHYAgWQASAHHAVATCNDCHTPAA-------------------------
+>gi|91203484|emb|CAJ71137.1| hypothetical heme protein [Candidatus Kuenenia stuttgartiensis]
+-GVFLHNRHSPIQniECCECHNNDPANtkTHGgliieendckkchhnEATNEDCLKCHSAVNDYRngsfryaGIHSPVTGapdwmykAVLCTDCHKQEEN
+NflfRDTRSICIECHNDDYG-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 0 * * * * * * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+D 2 1661 * 2728 4574 * 2043 * * * * * 3150 2881 * * * * * * * 2
+ 0 * * * * * * 4919 0 0
+
+Q 3 2145 * 5110 4911 * 3043 * 5175 3224 * 5173 3665 4855 2724 * 4966 4059 3811 * * 3
+ 0 * * * * * * 5852 0 0
+
+K 4 * 5502 5607 4710 3368 3470 4420 * 5754 4491 4535 3243 3607 3553 * 5368 2542 3902 * 4517 4
+ 0 * * * * * * 6554 0 0
+
+L 5 5592 * * * 5572 3332 * 5939 4587 1288 2947 * 4289 * 5481 4629 5894 2930 * * 5
+ 0 * * * * * * 6708 0 0
+
+S 6 1567 * 6366 5056 * 4234 4403 * 3168 4952 6594 4797 4140 6271 3394 2924 4907 * * * 6
+ 63 4547 * 1911 446 * * 6976 1221 0
+
+D 7 4158 * 2718 4775 4420 2665 6362 * 4446 * * 3929 5671 * 5489 1936 5255 4011 6339 5403 7
+ 0 * * * * * * 7106 0 0
+
+F 8 3104 * * 5473 4361 5169 4607 3535 4925 3351 5450 4473 6454 4135 3379 4185 5008 2535 * 4816 8
+ 14 6730 * 571 1614 * * 7164 1058 0
+
+H 9 6573 * * * * * 98 * 6673 * 6375 * * * 6434 6514 * 6519 * * 9
+ 14 6714 * 1000 1000 * * 7225 1000 0
+
+A 10 1452 * 5735 4411 * 3328 6456 6385 3592 5848 5446 6777 3783 4055 4928 4278 4663 4701 * 5762 10
+ 129 * 3543 * * 0 * 7261 0 1000
+
+E 11 3495 * 3240 2785 5842 5978 * * 4229 3532 * 4676 2166 3971 5468 5738 4552 3859 * 6853 11
+ 143 5479 3794 0 * 0 * 7241 1047 1447
+
+S 12 2730 * 3903 6506 4426 5632 5616 4414 3678 3575 3028 3641 5643 6699 4342 4100 6493 4270 * 3785 12
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+
+G 13 3614 * 4042 4176 * 1871 * 3707 5015 3107 4954 5447 * 4229 5382 4353 * 3012 * * 13
+ 602 1551 * 307 2383 0 * 7382 3498 1127
+
+G 14 3274 * 3035 3803 6779 2814 * 6977 4369 * * 3728 4724 3962 3831 3404 3027 5971 * 6110 14
+ 32 5514 * 1357 714 0 * 7464 1145 1016
+
+C 15 * 35 * * * * * * * * * 5373 * * * * * * * * 15
+ 0 * * * * * * 7481 0 0
+
+E 16 2832 6841 * 3257 5511 5576 5073 4211 4659 3202 7053 3727 6939 4134 * 3877 2600 3470 * * 16
+ 9 7274 * 0 * * * 7481 1000 0
+
+S 17 3053 * 2208 4031 * 4909 7112 5929 4562 6588 6891 4259 4605 4820 5117 2172 3720 5602 * 6978 17
+ 16 * 6526 * * * * 7481 0 0
+
+C 18 * 35 * * * * * * * * 5365 * * * * * * * * * 18
+ 0 * * 0 * 587 1581 7472 1028 1075
+
+H 19 * * * * * * 0 * * * * * * * * * * * * * 19
+ 10 7128 * 0 * * 0 7476 1000 1000
+
+K 20 3905 * 2477 3283 * 2318 5369 6089 4409 4951 6986 4108 5836 4302 * 3715 3195 6318 * * 20
+ 61 5026 6521 1585 585 0 * 7476 1216 1000
+
+D 21 3157 * 2614 3145 * 3511 * 6858 5641 4960 6229 4250 2128 5329 6810 3585 5108 5485 * * 21
+ 67 4756 6867 294 2438 0 * 7447 1249 1019
+
+G 22 4533 * 4023 3345 7100 3316 2015 3733 4167 5342 7095 4501 6229 4321 4636 4579 4225 5335 * 6488 22
+ 239 3394 4118 2284 331 1038 963 7456 1684 1074
+
+T 23 3903 * 3660 2857 5971 2839 5946 5240 4120 4657 * 4480 4105 3724 4528 3370 3776 6151 * 6089 23
+ 357 2326 5651 3026 189 126 3582 7452 2426 1532
+
+P 24 3991 * 4445 4085 4993 4026 6659 6723 4164 * 5609 5121 1313 4939 6073 3212 5241 6846 5507 * 24
+ 231 3030 5278 1105 902 2335 319 7467 1845 1190
+
+S 25 4704 * 3625 4447 4762 5465 3025 4175 3741 3205 5288 3124 5389 5111 5055 3598 5007 3988 * 6163 25
+ 418 2679 3390 2347 316 1285 762 7448 2364 1407
+
+A 26 2893 * 3964 4985 6710 4428 7121 6637 3159 2689 6712 4063 4004 4616 5451 3740 3634 4094 * 5629 26
+ 234 4622 3194 1528 614 1906 448 7348 1236 2020
+
+D 27 3591 * 2381 4121 5747 3830 3896 5758 2688 3167 4337 6930 5182 6725 4290 4704 5568 5557 * * 27
+ 300 2474 6992 1753 508 919 1086 7271 2055 2506
+
+G 28 3858 * 6688 4680 5279 2110 * 4465 2986 4294 5032 5045 3866 4663 4096 4770 4692 3467 * 6767 28
+ 458 2158 4387 2695 242 925 1080 7355 2545 1754
+
+A 29 2496 * 4392 3157 4280 3945 * 6881 3054 4676 5990 5436 5688 4262 4011 4103 3558 4917 * 5060 29
+ 111 3964 6647 2450 292 815 1212 7432 1465 1716
+
+F 30 2803 * 4255 3720 4600 4915 5078 6156 3955 5024 5862 5009 2816 5513 5005 4271 4274 3070 6735 4643 30
+ 31 5555 * 1087 918 245 2678 7433 1190 1350
+
+E 31 3222 * 3064 2959 * 3570 * 4416 4591 6184 4894 5181 5063 4229 4513 3295 3829 3511 * 6627 31
+ 85 4770 5619 1617 569 0 * 7497 1230 1000
+
+F 32 3233 * 3876 4763 6181 4481 6925 4264 4493 5999 5277 2356 3398 6154 4105 3683 3852 4063 * 6085 32
+ 63 4839 7012 2256 339 0 * 7493 1212 1198
+
+A 33 2218 * 3964 2302 * 6137 * * 3251 5785 * 4555 5394 3723 5546 3715 3716 3939 * * 33
+ 8 * 7440 * * 0 * 7509 0 1000
+
+Q 34 3407 * 3819 5659 4783 4245 * 4264 4248 2155 6051 5463 * 4269 5254 3338 2966 4446 * 6913 34
+ 0 * * * * 0 * 7509 0 1000
+
+C 35 * 0 * * * * * * * * * * * * * * * * * * 35
+ 0 * * * * * * 7514 0 0
+
+Q 36 3623 * * 4899 4015 3765 * 3512 6914 1726 6090 6026 * 4165 6180 5418 3681 3243 * 4472 36
+ 53 4791 * 679 1413 * * 7514 1259 0
+
+S 37 4117 * 4124 3463 * 3412 * * 3511 * * 3929 * 3097 4575 2262 3072 4269 * 6796 37
+ 0 * * * * * * 7514 0 0
+
+C 38 * 30 * * * * * * * * * * * * * 5598 * * * * 38
+ 0 * * * * * * 7514 0 0
+
+H 39 * * * * * 5598 30 * * * * * * * * * * * * * 39
+ 64 6228 5054 2347 316 * * 7514 1087 0
+
+G 40 4089 5579 3605 3657 5894 2274 5737 5270 3648 6192 * 4045 4368 3845 4793 4037 3604 5072 * 6685 40
+ 117 4428 4989 434 1946 763 1284 7497 1329 1275
+
+K 41 4472 * 2178 3025 * 3588 6002 7139 4340 6995 5170 3335 4223 4804 7636 2790 3748 * * 6994 41
+ 56 5043 7010 969 1032 327 2302 7486 1220 1392
+
+L 42 4058 * 4410 3438 5176 5129 6788 3654 4225 3098 4575 4931 5607 3547 7159 4368 3827 3856 7403 3265 42
+ 184 3235 6198 1087 918 1285 762 7504 1917 1094
+
+S 43 2515 * 3202 2579 * 5305 5126 * 3580 4682 6022 4468 4196 4053 4107 3796 5075 5068 7042 * 43
+ 53 4792 * 2817 221 608 1539 7501 1238 1206
+
+E 44 3004 * 2692 2736 6266 3965 5537 6267 3997 6220 4835 3498 4878 4077 4379 4015 5151 5809 * 6621 44
+ 334 2275 * 1149 865 * 0 7510 2699 1028
+
+M 45 4771 * 6063 4368 3382 5567 5792 3538 4261 2235 3512 6146 5106 4598 6103 4957 5491 3302 6852 3986 45
+ 55 5333 6299 646 1470 * 0 7510 1163 1028
+
+D 46 1947 * 3295 4174 4049 4945 4862 5987 4055 5005 6136 4913 4674 4708 4823 3904 5300 3746 * 5499 46
+ 907 1261 4343 2446 292 954 1047 7511 4053 1128
+
+A 47 3953 * 5604 4451 3527 4570 6853 * 3521 5164 * 2363 4241 6175 5184 2983 5269 4416 3453 4740 47
+ 227 2779 * 3118 176 856 1160 7464 2114 1547
+
+V 48 3321 6567 6356 7065 * 6185 4210 5022 3751 3467 6149 6020 2210 4718 4829 3853 3255 3450 * 5504 48
+ 186 3321 5569 3420 142 589 1577 7501 1779 1213
+
+H 49 4654 * 6299 5454 5486 4211 834 6846 5308 * * 4805 5560 5386 3973 4247 4974 5353 * * 49
+ 144 3601 6326 848 1170 * 0 7482 1647 1202
+
+K 50 4140 * 3365 4399 5535 3242 5263 6090 3801 5735 5577 3247 3867 5299 5033 2524 3721 5752 * 5547 50
+ 211 3268 4963 3087 181 921 1084 7487 1875 1301
+
+P 51 3346 * 4717 5571 4875 5274 4649 4470 3558 3957 6238 4170 2344 6045 7061 3550 4221 3047 * * 51
+ 93 4156 7313 1475 643 1840 472 7441 1434 1431
+
+H 52 3725 * 5908 5814 7107 5154 820 5508 7617 7070 6094 4602 6940 6105 4237 7181 6561 4075 * 4459 52
+ 81 5496 4935 2064 394 543 1672 7463 1143 1352
+
+D 53 2302 * 3704 4317 4524 3546 4131 4721 6088 4117 7050 5264 3528 4447 6097 5264 5412 4572 4606 4046 53
+ 407 2166 5443 2429 296 299 2419 7467 2760 1324
+
+G 54 3696 * 3994 3235 5789 1975 * * 3318 5633 * 4531 4383 3809 4126 3223 4873 * * * 54
+ 654 1658 4392 1777 498 0 * 7482 3496 1237
+
+N 55 3905 * 3348 3534 6026 2963 5831 5585 2845 5406 6897 4288 4802 3343 4472 3847 4853 4226 * 7068 55
+ 131 4230 4911 1213 814 1656 551 7508 1381 1319
+
+L 56 2806 * 4979 5109 6015 3787 * 3580 5460 2788 3104 5681 4666 5201 6686 4851 3980 2765 * * 56
+ 44 5060 * 1590 583 0 * 7447 1179 1462
+
+V 57 3504 * 3141 3209 7073 4179 * 6711 6745 5327 7037 3681 4897 4791 4107 2576 3045 4147 * 5303 57
+ 19 6265 * 591 1573 * * 7514 1051 0
+
+C 58 * 0 * * * * * * * * * * * * * * * * * * 58
+ 7 * 7686 * * * * 7514 0 0
+
+A 59 3113 * 7250 6064 7030 5460 6318 4800 * 3224 4716 3869 * 5370 5098 3674 1761 3019 6346 6926 59
+ 0 * * * * * 0 7510 0 1000
+
+D 60 2934 * 1857 3367 * 4366 * 6292 5775 7124 * 3509 6875 6036 * 2709 3256 4870 * 7376 60
+ 0 * * * * * 0 7510 0 1000
+
+C 61 * 0 * * * * * * * * * * * * * * * * * * 61
+ 0 * * * * * 0 7510 0 1000
+
+H 62 * * * * * * 0 * * * * * * * * * * * * * 62
+ 50 4868 * 1415 678 0 * 7510 1261 1000
+
+A 63 3685 * 3386 4897 5712 3874 5397 6402 2921 3776 4382 2773 * 4155 6210 3095 4473 4675 * * 63
+ 15 * 6640 * * * * 7514 0 0
+
+V 64 3624 * 5785 3228 * 3368 * 4964 5410 4936 4128 5598 1602 5482 * 4379 4776 3522 7032 * 64
+ 15 8165 7128 0 * * 0 7491 1000 1012
+
+H 65 6241 * 6667 5491 7107 * 325 * 5392 7009 * 6523 7038 5332 5515 5455 6519 * 5723 * 65
+ 16 7631 7340 1000 1000 878 1134 7482 1028 1078
+
+D 66 2814 * 3249 3075 6994 2676 6996 * 3815 5502 7166 4636 6521 3810 4352 3614 4386 4476 * 5975 66
+ 443 4754 2138 3218 164 1108 899 7497 1213 1056
+
+M 67 3379 * 5124 3702 5094 3829 * 2951 3612 6735 4860 4358 5877 4962 6442 2220 4653 3645 * * 67
+ 215 3222 4996 2503 280 3525 131 7312 1637 2995
+
+N 68 3402 * 3217 3331 6524 3991 6691 * 2910 * * 3743 5565 3962 4738 4209 2977 4965 6588 4035 68
+ 1241 916 4415 2851 215 3732 113 7298 3951 3031
+
+V 69 3270 * 5250 4372 4986 5261 * 5534 2374 4627 4437 3874 5668 4081 4586 4766 4978 2541 6262 5577 69
+ 224 2912 6521 3462 137 242 2696 7264 1729 3140
+
+G 70 3153 * 4069 3597 * 3813 7302 * 2972 5041 4636 5993 2385 4087 5034 4128 3301 6096 * * 70
+ 138 3451 * 1499 630 * 0 7493 1645 1376
+
+Q 71 2977 * 4340 6092 5976 4366 * 3638 4595 6204 5464 5028 3324 3826 4402 2229 3930 4242 * 7228 71
+ 85 4425 6564 1934 438 * 0 7478 1282 1440
+
+K 72 4474 * 4064 3530 6099 6027 5362 * 3093 * 4938 3043 3318 3776 3543 4343 3534 3496 * * 72
+ 10 * 7228 * * 0 * 7452 0 1561
+
+P 73 3316 * 3200 2958 6988 4648 5805 5440 3531 4419 5362 3131 3813 4282 4374 4551 4777 4271 * * 73
+ 33 5445 * 2765 230 0 * 7534 1109 1009
+
+T 74 3601 * 5451 4952 5481 7251 * 4108 4974 2302 3802 4407 6810 5026 6526 4375 2674 3581 6989 3732 74
+ 38 5596 7575 1824 479 * * 7535 1119 0
+
+C 75 * 0 * * * * * * * * * * * * * * * * * * 75
+ 0 * * * * * 0 7530 0 1000
+
+E 76 3140 * 6407 5115 4956 3865 * 3973 5894 2490 5978 3575 * 5239 6057 3221 3032 4258 * 3976 76
+ 12 6947 * 0 * * 0 7530 1000 1000
+
+S 77 5291 * 3270 3327 * 3812 * 6969 3724 6689 * 3342 * 3058 4285 1955 3835 6868 * * 77
+ 0 * * * * * 0 7530 0 1000
+
+C 78 * 0 * * * * * * * * * * * * * * * * * * 78
+ 0 * * * * * 0 7530 0 1000
+
+H 79 * * * * * * 0 * * * * * * * * * * * * * 79
+ 0 * * * * * 0 7530 0 1000
+
+D 80 3188 * 3416 3234 5772 4189 4100 6756 3946 5091 6061 3592 4061 4803 5624 3467 3097 5283 * 6883 80
+ 12 6952 * 1696 533 0 * 7493 1040 1000
+
+D 81 4000 * 2462 2798 3781 3518 7068 6156 3661 6859 * 3961 5822 4153 4293 3927 5040 4596 6834 7032 81
+ 73 4345 * 1018 982 * * 7451 1241 0
+
+G 82 3867 * 4440 2775 * 3142 4945 4714 2751 4139 6458 3812 4976 3282 4965 * 4132 4908 6554 * 82
+ 0 * * * * * 0 7143 0 1001
+
+R 83 5266 * 6037 6205 4398 4494 6165 * 2760 3711 * 5068 5059 3876 1707 4852 3828 4513 * 4944 83
+ 68 4445 * 0 * 0 * 6928 1149 1001
+
+T 84 3328 * 5128 * * 1717 * * 4303 * * 5044 4490 5180 * 2120 2683 5128 * * 84
+ 0 * * * * * * 6207 0 0
+
+S 85 1821 * * * * 4756 * 3381 4286 4532 * 4280 2982 * 4451 4261 3042 3440 * * 85
+ 112 3749 * 1585 585 * * 5131 1039 0
+
+A 86 2765 * 1953 2231 * * * * 3019 * * 4257 * 2747 * * * 4133 * * 86
+ 0 * * * * * * 4559 0 0
+
+S 87 3455 * * * * 2405 3785 * 3152 * * * * * 3397 1739 * 2831 * * 87
+ 0 * * * * * * 4026 0 0
+
+V 88 * * * * * * * 2751 * * 1959 * * 2948 * * * 1106 * * 88
+ 0 * * * * * * 3524 0 0
+
+L 89 * * * * * * * 1762 * 504 * * * * * * * * * * 89
+ 0 * * * * * * 2582 0 0
+
+K 90 * * * * * * * * 0 * * * * * * * * * * * 90
+ 0 * * * * * * 1000 0 0
+
+K 91 * * * * * * * * 0 * * * * * * * * * * * 91
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 0df5dbed0f36c37f3836e114a8b5c77b
+FAM
+FILE 0df5dbed0f36c37f3836e114a8b5c77b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:17:20 2013
+LENG 55 match states, 55 columns in multiple alignment
+FILT 172 out of 1016 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9655657888765320279978654008888887446778858240228888888
+>Consensus
+xxxxxfxxxxxxxxCxxCgxxgHxxxxCxxxxxxxCxxCgxxGHxxxxCxxxxxx
+>0df5dbed0f36c37f3836e114a8b5c77b
+MQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN
+>gi|73913123|gb|AAZ91500.1| gag protein [Human immunodeficiency virus 1]
+CCREALSGAQGKSl-SVSTVAKRAPSQKLSAPRkkaV----------------------
+>gi|73913077|gb|AAZ91477.1| gag protein [Human immunodeficiency virus 1]
+DAERQFLEARKELSVSTVAKKDTYPGIAGPLEK----------------------
+>gi|270006313|gb|EFA02761.1| hypothetical protein TcasGA2_TC008494 [Tribolium castaneum]
+----------EtafgAgLLRLRKRRalSPTVPEASTgkQP-EIGAAMqllswYRSHGEILQQE------
+>gi|340034816|gb|AEK28751.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 transcript variant 1 [Ornithorhynchus anatinus]
+---------------FADQPAGDFSR-------grgfgrRGGYKGANEEIMADCEKNpgkPE--
+>gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
+--------------NF---SRGGYNNRDEGsdnrgsgRSynndrrDnggdgqNTRWN-------NLDAPPSR--
+>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
+-----------MAGFFGFSKE--------RngGTSANYNRGGSSNY-----KS----
+>gi|73983191|ref|XP_866869.1| PREDICTED: similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) isoform 6 [Canis familiaris]
+-----------NRILRPWQSSETR--SITNTTvfphPLPSLTGGHGGHPMQHNPNGPP-
+>gi|9627015|ref|NP_041259.1| gag protein [Squirrel monkey retrovirus]gi|120891|sp|P21411.3|GAG_SMRVH RecName: Full=Gag polyprotein; Contains: RecName: Full=Core protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Putative nucleocapsid protein p35; Contains: RecName: Full=Probable core protein p10gi|807672|gb|AAA66451.1| gag protein [Squirrel monkey retrovirus-H]
+------------AFAIIVTNPAIFQETAPKKiqpptqlptqpNapqASLiknlgpttkCPRCKKGFHWASECRSR---
+>gi|15242405|ref|NP_199353.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]gi|9758730|dbj|BAB09168.1| replication protein A1-like [Arabidopsis thaliana]gi|332007861|gb|AED95244.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]
+---NQYSSDARSLGgftsCNVCRSNSHVSANCPTlmsepqgqymggt-NAGGGMPRQHVGSY----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * 1812 3190 * * * * 4487 * * 948 * * * * * * * * 4549 1
+ 138 3453 * 1000 1000 * * 5440 1139 0
+
+Q 2 2206 4146 * 3917 * * * * 4545 3893 * 3868 * 1487 2997 * * * * * 2
+ 0 * * * * * * 6020 0 0
+
+K 3 4688 * * 2251 * * * * 2586 * * 4360 * 2781 1628 5108 4728 * * * 3
+ 0 * * * * * * 6563 0 0
+
+G 4 3633 * * 4741 * 1801 3396 * 3298 * * 2446 * * 3309 4066 4207 * * * 4
+ 0 * * * * * * 7032 0 0
+
+N 5 4012 * * * * 3758 * 4287 * * * 2105 4109 1865 3628 3575 3590 * * * 5
+ 65 5344 5687 0 * * * 7216 1042 0
+
+F 6 * * * * 1004 * * * * 2792 * 3958 4634 * 5079 5519 * 3765 * 2972 6
+ 59 4647 * 0 * 0 * 7549 1188 1042
+
+R 7 4154 * 5832 5114 4096 4719 * 5520 2453 4161 * 5942 * 6150 2074 2387 5451 5506 5884 5656 7
+ 20 6150 * 0 * * * 7860 1006 0
+
+N 8 3510 5166 5179 3182 * 1617 * * 5938 4385 * 3694 4221 4518 3115 5092 5791 5712 * * 8
+ 63 6300 5051 1000 1000 * * 8248 1000 0
+
+Q 9 2966 * 4623 4305 * 3207 6295 * 4444 4377 * 6222 1824 2545 5150 6632 * 5179 * 4932 9
+ 108 4013 6599 1575 590 0 * 8154 1183 1007
+
+R 10 3519 6578 4068 4072 * 3710 6241 4995 2959 5008 4690 4045 4591 4544 2460 4344 5759 * 6209 4161 10
+ 32 5515 * 1095 911 0 * 8347 1158 1005
+
+K 11 4692 * 5092 2823 6235 3103 6805 6980 2992 5843 * 4254 3637 5408 2173 3751 5477 5256 * * 11
+ 55 4743 * 2411 300 * * 8607 1284 0
+
+T 12 3823 6800 4098 4703 6513 4388 * 4834 4168 5158 5150 2710 3161 4638 3660 3165 3889 4928 6196 6853 12
+ 48 5662 6287 722 1345 * * 9191 1118 0
+
+V 13 3438 * 4294 5908 * 3498 5192 3296 4467 2974 6866 4634 4722 4819 3899 4217 3655 3557 * 4553 13
+ 115 4722 4699 208 2894 * 0 8316 1329 1000
+
+K 14 4150 * 6234 5701 4923 3363 5875 3966 2868 3996 6246 4661 4776 4556 2849 3840 3744 4202 7267 5356 14
+ 169 3574 5235 2318 323 280 2503 8126 1744 1633
+
+C 15 6040 405 6011 * 5931 5460 * * * 5809 6666 5648 * * 5331 5284 * 4076 7408 6427 15
+ 0 * * * * 3115 177 8328 0 1439
+
+F 16 4463 6806 * 6875 1509 7030 4133 4716 5557 5234 * 4655 6780 5265 4338 4527 7162 5259 4791 2334 16
+ 18 * 6305 2807 222 * 0 8173 1088 1381
+
+N 17 5963 * 5592 6253 5098 4493 6175 4483 2815 5928 7373 2042 4719 4705 2583 4452 3938 4893 6858 6150 17
+ 36 7461 5726 0 * 1766 502 8549 1042 1514
+
+C 18 6492 413 6006 6564 6669 6149 * * 5771 5523 * 6468 * 6667 5833 6537 5401 4350 5290 * 18
+ 0 * * * * 1399 688 8552 0 1502
+
+G 19 4450 * 5397 7506 5265 1158 7134 * 5629 4930 * 3799 5734 3814 3850 4290 6042 5422 4071 6570 19
+ 152 4177 4481 1914 445 1395 690 8583 1388 1287
+
+K 20 4487 * 4740 2747 * 2875 5839 * 2993 6056 6252 4038 7057 3145 3115 3336 6303 5474 7264 5387 20
+ 49 5732 6132 1000 1000 214 2858 8410 1076 1725
+
+E 21 3917 * 4160 3577 4726 4776 6131 7356 3771 4055 5181 4894 2993 5374 3728 2926 3899 5081 * 4281 21
+ 70 6726 4724 682 1409 0 * 8611 1028 1186
+
+G 22 4730 * 4143 5098 * 776 6208 6960 4932 5769 6897 4897 4513 7383 4892 5010 4680 7531 5726 * 22
+ 27 6881 6656 0 * 349 2220 8320 1028 1433
+
+H 23 5031 7013 3907 6310 6613 4530 573 5016 7922 6063 * 7084 6801 6888 * * 3810 * * 6523 23
+ 52 * 4811 * * 598 1559 8280 0 1249
+
+I 24 4546 * 6164 4415 3464 5885 5257 3431 4775 2870 4181 5535 5730 5708 3709 4970 3725 3317 4548 4187 24
+ 54 5559 5986 1000 1000 2552 270 8197 1158 1405
+
+A 25 2020 7259 * 5124 6649 4089 5038 * 3855 5675 5147 5086 3990 4121 4291 2333 5143 4414 * 5183 25
+ 9 * 7259 1000 1000 1667 546 8389 1102 1476
+
+K 26 2783 7271 4561 3937 6447 5189 7408 6542 2709 5064 * 4174 4539 4351 2068 4208 5654 5443 6278 7284 26
+ 35 6740 6126 0 * 1606 574 8456 1007 1397
+
+N 27 4045 6850 2354 3152 5394 4126 7259 5395 4133 * 7487 2655 7167 3865 4464 3702 4028 6116 * 5924 27
+ 10 7152 * 353 2204 2485 284 8526 1040 1444
+
+C 28 4691 496 6494 6288 5672 4859 * 5142 * 5286 6566 6552 * 7380 5158 4948 * 5236 * 7315 28
+ 14 6729 * 0 * * 0 8218 1000 1353
+
+R 29 4839 7277 6929 4904 5943 4686 * 5970 3466 7410 6799 5858 1446 4935 3215 4238 3285 5003 * 5099 29
+ 78 4912 5671 1993 417 748 1305 8212 1305 1426
+
+A 30 2756 7130 5102 4180 5492 2995 4763 * 3517 4660 6881 4067 5337 3743 4081 3075 4621 4322 * 6241 30
+ 410 2486 3866 3218 164 1604 576 8292 2713 1440
+
+P 31 3764 * 5550 4210 5998 3341 5686 7431 3347 4259 6440 3908 2086 4415 3753 4328 4557 5348 6718 * 31
+ 708 2155 2615 2307 326 932 1071 8461 3124 2327
+
+R 32 3967 * 4597 4930 4964 3578 * * 3125 5693 6469 4156 4204 3985 2041 3241 4456 7262 5681 7141 32
+ 436 2194 4561 2657 249 1161 855 8342 2911 3066
+
+K 33 3834 * 3916 3209 6775 2935 * 6244 2934 5897 5308 4123 4009 5053 4443 2999 3801 5355 * 6315 33
+ 283 2643 5800 2918 205 160 3249 8344 2709 2502
+
+K 34 3830 * 5217 5023 7180 2959 5352 3583 3200 3796 6213 4542 4380 4438 2822 4466 5054 3772 * 7101 34
+ 83 4363 7107 1708 527 718 1350 8410 1423 1313
+
+G 35 4305 6343 6962 5453 5447 2853 5765 3501 3590 3342 7523 4238 5061 4551 3046 4537 3392 3918 * * 35
+ 22 6035 * 2328 320 884 1127 8391 1129 1271
+
+C 36 5835 291 4856 * * 4170 * * * * * * * 6480 6257 5844 * 5893 * 5933 36
+ 15 * 6622 * * 1260 780 8400 0 1084
+
+W 37 5047 5987 * 6015 2233 5049 3553 5833 4975 3942 5861 4024 4565 5311 4134 5027 5460 4975 5610 2417 37
+ 9 * 7346 * * 725 1340 8154 0 1220
+
+K 38 5143 * 6281 4139 5677 4367 6106 3830 2732 3592 5298 3005 5440 5801 2576 4692 4373 5112 7337 4830 38
+ 46 5780 6217 2322 322 1535 611 8161 1076 1104
+
+C 39 6652 362 * * * 3469 * * * * * * * * 6349 4429 * 5803 6023 5062 39
+ 11 6995 * 1000 1000 1127 883 8100 1010 1180
+
+G 40 4240 * 6530 5911 6926 1041 4554 6218 3434 6324 * 3388 7151 4809 4493 4997 5901 5119 * 7635 40
+ 23 6679 7394 2807 222 * 0 8340 1017 1064
+
+K 41 4718 * 3857 3150 7496 3454 4989 * 2312 5364 * 4433 6023 3349 3410 3244 4992 4816 * * 41
+ 0 * * * * * 0 8100 0 1180
+
+E 42 3885 * 4802 3280 5973 3543 4628 4831 3382 4364 4900 6272 3541 4890 3639 4394 3703 3551 * 5984 42
+ 0 * * * * 1127 883 8100 0 1180
+
+G 43 5859 * 4523 4057 6014 559 6218 * 7485 * * 3868 5901 * 5693 5183 5878 * * 5907 43
+ 37 5589 7752 2000 415 * 0 8340 1116 1064
+
+H 44 6034 * 7114 5732 5627 5563 365 6597 * 6998 * 5500 * * 6305 6337 4360 5950 * 6575 44
+ 15 * 6549 * * * 0 8000 0 1130
+
+Q 45 7558 * 7215 6524 3178 5708 7512 3236 3652 3385 3401 4803 5237 6550 3357 5409 3985 3625 4149 3811 45
+ 12 * 6891 * * 622 1514 7940 0 1239
+
+M 46 1818 * 5781 5204 5852 4847 7039 5081 3752 3335 3979 4936 5788 7214 4334 2977 5784 4018 7046 5404 46
+ 0 * * * * * 0 7952 0 1097
+
+K 47 3912 7035 4660 4874 7190 4688 7054 5975 2688 5566 5577 5000 5582 4209 1902 3082 4509 5026 7043 6387 47
+ 39 5234 * 459 1876 1482 639 7936 1127 1097
+
+D 48 3734 4863 2315 3173 5725 5572 4797 6715 5370 5889 5590 3351 * 3343 4326 3308 5196 4352 * 7029 48
+ 38 5511 7937 3217 164 * 0 7926 1109 1036
+
+C 49 4403 358 5938 4405 6623 6466 * * 6886 * * 4910 * * * 6510 6590 * 5879 7060 49
+ 22 6032 * 1194 829 0 * 8016 1139 1100
+
+T 50 6339 * 6522 * 6630 5187 5080 6129 2862 4956 7290 5426 1394 5183 3198 4119 3817 5389 * 5231 50
+ 46 5235 7754 1983 421 * * 7902 1118 0
+
+E 51 4566 6237 4940 3225 4835 3873 5947 6244 3585 4585 7308 2805 5981 3386 4977 2999 3102 6258 * * 51
+ 24 5936 * 1585 585 0 * 7961 1034 1075
+
+R 52 4468 6462 4265 5328 6513 4340 * 5772 2440 5909 6780 3729 3290 4258 1990 3894 5113 * * * 52
+ 0 * * * * * * 7802 0 0
+
+Q 53 3952 * 4222 4189 5450 4294 * * 3271 6025 * 4204 1985 2356 3125 5847 * * * * 53
+ 0 * * * * * * 6895 0 0
+
+A 54 1905 * * 3413 * 3895 * * 3960 * * 2786 2088 * * 3889 * 4062 * * 54
+ 0 * * * * * * 4621 0 0
+
+N 55 * * * * * * * * * * * 0 * * * * * * * * 55
+ 0 * * 0 * * * 2363 0 0
+
+//
+�HHsearch 1.5
+NAME 0e5c9e30af579568c535c51a9a27f145
+FAM
+FILE 0e5c9e30af579568c535c51a9a27f145
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:29:09 2013
+LENG 106 match states, 106 columns in multiple alignment
+FILT 107 out of 268 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEE
+EEECCC
+>ss_conf PSIPRED confidence values
+9347888885158898056899999868857775789848889999985799778453269827878886348998724211211589982199775880
+142088
+>Consensus
+xxxxxxFxxqHidxxxxxyCnxxMxxrxxxCKxxNTFIhxxxxxVxavCxxxxxcxnxxSxxxxxxtxCxlxxpxCxYxxxxxxxxixVaCexxxPVHxd
+xxxxxx
+>0e5c9e30af579568c535c51a9a27f145
+MQNWETFQKKHLTDTRDVKCDAEMKKALFDCKQKNTFIYARPGRVQALCKNIIVSKNVLSTDEFYLSDCNRIKLPCHYKLKKSSNTICITCENKLPVHFV
+AVEECP
+>gi|164422319|gb|ABY55257.1| RNase 2 [Oncorhynchus masou formosanus]
+SHRYTHFLRQHVKgDMTIQKCQGVMGYLELtesdsaNCKVKNTFIKANSNQVRAICTGGGTPMGnslFESNNRFPVVICKHkckkktlcqhTHPRCEYEG
+SSSTRKVVIACEREWPVHYGDD----
+>gi|153791763|ref|NP_001093574.1| ribonuclease like 4 [Danio rerio]gi|146351600|gb|ABQ23785.1| RNase 3 [Danio rerio]
+SQSYNDFKRKHLApaGMKEDDCTTLIVTeRKIkeknQCKKINTFILETEDKIKGVCNTPaTDGKN-HKGTGFTVINCTKieNIIDCKYNGVKRTTDIILT
+CENRLPVHYGRS----
+>gi|18376502|emb|CAC86435.1| pancreatic ribonuclease alpha [Berylmys bowersi]
+ESSAEKFKRQHMDpdsipNSSPTYCNQMMKRREMttgSCKPVNTFVHEPLDDVKAICSQGqMTCKNgksncHKSSSTLHITECRLkgssKYPNCDYTTTD
+SQKHIIIACDGNpyVPVHFDASE---
+>gi|1330317|emb|CAA39461.1| eosinophil cationic-related protein [Homo sapiens]
+-----LRGLTSI-SRNQLQCTNAMRVINNyqrRWKNRNTFLLATFANVVNVCGNPtITCPhnrtlnNcHHSGVQVPLMYCNLttpspQnISNCRYAQTPA
+NMFYIVACDNRdqrrdppqypvVPVHLHTI----
+>gi|296214379|ref|XP_002753775.1| PREDICTED: ribonuclease-like protein 12-like [Callithrix jacchus]
+-------EHLHVDypqeGVPVpaRYCNHMIIQRIIrepdhTCKKEHVFIHERPRKINGLCTSpkKVACQNlsstfcFQSETKFKMTVCQLiegtRYPACR
+YRYFPVEGFVLITCDELGPDSFQGY----
+>gi|300872929|gb|ADK39277.1| RNase-Ginf2 [Gerrhonotus infernalis]
+-DTFESFKELHVDypktgaPNDDEYCKKVMGGRGRTKLKANTYIHAPDSELLAACNRKKYKLNheYGRTSRLPTTLCT--YGDRVFLGSSLPGTNKVLCV
+NWKPVAFRG-----
+>gi|292622086|ref|XP_002664865.1| PREDICTED: hypothetical protein LOC100332602 [Danio rerio]
+----NVFLKRHIPdGVPktwDQNAWE-AFLRKIkTCgRPTQSFFRATEkQRVENVCSKDGGKtlsGNlCISKEKFSFVTVRIdTEGACGIRSMrNETKHI
+ILACEDIgdvcQPVHFEGN----
+>gi|281345895|gb|EFB21479.1| hypothetical protein PANDA_019758 [Ailuropoda melanoleuca]
+--------------TDPEYCTAEMKMKNVhnkfRCVREHFFLQVAYEELQKLCKNIfVPCKNgvkkcHRSRQLIEGVYCNLtrgvRMSDCEYESSYRQGY
+VLITCRWQndiqeiIPAYV-------
+>gi|149568755|ref|XP_001515593.1| PREDICTED: similar to ribonuclease 13 [Ornithorhynchus anatinus]
+-SKARTFRLMHIDfprsefaPGFRGYCNGLMAYVRAqreswQCPEKHFVLHAPAATVRAICAHTdSFCEdfGefcTRSHKPLPVTTCARtpglPPSVCRY
+NATVhvQSHRVWLLCSS-------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 4292 3672 3268 1542 * * * * 3637 * 4025 2894 * * * 2767 * * * * 1
+ 0 * * 4494 66 * * 4474 1139 0
+
+Q 2 3959 * 4179 4581 * 6015 3714 * 5821 * * * 3347 2013 3808 2719 3005 * * 4814 2
+ 0 * * 1000 1000 * * 5214 1035 0
+
+N 3 3734 * 2739 5856 * 5649 * * 4907 * 4371 3528 4819 5088 1807 3108 3513 * 6031 * 3
+ 29 * 5654 * * * * 5262 0 0
+
+W 4 2265 * * 6825 3448 5795 6641 4793 * * * * 7144 * * 3209 6890 4923 2788 1617 4
+ 0 * * * * * 0 5478 0 1035
+
+E 5 4138 * 6665 2406 * * 6004 4723 3747 5201 5444 3466 * 1612 4236 4284 5626 5369 * * 5
+ 24 * 5913 * * * 0 5572 0 1035
+
+T 6 6137 * 4021 * * 6710 3701 * 2321 5769 6533 5081 5869 6587 3735 3861 2740 4543 2466 4879 6
+ 0 * * 0 * 908 1099 5626 1050 1150
+
+F 7 * * * * 61 * * * * 5449 * * * * 5781 * * * * * 7
+ 0 * * * * * 0 5641 0 1035
+
+Q 8 5227 * 6934 2685 * 5787 * 5531 3411 1615 6199 6703 * 2459 3835 5441 6830 6126 5698 6822 8
+ 23 * 5960 * * * 0 5661 0 1035
+
+K 9 6366 * * 4010 * * 5879 2566 2734 4074 * 4168 * 4263 1730 * 3184 * 6505 * 9
+ 0 * * 1738 514 0 * 5664 1150 1150
+
+K 10 * * * 6833 5719 * 4273 6164 2472 3925 5633 * * 919 3593 * 5129 * * * 10
+ 42 5982 6292 0 * * * 5667 1050 0
+
+H 11 * * 6665 * * * 41 * * * * * * * * 5764 * * * * 11
+ 17 6407 * 0 * 908 1099 5664 1003 1150
+
+L 12 * * * * * * * 1549 * 3354 3846 * * * 5119 * 5307 1474 * 3698 12
+ 316 6700 2416 2205 353 0 * 5661 1095 1035
+
+T 13 5626 * 731 6520 * 6415 6654 * 5374 * * 6253 4330 5895 6590 6376 3515 4264 * 3664 13
+ 2267 336 * 2077 390 446 1910 5539 4174 2015
+
+D 14 5187 * 3168 4727 6407 2298 * 7351 6066 5107 * 2310 3987 3949 4816 2878 6798 6057 4906 * 14
+ 44 6590 5650 2013 411 1749 510 5911 1071 1608
+
+T 15 4044 * 5617 6783 6507 2958 7042 5412 5688 5109 3072 2959 4482 5758 4043 2960 3708 3450 6696 6245 15
+ 24 * 5933 1351 718 563 1629 6121 1289 1588
+
+R 16 3660 * 2189 * 5846 3508 4855 6615 5514 5844 6631 3238 3624 6122 3757 3386 3167 6594 6734 * 16
+ 47 4948 * 1585 585 973 1028 6164 1122 1280
+
+D 17 5069 7052 2232 4451 * 5276 4234 5507 4844 6736 * 3119 3140 6766 4213 3507 4223 4737 * 3502 17
+ 39 5215 * 1000 1000 755 1295 6157 1132 1105
+
+V 18 4891 * 3672 4539 5464 5015 5011 3488 4684 3884 * 4838 4128 2964 2546 6352 3932 3642 * 6057 18
+ 0 * * * * * 0 6467 0 1003
+
+K 19 6808 * 4290 5132 6355 * * 7305 3833 6481 * 3198 5978 3581 3572 6571 6656 * * 1004 19
+ 0 * * * * 0 * 6467 0 1003
+
+C 20 4895 66 * * * * * * * 6473 * * * * * * * * * * 20
+ 0 * * * * * * 6478 0 0
+
+D 21 6818 * 2533 5219 6977 6592 * * 4257 * * 941 * 6672 5116 5280 3429 * 4895 6771 21
+ 16 * 6473 * * * * 6478 0 0
+
+A 22 3873 * 3705 3630 * 5164 4610 4830 4147 3494 5130 3551 6956 3807 4324 3693 2979 3794 * 7484 22
+ 50 * 4864 * * * 0 6201 0 1042
+
+E 23 2518 6737 * 2675 * * * 3455 5741 3511 1585 * * 6794 * 6784 4520 3900 * * 23
+ 0 * * * * 0 * 6101 0 1229
+
+M 24 4895 * * * * * * 3312 * 3037 514 * * * 6494 * 6838 5391 * * 24
+ 12 6938 * 1000 1000 * * 6478 1000 0
+
+K 25 3617 * 6878 6059 4636 4014 6883 5699 2439 4926 5634 5215 5671 3389 1967 3852 * 4967 * 5118 25
+ 0 * * * * * * 6470 0 0
+
+K 26 3725 5475 5584 4875 * 3942 5568 4782 3447 3968 5006 4238 6901 4460 1927 5880 4478 4032 * 4470 26
+ 32 5495 * 863 1151 * * 6470 1081 0
+
+A 27 6586 6908 * * * * * 3570 2841 5157 * 4825 5165 6105 1021 5774 6409 2955 * * 27
+ 18 * 6307 * * * 0 6469 0 1000
+
+L 28 * 5112 6574 5302 * 2826 6110 5074 2963 3431 * 1580 * 3923 4013 6055 * 4727 6149 * 28
+ 17 6399 * 1310 745 605 1546 6467 1117 1110
+
+F 29 5768 * * * 3511 5452 7202 1931 3784 2690 2712 3706 * 6975 4652 7116 * 3947 * 5292 29
+ 3034 236 5106 1814 483 0 * 6450 5301 1062
+
+D 30 * 6568 4865 6583 5808 * 3692 7078 3885 7071 * 3676 3773 3332 2068 4113 2613 5509 6077 5659 30
+ 137 3462 * 1450 657 * 0 6370 1537 1112
+
+C 31 * 106 * * * * * * 4980 * * * * * * 6077 * * 6719 6082 31
+ 71 4380 * 815 1213 0 * 6370 1396 1112
+
+K 32 * * 6105 6581 * * * 4693 525 4189 6847 * 5096 6119 4321 * 6505 4583 * 4995 32
+ 16 6475 * 2585 263 * * 6470 1042 0
+
+Q 33 5338 * 3134 3198 5789 5633 7003 * 2975 6161 6105 4096 2052 4663 3517 5104 4389 5152 * 5690 33
+ 0 * * * * * * 6470 0 0
+
+K 34 4830 * * 3078 4321 6790 6621 3562 3149 3560 7363 6110 * 3162 3798 5827 3674 2591 5118 * 34
+ 0 * * * * * * 6470 0 0
+
+N 35 * * * 6119 * * 3252 * 6110 * * 445 * 4404 5876 * 5118 * * 4693 35
+ 0 * * * * * * 6470 0 0
+
+T 36 * * * * 4104 * * 5657 6119 * * 6371 * * * 3847 424 6614 * 3830 36
+ 17 * 6422 * * * * 6470 0 0
+
+F 37 * * 6526 * 202 * * 4047 * * * * * * * * * 5846 * 4570 37
+ 22 * 6025 * * * 0 6193 0 1035
+
+I 38 6074 * * * 4977 7087 * 829 * 1952 * * * * * * * 3003 * * 38
+ 0 * * * * * 0 6163 0 1138
+
+Y 39 6837 * * * 6411 4927 688 5435 5642 3641 * 6864 * 4306 4361 * * 4637 * 4199 39
+ 0 * * * * * 0 6163 0 1138
+
+A 40 1959 * 3826 1936 * 4288 * 6081 6852 * 4552 6741 * 6997 * 3308 2724 5367 * * 40
+ 0 * * * * * 0 6163 0 1138
+
+R 41 6735 * 3631 5017 * * * 6504 * 5570 6173 3055 2886 6325 4093 1960 2152 5351 * * 41
+ 21 6081 * 1000 1000 * 0 6163 1059 1138
+
+P 42 3738 * 4221 3447 2528 5913 7128 4335 3746 2891 * 6574 2647 7047 * 4971 6620 * * 3265 42
+ 93 4001 * 264 2579 * 0 6163 1340 1138
+
+G 43 2457 * 3420 2903 * 3686 6880 6917 4131 * * 4092 3977 3936 3384 4027 4532 6368 4969 7084 43
+ 0 * * * * * 0 6163 0 1138
+
+R 44 4384 * 2517 3157 7438 5318 6571 7153 3722 6944 * 2467 4683 3763 4197 3616 3272 * * * 44
+ 21 6081 * 2389 306 1012 988 6163 1160 1138
+
+V 45 6881 * * * * * * 2057 * 2639 * * * * 6466 * 6083 824 * * 45
+ 0 * * * * * 0 6442 0 1037
+
+Q 46 3546 * 6104 4254 * * 6424 6175 2051 4074 6588 4343 6019 2810 3076 5846 4534 3006 * * 46
+ 0 * * * * * 0 6442 0 1037
+
+A 47 1279 * 3722 5583 * 3645 5890 * 3847 5594 * 3334 5077 5952 5918 3690 4321 6043 * * 47
+ 0 * * * * * 0 6442 0 1037
+
+L 48 4062 * * 7129 6155 * * 1725 * 3244 5583 * * * * 6019 3730 1325 * * 48
+ 0 * * * * * 0 6442 0 1037
+
+C 49 * 0 * * * * * * * * * * * * * * * * * * 49
+ 29 6840 6484 1585 585 * 0 6438 1000 1037
+
+K 50 4595 * 4661 4669 5474 2301 6985 5662 4250 5948 * 3689 * 5857 3096 2871 2916 * 6466 3927 50
+ 165 3726 4950 161 3245 852 1165 6418 1463 1164
+
+N 51 6104 * 4893 4481 * 2167 4616 * 3750 6168 6675 2620 4433 3899 3781 4069 3503 5056 5719 * 51
+ 61 6532 5032 1000 1000 2295 329 6393 1015 1227
+
+I 52 3426 * 3746 4282 * 3410 6964 3992 3237 5398 * 4839 2215 4910 3692 5631 3696 5160 * * 52
+ 1397 718 6352 364 2166 1096 910 6383 4113 1369
+
+I 53 4880 * 5571 * * 2243 6780 2512 4069 * 4802 5768 * * 4735 4602 3564 1877 * * 53
+ 98 6071 4308 0 * 1048 953 6045 1031 1325
+
+V 54 3147 6181 5321 4779 5689 3525 * 4493 3567 5255 * 3908 3334 4008 5053 5905 2353 4621 * 4659 54
+ 18 * 6345 * * * 0 6048 0 1486
+
+S 55 4674 914 * 6678 * 5308 6942 * 3338 6647 * * 3042 5459 3967 4095 6448 * * * 55
+ 258 2739 6148 1237 797 1780 496 6031 1963 1550
+
+K 56 6920 * 4029 5094 6520 4838 7045 * 1424 4056 6562 4486 4112 4133 3647 5345 4273 5033 * 4102 56
+ 600 1676 5209 2021 408 1477 642 6061 2786 1461
+
+N 57 * * 4816 * 6472 2877 * * 5207 6451 * 637 * 6444 5946 4924 4608 6081 * 5706 57
+ 3175 193 6139 1413 680 208 2900 6070 5162 1446
+
+V 58 * 4437 * * 3969 * 1309 5770 6586 6828 * 4735 * * 2925 * 4891 3112 6533 3066 58
+ 16 * 6533 * * 0 * 6125 0 1090
+
+L 59 5925 6041 4112 5021 * 5163 4276 3448 3584 3199 5545 4365 * 2965 2365 5012 3767 * * 5664 59
+ 54 5526 6025 0 * * 0 6147 1110 1000
+
+S 60 * * * * * 5253 5984 * 6109 * * 5108 * * 5135 243 4599 * * * 60
+ 20 * 6172 * * 913 1092 6078 0 1263
+
+T 61 5383 5995 6146 4323 * 3976 5170 6957 3164 5092 4891 2969 3429 5764 3488 2437 3190 * * * 61
+ 0 * * * * 629 1501 6126 0 1173
+
+D 62 4578 * 4796 3399 7052 4237 5135 5248 3951 6399 5760 3860 * 3401 3854 2106 3593 4307 * 5733 62
+ 0 * * * * 0 * 6167 0 1019
+
+E 63 5152 * 6115 4171 * 6251 6484 4836 2950 3697 * * 1968 3292 3130 3937 4221 4711 * 7131 63
+ 13 6849 * 0 * * * 6155 1000 0
+
+F 64 * * * * 1213 * * 3017 * 3008 3572 * * * * * 5791 2194 * * 64
+ 0 * * * * * * 6155 0 0
+
+Y 65 5850 * 3323 4053 7060 6128 4993 * 3012 * * 4208 2045 3901 3567 2769 5413 * * 5195 65
+ 0 * * * * * * 6155 0 0
+
+L 66 6445 * * * 4866 3675 * 2713 6878 1692 3672 * * 6176 * * 4792 1890 * 7109 66
+ 0 * * * * * * 6155 0 0
+
+S 67 4162 * 5831 * 6651 * * 3809 * 6433 6682 * * * * 4733 701 2547 * * 67
+ 18 * 6302 * * * * 6155 0 0
+
+D 68 6500 * 2220 4576 4631 * 4347 3464 5720 4269 6838 5188 * 4503 4882 5133 2343 4552 * 3335 68
+ 0 * * * * * 0 6119 0 1050
+
+C 69 * 50 * * * * * * * * * * * * * * * 4875 * * 69
+ 57 5133 6609 1000 1000 0 * 6119 1226 1050
+
+N 70 5745 6927 5366 4914 6104 * 6126 5250 2709 4907 * 2223 * 4223 2353 5150 3090 4181 * 6618 70
+ 118 * 3674 * * * 0 6149 0 1016
+
+R 71 6016 * * 4209 6622 * 3223 4159 5017 842 6936 6761 * 5179 4069 * 7424 4110 * * 71
+ 3689 116 * 1978 423 2381 308 5936 5267 1524
+
+I 72 4714 * * 6360 * * * 6357 2612 6526 6177 4190 3812 3408 2346 3843 2417 4298 6795 5995 72
+ 220 2825 * 0 * 132 3516 6140 1701 1840
+
+K 73 6216 7056 6526 4859 5451 5924 3522 3757 4578 6350 4212 4168 2953 * 3858 4255 5176 5314 7117 1948 73
+ 32 5493 * 2000 415 * 0 6149 1078 1016
+
+L 74 * * * * * 3843 * 6247 4541 6604 * 5113 774 * 4245 3318 3902 5051 * * 74
+ 14 6718 * 1427 671 0 * 6149 1080 1016
+
+P 75 4122 * 2558 * * 5639 3994 * 6383 7415 * 1791 2377 4078 5652 5212 4513 5762 * 5481 75
+ 0 * * * * * * 6155 0 0
+
+C 76 * 84 * * * * * * * * * * * * 5171 * * * * 5123 76
+ 17 * 6450 * * * * 6155 0 0
+
+H 77 3362 * 4307 3780 * 4878 4539 4566 2755 * 5046 3872 4578 4193 2285 5124 5352 4527 * 6040 77
+ 0 * * * * * 0 6118 0 1035
+
+Y 78 * * * * 4156 * * 4878 * * * * * * * * * * * 136 78
+ 15 6568 * 1000 1000 * 0 6118 1003 1035
+
+K 79 5232 * 4641 3819 * 6995 3757 * 2168 4732 * 3915 * 3779 2140 3616 4627 4950 * * 79
+ 0 * * 1585 585 0 * 6118 1035 1035
+
+L 80 3467 * 4770 4627 * 2127 6069 5807 6115 4351 6956 7014 * 3935 7139 2716 2036 6514 * 6356 80
+ 0 * * * * * * 6155 0 0
+
+K 81 6885 * 4616 4682 3185 7081 6594 4089 3240 7036 4552 4487 * 5697 4101 3271 1800 4437 * 6624 81
+ 67 4471 * 0 * * * 6155 1189 0
+
+K 82 4056 * 5532 5240 * 5954 5933 5128 3291 5088 6581 3610 3292 3356 3726 3092 3858 3844 * 3725 82
+ 27 5747 * 707 1368 0 * 6141 1118 1002
+
+S 83 3532 * 4177 3907 4505 4553 * 7149 3121 3019 4922 7131 5807 3361 3755 2596 4248 6356 * * 83
+ 0 * * * * * * 6155 0 0
+
+S 84 * * 5909 3234 4592 * 5709 4755 6532 * 4830 3175 4243 3608 4807 3466 1701 5596 * 4904 84
+ 26 5807 * 0 * * * 6155 1082 0
+
+N 85 5979 * 6411 7026 * 2259 4329 * 1752 * 4516 3758 * 5621 2128 5086 6251 * * * 85
+ 10 * 7123 * * * * 6155 0 0
+
+T 86 7000 6529 5134 * 2569 6410 3291 4329 4048 5031 * 6064 6115 5296 3021 4188 4727 4191 * 2291 86
+ 0 * * * * * 0 6119 0 1004
+
+I 87 6333 * * * 3736 * * 1036 * * * 5180 4882 * * * * 2341 * 2590 87
+ 0 * * * * * 0 6119 0 1004
+
+C 88 7063 3080 7022 5133 5692 * * 2128 4721 3625 * 6549 * * 3197 6147 3628 2071 5776 * 88
+ 0 * * * * * 0 6119 0 1004
+
+I 89 * * * * * * * 1625 * 3222 5619 * * * * * * 867 * * 89
+ 0 * * * * * 0 6114 0 1004
+
+T 90 1079 * * 6553 * 4171 * * 4360 3962 * * * 5128 5367 4175 2209 5437 * * 90
+ 0 * * * * * 0 6114 0 1004
+
+C 91 * 0 * * * * * * * * * * * * * * * * * * 91
+ 0 * * * * * 0 6114 0 1004
+
+E 92 5601 * 2519 1399 * 7017 5795 6458 4533 6483 * 3258 * 4183 3821 5128 6134 4300 6622 * 92
+ 0 * * * * * 0 6114 0 1004
+
+N 93 * * 2507 5007 * 2165 5205 * 5333 * * 2110 3075 5267 5097 5757 * * 3411 * 93
+ 0 * * * * * 0 6114 0 1004
+
+K 94 6755 * 3701 4181 * 2415 * 4865 3582 4811 5017 3151 4573 3559 2694 5307 5161 * 4654 * 94
+ 941 1061 * 2764 230 * 0 6062 3537 1004
+
+L 95 4822 * * * 4737 4984 * 3630 4387 2402 * * 6247 4063 4978 * * 1638 3470 4022 95
+ 0 * * * * * 0 5763 0 1004
+
+P 96 * * * * * * * * * * * * 19 * * 6247 * * * * 96
+ 0 * * * * 0 * 5763 0 1004
+
+V 97 4323 5865 4554 * * * 6323 4594 * * * 5057 * * * * 5367 355 * * 97
+ 0 * * * * * * 5765 0 0
+
+H 98 5101 * * 6488 * * 313 * 5862 6402 * * 6255 * * 6138 4587 * * 4137 98
+ 12 * 6934 * * * * 5765 0 0
+
+F 99 * * * * 1354 * * 3964 * 1630 * * * * * * * 3784 * 2747 99
+ 0 * * 0 * 0 * 5772 1004 1004
+
+V 100 3841 * 873 3324 * 5099 4634 * 6669 4845 * * * 3819 4993 * * 3880 * * 100
+ 15 6593 * 1585 585 * * 5622 1004 0
+
+A 101 4084 * 6205 2990 7084 1474 * * 2882 4967 * * 5519 4723 3131 4195 5108 * 6769 * 101
+ 0 * * * * * * 5565 0 0
+
+V 102 * * 3608 5094 * 4203 * 2853 6112 * * 4062 * * * 2380 2296 2777 * 3643 102
+ 0 * * * * * * 5237 0 0
+
+E 103 3048 * * 3627 * 1421 * * 3419 * * * * * * * * 1595 * * 103
+ 0 * * 1000 1000 * * 3076 1000 0
+
+E 104 * * * 2425 * * * * 1788 * * * * * * 932 * * * * 104
+ 0 * * * * * * 1998 0 0
+
+C 105 * 0 * * * * * * * * * * * * * * * * * * 105
+ 0 * * * * * * 1998 0 0
+
+P 106 * * * * * * * * * * * * 0 * * * * * * * 106
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 0f066235c0e8814be13f086538bfd823
+FAM
+FILE 0f066235c0e8814be13f086538bfd823
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:48:16 2013
+LENG 112 match states, 112 columns in multiple alignment
+FILT 47 out of 49 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
+HHHHHHHHHCCC
+>ss_conf PSIPRED confidence values
+9500000244433566788778898378899999998588875358987443476699999999999853577878886229999999999999999999
+999999886339
+>Consensus
+GAvvGxxxGyxlGxxxxrxxxxFxnpxExrYYxenxxrypdxVyYxxxxxxvtxexFVxdCvNxTxxxxxxxxsxxxxnxsexexrvxxrvixemCvxqY
+xxxxxxxxxxxx
+>0f066235c0e8814be13f086538bfd823
+GSVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSNQNNFVHDCVNITVKEHTVTTTTKGENFTETDIKMMERVVEQMCITQY
+QRESQAYYQRGA
+>gi|45382625|ref|NP_990796.1| major prion protein homolog [Gallus gallus]gi|212615|gb|AAA49041.1| prion-like protein [Gallus gallus]
+GAVVGGLGGYAMGRVMSGMNYHFDRPDEYRWWSENSARYPNRVYYRDYSSPVPQDVFVADCFNITVTEYSIGPA-AKKNTSEavaaanqteveMENKVVT
+KVIREMCVQQYREYRL-------
+>gi|327284127|ref|XP_003226790.1| PREDICTED: major prion protein homolog [Anolis carolinensis]
+GAAVGALGGYLLGRSMSNMQFGFPNQYDERWWYQNRDRYSDQVYHPPYNPSVSREVFVRDCVNVTVTEY-IQPT-GNQTADEVEMRVVPLVVREMCTEQY
+---RL-------
+>gi|55667998|gb|AAV54126.1| prion protein [Xenopus laevis]
+GAAAGAIGGYMLGNAVGRMSYQFNNPMESRYYNDYYNQMPNRV-YRPMyrgEEYVSEDRFVRDCYNMSVTEYIIKPAegKNNSELNQLDTTVKSQIIREM
+CITEYRRGS--------
+>gi|82780737|gb|ABB90540.1| stPrP1 [Sparus aurata]
+GAVAGMAVGYGLGRFP-RPHFNFRNPEEEHYYNNYMYRrYGTqstdekdygrdYV-YKLPPRAETYDKFMSRCMNRTDLikDQGSSSTTPnnqgggDEDd
+dtVSIEEIgypSLIEQLKARRCVGLYMEYSEKFLE---
+>gi|47223680|emb|CAF99289.1| unnamed protein product [Tetraodon nigroviridis]
+GAVAGMAVGYGLGRFP-RPHFGFRSPSEEYYYNNYMYRQYglkstdERDYGRDYvyklpPRAESYEQFMDRCMNRTNLLKDQGSSKaeDNDTVS-IEEIG
+YPALIEQMksrrCLEEYMAKSEK------
+>gi|123303107|tpe|CAJ75791.1| TPA: doppel protein Dpl [Echinops telfairi]
+-------------------DVDLGAD-GNRYYEAHYWQFPDGIHYDGCsDANVTREMLVTRCINATQAANQAEFSAppRDQQDSRLHQRVLWRLIRELCS
+AKRCD----------
+>gi|123303103|tpe|CAJ75789.1| TPA: doppel protein Dpl [Monodelphis domestica]
+-------------------VIDFGEE-GNSYYATHYSLFPDEIHYAGCaESNVTKEVFISNCVNATRVINKLEPL-EEQNISDIYSRILEQLIKELCALN
+YCE----------
+>gi|239503711|ref|ZP_04663021.1| putative surface antigen [Acinetobacter baumannii AB900]
+GAVVGGIIGGVVGAIAGNDIAQTNNqkddsnywQEEDNYWRENYKKMP---YYTE-DKNLEYDRDYRAAYRLGY-ENRVDNN-AEINFSEVESKLKTK--
+--------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 0 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 3053 0 0
+
+S 2 80 * * * * * * * * * * * * * * 4206 * * * * 2
+ 0 * * * * * * 3113 0 0
+
+V 3 2723 * * * * * * * * 3438 * * * * * * * 403 * * 3
+ 0 * * * * * * 3113 0 0
+
+V 4 1284 * * * * * * * * * * * * * * * * 763 * * 4
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+A 106 1500 * * * * * * * 2757 * * * * 1919 2738 4913 4292 * * * 106
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+
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+ 0 * * 0 * 0 * 2095 1000 1037
+
+Y 108 * * * * * 4128 * * * 1468 3556 * * 3757 * * * * * 1243 108
+ 0 * * * * * * 2102 0 0
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+Q 109 * * 4662 1698 * * 4128 * * 4595 * 4429 * 1341 4807 4755 * * * 4655 109
+ 109 3776 * 0 * * * 2102 1000 0
+
+R 110 3590 * * * * 3510 3542 * * * * * * 3439 896 * * * 3136 * 110
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+
+G 111 3719 * * * * 769 * * 3282 3708 * * * * 2665 * * * * * 111
+ 130 3535 * 0 * * * 1345 1000 0
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+A 112 914 * 3439 3590 * * * * * * * * * * 3510 3436 3136 * * * 112
+ 0 * * 0 * * * 1328 0 0
+
+//
+�HHsearch 1.5
+NAME 0f0e0cc97063da4305095efeb6623b6b
+FAM
+FILE 0f0e0cc97063da4305095efeb6623b6b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:55:11 2013
+LENG 98 match states, 98 columns in multiple alignment
+FILT 154 out of 1042 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEEECCCCCEEECCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEC
+>ss_conf PSIPRED confidence values
+94999998269861582787998799999999899983379993886655544552246358679987999948998899998987646888999989
+>Consensus
+xxxxvxxxxxxxxxxfxPxxixvxxGxxvxxxnxxxxxHxvxxxxxxxxxxxxxxxxxxxxxxxpgxxxxxxfxxxGxyxxxCxxHxxxgMxgxIxVx
+>0f0e0cc97063da4305095efeb6623b6b
+ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVE
+>gi|319783957|ref|YP_004143433.1| hypothetical protein Mesci_4273 [Mesorhizobium ciceri biovar biserrulae WSM1271]gi|317169845|gb|ADV13383.1| hypothetical protein Mesci_4273 [Mesorhizobium ciceri biovar biserrulae WSM1271]
+--PELIIGSADSTYAVNQKDFELIAGQGYRWKitSKGGFEYkfvtdlfrNVWMDQIVINdLEVHmdG--GPAWLEFDDAGTIQVQFhtVRPGEYTWSVPD
+LADKGLKGKITIK
+>gi|342797151|gb|EGU32807.1| hypothetical protein VIS19158_17171 [Vibrio scophthalmi LMG 19158]
+-VIHVIL-SDDKPIQFKKD-VNIEENDVVQFVvmNTGTKSHEFAIGSKDELSrhnkmmTQMAGMEHdtsSSIIIAPKKARQFtwHFHGDKHVEIACNikG
+HQQHSKSLMIN--
+>gi|225558376|gb|EEH06660.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]gi|325094158|gb|EGC47468.1| extracellular serine-rich protein [Ajellomyces capsulatus H88]
+-TIDVNVGD-K-GLNFNPDIIKAKPGDDIVFHFF-PKNHDVTEgkfDAPCAP--SDGGFYSGLINADGSqpdATFTVRINNTNPIWLYCStpRHCQGGMS
+AVI---
+>gi|146343114|ref|YP_001208162.1| hypothetical protein BRADO6311 [Bradyrhizobium sp. ORS278]gi|146195920|emb|CAL79947.1| Conserved hypothetical protein [Bradyrhizobium sp. ORS278]
+-TIEISV-KD---NKFQPAELKVPADTPIVFKikNLDAAPIEFESDPL----------Q-FETIVKPNMEGVVKVkaQKPGRYEFFDDLHQN-N-KGTLV
+VE
+>gi|261857226|emb|CBE70465.1| nitrous oxide reductase [uncultured bacterium]
+-------------PHYSLDKFEVNEGDEVTVFltNTDdieNALrrrHGDRPAGDSF-----------GHLQGRSagrALVVLPVvlPRPA----------
+-----------
+>gi|152992359|ref|YP_001358080.1| multicopper oxidase [Sulfurovum sp. NBC37-1]gi|151424220|dbj|BAF71723.1| multicopper oxidase [Sulfurovum sp. NBC37-1]
+-------------KAMDMKRIDevVPLGDTEIWEvnNMMGMDHNFHIHathfrvierNDSAANVLEneKGY-KDVVYLKGNETVKLlvKMTDYTdatvPY
+MYHCHflEHENNAMMGQFTVV
+>gi|82703780|ref|YP_413346.1| cytochrome c oxidase subunit II [Nitrosospira multiformis ATCC 25196]gi|82411845|gb|ABB75954.1| Cytochrome c oxidase, subunit II [Nitrosospira multiformis ATCC 25196]
+-----------HMWYWEMDRDQVEPNQPVDIRVtSADVNHGFGIYDPDLR-----LI--AQAQAMPGYTNVIhiTFPKEGTYRVLCMeycgvAHH--NMM
+TEIKVG
+>gi|87306766|ref|ZP_01088913.1| hypothetical protein DSM3645_10542 [Blastopirellula marina DSM 3645]gi|87290945|gb|EAQ82832.1| hypothetical protein DSM3645_10542 [Blastopirellula marina DSM 3645]
+------------DYLFHPYLTFIRTSQKAKFNNLDPVGHNIKISGFA-----NSP---GPGIVPKGGQWVQSFVQeeRIPYPVHSTIYP--WMEADLLI-
+>gi|242096748|ref|XP_002438864.1| hypothetical protein SORBIDRAFT_10g027460 [Sorghum bicolor]gi|241917087|gb|EER90231.1| hypothetical protein SORBIDRAFT_10g027460 [Sorghum bicolor]
+-------------WSVPAAgaesyntwagRLRFQIGDQLLFVYPK-ETDSVLLVDAAAYNAC--NT-SSYITRFDDGSTVFTLDRSGPFFFVSGndASCR
+ANEKLIVVV-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 2146 * * 2946 * * * * * * * * * 2237 1210 * * * * * 1
+ 0 * * * * * * 4090 0 0
+
+N 2 5170 * 5130 3174 * * * * 5309 * * 3076 * 5034 * 4103 1085 2956 * * 2
+ 0 * * * * * * 6664 0 0
+
+A 3 4764 * * 5407 5086 * 2916 2131 5715 5449 * 5451 5262 5647 5452 * 4504 2091 5522 3117 3
+ 60 5647 5578 3000 193 * * 7471 1041 0
+
+T 4 5909 * 3804 2443 * * 4055 5284 3753 6239 * * 4179 5671 3817 3311 2003 4737 * 5565 4
+ 0 * * * * 1041 960 7609 0 1196
+
+V 5 4638 * * * * * * 1795 * 3185 * * * 5838 * * * 878 * * 5
+ 0 * * * * * 0 7646 0 1041
+
+K 6 4317 * 5837 2952 * * 4684 4693 4889 3446 5606 4515 * 3682 3746 3988 2401 3323 * 5008 6
+ 0 * * * * * 0 7646 0 1041
+
+M 7 * * * 5912 4380 * * 2474 * 2757 2137 * 6001 * * * 5525 1545 * * 7
+ 447 4205 2237 802 1230 * 0 7646 1298 1041
+
+G 8 3658 * 5472 3155 * 1408 * * 3514 * 4051 5175 * 5638 4420 4273 3914 4358 * * 8
+ 329 3777 2933 1018 982 783 1255 7218 1350 2668
+
+S 9 2983 5079 * 4341 * 2549 * * 5506 * * 4211 3886 * 4801 1719 3133 5239 * * 9
+ 515 4596 1950 1000 1000 2097 384 7335 1233 2470
+
+D 10 5184 * 1767 3323 * 3595 * 5036 4162 * * 3648 3561 4297 * 3236 3504 * * * 10
+ 322 * 2321 1000 1000 1811 484 6876 1028 3350
+
+S 11 2841 * 2037 3728 * 3175 * * * * * 3435 4000 5068 5141 2990 3447 * * * 11
+ 249 3513 3823 2297 328 654 1456 6866 1338 3594
+
+G 12 6234 * 4499 3772 5617 1713 4364 6143 3402 * 4881 5219 6040 3497 4572 3144 4215 * * 6263 12
+ 22 * 6049 * * 2894 208 8071 0 2274
+
+A 13 3652 * 3090 3071 6476 2377 * * 3813 6544 6585 3385 5252 3625 4458 3853 6271 4901 * 5380 13
+ 13 6813 * 523 1718 269 2557 8620 1083 2236
+
+L 14 5313 4520 5177 7244 3194 5510 6860 5238 5149 2846 3030 4251 4384 * 6975 5307 5209 5017 3475 2648 14
+ 0 * * * * 0 * 9056 0 1122
+
+V 15 2665 6070 5518 5065 * 3601 4990 5266 3232 4410 5995 5131 * 4876 3429 3373 3524 4567 * 3544 15
+ 0 * * * * * * 9173 0 0
+
+F 16 5524 * * * 842 6660 * 4773 * 5868 4656 * * * * * 6670 4423 4406 2228 16
+ 0 * * * * * * 9173 0 0
+
+E 17 4906 * 2687 2793 6127 5064 5255 5178 4593 4407 * 4291 5641 6078 5013 2640 3925 3085 7237 6283 17
+ 9 7277 * 3170 170 * * 9126 1000 0
+
+P 18 5187 * 4843 5775 6524 7098 * 6144 5287 4816 4991 6557 629 4559 6155 5059 4974 5704 * * 18
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+
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+ 0 * * 0 * * * 8162 0 0
+
+//
+�HHsearch 1.5
+NAME 0f1c654429f6f65b407c9e9dde84eba4
+FAM
+FILE 0f1c654429f6f65b407c9e9dde84eba4
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:25:17 2013
+LENG 87 match states, 87 columns in multiple alignment
+FILT 135 out of 1476 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 11.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCC
+>ss_conf PSIPRED confidence values
+997745798889748899999999985589871179787731307899999997358987368989794489999999999874899
+>Consensus
+xxxxxxCxxCxxxxxxxxxxxxhxxxxxxxxxxxCxxcxxxxxxxxxlxxHxxxxxxxxxxxCxxCxxxxxxxxxlxxHxxxhxxxx
+>0f1c654429f6f65b407c9e9dde84eba4
+MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK
+>gi|74194495|dbj|BAE37293.1| unnamed protein product [Mus musculus]
+YTQNLSMSRSYNVCATSFGFPSSFGRYQETPVgeQHCEQKVKNCPSAKSFYIHEMNDNADIDNEHKPFGRAPSSFGSCESRGRINTRKK
+>gi|328719973|ref|XP_003246915.1| PREDICTED: transcription factor Sp8-like [Acyrthosiphon pisum]
+-------------------------------mrtkskktgSYTCpnKSCNKIYKSKG-lQSEYRRqsnls---iSYKFTCPNCCRRYSHKPRLVHHLKHE
+cGYKRF
+>gi|1363187|pir||A56229 lymphoid transcription factor Ikaros/LyF-1, form IV - mouse
+GADGFRDFHAIISDRGMPSNVKVETQSDEENGRACEMNGEEC------------------------AEDLRMLDASGEKMNGSHR--
+>gi|26338808|dbj|BAC33075.1| unnamed protein product [Mus musculus]
+------------NVAKSLHVSVLFKST---KEFILTKSPRKLINEE-----------------------------------------
+>gi|335305641|ref|XP_003360261.1| PREDICTED: transcriptional activator GLI3-like [Sus scrofa]
+------SRQSLVPTPSQRMLMLGVHSPVRRRIAGTAlsACfpenliydTTVYAVATGLFPSTQQISALNRLILRLgYLFSINILSYSAVQLlTAELMEK
+>gi|255933664|ref|XP_002558211.1| Pc12g14050 [Penicillium chrysogenum Wisconsin 54-1255]gi|211582830|emb|CAP81032.1| Pc12g14050 [Penicillium chrysogenum Wisconsin 54-1255]
+----SRAGSCLEDLVCLGVNAAYttIFPRHPDQALQVPCLPKSLyktlAK-saqrDLLKRHVAGH--------------------------------
+>gi|312383158|gb|EFR28349.1| hypothetical protein AND_03879 [Anopheles darlingi]
+--------------------------------FQSETGEDSVKADiLDVLLAGRSKDEKNQ--IAPLLGVY-FLHELKTLsNLSHQLL-
+>gi|170056553|ref|XP_001864081.1| conserved hypothetical protein [Culex quinquefasciatus]gi|167876178|gb|EDS39561.1| conserved hypothetical protein [Culex quinquefasciatus]
+-----------------MNRIFQGASDEAK-----ASLLQDF-WIPKIRFM------------------------------------
+>gi|312093630|ref|XP_003147750.1| hypothetical protein LOAG_12188 [Loa loa]gi|307757084|gb|EFO16318.1| hypothetical protein LOAG_12188 [Loa loa]
+-PTETNPQLGHTLANTRNNYGQSSLGQPNYS-------GNQA----VLRRHkkYSRRASQ--F-CKLAQF-------LHFYPPQSFSA-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+
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+
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+
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+
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+
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+
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+
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+
+T 54 3335 * 4975 4458 6355 5273 5001 4001 3804 4299 5094 4553 4148 4064 3589 3462 3563 3242 * 5856 54
+ 74 4319 * 2178 360 2273 334 11607 2047 2830
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+H 55 4950 5387 4093 5163 5311 5482 1642 5196 3705 5071 5510 4328 4462 6741 4085 3759 4326 5287 * 5580 55
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+ 42 5461 7372 3992 94 1328 733 11539 1291 2896
+
+K 62 4738 5625 6736 3065 * 4763 * 3899 2908 4740 6745 5739 3781 3696 3410 3354 3707 4067 6108 5773 62
+ 0 * * * * 1523 617 11673 0 2611
+
+C 63 * 388 * 6502 * 6739 5903 6278 6916 4705 * * 6333 * * 5228 6024 4160 6090 6163 63
+ 42 5116 * 1994 417 2486 284 11402 1440 2008
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+
+C 66 5218 433 6163 * 5195 5947 * 5081 * 5015 * 6216 6040 * * 5536 6202 5432 6634 5835 66
+ 47 4952 * 3889 101 2104 382 11417 1429 2152
+
+G 67 4869 * 3699 5288 * 2257 4084 * 4263 4617 5036 4770 2911 5863 3667 3110 4535 6734 * 4727 67
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+D 74 5184 * 2850 3764 6470 3717 4589 5458 3149 4953 6247 4710 6486 6230 3703 2168 5297 5972 * 4409 74
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+H 79 * * * * * * 312 5288 5683 5199 * * 5950 5773 4903 6062 6143 * * 5305 79
+ 50 4873 * 1304 749 1242 792 11191 1542 1410
+
+Q 80 5652 6354 * 4063 5129 4860 4892 3819 3800 2490 2901 6095 6597 3377 4222 5569 5622 3467 6736 4610 80
+ 78 4241 * 673 1424 1436 666 11241 1941 1359
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+R 81 3372 6268 * 4253 * * 4297 4524 2637 3500 5266 5096 6580 4542 2118 4076 4425 4746 6324 * 81
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+
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+
+H 83 5133 5313 5402 4552 * 5887 742 6596 5989 5363 * 4585 * 4963 4930 4541 * 4810 * 5078 83
+ 20 6197 * 1000 1000 * * 10793 1007 0
+
+Q 84 6226 4701 * 5431 6095 4518 2057 5132 4670 4318 5100 4385 6829 4368 5037 2961 2557 6326 * 4919 84
+ 36 6321 6393 2585 263 * * 10645 1000 0
+
+N 85 4131 5005 3772 4413 * 1651 * * 3304 5894 5229 3813 4392 * 3202 4574 4544 5959 * * 85
+ 0 * * * * 0 * 10683 0 1000
+
+K 86 3617 6115 3318 1751 5938 5260 * * 3288 4718 5597 3602 5998 3585 4946 5930 4655 4909 * * 86
+ 0 * * * * * * 10297 0 0
+
+K 87 5424 * * * 5410 4539 5671 * 1242 4434 * 5424 5082 4378 2626 3542 4325 * 5447 * 87
+ 0 * * 0 * * * 9440 0 0
+
+//
+�HHsearch 1.5
+NAME 0f2381e4f46aa5af8618fb2c6a96974d
+FAM
+FILE 0f2381e4f46aa5af8618fb2c6a96974d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:33:29 2013
+LENG 162 match states, 162 columns in multiple alignment
+FILT 111 out of 666 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCEEEEEEEECEEEECCCCCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCEEEEEECCCCEEEEEEEEECCEEEEEEECCCCCCC
+CCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCC
+>ss_conf PSIPRED confidence values
+9822325999999663887189986999999998479986985065645068999999987741579997058600067899988799999878999886
+14739999997379674999716889778899999999984599999998819985763066
+>Consensus
+xxxxxxxxxvlxvxrvxkxtxxGrxxxfxalvvvGnxxGxvGxGxgKaxxxxxAixkAxxxAxxnlxxvxxxxxTIxxxvxgkxgsxxVxlxpapxGxGi
+xaxxxixxilxlaGixdvxxkxxGsxnxxNxvkAtfxaLxxxxtxxxiaxxrgxxxxxxxxx
+>0f2381e4f46aa5af8618fb2c6a96974d
+MPETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGV
+IAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQAQG
+>gi|148680994|gb|EDL12941.1| mCG51731 [Mus musculus]
+-----FplgtslNDEVLKIMPVRKQTWAGQGTRFKALVTISDYDDHTGLGVKYSTEVPMPSEEPQSWPSFPSSLCREAtgehdwqaPR---CPMQGHrsq
+wlCAG-TSQSHPCPTGTGIVSASVLKKLLMIPSIDDCYTSARGYTaTLGNFAKATFDVISKT--------------------
+>gi|340373345|ref|XP_003385202.1| PREDICTED: 28S ribosomal protein S5, mitochondrial-like [Amphimedon queenslandica]
+----DFHSVILDMYRARWKCSMGSQFAIQTSVIVGNGKGMVGFGVARSKDMRGCIRRAKNRAVKQLRCIPIcEGHTIFHNIKSKCVRTRVLMERKEKGFG
+LRCNPKLQAVMQLIGIKDIRIKQLGSNHVGHLVRATLSGLLGQETYESLANKTGE--------
+>gi|340503743|gb|EGR30274.1| hypothetical protein IMG5_136340 [Ichthyophthirius multifiliis]
+----------LSRGLTTKVTTLQRIQSYRYLIFMGNGNGLVGYGKGKGSDFEEALDNAILHCKRNLIAIPLDlYHTVPRQLYGQYNRFEITVTPAR-TFN
+PWGSPIIASMLLLTGFRHCRFQTVSKKiNPYSMIMAYFKMITQNKTPKDICEETGQKVYR----
+>gi|242085790|ref|XP_002443320.1| hypothetical protein SORBIDRAFT_08g017450 [Sorghum bicolor]gi|241944013|gb|EES17158.1| hypothetical protein SORBIDRAFT_08g017450 [Sorghum bicolor]
+------------------------------------------------------------------------------------------MPLAPRGPGS
+SPPVSPRMSSSSLELRTSSPRPMASPrHCESNFYATFDCLMKTygfLTPEFWTETKY---------
+>gi|330802661|ref|XP_003289333.1| hypothetical protein DICPUDRAFT_80106 [Dictyostelium purpureum]gi|325080586|gb|EGC34135.1| hypothetical protein DICPUDRAFT_80106 [Dictyostelium purpureum]
+--------NLVSVGRHTSVTRAGRVFNFSATVFNGDGEGTASRGYGKGDTAVSALRRATKDAERRAFTLDRFrDYTLPSGLDMKYRSTKVRFFKSKDYDQ
+MDhSGYKQTIILPTIGLHGVTFRTYGRRNWNNVLLAIQNGLPNYTNPEEAARIMGKRFIV----
+>gi|71665096|ref|XP_819522.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]gi|70884826|gb|EAN97671.1| hypothetical protein, conserved [Trypanosoma cruzi]
+------------DMRVVKFSPKDHRQWIYCVLYVGSGKGIAGWGRAVAPSTQEAKKEAIREAFSNIIAVDLEQEGPMYPVRVNADGVRVLLYPAKR---I
+VANFRVADILCAFGFQHAGCRINlkATNNpksPTHTVEGVFEAVKALRSVSEIAASRGKVPHS----
+>gi|294932638|ref|XP_002780367.1| hypothetical protein Pmar_PMAR016562 [Perkinsus marinus ATCC 50983]gi|239890300|gb|EER12162.1| hypothetical protein Pmar_PMAR016562 [Perkinsus marinus ATCC 50983]
+-NYEGLRQHLMAVSRLCSMAPNGRVYYYRCILMVGNGKGVYGFGVGYGNTITTARADAAMQALKRLQFVDLDsSRTLHAPVIAREYGQKCKILPLPAESG
+ILCNRRYLPWVYIMGLHNVELKFEGELSWLSRTRAITRTTSMIMSRRTVANGEGKK-------
+>gi|170056144|ref|XP_001863899.1| 40S ribosomal protein S2 [Culex quinquefasciatus]gi|167875968|gb|EDS39351.1| 40S ribosomal protein S2 [Culex quinquefasciatus]
+-------------------------------------------------MIMHAIRGAIILAKLSVVPVRRGywgnkigkPHTVPCKVFGKCGSVLV--R
+PAWPCLPLTSP-----LL-ADSPDFCDARSCCSTRPFDFVAA----------------------------
+>gi|11496544|ref|NP_044554.1| ribosomal protein S5 [Toxoplasma gondii RH]gi|5231247|gb|AAD41141.1|U87145_10 ribosomal protein S5 [Toxoplasma gondii]
+-----ILQKIIEIKKISKTKQKGRIRRFKVLLLIGAKNAWIGIGVSKDFYLQEAINKARFFAFKKIYFFYiiLEklfyySNTIN--------KIKCIIIY
+KPIFYGIQVSFLIQIFLDLLGYNVLIIKIFKHTtkyTLINF-------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 2633 * * * * * * * * 1465 1617 * * 2732 * * * * * * 1
+ 0 * * * * * * 2644 0 0
+
+P 2 3277 * 3293 * * * * * 3188 * * 1060 2283 * * * * * * * 2
+ 0 * * * * * * 3456 0 0
+
+E 3 3901 * 4158 1842 * * 3351 * 2437 * * * 2686 * 4232 * * * * 3226 3
+ 0 * * * * * * 3831 0 0
+
+T 4 4746 * 3082 1722 * * * 5335 3191 * 4840 4207 4643 * 3711 3252 4371 4364 * * 4
+ 113 3732 * 1000 1000 * * 4541 1119 0
+
+D 5 6601 * 1956 2936 * 2771 * * 4237 * 6109 3280 4604 3577 4997 3073 6774 * * * 5
+ 96 3963 * 778 1263 * * 5480 1206 0
+
+F 6 * 6454 * 5625 1523 * * 3595 * 1683 4246 * * * * 6025 * 4903 3259 5630 6
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+
+E 7 5114 * 3322 2135 4979 6062 5206 5803 3053 4023 * 4374 * 3549 2870 4041 * 5287 * 6265 7
+ 0 * * * * * * 5817 0 0
+
+E 8 * 5306 3028 1669 6134 5386 6496 * 5677 * 5502 6654 * 4240 3720 3066 3743 3641 * 4884 8
+ 0 * * * * * * 5882 0 0
+
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+ 0 * * * * * * 5949 0 0
+
+M 10 * 4999 * * 5434 5420 * 2389 * 2004 5038 6195 6383 * * * 5330 1318 * * 10
+ 27 5764 * 3907 100 * * 5963 1039 0
+
+I 11 * * * * * * 5490 2078 * 1439 3523 * * * * * * 1811 * * 11
+ 0 * * * * * 0 6147 0 1039
+
+L 12 4155 * 2905 2386 5296 5784 4694 5645 2372 5680 6024 5372 * 4301 5171 3327 4707 4375 * * 12
+ 30 5592 * 3700 115 0 * 6147 1060 1039
+
+I 13 5878 * 4742 * * * 6562 1727 6366 3861 5392 5813 * 6732 4181 4032 4657 1621 * 5641 13
+ 9 7336 * 2000 415 * * 6182 1000 0
+
+R 14 4736 6567 4196 * * 3595 4543 6682 2277 4858 3785 2752 * * 2482 3722 4965 * * 6217 14
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+
+R 15 5625 * * * 6750 5397 * 5372 4273 4251 4237 5195 4047 5401 863 3898 5999 6533 * 6567 15
+ 0 * * * * * * 6197 0 0
+
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+ 0 * * * * * * 6197 0 0
+
+A 17 3376 3646 * 5692 4944 * 6567 6964 * * 6205 * * 2438 4019 2288 2192 3839 * * 17
+ 0 * * * * * * 6197 0 0
+
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+
+M 19 * * * * 5920 6576 * 5663 4900 5430 2001 * 6432 2519 6545 * 3188 1556 * * 19
+ 38 5254 * 0 * 0 * 6151 1095 1105
+
+Q 20 4981 4922 5663 * * * 5542 7255 5302 5515 4734 6963 * 7286 5112 5934 872 2442 6280 * 20
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+
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+ 62 4566 * 3431 140 * * 6191 1194 0
+
+G 22 2939 * * 4789 5220 1382 6228 * 2772 4135 5296 4467 * 6758 6765 3937 5564 5554 * 6734 22
+ 53 4802 * 791 1244 * * 6191 1166 0
+
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+
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+
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+
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+
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+
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+
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+
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+
+V 32 3302 6978 * * * 5072 * 2977 * 3752 5265 * * * 5663 5675 3999 955 * 5961 32
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+
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+
+V 34 4087 4829 * * 4747 6280 * 2383 7131 6063 5476 5963 8814 * 6667 6640 3246 1071 * * 34
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+
+G 35 * * * * * 41 * * * * * * * * * 5153 * * * * 35
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+
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+ 33 5447 * 0 * 0 * 6126 1121 1058
+
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+
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+
+G 39 6077 * 4638 * * 225 * * 5817 * * 5044 * * * 6947 * 6213 5654 * 39
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+
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+
+G 42 * * * * * 142 * * * * * * * * 5654 3971 * 6643 * * 42
+ 0 * * * * * * 6191 0 0
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+//
+�HHsearch 1.5
+NAME 10cfcdaad4a10e98aec756d8a15574d9
+FAM
+FILE 10cfcdaad4a10e98aec756d8a15574d9
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:56:34 2013
+LENG 154 match states, 154 columns in multiple alignment
+FILT 103 out of 156 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEEECCCCEEEEECCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEECCHHHCCCCCCCCCEEEEE
+EECCCCCEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCC
+>ss_conf PSIPRED confidence values
+9887648889961058899999999951378887554479999877887557988999974997899982499959999855735624377822006999
+963799389997116995797477799078977168987677525779976079
+>Consensus
+xxxxxxxxxixDxxqkxlvLxxxxllAxxxxxxxxxxxxxxxxxxxxxxxxxxxPVxLgIxxxnlxLsCxxgxxPxLqLeexxxxxLxxxxxxxxrFlFy
+kxxxGxtxtFESaaxPgWFIsTsxxxxxPVxLtxxxxxxxxxxxxtxFxxxxxx
+>10cfcdaad4a10e98aec756d8a15574d9
+VLSGALCFRMKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASLSPVILGVQGGSQCLSCGTEKGPILKLEPVNIMELYLGAKESKSFTFY
+RRDMGLTSSFESAAYPGWFLCTSPEADQPVRLTQIPEDPAWDAPITDFYFQQCD
+>gi|291386333|ref|XP_002709615.1| PREDICTED: interleukin 1 family, member 6-like [Oryctolagus cuniculus]
+-----VLRHIQDLNHQVWVVQDQTLTA-VPRKHSMVP-ATVSLIPCQYPetlETeKGIPMYLGLDKPDVCLFCtKTREQPMLQLEDKNIMTLYHHPEPVK
+PFLFYHSKSGRTSTFESVAFPGWFIAVCSEGGCPLFLTQ-DLGK---AYTTDFELTP--
+>gi|194220472|ref|XP_001496063.2| PREDICTED: interleukin-1 family member 7-like isoform 1 [Equus caballus]
+-----EKFSIYDQDHKVLVLDCGILRAV-PDRP-YILPETFFVLASHlssACEEKGSPILLAVSKGELCLCCekDKGQsKPSLQLKKKKLTDLATEKEQA
+RQpFIFYRAEVGSKNTLESVTHPGWFICTSCNSGEPVGMTDILG----KREHTEFSFRR--
+>gi|262342547|gb|ACY54774.1| interleukin-1 beta [Hippoglossus hippoglossus]gi|262342549|gb|ACY54775.1| interleukin-1 beta [Hippoglossus hippoglossus]
+------PCNISDSQKRNFLLVQNSMelhavmLQGGSDNRKVL--LNMSTYVHPSPTIEARPVALCIKDTDLYLSChHEDGVPTLHLEPVeDKTSLKTitR
+ESEMVRFLFYKRDSGVnISTLMSARFPDWYISTSEYENRPVMMCQ-ESA----QSYQTFNIQ---
+>gi|52346210|ref|NP_001005149.1| interleukin-1 beta [Sus scrofa]gi|407900|emb|CAA52660.1| interleukin 1-beta [Sus scrofa]
+---QSVDCKLQDKDEKALVLAGpHELKALHLLKGDLKREVVFCMsfVQGD-DSDDKIPVTLGIKGKNLYLSCvMKDDTPTLQLEDVDPKS-YPKRDMEKR
+FVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGR----QDITDFTME---
+>gi|10241835|emb|CAC09435.1| interleukin-1 beta [Scyliorhinus canicula]gi|38145475|emb|CAC80866.1| interleukin-1-beta [Scyliorhinus canicula]
+---------MTDDQDRSLILSeNLQLLAMSLQQSKDAVQLDVRYYKTTPTTEDDLPVVMAISNQNLFLSCvGTQDSPRVQLEKWDRKLQNIsSTTDLLRF
+VFFKkvSSSGLHFELESAMYRGWYVSTSRRNRQPIELDE--KKNH--KRITIF------
+>gi|225706200|gb|ACO08946.1| Interleukin-1 beta precursor [Osmerus mordax]
+--------SLFDCNQKMLVRKDSQALQLqATHLKENMDYKKVTFklVkyVNP-QARGRDAVILWIAGSSKILSCtrpHDSNTPILKLEKENCEQLKSieA
+MGEMARFLFYRRTVDvYDTIFESVKFPGWLIRSSLSEHKPVEMCE--------------------
+>gi|183223721|emb|CAP69657.1| interleukin 1 beta [Labeo rohita]
+----TLQCTICHKYKKSLVLSDelNtqdlHLKAVTLTGGNMNLKVRISMsaYYTSTPQNIGQPVCLGISNSNLYLACtKSDDSslPKLLLKEVSgPLNII
+NvgDSDEYDSLLFFRKETGTaYNTFESVKHPGWFISTAFEDTERVEMEKTPTD-----RPSNFTLED--
+>gi|58010|emb|CAA39086.1| interleukin-1 alpha [synthetic construct]gi|208534|gb|AAA72919.1| interleukin 1-alpha [synthetic construct]gi|208633|gb|AAA72560.1| interleukin 1-alpha [synthetic construct]gi|738207|prf||1924310A interleukin 1alpha
+-----YEFILNDALNQSIIRANDQYLtAAALHN--LDEAVKFDMGAYKsSKDDAKITVILRISKTQLYVTAQDEDQPVLLKEMPEIPKTITG--SETNLL
+FFWETHGTKNYFTSVAHPNLFIATKQDYW--VCLAG---GP---PSITDFQIL---
+>gi|197927464|ref|NP_001117868.2| interleukin-1 receptor antagonist [Oncorhynchus mykiss]gi|197631658|emb|CAD88595.2| interleukin-1 receptor antagonist [Oncorhynchus mykiss]
+-----------------------------------TP-EKITIYHYKsdCVdgEFRGVPVVLNFTSSNCFLKCvKDGERVSLCVGTCDQHRLKSirkDDE
+EIQAFVFYMKAEMSkQRRFESAYCQGWFIHTSNE--TKVVLGK-PQG----------------
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
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+ 0 * * * * * * 4618 0 0
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+C 153 * 2214 1719 2261 * * * * * * * * * * * 1878 * * * * 153
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+D 154 2728 * 2824 2124 * * * * * * * * * 3185 1440 * * * * * 154
+ 0 * * 0 * * * 2248 0 0
+
+//
+�HHsearch 1.5
+NAME 1189797f72eb6f0e100dc3369ccd8ffa
+FAM
+FILE 1189797f72eb6f0e100dc3369ccd8ffa
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:20:13 2013
+LENG 122 match states, 122 columns in multiple alignment
+FILT 133 out of 572 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
+CCCCHHHCCCCHHHCCCCCCCC
+>ss_conf PSIPRED confidence values
+9899999999982998379996468762689999826057578862067887762268604326899989976869997689999785899999999852
+2423876278865457999898
+>Consensus
+xlxqlxxMixxxxxxxxxxxyxxYGCxCxxxGxGxPvDxiDxxCxxhxxCyxcxxxCxxxxxxYxxxxxxxxixCxxxxxCxxxlCeCDxxxAxcxxxxx
+xxynxxyxxxxxxxCxxxxxxc
+>1189797f72eb6f0e100dc3369ccd8ffa
+SLFELGKMIWQETGKNPVKNYGLYGCNCGVGGRGEPLDATDRCCFVHKCCYKKLTDCDSKKDRYSYKWKNKAIVCGKNQPCMQEMCECDKAFAICLRENL
+DTYNKSFRYHLKPSCKKTSEQC
+>gi|70907000|gb|AAZ15113.1| otoconin [Gallus gallus]
+-LLNFVNKMKCVSGFCP-RDFEDYGCSCRFEMEGLPVDEADECCFQHRKCYEEAmeMECtwDPSKISTDVTCSAENLSCENGDPCEQFLCTCDKDAIECF
+GNA--HINSSLNGLDV----------
+>gi|76468986|gb|ABA43328.1| phospholipase A21 precursor [Trichoplax sp. BZ10101]gi|76468988|gb|ABA43329.1| phospholipase A21 precursor [Trichoplax sp. BZ10101]gi|76468990|gb|ABA43330.1| phospholipase A21 precursor [Trichoplax sp. BZ46]gi|76468992|gb|ABA43331.1| phospholipase A21 precursor [Trichoplax sp. BZ264]gi|76468994|gb|ABA43332.1| phospholipase A21 precursor [Trichoplax sp. BZ264]gi|76468996|gb|ABA43333.1| phospholipase A21 precursor [Trichoplax sp. BZ413]gi|76468998|gb|ABA43334.1| phospholipase A21 precursor [Trichoplax sp. BZE8]gi|76469000|gb|ABA43335.1| phospholipase A21 precursor [Trichoplax sp. BZF1]
+SALNFQSMISYTTGRSA-LAFNGYGNWCGLGPYFstpPTVDSVDACCKAHDNCYSDT-GCNllqwEVLNPYDWHKsSTGRITCDDaPGSCDRANCECDRI
+AAECFARY--KYNCDYAPLS-----------
+>gi|313234543|emb|CBY10500.1| unnamed protein product [Oikopleura dioica]
+--SEFQTLMKFYNSNFSLDTHGQYGCKCQYMvtdrplsaGPAgpVSVDELDATCQAHKDCYRCAkekfgESCIPEFNNYQYEYVGNEIECTSsAGSCNRA
+LCECDLKFAKEHVAKIDVYDEKLTLFN-----------
+>gi|313220609|emb|CBY31456.1| unnamed protein product [Oikopleura dioica]gi|313226182|emb|CBY21325.1| unnamed protein product [Oikopleura dioica]
+-LRQFRRLYTFYLvGYrlRP-AHLVQYGCWCFPrgqliMGYGQPIDGIDATCRNHQLCLNCVgldtnYECNPHTQPYRVYgqiYQNGrRLMCKDpPGSCA
+WLACQCDVNMVTtSIIESLKGYKPRFWMYDPGRC-------
+>gi|313225501|emb|CBY06975.1| unnamed protein product [Oikopleura dioica]
+-VLTLKEIILKPTGKRNAiglErfginmGAFDYGCHCSAllagktAGFGTAVDALDMICKDYLGCTrcvQKVTNCQVS-VNYNFEMGDSGVICTEmDGSC
+EKNICECDAMFYRDLLHAAysgIVYNYKYNAdsFDpSSSCHV-----
+>gi|313212373|emb|CBY36361.1| unnamed protein product [Oikopleura dioica]
+------KLVQHFTSI-DIEKLQDYGCA-GRGyfdstepAVGLPVDEIDRSFIWWKKCIKCAqSEYSAydleynhfdYREFYEFDF--DSEICGGSETVEH
+AICQCDKSFAKRLIDL--TENNDFHNYDTDSCVRFTP--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 16 * 6547 * * * * 6157 0 0
+
+R 97 1519 * 7348 5974 4661 3497 5652 4495 3319 5551 7267 6221 * 4542 3304 3718 6110 4473 6861 7150 97
+ 0 * * * * * 0 6146 0 1016
+
+E 98 3380 * 3211 3443 5673 5378 4822 * 2789 5399 * 4074 6929 3820 2314 4195 4535 * * 5692 98
+ 106 * 3819 * * * 0 6146 0 1016
+
+N 99 2646 * 6773 4866 5370 5902 4120 5432 4372 4000 5910 2660 * 4804 5702 2818 4217 3397 * 4506 99
+ 475 3939 2217 450 1900 2200 354 6227 1273 1576
+
+L 100 2823 * 5358 3148 5431 * * 3359 4174 2241 6532 * 5357 6525 2962 3832 5694 4230 5908 * 100
+ 115 3702 * 2477 286 1545 605 6023 1310 2572
+
+D 101 3376 * 2775 4104 5800 3806 4000 4610 4974 6237 * 4145 2678 5142 4227 3902 5502 4382 6914 5518 101
+ 45 5562 6667 1298 753 0 * 6076 1050 2050
+
+T 102 5163 * 4532 3316 5214 5872 5400 5103 3444 5645 * 6843 3222 5433 6673 2615 2474 3073 * 6803 102
+ 18 6301 * 0 * * 0 6278 1018 1000
+
+Y 103 * 6632 * 6325 2371 * 6871 5163 6738 5209 6124 * 6553 * * * 6492 5889 3043 897 103
+ 0 * * * * * 0 6278 0 1000
+
+N 104 5994 * 2412 5735 * 6917 4987 7404 4300 * * 964 5641 6220 5431 4293 5096 4973 * * 104
+ 0 * * * * * 0 6275 0 1000
+
+K 105 3672 5679 4863 3473 6866 5212 7035 5752 2751 4221 5476 3415 2974 3983 5333 3593 4970 4138 * 6568 105
+ 32 * 5503 * * * 0 6275 0 1000
+
+S 106 3176 * 3188 3358 * 4951 6226 * 2123 4605 * 3879 * 5344 3878 3376 4097 6527 6813 5026 106
+ 39 6872 5784 0 * 458 1878 6206 1000 1121
+
+F 107 * * * * 2232 * 2854 * 6520 3411 * 3224 * 6573 * * * * * 1230 107
+ 16 * 6514 * * * 0 6258 0 1122
+
+R 108 4288 * 5575 4519 4061 * 2071 6881 3111 5423 5346 4701 * 4265 3144 3708 4611 5475 4786 4863 108
+ 52 4825 * 597 1561 1511 623 6254 1124 1180
+
+Y 109 4425 * 4239 4906 3679 3195 3659 4313 * 4071 5017 2723 4966 6084 4752 3370 4882 4341 * 4483 109
+ 78 4255 * 1182 838 1714 524 6239 1233 1098
+
+H 110 * 6161 6283 5348 1836 6421 3847 3966 6411 2972 4451 6362 6121 6479 * 5356 * 4406 6547 2195 110
+ 85 4834 5497 414 2004 * 0 6196 1105 1051
+
+L 111 * * 1380 5075 4879 5277 5810 * 5495 4570 5960 3901 3003 6389 6309 3904 5191 * 3409 5403 111
+ 308 2445 6824 829 1194 * 0 6105 1636 1166
+
+K 112 4000 * 4819 5225 * 3870 * * 2508 * * 3273 5847 3215 2993 2789 3151 * * 5657 112
+ 108 3797 * 0 * 765 1281 6054 1218 1203
+
+P 113 4131 * 4807 2706 5776 4917 * 5397 2625 4723 4370 3499 4243 4868 6466 2593 4240 5324 * * 113
+ 138 3762 5850 0 * 415 1999 5873 1168 1137
+
+S 114 5732 * 6417 4041 3864 * 3492 5980 3051 3503 5486 3804 5957 4257 2786 3434 5376 5105 * 3767 114
+ 43 5077 * 0 * 856 1160 5682 1029 1052
+
+C 115 * 0 * * * * * * * * * * * * * * * * * * 115
+ 22 6049 * 2000 415 * 0 5742 1010 1000
+
+K 116 * * 4630 3172 5830 3771 5175 * 2935 4853 * * * 2002 2966 4652 3679 3850 * * 116
+ 0 * * * * 0 * 5555 0 1000
+
+K 117 3142 * 4319 3832 * 1740 4938 * 1993 * * 5492 * * 3368 5128 * 4820 * * 117
+ 0 * * * * * * 5213 0 0
+
+T 118 3793 * 6065 2376 4078 * 3796 * 3636 * * 4785 2878 4043 4283 5051 3162 4948 4323 * 118
+ 0 * * * * * * 4753 0 0
+
+S 119 4894 * * * * * * * 2263 * * * 3423 * 2831 2305 1827 * * 4638 119
+ 0 * * * * * * 4439 0 0
+
+E 120 * * * 2428 * * * * * 3629 4307 * 806 * * 4333 * 4029 * * 120
+ 100 3903 * 3907 100 * * 4338 1010 0
+
+Q 121 3373 * * 3194 3902 * * * 2601 * * 2664 4428 2727 * 3682 * 4040 3871 * 121
+ 102 3871 * 1391 693 * * 4234 1089 0
+
+C 122 * 0 * * * * * * * * * * * * * * * * * * 122
+ 0 * * 0 * * * 4134 0 0
+
+//
+�HHsearch 1.5
+NAME 11d0ff4d993e31f0a2ea189846a08655
+FAM
+FILE 11d0ff4d993e31f0a2ea189846a08655
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:25:41 2013
+LENG 80 match states, 80 columns in multiple alignment
+FILT 25 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
+>ss_conf PSIPRED confidence values
+99888761999987168559999999869740999971788678745862899999999999987004568870451068
+>Consensus
+xpyxxDxSixsxLtxLGcxncidxFtxqglxxixqLxxxxmeDLxxmkIxxxxrxxIWkxlxexxqxxdyxxxpxlxrxx
+>11d0ff4d993e31f0a2ea189846a08655
+GSYHADPSLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDLKQGHDYSTAQQLLRSS
+>gi|47218894|emb|CAG05660.1| unnamed protein product [Tetraodon nigroviridis]
+-PYPMDSSISSFLLRLGCAGCLDYFTAQGLTNIYQIENYNMEDLSRLKIPSEFQHIIWKGIMEHRQAMDFSPPPHIVRST
+>gi|323772104|gb|ADL27911.1| tumor suppressor p53-like protein [Branchiostoma belcheri tsingtauense]
+---DADGTVADWLTKLGCASCIETFHRKRINFLSQLEEINLQDLHEMKLTERLVDKIWKGIIEYKAAKDFSDTPSLLR--
+>gi|291224284|ref|XP_002732135.1| PREDICTED: p63-like transcription factor-like [Saccoglossus kowalevskii]
+----PDNSINEWLSKFGCENYSEIFKKKGYLSIHQLDDITIEDLDDMKISPQQKDKIWKAIIDHRAADNFSSTPSMLQ--
+>gi|217273135|gb|ACK28180.1| p63/p73 [Mya arenaria]
+---MQDNSVSTWLNALGLGAYIDGFHEQTLYSLLQLDDFSLDDLAKMKIGNSHRNKIWKSLLELRNQGFT----------
+>gi|82471258|gb|ABB77690.1| p63(62) transcription factor [Euprymna scolopes]
+---PNENTIAQWLTKLGLQAYIDNFQQKGLHNMFQLDEFTLEDLQSMRIGTGHRNKIWKSLLDYRRVLST----------
+>gi|115898454|ref|XP_001196748.1| PREDICTED: similar to p63(47) transcription factor [Strongylocentrotus purpuratus]gi|115945815|ref|XP_001184464.1| PREDICTED: similar to p63(47) transcription factor [Strongylocentrotus purpuratus]
+----QDPSIDCFLKRLGLRQHSDIFTQKNVHTVDQLEEINMEDLSS--IPHQQREILWKAILELKGGLQLNHTPTMNR--
+>gi|297522160|gb|ADI44410.1| p53-like transcription factor [Biomphalaria glabrata]
+----RDNSVAGWLDRLGLSNYIDRFHQNGYDNLFQLDECKKETLEHLGIPEVDRNKIWKSLVEFHQ--------------
+>gi|70632939|gb|AAZ05996.1| delta-N p63/p73-like protein [Mytilus edulis]gi|112819488|gb|ABI23724.1| delta-N p63/p73-like protein [Mytilus edulis]
+---NGDHSISNWLTTLGLSAYIDNFHQQNLFTMEQLDDFTVEDLQKMRIGTSHRNKIWKALVEFHSeSITISDSQSLQR--
+>gi|169349567|ref|ZP_02866505.1| hypothetical protein CLOSPI_00294 [Clostridium spiroforme DSM 1552]gi|169293642|gb|EDS75775.1| hypothetical protein CLOSPI_00294 [Clostridium spiroforme DSM 1552]
+---------------EGCSNC-EYFSKNGLPLIEeefgdhmKIVKYNMDDRESVDEVRNAYDEVVNNIIDFNQ-DDYGFGPFLV---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 0 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+S 2 * * * * * * * * * * * * 93 * * 3995 * * * * 2
+ 0 * * * * * * 1905 0 0
+
+Y 3 * * * * * * * * * * * * * * * * * * * 0 3
+ 0 * * * * * * 1905 0 0
+
+H 4 * * 3221 * * * 2631 * * 3946 2856 1926 1915 * * * * * * * 4
+ 0 * * * * * * 2842 0 0
+
+A 5 1996 * * * * 4153 * * * * 3659 4080 2637 3042 3903 3954 3390 4450 * * 5
+ 0 * * * * * * 3139 0 0
+
+D 6 * * 88 4080 * * * * * * * * * * * * * * * * 6
+ 0 * * * * * * 3139 0 0
+
+P 7 * 3789 * * * 3597 4153 4119 * * * 1601 1599 * * 3806 * * * * 7
+ 0 * * * * * * 3139 0 0
+
+S 8 * * * * * * * * * * * * * * * 220 2819 * * * 8
+ 0 * * * * * * 3139 0 0
+
+L 9 * * * * * * * 1443 * 1609 * * * * * * * 1717 * * 9
+ 0 * * * * * * 3139 0 0
+
+V 10 1529 5057 3837 * * * * * * * * 3860 * * * 2420 * 1747 * * 10
+ 0 * * * * * * 3139 0 0
+
+S 11 4119 3837 3597 3860 * 3903 * * * * * 4153 * 4080 * 1037 4281 * * * 11
+ 0 * * * * * * 3139 0 0
+
+F 12 * * * * 967 * * * * * * * * * * * * * 1034 * 12
+ 0 * * * * * * 3139 0 0
+
+L 13 * * * * * * * * * 0 * * * * * * * * * * 13
+ 0 * * * * * * 3139 0 0
+
+T 14 3789 * 3903 * * * * * 3837 3659 * 3198 * * * 3860 906 * * * 14
+ 0 * * * * * * 3139 0 0
+
+G 15 4281 * * * * 2152 4119 * 2248 * * * * * 1794 3174 4153 * * * 15
+ 0 * * * * * * 3139 0 0
+
+L 16 * * * 2363 4210 * * 4650 * 490 * * * * * * * * * * 16
+ 0 * * * * * * 3641 0 0
+
+G 17 * * * * * 0 * * * * * * * * * * * * * * 17
+ 0 * * * * * * 3641 0 0
+
+C 18 * 573 * * * * * * * 1609 * * * * * * * * * * 18
+ 0 * * * * * * 3641 0 0
+
+P 19 2516 * * 4210 * 3476 * * * * * * 2211 3379 4064 1692 * * * * 19
+ 0 * * * * * * 3641 0 0
+
+N 20 2027 * * * * 4897 * * * * * 896 * 4064 * 3014 * * * * 20
+ 0 * * * * * * 3641 0 0
+
+C 21 * 769 * * 4989 * 4064 * * * * * * * * * * * * 1635 21
+ 312 * 2363 * * * * 3641 0 0
+
+I 22 * * * * * * * 495 * 2722 * * * * * 2849 * * * * 22
+ 0 * * * * 0 * 3139 0 1332
+
+E 23 * * 953 1048 * * * * * * * * * * * * * * * * 23
+ 0 * * * * * * 3641 0 0
+
+Y 24 * 5545 * * 3746 4548 * 3135 * * * 2450 * * 4224 4408 3906 * * 1332 24
+ 0 * * * * * * 3641 0 0
+
+F 25 * * * * 0 * * * * * * * * * * * * * * * 25
+ 0 * * * * * * 3641 0 0
+
+T 26 4989 * * * * * 1765 * 4210 * * * * 4627 * 4025 948 * * * 26
+ 0 * * * * * * 3641 0 0
+
+S 27 3954 * * 2947 * * * * 2009 * * * * 2336 3906 2086 4131 * * * 27
+ 0 * * * * * * 3641 0 0
+
+Q 28 * * * * * * 4408 * 1576 * * 2528 * 1171 * * * * * * 28
+ 0 * * * * * * 3641 0 0
+
+G 29 * * * * * 516 * * * * * 2388 * * 3906 * 4548 * * * 29
+ 0 * * * * * * 3641 0 0
+
+L 30 * * * * 4650 * * 2824 * 618 * * * * * * * 4064 * 3217 30
+ 0 * * * * * * 3641 0 0
+
+Q 31 * * 4224 * 3452 * 3318 * * 3413 * 3411 2363 2086 * * 3407 * * 4548 31
+ 0 * * * * * * 3641 0 0
+
+S 32 * * * * 3906 * * * * 2363 * 1790 * * * 1909 2446 * * * 32
+ 0 * * * * * * 3641 0 0
+
+I 33 * * * * * * * 923 * 2432 3005 * * * * * * 2621 * * 33
+ 0 * * * * * * 3641 0 0
+
+Y 34 * * 4064 2472 2902 * 4210 4408 4098 4548 * * * * * 3906 * * * 1485 34
+ 312 2363 * 2807 222 * * 3641 1332 0
+
+H 35 * * * * * * 2230 * 2363 * * * * 755 * * * * * * 35
+ 0 * * * * * * 3641 0 0
+
+L 36 * * * * * * * 1662 * 548 * * * * * * * * * * 36
+ 0 * * * * * * 3641 0 0
+
+Q 37 * * 1635 2011 * * * 4098 * * * * * 2086 * * * 2879 * * 37
+ 0 * * * * * * 3641 0 0
+
+N 38 * * 2410 1650 * * 5070 * 2879 * * 1880 * * * * 4168 * * * 38
+ 0 * * * * * * 3641 0 0
+
+L 39 * 4224 * * 2221 * * 2470 * 2086 * * * * * * * * * 1662 39
+ 0 * * * * * * 3641 0 0
+
+T 40 * * 4098 * * * * * 4224 * * 1613 * * * 2066 1634 * * * 40
+ 0 * * * * * * 3641 0 0
+
+I 41 * * * * * * * 2253 4224 1785 1314 * * * * * * 4497 * * 41
+ 0 * * * * * * 3641 0 0
+
+E 42 * * 1671 691 * * * * * * * * * 3906 * * * * * * 42
+ 0 * * * * * * 3641 0 0
+
+D 43 * * 153 * * 4413 * * * * * * * * * * 4224 * * * 43
+ 0 * * * * * * 3641 0 0
+
+L 44 3746 * * * * * * * * 398 4413 * * * 4025 * 4098 * * * 44
+ 0 * * * * * * 3641 0 0
+
+G 45 2578 * 4210 2528 * 2376 3906 * * * * * * 3560 * 2607 3746 5486 * * 45
+ 0 * * * * * * 3641 0 0
+
+A 46 2279 4413 4210 3906 * * 4224 * 2898 5486 * * * * 3954 1769 4098 * * * 46
+ 163 * 3228 * * * * 3641 0 0
+
+L 47 * * * * 3595 * * * * 1187 1282 * * * * * * 3903 * * 47
+ 0 * * * * * 0 3484 0 1223
+
+K 48 * * 2741 * * 4066 * * 664 * * * * * 3386 * 3965 * * * 48
+ 0 * * * * 1007 993 3484 0 1223
+
+I 49 * * * 2977 * * * 461 3675 3874 * * * * * * * * * * 49
+ 0 * * * * * 0 3580 0 1058
+
+P 50 * * * * * 2173 * * * * * * 1155 * * 4163 3874 2285 * * 50
+ 0 * * * * * 0 3580 0 1058
+
+E 51 * * 3764 1666 * * 4040 * 2833 * * 3418 4163 * 3946 4834 2638 * * * 51
+ 0 * * * * * 0 3580 0 1058
+
+Q 52 3162 * * 3889 * 4582 5016 * 3675 * * 3946 * 1520 3874 2939 * 4114 * * 52
+ 0 * * * * * 0 3580 0 1058
+
+Y 53 2285 * 4114 * 2702 * 2173 * * 3874 * * * 3100 * 4915 * * * 2800 53
+ 0 * * * * * 0 3580 0 1058
+
+R 54 * * * * * * * * 3527 * * * * 3889 805 * * 3874 * 2285 54
+ 0 * * * * * 0 3580 0 1058
+
+M 55 * * 1603 4040 * * 2972 * * 4073 3150 1839 * * * 5016 * * * * 55
+ 0 * * * * * 0 3580 0 1058
+
+T 56 3067 * * 2977 * * 3675 2715 1309 5496 5016 * * * * * 3910 * * * 56
+ 0 * * * * * 0 3580 0 1058
+
+I 57 * * 3675 * * * * 446 * 4040 * * * * * * * 2977 * * 57
+ 0 * * * * 0 * 3580 0 1058
+
+W 58 * * * * 4413 * * 4098 * 3746 * * * * * * * 4025 398 * 58
+ 0 * * * * * * 3641 0 0
+
+R 59 * * * 3746 * * * * 811 * * 3061 * 4413 2407 * * * * * 59
+ 0 * * * * * * 3641 0 0
+
+G 60 2256 * * * * 1424 * * * * * 4025 * 3746 * 1826 * * * * 60
+ 0 * * * * * * 3641 0 0
+
+L 61 * * * * * * * 1239 * 1052 * * * * * * 4413 4408 * * 61
+ 0 * * * * * * 3641 0 0
+
+Q 62 * * * * * * * 2055 4413 2185 3445 * * 1926 * * * 2861 * * 62
+ 0 * * * * * * 3641 0 0
+
+D 63 * * 1274 890 * * * * * * * 4413 * * * * * * * * 63
+ 0 * * * * * * 3641 0 0
+
+L 64 * * * * 1775 * 2789 * * 1671 5372 * * * 4413 * * * * 2490 64
+ 0 * * * * * * 3641 0 0
+
+K 65 * * 3746 * * * 3354 * 1618 * * 2747 * * 1502 * * * * * 65
+ 69 * 4413 * * * * 3641 0 0
+
+Q 66 3011 * * * * 4040 * * 5016 * * 3418 * 929 4582 4457 * * * 3675 66
+ 707 4372 1560 0 * * 0 3580 1017 1058
+
+G 67 1742 * * 3792 * 2948 * * * 4255 4422 * * 3971 * 2241 4314 3743 * * 67
+ 0 * * 2041 402 300 2414 2986 1172 1757
+
+H 68 * * 1862 * * 3331 1844 4268 3810 3206 3818 4490 * * * * * * * * 68
+ 0 * * * * * 0 3516 0 1058
+
+D 69 4490 * 1033 3908 4409 * * * * 4257 * 4062 * 2799 * 4466 4268 * * * 69
+ 0 * * * * * 0 3516 0 1058
+
+Y 70 * * * * 1916 * * 4268 * 3985 * * * * * * 2790 * * 1073 70
+ 233 * 2746 * * * 0 3516 0 1058
+
+S 71 * * * * * 1426 * * * * * 3297 * * * 1062 4403 * * * 71
+ 194 * 2991 * * 227 2778 3300 0 1336
+
+T 72 * * 2451 * 2812 3571 2796 3892 * * * * 3426 * * 2616 4665 3580 * * 72
+ 0 * * * * 0 * 3461 0 1139
+
+A 73 2302 * * * * 1832 * * * * * * 2645 * * 3416 1927 * * * 73
+ 0 * * * * * * 3410 0 0
+
+Q 74 4044 * * * * * * * * * * * 707 1613 * * * * * * 74
+ 0 * * * * * * 3410 0 0
+
+Q 75 * * * * 2220 * 2645 * * * * * * 1767 * 2031 3522 * * * 75
+ 0 * * * * * * 3410 0 0
+
+L 76 * * * * * * * 3563 * 524 2651 * * 4044 * * * * * * 76
+ 0 * * * * * * 3410 0 0
+
+L 77 * * * * * * * 2773 * 1490 * 3522 * 3416 * * * 1658 * * 77
+ 0 * * * * * * 3410 0 0
+
+R 78 * * * * * * * * * 3773 * * * 3328 274 * * * * * 78
+ 0 * * * * * * 2843 0 0
+
+S 79 * * * * * * * * * * * * * * 3391 677 1840 * * * 79
+ 0 * * * * * * 1905 0 0
+
+S 80 * * * * * * * * * * * * 3427 * * 466 2450 * * * 80
+ 0 * * 0 * * * 1905 0 0
+
+//
+�HHsearch 1.5
+NAME 13077d2b3643cabf3bccc22d84a0a439
+FAM
+FILE 13077d2b3643cabf3bccc22d84a0a439
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:03:34 2013
+LENG 199 match states, 199 columns in multiple alignment
+FILT 138 out of 1079 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
+HHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9868999989221876770999999999989999999999996664655289999999876173348999865779998999860179999999899999
+999871899999999999997477871899997299179984267899666698647987330667688764569999999999665999999998639
+>Consensus
+xxxlpxLpyxxxxLepxgiSxxxlxxHxxkhhxxyVxxlNxxxxxxxlxxxxxxxxixxxxxxxxxxxxxxxagxxxNHxxfwxxLxpxxxxxpxxxLxx
+xIxxxFGSxdxfkxxfxxxAxxxxGsGWxwLvxxxxxLxixxtxnxxxpxxxgxxPlLxiDvwEHAYyldYxnxrxxYixxxwxxxinWxxvxxrxxxx
+>13077d2b3643cabf3bccc22d84a0a439
+AFVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKVGIFNNAAQVWNHTFFWNSLKPGGGGVPTGDVAA
+RINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTLKVTKTANAENPLVHGQVPLLTIDVWEHAYYLDYQNRRPDFIDNFLNQLVNWDFVAKNLAAA
+>gi|153939066|ref|YP_001389886.1| Fe/Mn family superoxide dismutase [Clostridium botulinum F str. Langeland]gi|152934962|gb|ABS40460.1| superoxide dismutase, Mn/Fe family [Clostridium botulinum F str. Langeland]gi|295317969|gb|ADF98346.1| superoxide dismutase, Mn/Fe family [Clostridium botulinum F str. 230613]
+---IVAKKYPF-DNVKG-ISLKQLTEHYK-LYDGYVNMINKiwsiPNNSKDFKDSNATfSKLRCIK---L--GESYALDGVKLHELYFQNMT-SGHIPIN
+GPILDKILEDFNSVENFTELFKETGKS--MRGWVVLGIdpLDKKLHIFGSDSHDNGAIWLAYPLLVMDVYEHAYFMDFGTDKRKYMDAFLQ-NVNWNLIN
+NRLGM-
+>gi|121482735|gb|ABM53865.1| chromium (VI) response protein [Ochrobactrum anthropi]
+-YTMKPLSCDPSHIR--GMSERMIISHYENNYGGAVKRLNLIDEKlAELDYENAPGFlINGLK---R--EQLIATNSMILHEVFFDGLGDES--EPEERL
+KNALARDFGSYDRWRAEFIAMGKAlGGGSGWVLLSWspRDGKLVNQWAPDHCHT-LAGGTPILALDMYEHSYHIDYGAKAADYVGVFMA-AINWPSVQQL
+YDDL
+>gi|156057073|ref|XP_001594460.1| hypothetical protein SS1G_04267 [Sclerotinia sclerotiorum 1980]gi|154702053|gb|EDO01792.1| hypothetical protein SS1G_04267 [Sclerotinia sclerotiorum 1980 UF-70]
+-QKVPPLKHDFtKGIPEF-IGPQAFDLSWTAYQKLMVDKLTDATAGIPHlEGRQPKEIAIMTARDPDQAATFNYASMAFNNNFFFDCIQPNPAsePEMSE
+RLRVAIEASFSSVDSLKKEFVITASKMFGPGFVWLMKdRFDSLSLLTTYLAGSPFpgAhyrkqtkdmntEsenltdyhrqrlagppvntvgahgalsker
+kppgGieQTPILCVNTWEHVWIPDYGmgvdnvGGKKVYVENWWN-VIDWSVVADNAA--
+>gi|229008442|ref|ZP_04165897.1| Superoxide dismutase [Bacillus mycoides Rock1-4]gi|228752835|gb|EEM02408.1| Superoxide dismutase [Bacillus mycoides Rock1-4]
+-HRLPELSYDFHELAAF-ISPKESQLNYFEIHKWYVENLNKALSKyISYQQYSVTELMMKLKYLPGDLrqDVKKYGGMHFNYSVFWKVLTPNSRG-PIGT
+LKNAIRDTYRDFGVFKKEFTNIALDLNASdAWCWLLVQKGNLKIMKTYGYDCPISKDTYPVLCLKLWRVSSLFVKQKQNLKYINDFWN-FINWEEAENRY
+L--
+>gi|149241770|ref|XP_001526352.1| hypothetical protein LELG_02910 [Lodderomyces elongisporus NRRL YB-4239]gi|146450475|gb|EDK44731.1| hypothetical protein LELG_02910 [Lodderomyces elongisporus NRRL YB-4239]
+----------NADFEGL-FTHKALNELWFKQGEQLIQNLNQHIAQSaGLLehSadhePTVEELLAITTNKPHLHNVHKAAGRLYALTSFFENLRPMQTPl
+spvkierpsqealfqtptddfinQPTdPNLVAWISSSFGSVKEFRNLLINTAKAVKGDGTVWLVAqSkfshsnrpgasqqDyhhhpnhpnhhaspsfSEL
+ALVVTYNGGVVHDveragqlsrmreifkdkermakdeeevgesksekttealkskkevnelqlgsvqeaedrvafsnRKLIPALAIDASPRTYLVDYGVy
+GKQKYLENCWE-CIDWDVVMRRL---
+>gi|294948608|ref|XP_002785805.1| superoxide dismutase, putative [Perkinsus marinus ATCC 50983]gi|239899913|gb|EER17601.1| superoxide dismutase, putative [Perkinsus marinus ATCC 50983]
+-----DVPFStYANFFPL-VQPKALSYHYRSICGRDTARFNTGLRQLsLLPNlpthvrhMgfdallyfcEYENILSEEI--PLPLcdKLVYYGNSYIYHE
+IYFNCLRATGMyddfEEPlsleSSLLVQDITNAFGGMKELFEELLEAALSLDGYGWVWLLSlPEG-LSVITSQDYDGIHGDQIYAIFNIDLWEHAYIESH
+GANVEAYIKAWWG-AVDWNKLDVQY---
+>gi|238061592|ref|ZP_04606301.1| iron/manganese superoxide dismutase [Micromonospora sp. ATCC 39149]gi|237883403|gb|EEP72231.1| iron/manganese superoxide dismutase [Micromonospora sp. ATCC 39149]
+-YSLPDMPYAYGALKPA-MPGEILTLHRSKHHTAYAKGGNDALEQlAEVRDKgDFAGLVGLEK------TFAFTLSGHVPYSIFWPSG------------
+----------------------------------------------------------------------------------------------------
+-
+>gi|342180748|emb|CCC90224.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
+-------------------------------------------------------------------RAHFLASEDFCHSLVKRCTRRVACPVP-AEWKG
+IVSRQFASEAALEAELVFRAANRREAGWTWLVYdnqrpEEQRLVVVNMPGNRTPLLLGLWPLGVVDMTDKAVV---------------------------
+----
+>gi|58267144|ref|XP_570728.1| hypothetical protein CNE01360 [Cryptococcus neoformans var. neoformans JEC21]gi|57226962|gb|AAW43421.1| hypothetical protein CNE01360 [Cryptococcus neoformans var. neoformans JEC21]
+-------------------------------------------------GLDITDLLSTTAKDRSLGLAYNYGALLANNSFFLESLNAGEPIEPSKVF--
+---------TPVLEKLEGYAEGIIGGGWLWIARtGdhEAQIDIIPTFGSGTLLVSgraqrsgavfeeplasspeppvvtsdmtgpspvsaipettappsv
+asqgsnlkrGssiyPAPLAVLNLFELAWLGdKYGVwAKRQYVRDWIK-SVDWKKVEERNS--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 157 3277 * 1908 447 * * 4796 1433 0
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+
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+
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+ 16 6488 * 1000 1000 * * 6168 1000 0
+
+E 5 5235 * * 5439 * * * 5204 3507 5833 5354 * 744 6841 5074 * 3665 3886 * 6445 5
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+
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+
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+T 46 3863 * 4936 3721 6895 5435 * 4237 4089 3559 * 5664 2934 4877 6076 2814 2125 5394 * * 46
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+E 47 3507 * 3350 1878 7558 4057 * 7188 3337 6390 6688 4127 3540 3213 5738 4636 5856 6938 * 6193 47
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+L 48 4258 * * 5443 3134 6490 5788 4338 * 1149 6706 4441 6850 5960 6825 5802 5219 7273 5580 3059 48
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+A 49 2766 * 3569 2243 5611 4451 5542 * 4299 4645 * 5513 5537 3677 3507 3972 5134 5350 * 4242 49
+ 97 5331 4637 664 1438 4072 88 6780 1102 1530
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+D 50 3522 * 2494 3071 6898 3121 6438 5557 3512 6587 * 3351 * 4451 5291 3186 4686 5819 7106 5698 50
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+K 51 2558 * 5704 5230 6799 4483 5063 5998 2410 3460 3525 5802 5188 3863 3489 4792 5418 6550 * 4446 51
+ 90 4312 6623 1947 433 828 1196 6677 1391 1941
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+S 52 4369 6238 3218 3744 6594 5009 5701 6620 * 5151 * 2830 4730 5946 4542 2021 2757 6148 * 6453 52
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+ 21 6814 7449 0 * 1157 858 6843 1002 1298
+
+T 60 3845 * * 3788 5022 6229 * 2993 6158 1926 6571 7287 6308 4231 6383 3339 2967 4215 5087 7301 60
+ 161 5588 3565 2184 359 1857 466 6881 1098 1183
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+Y 61 2352 6734 4223 4355 5218 6169 4873 5232 2844 5525 7091 3495 6154 4546 6043 3244 4668 4346 * 3884 61
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+I 69 3629 * * 3892 4151 * 6670 2168 * 1950 6723 * * 6668 * 6663 4178 2263 * 6428 69
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+
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+
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+ 0 * * 1000 1000 * * 6320 1000 0
+
+A 198 2120 * 4515 3620 6178 4074 6304 6282 3063 6219 6108 3959 * 3165 3560 3594 5392 4991 * * 198
+ 32 5523 * 0 * * * 5982 1000 0
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+A 199 1130 5294 * * 4485 3214 * 2999 * 3461 5618 * * * * 5428 4029 4492 * * 199
+ 0 * * 0 * * * 5046 0 0
+
+//
+�HHsearch 1.5
+NAME 14d53a48bb3d4cf83c4f637bd86d7e3e
+FAM
+FILE 14d53a48bb3d4cf83c4f637bd86d7e3e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:04:19 2013
+LENG 70 match states, 70 columns in multiple alignment
+FILT 18 out of 20 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 2.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9877888776437887536752134443203141246657899987766589999889998866777629
+>Consensus
+GxxxsxxkxnxnssGNxGxIinNfYsnqYqnSIDlsxxxxgxxxxxxxgxxSxllgxxxsAfxxxxpLLa
+>14d53a48bb3d4cf83c4f637bd86d7e3e
+GNSTSSDKNNSSSEGNEGVIINNFYSNQYQNSIDLSANATGSDPPKTYGQFSNLLSGAVNAFSNMLPLLA
+>gi|25121875|ref|NP_740424.1| capsid protein VP4 [Theilovirus]
+GNASSSDKSNSQSSGNEGVIINNFYSNQYQNSIDLSASGGNAgDAPQNNGQLSSILGGAANAFATMAPLLM
+>gi|209363551|ref|YP_002268402.1| polyprotein [Seneca valley virus]gi|108946001|gb|ABG23522.1| polyprotein [Seneca valley virus]
+GNVQTTSKNDFDSRGNNGNMTFNYYANTYQNSVDFStsSSASGAGPGNSRG---GLAG-LLTNFSGILnPLgyLK
+>gi|239830819|ref|YP_002956075.1| polyprotein [Human cosavirus B]gi|219525340|gb|ACL15190.1| polyprotein [Human cosavirus B1]
+-MGANNSKESVNSSGNNGTTVNNFYANNYYGSIDASAQGVGTSSTPENGTVSGFLGMASSAFNAL-SLLA
+>gi|25121702|ref|NP_740361.1| VP4 [Equine rhinitis B virus 1]
+-----------NESGNNGTIVNNYYMQHYQNSVDLDGMTsqnIGGQPGSSSNPFSSIL---------------
+>gi|168480158|ref|YP_001686938.1| VP4 [Bovine rhinitis B virus]
+--------GNVNESGNSGSIINNYYMQQYQNSIDVTVGDktteggsgSGdtagsathNNTTKEdkgkDDWFSSLVSGIGSAIP-------
+>gi|82468893|gb|ABB76803.1| polyprotein [Equine rhinitis A virus]
+------TTGNQNMSGNSGSIVQNFYMQQYQNSIDADLGDnviSPegqgsntssstssSQSsgl---GGWFSSLLN--------lgtk---LLA
+>gi|130454|sp|P15072.1|POLG_FMDVT RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2Bgi|4456720|emb|CAA24960.2| unnamed protein product [Foot-and-mouth disease virus C1]
+GAGQSsPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDnaiSGgsnegstdttsthTTNTQNNDWFSKLAS---SAFSGLFgALLA
+>gi|254547216|gb|ACT66682.1| polyprotein [Porcine teschovirus 5]
+GTGSSRMEnGNTNNSGNTGVINYNFYSNSYTDAIDLSGAMSTQESNAAENAASgpsSLLKAGINAAARIGPLLA
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 2406 0 0
+
+N 2 2971 * * * * * * * * * 1905 1116 * * * * 2794 * * * 2
+ 0 * * * * * * 2728 0 0
+
+S 3 3988 * * * * 892 * * * * * * * * * 1892 * 2956 * * 3
+ 0 * * * * * * 2728 0 0
+
+T 4 1905 * * * * * * * * * * 3731 * 1964 * 2271 2366 * * * 4
+ 0 * * * * * * 2728 0 0
+
+S 5 * * * * * * * * * * * 1905 * * * 727 2956 * * * 5
+ 197 2971 * 0 * * * 2728 1039 0
+
+S 6 * * * * * * * * * * * 1905 2971 * 2794 1589 2956 * * * 6
+ 0 * * * * * * 2728 0 0
+
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+
+K 8 * * * 2898 * * * * 529 * * * * * * * 2532 * * * 8
+ 208 2898 * 0 * * * 2782 1068 0
+
+N 9 * * * 2033 * 1490 * * * * * 1763 * * * 3251 * * * * 9
+ 0 * * * * * * 2803 0 0
+
+N 10 * * 3173 * * * * * * * * 836 * * * 1604 * * * * 10
+ 0 * * * * * * 2803 0 0
+
+S 11 * * * * 3173 * * * * * * * * 2725 * 1792 2972 1636 * * 11
+ 0 * * * * * * 2803 0 0
+
+S 12 * * 3457 * * * * * * * * 950 * 2812 * 2007 * * * * 12
+ 0 * * * * * * 2859 0 0
+
+S 13 * * * 2256 * * * * * * 4138 2771 * 3761 * 961 * * * * 13
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+
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+ 224 2796 * 1000 1000 * * 2846 1207 0
+
+A 37 1125 * * * * 1977 * * * 2937 * * * * * 3477 * 3900 * * 37
+ 105 3834 * 0 * * * 2846 1002 0
+
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+ 678 1414 * 1984 420 * * 2846 1548 0
+
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+
+G 41 * * * * * 582 * * * * * 2393 4029 * * * 3638 * * * 41
+ 488 1800 * 3104 178 0 * 2825 1417 1000
+
+S 42 2346 * * * * 2150 * * 4205 * * 3900 * 3710 * 2269 2532 * * * 42
+ 54 4765 * 0 * * * 2846 1000 0
+
+D 43 3834 * 1712 2450 * 3477 * * * * * 3900 * 3160 * 3334 3761 * * * 43
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+
+P 44 3012 * * 3834 * 4675 * * * * * 2966 1999 * * 2415 2314 * * * 44
+ 84 4138 * 1585 585 * * 2846 1003 0
+
+P 45 * * * * * 2247 * * * * * 2689 1880 * * 4162 1705 * * * 45
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+
+K 46 1957 * * * * * * * 2223 * * 3425 2731 2662 3920 4049 * * * * 46
+ 0 * * * * * 0 2822 0 1003
+
+T 47 2689 * * 1890 * 4130 * * * 3920 * 3046 4162 * * 2703 3041 * * * 47
+ 110 3762 * 2000 415 0 * 2822 1018 1003
+
+Y 48 * * 3900 3114 * 4138 * * * * * 1583 * 4205 2701 2998 4254 * * 4598 48
+ 0 * * * * * * 2846 0 0
+
+G 49 * * 2829 * * 710 * * * * * 2443 * * * 3966 * * * * 49
+ 136 * 3477 * * * * 2846 0 0
+
+Q 50 3624 * * * * * * 3831 * * * 4359 2351 2157 * * 2621 * 2203 * 50
+ 0 * * * * * 0 2705 0 1095
+
+F 51 3624 * * * 1141 * * * * 2488 * * * * * * 3715 2243 * * 51
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+
+S 52 * * * 3831 * * * * * * 4114 * * * * 198 * * * * 52
+ 122 3624 * 1585 585 0 * 2705 1068 1095
+
+N 53 * * * * * 1846 * * 3761 3834 * 2561 * * * 1292 * * * * 53
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+L 54 * * * * 2733 * * 1731 * 867 * * * * * * * * * * 54
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+
+L 55 2557 * * * * * * * * 523 * * * * * 3932 * 3863 * * 55
+ 0 * * * * * * 2790 0 0
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+S 56 * * * * * 756 * * 2972 * * 3910 * * * 2224 * * * * 56
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+
+G 57 2515 * * * * 1375 * * * 2598 3495 * * * * 2430 * * * * 57
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+
+A 58 893 * * * 3819 2739 * 3215 * 2909 * * * * * * * * * * 58
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+
+V 59 1538 * * * * 3215 * 2739 * 2909 * * * * * 2920 * 2911 * * 59
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+N 60 * * 3846 * * * * * * * * 1427 * * * 1188 3060 * * * 60
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+A 61 184 * * * * * * * * * * 3060 * * * * * * * * 61
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+
+F 62 2883 * * * 355 * * 3596 * * * * * * * * * * * * 62
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+
+S 63 2004 * * * * * * * 3846 * * 2410 3596 * * 1534 3945 * * * 63
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+
+N 64 2336 * * * * 1964 * * * * * 2270 * * 2794 3857 3000 * * * 64
+ 0 * * 2000 415 * 0 2728 1003 1003
+
+M 65 2848 * * * * * * 1521 * 1968 1960 * * * * * * * * * 65
+ 317 * 2342 * * * 0 2728 0 1003
+
+L 66 2087 * * * 2743 1669 * * * 1733 * * * * * * * * * * 66
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+
+P 67 2347 * * * 3839 * * * * * * * 724 * * 2964 * * * * 67
+ 0 * * * * 0 * 2728 0 1003
+
+L 68 * * * * * * * * * 0 * * * * * * * * * * 68
+ 192 3007 * 1000 1000 * * 2782 1095 0
+
+L 69 3904 * * * * * * * * 100 * * * * * * * * * * 69
+ 0 * * * * * * 2782 0 0
+
+A 70 574 * * * * * * * 2949 4026 2865 * * * * * * * * * 70
+ 0 * * 0 * * * 2773 0 0
+
+//
+�HHsearch 1.5
+NAME 17059f2501ae2a72fc19097f4d2b1341
+FAM
+FILE 17059f2501ae2a72fc19097f4d2b1341
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:45:08 2013
+LENG 86 match states, 86 columns in multiple alignment
+FILT 103 out of 186 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCC
+>ss_conf PSIPRED confidence values
+98777888886066889999999999998398978981899998999999999999199300164799858999978987665679
+>Consensus
+xxxxxxxxxxxxxxexxxxxlxxxlxxFxxxxxxxlxFpxslsxxeRxxVHxlAxxxGLxsxSxGxgxxRxlvVxkxxxxxxxxxx
+>17059f2501ae2a72fc19097f4d2b1341
+MGSLNGGSPEGVESQDGVDHFRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRAGSHHHHHH
+>gi|301116633|ref|XP_002906045.1| DNA polymerase alpha-associated DNA helicase A, putative [Phytophthora infestans T30-4]gi|262109345|gb|EEY67397.1| DNA polymerase alpha-associated DNA helicase A, putative [Phytophthora infestans T30-4]
+--KTASNDEKPEAAEATAIEPAVAVQE--EEEEEEIE-------DKAVATKSVFQMMVFDSDSSDDDNDEAVDVEV----------
+>gi|294877934|ref|XP_002768200.1| DNA-binding protein SMUBP-2, putative [Perkinsus marinus ATCC 50983]gi|239870397|gb|EER00918.1| DNA-binding protein SMUBP-2, putative [Perkinsus marinus ATCC 50983]
+--TTEIGEK-pVARVDLT---ieav-DAT---ldsL---aSEETYCFDNLLSAASRRLVHERAETRGFKHGSSGDGIMRYVWVR-----------
+>gi|321472095|gb|EFX83066.1| hypothetical protein DAPPUDRAFT_316187 [Daphnia pulex]
+------DDSSGSEPDDDIDDFRELLMEWVGGEEDIFTFPDTFSLAERRQIHNICDQLKLVHKSTGEGDSRRLVVTR----------
+>gi|332017832|gb|EGI58492.1| NF-kappa-B-repressing factor [Acromyrmex echinatior]
+---------------EIKTKCRKLFKDLLQTDnySRkDIVF-LDFPKEDRIVIHQVARTMGLKSRSQGK-DQRKLIVSSK---------
+>gi|170033973|ref|XP_001844850.1| ATP-dependent RNA helicase A [Culex quinquefasciatus]gi|167875095|gb|EDS38478.1| ATP-dependent RNA helicase A [Culex quinquefasciatus]
+-------------EEDVRIAIHYMIDKFVQDEKlNEFDFPVSFTREHRAYIHDYVKNKSLKSRSHGKGNQRYLTIYK----------
+>gi|110741780|dbj|BAE98834.1| hypothetical protein [Arabidopsis thaliana]
+--------GKPTSVEATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKMGIQSKSSGRGEQRRLSIFK----------
+>gi|302404235|ref|XP_002999955.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]gi|261361137|gb|EEY23565.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
+---------------MGIEQIAQELENFLKNSQASLALPPM-DNHARKVLHELANKFNIKSKSTGSGDQRRPTLYRT---------
+>gi|330470828|ref|YP_004408571.1| single-stranded nucleic acid binding R3H domain-containing protein [Verrucosispora maris AB-18-032]gi|328813799|gb|AEB47971.1| single-stranded nucleic acid binding R3H domain-containing protein [Verrucosispora maris AB-18-032]
+-----------------RKELAAVARNAVEkvkEHGEAVRLE-PMSAFERKCVHDVVNAiDGVESESEGVEPNRRIVVRPA---------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+G 2 * * * * * 0 * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+S 3 3654 * 3636 3563 * * * * 1668 * * 3890 * * 4016 2194 3427 * * * 3
+ 0 * * * * * * 3920 0 0
+
+L 4 3709 * 3680 * * * 2735 * * 2193 * * * * * * 1332 3654 * * 4
+ 0 * * * * * * 3920 0 0
+
+N 5 2832 * 3680 2493 * 3654 3842 * * * * 3789 * 3376 * 2855 * 2758 * * 5
+ 92 * 4016 * * * * 3920 0 0
+
+G 6 * * * * * 3714 * 3355 3591 3550 * 3530 3695 * 2697 2772 3267 3483 * * 6
+ 0 * * * * * 0 3856 0 1000
+
+G 7 * * 2401 2658 * 2694 * 3943 3853 * * 2224 3779 * 3706 * * * * * 7
+ 0 * * * * * 0 4083 0 1000
+
+S 8 * * 2081 3515 * 3779 * * 2701 * * 3640 2639 * * 2799 3943 * * * 8
+ 0 * * * * * 0 4083 0 1000
+
+P 9 * * * 1906 * 2673 * * 2803 3953 * * 2769 3851 * 3426 4072 * * * 9
+ 118 * 3670 * * * 0 4114 0 1000
+
+E 10 4113 * 2928 1239 * * * * 2146 * * * * 3932 * 3388 * * * * 10
+ 444 3918 2330 0 * 431 1953 4013 1135 1083
+
+G 11 3902 * 3555 * * 1839 3983 * * * * * 2290 * 3630 3985 3525 3839 * * 11
+ 0 * * * * * 0 4091 0 1199
+
+V 12 3048 * 4357 2169 * 4102 * * * * * 4488 2463 * * 3077 2647 4453 * * 12
+ 0 * * * * 212 2871 4539 0 1199
+
+E 13 2956 * 4880 1272 4377 4834 * * 4742 * * * * 4857 4562 4656 * 2427 * * 13
+ 0 * * * * * 0 4867 0 1000
+
+S 14 2260 * * 3551 4569 4492 * * 3246 * * * 3535 * 3829 3294 2706 3293 * * 14
+ 0 * * * * * 0 5049 0 1000
+
+Q 15 * * 2288 1396 * * 5162 * 2819 * * * * 2899 4245 * * 4089 * * 15
+ 0 * * * * * 0 5169 0 1000
+
+D 16 2793 * 2367 2635 5220 3702 * 4865 4547 3453 4391 5665 * 5552 * 3641 * 4804 5366 * 16
+ 0 * * * * * 0 5460 0 1000
+
+G 17 4359 * 3426 4118 3896 4837 * 4517 4920 3362 4930 3781 * 5193 5963 3559 1996 5450 * 5860 17
+ 32 * 5532 * * * 0 5610 0 1000
+
+V 18 3050 * 5690 4673 * * * 3993 2276 3525 * 4956 5555 4935 1921 * 3299 6293 * * 18
+ 0 * * * * * 0 5920 0 1083
+
+D 19 3383 6398 3029 3011 * 6270 * 2533 2961 3201 6205 5528 * 5175 4131 6297 4158 4878 * * 19
+ 0 * * * * * 0 5958 0 1083
+
+H 20 3377 * 3029 1815 * 4690 5075 * 3106 5180 * 4921 * 4189 4263 3402 5199 * 6554 6322 20
+ 0 * * 2000 415 1953 431 5968 1049 1083
+
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+
+R 22 3281 * 3768 4061 6243 6084 4197 6443 3723 4731 5557 4933 * 4822 2387 4815 4127 5555 5119 2910 22
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+
+A 23 2918 6207 4782 2703 * 6460 6312 5443 2854 4701 6557 4250 * 3239 4827 3522 3768 3998 * 6249 23
+ 0 * * * * * * 5942 0 0
+
+M 24 2930 * * 3230 * * 6580 2952 4630 2749 3647 * * 3179 4227 4659 5416 3144 * 6195 24
+ 21 * 6108 * * * * 5942 0 0
+
+I 25 3646 * * * 4764 5216 * 2373 * 1242 5032 * * * * * * 2251 * * 25
+ 0 * * * * * 0 5882 0 1049
+
+V 26 5868 * 4362 2542 * * 6494 * 2573 3105 4357 5032 6671 2741 3376 * 3997 4090 * 6546 26
+ 0 * * * * * 0 5882 0 1049
+
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+ 78 * 4252 1585 585 0 * 5886 1049 1049
+
+F 28 3535 5247 * * 675 5648 * * * 3991 * 6072 * * * * 5363 * 4461 3415 28
+ 53 * 4784 * * * 0 5713 0 1154
+
+M 29 3130 5264 * * * * 5370 2441 2839 2478 5645 * * 6106 3406 4624 6702 2706 * * 29
+ 89 4065 * 0 * 913 1092 5659 1253 1329
+
+A 30 2489 * 2928 2105 6856 4834 5672 * 3556 5050 * 3639 * 3900 5056 3583 * * 6653 6817 30
+ 368 2152 * 1900 450 1997 416 5856 1779 1130
+
+S 31 3790 * 2051 2781 * 3185 5776 * * * * 5663 4854 5172 5453 2006 4086 * * * 31
+ 79 4231 * 428 1960 459 1876 5893 1269 1086
+
+K 32 * * 2488 2014 * 3557 5528 * 5196 6496 * 6052 3410 * 5012 2502 3602 5048 * * 32
+ 35 5377 * 3001 192 * 0 5859 1047 1000
+
+K 33 4555 6669 4210 2435 * 3599 6727 * 3348 6512 4075 3212 * 3625 3649 3687 3830 4987 * * 33
+ 60 4615 * 2010 412 * 0 5862 1114 1000
+
+M 34 3262 6448 3572 2618 * 6363 6669 6796 3980 5280 5858 4340 6032 4376 2894 4360 2806 4916 5689 6871 34
+ 457 1880 * 426 1966 0 * 5862 1993 1000
+
+Q 35 4007 * 2954 1749 * * * 4345 6363 6868 * * 4799 4073 4045 3373 3641 3202 * * 35
+ 16 6489 * 0 * * * 5723 1009 0
+
+L 36 6216 * * * 4681 * 6847 2917 5513 1442 3070 * * * 6653 * 6442 2710 * 3021 36
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+
+E 37 2980 6198 4759 2025 * * 4268 5072 5774 * * 6669 * 5092 4409 3354 2921 2635 * * 37
+ 78 * 4245 * * * * 5695 0 0
+
+F 38 * 5962 * * 444 * * * * 2128 5641 * * * * * * * * * 38
+ 32 * 5511 * * * 0 5506 0 1154
+
+P 39 4813 * 4672 3565 * * 6634 * 5605 5272 * * 802 6406 5448 2507 * * * * 39
+ 282 * 2492 * * 1779 497 5404 0 1236
+
+P 40 2716 * 6485 * * * 5665 * 4882 5360 * 3644 1490 * 4691 2073 5596 5291 * * 40
+ 73 * 4345 * * 402 2040 5118 0 1757
+
+S 41 6580 * 3726 3855 * 4294 4948 6120 * 6119 6066 4023 2986 6416 * 1633 2351 * * * 41
+ 31 * 5570 * * 1288 760 5491 0 1292
+
+L 42 * * * * 2375 * * 4631 * 916 2410 * * * * * 6702 5499 * 5872 42
+ 0 * * * * 2812 222 5425 0 1229
+
+N 43 4659 4634 3379 * 6531 6499 * * * 6414 * 3048 6444 * * 1545 1665 * * * 43
+ 0 * * * * * 0 5430 0 1190
+
+S 44 2062 * * * * 4665 * * 2893 5020 * 2762 2657 * 6342 2138 6602 * * * 44
+ 0 * * * * 239 2710 5430 0 1190
+
+H 45 3162 * 3225 2638 2999 * 3425 7201 6698 5280 * 4216 6723 5649 3742 4880 4849 5299 * 3208 45
+ 0 * * * * * 0 5636 0 1000
+
+D 46 5139 * 2690 1103 6633 * 5064 * 3650 * * * * 2427 * 4755 6883 * * * 46
+ 0 * * * * * 0 5636 0 1000
+
+R 47 4165 * * * * * * * * * * * * * 83 * * * * * 47
+ 0 * * * * * 0 5636 0 1000
+
+L 48 1897 * * * * 5921 5267 6520 1944 3495 4546 * * 6608 2332 6606 * 4165 6400 * 48
+ 0 * * * * * 0 5636 0 1000
+
+R 49 3036 5624 7012 5796 4348 * * 3502 4835 2371 6102 * * 3933 5928 5795 4303 2572 6029 3086 49
+ 0 * * * * * 0 5636 0 1000
+
+V 50 5462 * * * 5739 * * 1394 * 3269 * * * * * * 4189 1307 6029 * 50
+ 0 * * * * * 0 5636 0 1000
+
+H 51 * * * * * * 81 * 4189 * * * * * * * * * * * 51
+ 0 * * 3322 152 0 * 5636 1000 1000
+
+Q 52 3969 * 3010 2426 * 4575 6582 4830 5976 4783 6504 3798 * 2778 3691 3494 3980 5168 * * 52
+ 0 * * * * * * 5635 0 0
+
+I 53 4256 6454 * 5470 5201 * * 2353 6578 1739 3335 * * * 4896 6673 5333 2708 5593 4654 53
+ 0 * * * * * * 5635 0 0
+
+A 54 716 2708 * * 4190 * * 5616 * * * * * * * 3996 * 3315 * * 54
+ 0 * * * * * * 5635 0 0
+
+E 55 3285 * 3986 1992 * 5618 3518 6899 3155 5809 5359 3926 6582 2825 3954 5494 6906 * * * 55
+ 0 * * * * * * 5635 0 0
+
+E 56 3629 * 4164 2681 * * 5716 6052 1937 * 3947 3859 6482 4337 3447 4189 4294 * 5615 * 56
+ 45 5015 * 0 * * * 5635 1078 0
+
+H 57 4139 5904 6694 5555 2842 * 3993 6159 6406 1813 2373 5197 * * 4236 * * * 6403 3353 57
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+
+G 58 6816 * 5123 * * 585 6908 * 3733 6639 * 4310 * * 6033 4109 5389 4190 * * 58
+ 0 * * * * * * 5635 0 0
+
+L 59 * 5794 * * 2909 * * 4322 * 527 5136 * * * * * * 4169 * 5591 59
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+
+R 60 4669 * 3593 3575 5164 4342 3895 4321 2068 * 6396 5234 6958 4677 4439 3583 4369 3694 * 5630 60
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+
+H 61 * * * * * * 1170 * * * * * * 5284 * 1012 4877 * * * 61
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+
+D 62 4026 6449 3810 2818 6492 5325 4734 6269 1741 7233 * 6672 * 3845 3882 4065 4976 3982 * 5670 62
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+
+S 63 * * * * * * * * * * * * * * * 0 * * * * 63
+ 0 * * * * * 0 5645 0 1004
+
+S 64 4416 * 6724 3412 5759 * 3567 4497 5460 5264 6641 * * 3694 3678 2542 3183 3292 * 3257 64
+ 0 * * * * 0 * 5645 0 1004
+
+G 65 * * 3941 * * 151 * * * * * * * * 6604 * * 5389 * * 65
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+
+E 66 5244 6786 2954 1848 * 6272 6564 * 2162 5749 6633 6541 5968 5692 4944 3797 4848 3644 6465 7456 66
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+
+G 67 5134 * 3120 3597 * 704 * * 4468 * * 5096 5525 6251 5904 5491 6397 * * * 67
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+
+K 68 3481 * 2287 2787 * 4681 4651 6184 4744 6449 * 3145 2825 6844 4542 3695 4784 * * * 68
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+
+R 69 4765 * 2456 2927 6486 4690 5639 6495 4651 4857 5333 2681 * 2924 4039 3175 6615 * * * 69
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+
+R 70 * * * 4189 * * * * * * * * * * 81 * * * * * 70
+ 0 * * * * * * 5633 0 0
+
+F 71 4051 5785 6959 * 3431 * 2905 * 4024 * * 6869 * 3600 2339 4455 5207 3953 * 2323 71
+ 0 * * * * * * 5633 0 0
+
+I 72 5670 * * * * * * 1971 * 1392 * * 4435 * * * 6062 1822 * * 72
+ 0 * * * * * * 5633 0 0
+
+T 73 5974 5752 4189 5808 * * 4453 3345 5283 5206 5646 * * 5115 6642 4415 2080 1556 6184 * 73
+ 0 * * * * * * 5633 0 0
+
+V 74 * * * * * * * 2000 * 2625 * * * * * * * 766 * * 74
+ 27 * 5745 * * * * 5633 0 0
+
+S 75 6782 * * 3825 3942 4384 5686 5656 3677 4705 * * * 6496 3592 2050 2494 5590 5394 3409 75
+ 0 * * * * 0 * 5623 0 1030
+
+K 76 * * 5922 * 6325 6669 6233 * 1106 * * 4746 4118 6474 1942 4957 5979 3859 * * 76
+ 27 5734 * 0 * * * 5608 1000 0
+
+R 77 2873 5671 4515 4405 * 4475 * 4294 1494 4503 * * 4258 * 3035 4678 4492 * * * 77
+ 0 * * * * * * 5278 0 0
+
+A 78 2423 * 2607 2697 * 2589 * * 1604 * * * * * * * * * * * 78
+ 0 * * * * * * 2558 0 0
+
+G 79 * * * * * 0 * * * * * * * * * * * * * * 79
+ 0 * * * * * * 1000 0 0
+
+S 80 * * * * * * * * * * * * * * * 0 * * * * 80
+ 0 * * * * * * 1000 0 0
+
+H 81 * * * * * * 0 * * * * * * * * * * * * * 81
+ 0 * * * * * * 1000 0 0
+
+H 82 * * * * * * 0 * * * * * * * * * * * * * 82
+ 0 * * * * * * 1000 0 0
+
+H 83 * * * * * * 0 * * * * * * * * * * * * * 83
+ 0 * * * * * * 1000 0 0
+
+H 84 * * * * * * 0 * * * * * * * * * * * * * 84
+ 0 * * * * * * 1000 0 0
+
+H 85 * * * * * * 0 * * * * * * * * * * * * * 85
+ 0 * * * * * * 1000 0 0
+
+H 86 * * * * * * 0 * * * * * * * * * * * * * 86
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 19505167af9ebfb7eba762c056361c1f
+FAM
+FILE 19505167af9ebfb7eba762c056361c1f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:31:27 2013
+LENG 240 match states, 240 columns in multiple alignment
+FILT 126 out of 1228 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEECCCCCCCEEEEEEEECCCCCCEEEEEEEECCCEEEECHHHCCCCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEC
+CCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCEE
+EEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9999899987889899999916997746999999719999989889688875599981100356888607999999998998777777667768999957
+8753677644155265455557998899998366578887775568999998568993014331677886769861589966567787980799989989
+9999998657778888898559999799799999998539
+>Consensus
+ixxgxxxxxxxxPxxvxixxxxxxxxxxxCxGtlIsxxxVLTaaxCxxxxxxxxvxxgxxxxxxxxxxxxxxxvxxxxxhpxxxxxxxxxxxDiAlxxLx
+xxxxxxxxvxpiclxxxxxxxxxxxxxxxxgxgxxxxxxxxxxxlxxxxxxxxxxxxCxxxxxxxxxxxxxxxCxxxxxxxxxcxgdsGxplxxxxxxxx
+xlvGixsxxxxxxcxxxxxxxxxxxvxxxxxWIxxxxxxx
+>19505167af9ebfb7eba762c056361c1f
+VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLA
+QSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQY
+AVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN
+>gi|74002660|ref|XP_535739.2| PREDICTED: similar to sperm-specific sodium proton exchanger [Canis familiaris]
+----------------------------------------------------------------------------------------------------
+--------YALLRVPSSPRHSSSPEDAYELIIPRRVFSYsLQQPHPPTPHLENRVSY-------------------------------------------
+-----------------------------------------
+>gi|334329721|ref|XP_001365700.2| PREDICTED: sodium/hydrogen exchanger 10-like [Monodelphis domestica]
+----------------------------------------------------------------------------------------------------
+------------NVVPkhmtkqladrc------------------ETEYAv-----------------VRvpsspQPSYSFQDEEYELIMPITHTHYPSH
+LNWMNSGNLNR----------------------------------------------
+>gi|328704879|ref|XP_003242629.1| PREDICTED: hypothetical protein LOC100575281 [Acyrthosiphon pisum]
+----------EYPYLVGLTIGgivdKTNRKTAICTGTLVSPVLVLSSAYCTlllmtTINESPEVTTLFAYWKTPTNSVKYHRATSVYTHPSYD--KATRM
+FDLSLIKLKKPFKHVE--RFVRLSSKTLSSDVELSCVVVGIGAPHERGyKVPVRVKYGRTACRIPKSNPGLEYLIGYTWADFLCSETvGPTTTRLPCDRA
+DPLVC--SGSRHQYGIFSYGydgtgaspatEATECGDPAIQGRHLFINRNAGWIAEIIANH
+>gi|329669138|gb|AEB96457.1| salivary serine protease [Simulium guianense]
+-------DNEQFPWFCTVY--SNEDFKPVCYCTILGKNAILTASKCFENrdttngdHPKYHVRFGSIAAN---GMRKLVNIEKIQGTQ-----------H
+LLMLKPKTPIE---GYHAIELAENNYVEPKNGNITVATFHSYGTKLSMKTHVHMVDMRLSkDAKNC--QFAY----PNKHFCA--AESQNRCNIGLGTAA
+VSQSpknSSRWILHGIVDQ-SPKCNGESKNADLFVKIDAeRWDFIKHNLN--
+>gi|194899249|ref|XP_001979173.1| GG13986 [Drosophila erecta]gi|190650876|gb|EDV48131.1| GG13986 [Drosophila erecta]
+--------------------RGhKPEFSVVCNATIVSPYILVTTERCFSEssiksvpstePVLYTVAEGKiygNSFLAHEPHPYKLHNVSHIVYARYL--
+----DKgivgTLVLVHLVQPLEFHMKLRPVCLTEELTDNWLtagDFTGVNPGHPIIDdRRQPGRYELREV------------------------------
+--------------------------------------------------------------
+>gi|86146281|ref|ZP_01064606.1| hypothetical protein MED222_16256 [Vibrio sp. MED222]gi|218709799|ref|YP_002417420.1| hypothetical protein VS_1811 [Vibrio splendidus LGP32]gi|85835992|gb|EAQ54125.1| hypothetical protein MED222_16256 [Vibrio sp. MED222]gi|218322818|emb|CAV18995.1| hypothetical protein VS_1811 [Vibrio splendidus LGP32]
+------------------------------SATLIDPYWVITANHVSGSKSegyENAVTCSSYEKDKNGKYNVVHTSRATTDPDgewgEYE--FTDGIYD
+FALVRLDTPIT---GIKPAKLPEKGMFDHSEVyEVNSVGFGNYNGRNGGKKFVKYNDTDK--------KWLAEYKYDPVIMPQSNL-QWLIIHGDSGSGI
+TIERDGEFYIIGEIGL---QYYGELGWQDTFDDVLGRLDSLQSDMQE-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+//
+�HHsearch 1.5
+NAME 1b2f6c29a7ee470020810a8013596703
+FAM
+FILE 1b2f6c29a7ee470020810a8013596703
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:47:25 2013
+LENG 214 match states, 214 columns in multiple alignment
+FILT 126 out of 1562 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
+HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
+HHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9899988999999999999999844159638997157777532169999998424344456678999999987899999999998469989995873057
+9988752133445656999999999875068877699997999999999983566553220102223299999999999999975467998999599999
+99999999997369
+>Consensus
+xxIxixGxxGsGKtTxxxxLxxxlxxxxxxvxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxixxxxxxxxxvixDrxxxxx
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxdxivxLxxxxexxxxRlxxRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxidxxxxx
+xevxxxIxxxlxxx
+>1b2f6c29a7ee470020810a8013596703
+MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASN
+AAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDP
+GRLAATLAPPDVPS
+>gi|21668336|emb|CAC84481.1| thymidine kinase [Heliothis virescens ascovirus 3c]
+-YVSVEGNIGSGKSSVMRSVAKHFDDCI---LFCEEPVND--W--GLLEYMYRDPT-KY-AFAFEVQVLTSkYH------KWINALDEcrrtqKRIVVME
+RsplsayKVFTRMMRERGTISSQQYHIYTQMFAEFQPQ---LKTIDHIVHIDTRASTCQVRAGERNRKAE-E-----ALSLEYLLDVESYTNNYVRDH--
+SSVYTIDGDRSREHVAGELTAFLS--
+>gi|342733037|ref|YP_004771876.1| adenylate kinase [Candidatus Arthromitus sp. SFB-mouse-Japan]gi|342330492|dbj|BAK57134.1| adenylate kinase [Candidatus Arthromitus sp. SFB-mouse-Japan]
+-RILLIGPPGVGKGTQANLICSKYN---LKHISTgdilRkYISDDSEI-GKRISNYgIDC--GKFVSDDLVNSIV------------SQLKSDKildQSY
+LLDGYPRTVS--QAEF--------YINNILNK------N-EKYLVIYLSTSNEYILNRISNRLtciNCGNIynlQNdlpkiygkcdicgn-RLIIRSDDK
+VNILkerLEIYYRITsrvvDYFRNlDVLYEIDASYGINEIFSQVKKVIG--
+>gi|297182654|gb|ADI18812.1| shikimate kinase [uncultured SAR11 cluster bacterium HF4000_37C10]
+-------MMAVGKTTLGKIVAKKQELK---FIDIDAsIEK--KN-SMTIREIFKK---------KGEKFF-----RMEeENEILKSLEKNNCVIA-----
+-----LGGGAF-----MNKTVRENILK-------NAISIWLNVDIKTLNQRVKWNQK----RP--LLK-EEN-YqKKITKLYAERKNIY-KLANHQIAcD
+KLSKDNIAEKIIAL----
+>gi|26346689|dbj|BAC36993.1| unnamed protein product [Mus musculus]
+----------------------------FGTTvpfTSRKPRED-EKDGQ-AYKFVSRSEmEADIkAGKYLEHGEYEGNLYGTkIDSILEVVQTGRTCILD
+--------------------VNPQALKVLRTS---EFMPYVVFIAAPELETLRamhKAVVDAGITT----------KLLTDSDLkktvdESARIQRAYNH
+Y-FDLIIVNDN--LDKAFEKLQTAI---
+>gi|212703228|ref|ZP_03311356.1| hypothetical protein DESPIG_01270 [Desulfovibrio piger ATCC 29098]gi|212673494|gb|EEB33977.1| hypothetical protein DESPIG_01270 [Desulfovibrio piger ATCC 29098]
+-LITVAGLVGSGRGAIINLLSEWMDSKHVQNHVFWLVTDE-----EKARPWPWRF---W-------------------RQ-LP--AAGQTAVFYDGWYGE
+AMRQRCckDVGENEFTASMHRWQALESGLAESGMAIIKLWLHLNKKDHARALKE----------------------------------------------
+----------------
+>gi|78778435|ref|YP_396547.1| dephospho-CoA kinase [Prochlorococcus marinus str. MIT 9312]gi|109824304|sp|Q31DD4.1|COAE_PROM9 RecName: Full=Dephospho-CoA kinase; AltName: Full=Dephosphocoenzyme A kinasegi|78711934|gb|ABB49111.1| dephospho-CoA kinase [Prochlorococcus marinus str. MIT 9312]
+----------------------------------------------------------------------------------------------------
+-------------------------------ICTEIWLVKCPRELQKKRLITRDKISE----------KEAYETINLQLSF-EEKSK-FSDIILDNSDDQ
+NKWINTIREIL---
+>gi|189183429|ref|YP_001937214.1| hypothetical protein OTT_0522 [Orientia tsutsugamushi str. Ikeda]gi|189180200|dbj|BAG39980.1| hypothetical protein OTT_0522 [Orientia tsutsugamushi str. Ikeda]
+---------------MILALE----KLVYVV--ILKSATD-VI-AES-QAK---gDMRPWE-Q--pDfVDKIVLTQKLRQ----MNA--VCEVQFYDRSP
+FCAYALWHY-------------------------------------------------------------------------------------------
+-----------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 32 5522 * 2034 404 * * 8180 1182 0
+
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+ 0 * * * * * * 9965 0 0
+
+I 3 5344 6724 * * 4863 * * 875 * 3289 * * * * * * 6874 2183 5174 5176 3
+ 0 * * * * * * 10190 0 0
+
+A 4 2553 3802 7212 * 4774 4675 6993 3035 * 3370 5434 * * 5074 7302 4143 4775 1961 4994 6918 4
+ 0 * * * * * * 10190 0 0
+
+I 5 * * * * 3212 * * 1734 * 1524 5074 * * * * * 5307 2405 * * 5
+ 0 * * * * * * 10190 0 0
+
+E 6 4257 3644 3720 2532 5194 5055 6696 3380 6548 3219 6470 4473 * 5484 * 3618 3835 3349 * 6723 6
+ 0 * * * * * * 10190 0 0
+
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+ 0 * * * * * * 10190 0 0
+
+V 8 3332 4063 5471 * 4899 5078 * 3675 * 3134 4200 4000 2222 6815 6193 5004 4277 3304 6023 6674 8
+ 0 * * * * * * 10190 0 0
+
+D 9 4898 * 2320 4835 5967 * 4789 3380 4245 6344 4825 4664 2110 * 6023 2879 4407 6256 * * 9
+ 0 * * * * * * 10190 0 0
+
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+ 0 * * * * * * 10190 0 0
+
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+ 0 * * * * * * 10190 0 0
+
+G 12 * * 6610 6164 * 58 * * * * * * * * 6023 * * * * * 12
+ 0 * * * * * * 10190 0 0
+
+K 13 * * * * * * * * 87 * * * * 6012 6023 6638 5837 * * * 13
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+
+R 14 * * 4889 6386 * 3770 * * * 6751 6699 * 6248 6033 5648 1377 1223 * * * 14
+ 0 * * * * * * 10192 0 0
+
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+L 16 3753 5751 * * 3775 6747 6758 3375 6045 1457 6110 6396 * 3878 6661 6507 4590 2533 * 6600 16
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 139 3740 5873 570 1615 296 2429 9876 2020 4317
+
+T 33 4277 5825 4249 5255 4289 4664 3838 3279 5610 2555 5446 7198 6343 * 4604 4042 3782 3537 4484 4311 33
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+
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+
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+
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+
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+
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+ 142 * 3413 * * 2191 357 10054 0 3676
+
+Y 39 4924 6547 3627 4539 4049 2741 5156 4514 4738 3959 * 4230 4070 * 4686 3563 4528 4036 6435 3372 39
+ 61 * 4584 * * 2304 326 10064 0 4373
+
+G 40 5597 5262 2071 3844 6338 3752 4760 5420 4119 4342 * 6465 * 5544 3399 2998 3940 3932 * 6873 40
+ 1798 4702 569 1431 669 2799 224 10048 1384 4312
+
+Q 41 3323 * 4878 3436 * 4759 3894 3218 3849 * * 3018 3894 4835 4904 2802 3472 * * * 41
+ 264 3579 3582 1249 787 922 1082 7797 1385 8820
+
+S 42 3756 4927 3581 3110 5542 6245 5157 6356 4162 3826 6028 4680 2579 5085 3743 3743 5085 4000 * * 42
+ 0 * * * * 1931 439 9671 0 6286
+
+V 43 4317 * 5040 6538 2481 * * 2965 5297 2020 5360 6128 7317 4310 6595 * 4789 3668 4727 3812 43
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+
+A 44 3029 * * 4140 4456 4752 3306 * 4930 1839 * * * 3980 3341 3754 3499 * * * 44
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+
+D 46 4010 * 2640 2841 5248 3362 5166 4311 4043 5062 4999 5078 5015 4527 4152 3485 4771 5146 * * 46
+ 60 6472 5069 2000 415 3049 186 9820 1016 4920
+
+I 47 3091 * 5473 2978 4635 6175 * 4173 4340 2962 * 4535 5984 3911 3472 3732 3509 4493 6438 6462 47
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+
+A 48 3521 6249 * 5150 * * 5125 2128 4188 2164 4101 5655 5675 6390 4194 5372 6350 3154 6562 6316 48
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+
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+E 50 4455 * 3283 2520 7012 4989 5582 * 2922 6704 6348 5203 5180 2905 3401 3650 4745 6846 6341 4557 50
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+H 53 3214 4867 3716 3585 4133 5186 4962 5340 3949 3660 6783 4816 5898 5275 3393 3620 4261 4547 4188 * 53
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+A 60 5190 * 3851 4246 3491 4100 * 3713 4152 3189 4513 * 5460 5342 * 3545 3627 2668 * 4437 60
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+
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+V 63 2990 6462 2798 3427 4819 3574 6583 6428 3442 3810 * 6561 2601 6791 5605 4236 5616 4989 * 6450 63
+ 72 * 4357 * * 1106 901 10104 0 3875
+
+Y 64 3629 6600 3678 3530 3297 6521 5556 4466 4834 3375 6456 5158 5353 3799 3974 5706 4265 4739 4521 3606 64
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+
+A 65 2367 6547 4733 3616 * 3804 5316 4915 4499 3405 6480 6562 4180 5094 3293 3984 4137 4192 6149 6541 65
+ 83 5541 4850 0 * 4299 75 10075 1206 3812
+
+M 66 3425 * 5808 3222 3470 5846 6723 3201 4920 2970 5284 5502 * 5414 3979 5570 4551 3733 3657 4557 66
+ 0 * * * * 1582 587 9872 0 4117
+
+A 67 2807 5866 4627 3946 4768 4019 5048 4302 5169 4420 * 6998 5331 2636 5574 3206 4352 4444 * 3990 67
+ 49 6095 5730 1000 1000 * 0 10134 1030 3150
+
+T 68 3031 5890 5722 3748 3850 4172 6509 3892 5342 2121 4413 * * 5691 6366 5182 4584 3661 4703 4486 68
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+
+L 69 3469 * 6955 4251 2930 6578 * 3530 5567 2212 4856 6363 * 5348 3438 4143 4444 4940 6682 3728 69
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+
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+
+A 71 2665 * 6495 3215 4682 5828 * 4971 4288 2772 4662 4416 * 3756 6278 2965 4419 4008 * 5195 71
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+
+L 72 2755 6185 4305 5131 4878 3853 * 3235 5524 2807 5203 6236 * 6096 3797 4108 3714 3679 4954 6214 72
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+
+D 73 3836 * 2725 3591 * 4772 4258 5900 4559 4264 * 3356 5389 4028 3376 3402 5446 4831 5120 4833 73
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+
+A 75 2847 * 6799 4576 4550 5116 * 4451 5053 3043 5708 4713 * 6719 3562 3736 3869 4764 3765 2876 75
+ 81 4942 5492 1356 715 2333 319 9541 1202 6206
+
+G 76 3138 6049 3229 2866 * 3982 5186 5037 4103 3721 6288 4446 6459 3960 3780 4445 4797 4667 4911 6546 76
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+
+A 77 3044 * * 4833 4277 5828 3337 2822 4130 3112 * 4044 * 3354 5135 4777 4836 3511 6033 * 77
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+
+H 79 4747 6166 3012 3022 6365 5731 3686 5705 3786 4156 * 4003 4255 3713 2936 4466 4104 * * 5625 79
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+
+T 80 2727 * 3852 3164 6315 7161 6888 4004 3670 3252 5682 5706 6635 3363 3288 5316 4875 3782 * 6141 80
+ 102 5522 4427 2322 322 1381 699 10031 1182 2692
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+I 81 3494 * 6933 * 4297 * * 1780 5352 1998 5424 * * 5230 * * 4857 2674 5429 5517 81
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+
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+ 51 6904 5238 0 * 2983 195 10123 1000 2133
+
+G 83 3815 * 3600 2284 6695 4632 5476 * 3339 3772 * 4724 2743 5688 3367 4728 4173 * * * 83
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+
+C 85 3683 6308 4503 5924 4737 * * 3803 4173 1627 5516 * 5212 4273 4024 4019 5724 4092 * 4074 85
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+
+R 86 2598 * 3939 3739 4712 4108 * 5452 3621 3572 5840 3535 5933 3678 3648 3634 4604 6539 * * 86
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+
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+
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+
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+
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+ 26 6721 6901 0 * 746 1309 10158 1175 2073
+
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+
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+
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+
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+
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+
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+ 20 6209 * 2000 415 * 0 9513 1000 6472
+
+V 97 4508 * * 5852 3585 5828 5797 2583 5468 3656 * * 2250 * * 3806 5109 3144 3817 4156 97
+ 98 5264 4646 874 1138 3578 126 9513 1197 6472
+
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+
+S 99 4215 5498 3147 3621 6316 4301 4677 4648 3796 6348 * 4715 5337 * 6302 1756 3757 6118 * 4524 99
+ 96 * 3959 * * 5391 35 9707 0 5932
+
+N 100 3718 * 3804 3868 4900 3818 5913 4367 6775 3811 7295 3707 4148 5098 4591 3527 2436 5153 * 5359 100
+ 68 5249 5681 2585 263 3365 147 9478 1147 6362
+
+A 101 3319 6115 5938 4581 3320 6081 * 2946 4940 2442 4114 5279 * * 6176 4639 6013 2797 * 3855 101
+ 112 4904 4594 1025 975 5042 44 9513 1229 6180
+
+A 102 1743 5283 5997 6192 5047 5018 * 3326 * 3025 5016 4716 6249 5906 6078 4406 6272 2662 6197 5855 102
+ 19 * 6249 * * * 0 9424 0 6349
+
+Y 103 4847 * 4841 * 2455 5200 5850 * 5158 4003 * 5545 6044 6189 5076 * 3997 4428 4685 1376 103
+ 20 * 6179 * * 810 1218 9422 0 6425
+
+S 104 2907 5669 6098 4380 4854 3124 4820 4900 5015 4677 4747 5029 * 2928 4138 3730 3063 5370 6920 6295 104
+ 110 * 3772 * * 1242 792 9922 0 3911
+
+A 105 2870 4035 4507 3695 * 2828 4489 4816 4369 3477 * 5494 5048 5445 3432 4173 4360 4921 5890 * 105
+ 31 6414 6698 0 * 2331 320 9922 1000 3744
+
+A 106 2617 6776 5583 6502 3791 2510 * 4054 5104 4171 4070 4867 5322 5373 6346 3460 * 4221 5989 3507 106
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+ 0 * * 0 * * * 2765 0 0
+
+//
+�HHsearch 1.5
+NAME 1d1847456cd583e08ed67aaa11df98f2
+FAM
+FILE 1d1847456cd583e08ed67aaa11df98f2
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:56:54 2013
+LENG 59 match states, 59 columns in multiple alignment
+FILT 24 out of 26 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 2.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+96320136898766662073356768887458722433121100443103352014459
+>Consensus
+kxKxxxxKxxxgsxCxewxxgxCvPxxgDCGxGxreGtCxxxtkxxkCkiPCnwKKeFG
+>1d1847456cd583e08ed67aaa11df98f2
+KKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGTCGAQTQRIRCRVPCNWKKEFG
+>gi|5031406|gb|AAD38156.1|AF149801_1 pleiotrophin 2 [Danio rerio]gi|37589708|gb|AAH59575.1| Midkine-related growth factor b [Danio rerio]
+MKKKEKGKEpKVDAECSEWQYGKCVPNSGDCGNGIREATCNEQTKKTKCKVPCNWKKDFG
+>gi|152003256|gb|ABS19628.1| midkine a [Carassius gibelio]
+KNKKEKNKGgKGGSDCAEWRFGSCVANNGDCGAGTREGTCSEQTKKVKCRVPCNWKKDFG
+>gi|73968106|ref|XP_851259.1| PREDICTED: similar to Midkine precursor (MK) (Neurite outgrowth-promoting protein) (Midgestation and kidney protein) (Amphiregulin-associated protein) (ARAP) (Neurite outgrowth-promoting factor 2) [Canis familiaris]
+KKKDKVTKGGPGERVRGVDLGALHPQQQGLRRGFPRG------------yprgpdpahpvpga--LQLKKEFG
+>gi|33312179|gb|AAQ04021.1|AF419846_1 midkine precursor [Gallus gallus]
+KAKKEKMK-KEGSECQDWHWGPCIPNSKDCGLGYREGSCGDESRKLKCKIPCNWKKKFG
+>gi|57471264|gb|AAW50957.1| truncated midkine [Mus musculus]
+KKKEKVKK---GSECQEtiRVTKPCTSKTK-------------------------------
+>gi|301625710|ref|XP_002942046.1| PREDICTED: pleiotrophic factor-beta-1 [Xenopus (Silurana) tropicalis]
+--KDKQEKKVKKSDCGEWQWSVCVATSGDCGLGTREGTrsgkeCKQTIKTQKCKIPCNWKKQFG
+>gi|260800027|ref|XP_002594938.1| hypothetical protein BRAFLDRAFT_244520 [Branchiostoma floridae]gi|229280176|gb|EEN50949.1| hypothetical protein BRAFLDRAFT_244520 [Branchiostoma floridae]
+--------KGPQEGCSGWTWQPCVPAEGDCGLGQRQGTqegpnCKILSKTIKCRIPCGRRKEYG
+>gi|72081315|ref|XP_780885.1| PREDICTED: similar to Pleiotrophin (PTN) (Heparin-binding growth-associated molecule) (HB-GAM) (Heparin-binding growth factor 8) (HBGF-8) (Osteoblast-specific factor 1) (OSF-1) (Heparin-binding neutrophic factor) (HBNF) (Heparin-binding brain mitogen) (HBBM)... [Strongylocentrotus purpuratus]gi|115960217|ref|XP_001176726.1| PREDICTED: similar to Pleiotrophin (PTN) (Heparin-binding growth-associated molecule) (HB-GAM) (Heparin-binding growth factor 8) (HBGF-8) (Osteoblast-specific factor 1) (OSF-1) (Heparin-binding neutrophic factor) (HBNF) (Heparin-binding brain mitogen) (HBBM)... [Strongylocentrotus purpuratus]
+----------------EWIWSECVPNTGSCGKGQKIGNCsgepcEVATKTVDCRVKCA------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+K 1 * * * * * * * * 160 * 3255 * * * * * * * * * 1
+ 0 * * * * * * 2167 0 0
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+K 2 3383 * * * * * * * 985 * * 1326 * * * * * * * * 2
+ 0 * * * * * * 2167 0 0
+
+K 3 * * * * * * * * 0 * * * * * * * * * * * 3
+ 0 * * * * * * 2280 0 0
+
+D 4 * * 1239 4264 * * * * 931 * * * * * * * * * * * 4
+ 0 * * * * * * 2280 0 0
+
+K 5 * * 3936 1123 * * * * 1072 * * * * * * * * * * * 5
+ 0 * * * * * * 2280 0 0
+
+V 6 * * * * * * * * 931 * * * * 3254 * * * 1431 * * 6
+ 0 * * * * * * 2280 0 0
+
+K 7 * * * 3254 * 2655 * * 2200 * 3568 2211 * * * * 2707 3936 * * 7
+ 0 * * * * * * 2280 0 0
+
+K 8 * * * * * * * * 0 * * * * * * * * * * * 8
+ 449 * 1901 * * * * 2280 0 0
+
+G 9 * * 3172 3243 * 1258 * * 1923 * * * 3298 * * * * * * * 9
+ 688 1399 * 0 * 680 1412 2361 1174 1190
+
+G 10 4232 * * 3073 * 1288 * * 1449 * * * * * * * * 4262 * * 10
+ 0 * * * * * 0 2497 0 1029
+
+P 11 * * 4747 4584 * 1593 * * 3480 * * 5050 1595 * 4385 4403 * 4522 * * 11
+ 0 * * * * 0 * 2500 0 1029
+
+G 12 3363 * 4592 * * 621 * * 3468 * * * * 3525 * * 4886 * * * 12
+ 72 * 4366 * * * * 2542 0 0
+
+S 13 3686 * * 2159 * * * 4149 4006 * * * * * * 787 * * * * 13
+ 93 4006 * 0 * 0 * 2552 1010 1000
+
+E 14 4491 * 1749 1433 * 3530 * * 3998 * * * * * 2852 * * * * * 14
+ 0 * * * * * * 2608 0 0
+
+C 15 * 215 * * * * * * * * * * * * * * * 2852 * * 15
+ 0 * * * * * * 2608 0 0
+
+A 16 1997 * * 4097 * 3594 * * * * * * * 3811 2852 1881 2979 * * * 16
+ 154 3308 * 515 1737 * * 2608 1074 0
+
+E 17 * * 2860 622 * 2236 * * * * * * * * * * * * * * 17
+ 50 4876 * 1000 1000 * * 2690 1029 0
+
+W 18 * * * * * * * * 4135 * * * * * 4876 * 4491 2933 447 * 18
+ 0 * * * * * * 2690 0 0
+
+A 19 3648 * 2933 * * * 4983 3762 * 4979 * * * 3181 1688 * 2339 4876 * * 19
+ 0 * * * * * * 2690 0 0
+
+W 20 * * * * 3568 * * * * 2933 * * * * * * 4876 * 1073 1860 20
+ 0 * * * * * * 2690 0 0
+
+G 21 * * * * * 511 * * 4876 * * * * 3620 * 2452 * * * * 21
+ 0 * * * * * * 2690 0 0
+
+P 22 2933 * * 3762 * * * * 2554 * * 3280 1578 * * 3158 * 3734 * * 22
+ 0 * * * * * * 2690 0 0
+
+C 23 * 202 * * * * * * * 2933 * * * * * * * * * * 23
+ 0 * * * * * * 2690 0 0
+
+T 24 5039 * * * * * 2933 2621 * * * * * * * * 2810 906 * * 24
+ 0 * * * * * * 2690 0 0
+
+P 25 2581 * * * * * * * * * * * 324 * * 4876 * * * * 25
+ 0 * * * * * * 2690 0 0
+
+S 26 3620 * * 3674 * * * * 4876 * * 1213 * 2933 * 2274 4748 * * * 26
+ 0 * * * * * * 2690 0 0
+
+S 27 3461 * * 3067 * * * * * * * 2400 * 2933 * 1467 3214 * * * 27
+ 0 * * * * * * 2690 0 0
+
+K 28 * * * * * 761 * * 1841 * * * * 2933 * * * * * * 28
+ 0 * * * * * * 2690 0 0
+
+D 29 * * 342 * * 2898 * * * * * * * * * 3706 * * * * 29
+ 0 * * * * * * 2651 0 0
+
+C 30 * 208 * * * * * * * 2898 * * * * * * * * * * 30
+ 0 * * * * * * 2651 0 0
+
+G 31 * * * * * 297 * * * * * * * * 2898 4264 * * * * 31
+ 0 * * * * * * 2651 0 0
+
+V 32 4176 * 4083 4431 * * * * 3706 1943 4086 3817 * 4916 2898 * 4627 2599 * * 32
+ 0 * * * * * * 2651 0 0
+
+G 33 * * * * * 0 * * * * * * * * * * * * * * 33
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+
+F 34 * * * * 1389 * * 4710 * 4403 4903 * * 2637 * * 2856 2943 * 3829 34
+ 0 * * * * * 0 2690 0 1000
+
+R 35 * 4166 * * * * * * 3699 * * * 2919 * 444 * * * * * 35
+ 0 * * * * * 0 2690 0 1000
+
+E 36 * * * 619 * * * 3699 * * * * * 2841 2919 * * * * * 36
+ 0 * * * * * 0 2690 0 1000
+
+G 37 2476 * * * * 286 * * * * * * * * * * * * * * 37
+ 205 * 2919 * * 0 * 2690 0 1000
+
+T 38 * * * * * * * * 4709 * * 3479 * * * 2759 465 * * * 38
+ 303 2400 * 2322 322 * 0 2348 1173 1138
+
+C 39 * 0 * * * * * * * * * * * * * * * * * * 39
+ 136 3479 * 2322 322 * 0 2348 1047 1138
+
+G 40 * * 3574 3479 * 2284 * * 1528 * * 2520 * * * 3324 * * * * 40
+ 0 * * * * * 0 2348 0 1138
+
+A 41 3840 * 2094 1864 * * * 3305 * * * * * 2899 * * 3994 3021 * * 41
+ 0 * * * * * 0 2348 0 1138
+
+Q 42 3479 * * 2922 * * 3922 * * 3305 * * * 1088 4246 * 3502 * * * 42
+ 0 * * * * * 0 2348 0 1138
+
+T 43 * * * * * * * 3502 * * 4958 4451 * * * 2521 600 * * * 43
+ 0 * * * * * 0 2348 0 1138
+
+Q 44 * * 4246 * * * * * 998 * * * * 2590 2220 * 3922 * * * 44
+ 0 * * * * * 0 2348 0 1138
+
+R 45 * * * * * * 3377 * 974 * * * * * 3840 * 1622 * * * 45
+ 0 * * * * * 0 2348 0 1138
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+I 46 * * * * * * 3922 1620 * 2067 4451 * * 3502 * * 4642 2351 * * 46
+ 0 * * * * * 0 2348 0 1138
+
+R 47 * * 2948 * * * 3048 * 719 * * * * * 2816 * * * * * 47
+ 0 * * * * * 0 2348 0 1138
+
+C 48 * 0 * * * * * * * * * * * * * * * * * * 48
+ 0 * * * * * 0 2348 0 1138
+
+R 49 * * * * * * * * 922 * * 3922 * * 1300 * * * * * 49
+ 0 * * 3807 107 * 0 2348 1138 1138
+
+V 50 * * * * * * * 882 * * * * * * * * * 1129 * * 50
+ 0 * * * * * 0 2348 0 1138
+
+P 51 * * * * * * * * 3479 * * * 136 * * * * * * * 51
+ 0 * * * * 0 * 2348 0 1138
+
+C 52 * 208 * * * * * * * 2898 * * * * * * * * * * 52
+ 0 * * * * * * 2651 0 0
+
+N 53 3706 * * * * 3571 * * * * * 504 * 2898 * * * * * * 53
+ 0 * * * * * * 2651 0 0
+
+W 54 * * * * * * * * * 2830 * * * * 3492 * * * 376 * 54
+ 0 * * * * * * 2514 0 0
+
+K 55 * * * * * * * * 134 * * * * * 3492 * * * * * 55
+ 0 * * * * * * 2514 0 0
+
+K 56 * * * * * * * * 0 * * * * * * * * * * * 56
+ 0 * * * * * * 2514 0 0
+
+E 57 4040 * 2188 935 * * * * 3105 * * * * 3635 * * * * * * 57
+ 0 * * * * * * 2514 0 0
+
+F 58 * * * * 278 * * 3537 * * * * * * * * * * * 3492 58
+ 0 * * * * * * 2514 0 0
+
+G 59 * * * * * 0 * * * * * * * * * * * * * * 59
+ 0 * * 0 * * * 2486 0 0
+
+//
+�HHsearch 1.5
+NAME 203cc7f9db11472b54bca3769bfaf8df
+FAM
+FILE 203cc7f9db11472b54bca3769bfaf8df
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:31:50 2013
+LENG 180 match states, 180 columns in multiple alignment
+FILT 116 out of 1192 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
+CCCCCEEEEEEECCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9843799999798888706999999999999996487884899999789326986476667789999999976505898749999999999987554057
+88996399999289988871379887988999997885434258999999965999855997399999999999998519
+>Consensus
+xxxxDixfllDxSxSmxxxxxxxxxxxxxxxxxxlxxxxxxvxiixfxxxxxxxxxlxxxxxxxxxxxxxxxlxxxxgxtxxxxalxxxxxxxxxxxxgx
+rxxxxxxivlxTDGxxxxxxxxxxxxxvxvxxvgigxxxxxxxxxxxLxxiaxxxxxxxxxxxxxxxxLxxxxxxixxxi
+>203cc7f9db11472b54bca3769bfaf8df
+MGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGA
+RPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVCILDTFECLKDLFTELQKKI
+>gi|260837234|ref|XP_002613610.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]gi|229298996|gb|EEN69619.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]
+------LYPYGSySGGYPPSNMEKTMG-PGNYRVPLvaGGETITIGSIKKTEETSPseslsaekQAVVAAQDTRECTMSSITiySEERLRGTKKTYSGNG
+WLPRDPS-----WVVDSAGPAWVDSNGVTWEDV-------VTVDNVQSGDQ------RQVFGGFQGKARYWKLVITQTYTGWQPYVRE-----
+>gi|317505805|ref|ZP_07963650.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]gi|316255887|gb|EFV15112.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]
+---ATVILLLDISESMRatdvkPSRVEAARAAAIKFVDGM-APTVQLGVVTFAGNAQPLVRPSTD--HETAKKVIDQMIrpdKLEKQTATGEGIYTALQQ
+IEtiAGalGGKNHA-PPARIVLVSDGKETVpdDLNAprgaYaaartaKEKHVPVCTVAFGTKAGKitldnqvdevPVDLESLKKISDLSNSPgnscRFFP
+AESQGELAQIYQSLNEDI
+>gi|268529744|ref|XP_002629998.1| Hypothetical protein CBG13361 [Caenorhabditis briggsae]gi|187028722|emb|CAP32249.1| hypothetical protein CBG_13361 [Caenorhabditis briggsae AF16]
+---LDLVLVIDNSQP--TNTIYETISGIFGAQSRIGthyedPRSSRVAIITYNNDATTVAQFPTFKSLDQLKTELTVLKNDGTsgnESYLDTGLSSA-QA
+ILNKTEDRM-NYKKVVLVFASTYDLLYDRpdyIAhalKSNGVTVITVYTGNDKT---VKGQLKSVASDG---FAFQMSVN-TTTDLQNAL----
+>gi|221107141|ref|XP_002168519.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
+VQPMDIGIAMDTSAAT-VANWPYYQQFCRNLVDKFQMgNIARIGLITFDTIAKVPVNLDTYREPTALKLHCNRLVPDPyGRRRTDAALDIARERLFAT--
+-ARPGVPKMLFLLEHGRINGGDPSinwnqqliepsQRlkQMGVNVFAVGATPI----AGVDELKTITSTIDDQsHVLPLQGYWQLPGVVPQIAA--
+>gi|227541544|ref|ZP_03971593.1| von Willebrand factor, type A [Corynebacterium glucuronolyticum ATCC 51866]gi|227182700|gb|EEI63672.1| von Willebrand factor, type A [Corynebacterium glucuronolyticum ATCC 51866]
+---AHEMFi-aVDTSSSMEGQPLERTKEILAELSKGMfEssygeyafRPGDKISffg---LTPQS----sgpSYVAYDP--EDPDSYRELEDfangLntG
+PKISTCETLIRGLLGA-----D-GMGNAVPAVIFTTGTDEDDPECEnfesnvdslpeESGPHPAYIFLLDPA-----HTEWMDTLAEITG-GQVFDATT-
+--------------
+>gi|332308254|ref|YP_004436105.1| LPXTG-motif cell wall anchor domain protein [Glaciecola agarilytica 4H-3-7+YE-5]gi|332175583|gb|AEE24837.1| LPXTG-motif cell wall anchor domain protein [Glaciecola sp. 4H-3-7+YE-5]
+--AREVVFLLDTSGSMAGESIVQAKRAVDFALTQLHPED-SVNVIEFNDAPQALWNLAMPATANNIQRARNWVASLSanGGTEMAPALSMALHKtNLEQq
+nINEGSPVQLRQVVFITDGSVSNEDALMSLienqlADSRLFTIGIGSAP----NSYFMTQAAQAGRGTFTY-IGDINQVQQKMTELFNKL
+>gi|334112791|ref|ZP_08487045.1| OmpA/MotB domain protein [Methylomicrobium album BG8]gi|333597114|gb|EGL01956.1| OmpA/MotB domain protein [Methylomicrobium album BG8]
+------YVINDSSSSMSEDylgsgftsghapaKLSVEKTILSRINQTIPDLKLTSGIRSFGFgpCSGWgstlyNLPLTAY-SKSTFNAGIDTLTCASGGS
+PMNAAAEAAASDL------SGTSGRIALLILSDGyELqASPVPAVQAlkqqygDRLCVYSVWVGnkHEE---NGKLLLNSLS------------------
+----------
+>gi|297283897|ref|XP_001104925.2| PREDICTED: integrin alpha-D-like [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+----------------TLAASTNRS-----WLLACGP------TLHRVCGENSYSKGSCLLLGSHWEIIQTVPDALPEcphqemdIV
+>gi|710012|dbj|BAA06482.1| hypothetical protein [Bacillus subtilis]
+--TARVGLVLDITGSMRPLYKNgTVQNVVERILAVADQfdDNGLLDVWVYDNEFPRlkPVSEKDFPGYVDREILNNDRLHKFGRNDEPPVMKDVLRNMLR
+RN---RARILLSLFLSMTGAV--K---SQSNRLIEassdkpvfwqF-VGIGNGNF--DFLNKLDTLEGRVIDNtNFLHIEEIDRISD---------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * 1977 * 1088 2737 * * * * * * 2992 * * 1
+ 0 * * * * * * 4173 0 0
+
+G 2 3138 * * 5276 * 1207 4802 * 5082 3905 * * 5156 3052 3489 5236 5016 * * * 2
+ 0 * * * * * * 7696 0 0
+
+N 3 3815 * 4778 5298 5368 4495 4082 * 3006 5196 6173 3721 1828 5155 3893 4353 3794 * * * 3
+ 18 * 6357 * * * * 9163 0 0
+
+V 4 2520 * * * 4542 * 6362 2760 4787 2560 4022 6384 6436 4864 3553 5610 4015 3184 * 5641 4
+ 0 * * * * * 0 9324 0 1000
+
+D 5 6641 * 662 3793 * 5840 4951 6518 5291 6701 * 3087 6651 * 6695 5618 4945 * * * 5
+ 19 * 6258 * * * 0 9338 0 1000
+
+L 6 5211 * * * 5625 * * 1480 * 2056 4637 * * * * * 4346 1920 * * 6
+ 0 * * * * 858 1158 9412 0 1207
+
+V 7 3426 5757 * * 4530 5207 5799 2944 * 2845 4198 6526 * * * 4521 5149 1734 6633 3586 7
+ 0 * * * * * 0 9617 0 1000
+
+F 8 5844 * * * 1003 * * 2784 * 2291 5209 * * * * * 6648 4224 6748 4868 8
+ 0 * * * * * 0 9617 0 1000
+
+L 9 3205 6320 * * * 6536 * 3317 * 1275 6061 * 5831 * * 6631 6457 1733 * * 9
+ 19 * 6220 * * * 0 9617 0 1000
+
+F 10 4565 * * * 5078 6561 * 2592 * 1268 5887 6471 6579 * * * * 1886 * 5194 10
+ 12 * 6928 * * * 0 9594 0 1371
+
+D 11 * * 221 4879 * 5815 4745 * 6433 * * * 6513 6593 * 5621 * * * * 11
+ 0 * * 0 * 1029 971 9579 1012 1555
+
+G 12 3268 5800 4386 4462 6692 3529 6337 4068 * 4827 5310 4113 * 5622 4887 2910 2688 2896 * 5517 12
+ 25 5848 * 0 * * 0 9610 1158 1201
+
+S 13 * 6651 6645 * * * * * * * 6829 6704 * * * 229 3208 * * * 13
+ 0 * * * * * 0 9610 0 1201
+
+M 14 3336 * 3595 3526 * 1730 5260 6750 5742 6528 6812 4908 6619 3920 5075 2789 4540 5800 * 6458 14
+ 12 * 6933 * * * 0 9610 0 1201
+
+S 15 5834 * 5043 6624 * 3943 6683 * 4691 * 6529 4473 6343 6643 5888 531 6655 5844 * 6172 15
+ 56 6928 5071 0 * 1792 492 9601 1012 1352
+
+L 16 5583 * 6479 * 7095 6564 * 2501 6495 3593 1209 6563 * 5702 * 7027 5926 2587 6767 5862 16
+ 67 4793 6769 2347 316 1011 989 9602 1875 1936
+
+Q 17 3119 * 6909 4495 * 2425 * 6802 4753 5919 * 4536 4237 4155 3682 2333 3096 5037 * 7072 17
+ 278 3918 3197 1976 423 1917 444 9636 2293 1598
+
+P 18 4950 6739 3965 2630 6373 2499 6857 * 5129 5688 * 4486 3184 4243 4575 3075 4824 4629 6440 4979 18
+ 122 4615 4636 1381 699 120 3649 9525 1506 3214
+
+D 19 3451 * 2871 2661 * 4043 5543 6853 3621 5007 5868 4332 * 5262 4465 2660 3900 5161 * 5693 19
+ 99 4717 5132 2922 204 330 2292 9618 1533 1715
+
+E 20 4220 * 3147 4005 6843 3732 6769 * 3051 6600 5575 2704 5756 5144 3407 3201 4152 6457 6722 4450 20
+ 42 5140 * 2431 296 390 2077 9614 1407 1541
+
+F 21 5661 * 6820 6753 1729 6849 6550 2960 5386 2848 4831 6947 5374 5776 5724 6339 * 4828 2909 3955 21
+ 25 5835 * 2810 222 * 0 9667 1402 1000
+
+Q 22 3523 7117 2967 2677 * 4881 5415 5249 3613 6804 7046 3750 6010 4259 3363 2941 4964 5200 * 6531 22
+ 91 4032 * 1483 639 * 0 9695 2050 1000
+
+K 23 3857 6935 3436 3768 5987 5580 5340 3836 3574 3010 5248 5115 * 3373 4000 4155 4132 4459 6009 5097 23
+ 68 4926 6252 3447 139 * 0 9695 1485 1000
+
+I 24 2310 6842 * 4379 4738 5546 * 3576 5330 3043 3134 * * 5627 5325 5120 3301 2695 * 6813 24
+ 13 * 6841 * * * 0 9672 0 1371
+
+L 25 4941 * 6683 6695 * 6626 * 4212 1706 3428 4752 4531 * 3262 2653 4665 5805 4696 6628 4839 25
+ 50 6002 5772 0 * 2009 412 9618 1099 1547
+
+D 26 2993 * 2361 3831 * 4218 * * 3100 * * 3884 5261 3100 3680 3956 4337 4767 * * 26
+ 25 * 5872 * * 2441 294 9640 0 1739
+
+F 27 1940 5685 6534 6769 1783 5889 * 5580 5549 4200 5705 5837 6640 6320 5415 3866 4477 4303 4652 6761 27
+ 0 * * * * 1054 948 9563 0 1891
+
+M 28 2961 6811 * * 3841 5782 * 2226 6654 2233 4076 * 5898 * 6591 5799 4566 2383 * * 28
+ 0 * * * * * 0 9668 0 1389
+
+K 29 3204 6913 5673 3364 5017 4590 * 5261 2688 3698 6004 4419 6903 3898 3501 3343 4132 4446 * 6939 29
+ 0 * * * * * 0 9668 0 1389
+
+D 30 3214 * 3383 3090 4846 4776 * * 3133 4842 5318 3453 * 4421 3803 3015 3617 5725 * * 30
+ 0 * * 2807 222 590 1575 9668 1201 1389
+
+V 31 3144 * 6965 * 2713 * * 2269 6343 2144 3762 * * * * 5428 4400 3280 * 4917 31
+ 0 * * * * * 0 9691 0 1012
+
+M 32 3603 * * * 5229 4690 * 2377 6660 2154 4884 5684 5715 5611 5902 4958 4865 2163 * 5271 32
+ 26 6723 6845 1585 585 * 0 9691 1004 1012
+
+K 33 6150 * 3340 3711 * 4243 5543 6729 3253 4952 5201 3935 4485 3734 3268 2742 3633 5859 6787 5845 33
+ 0 * * * * 1035 965 9637 0 1195
+
+K 34 3139 5888 4154 3703 6657 4561 4758 4902 3051 3900 5385 4326 4606 3915 3526 3676 4034 6752 * 6674 34
+ 114 3715 * 1788 493 0 * 9686 2444 1012
+
+L 35 7099 5802 * * 2179 6615 * 3104 5971 1415 4023 6038 * 5744 * 7124 5010 3718 * 5219 35
+ 567 1815 4618 1330 732 * * 9705 5260 0
+
+S 36 4399 * 3218 4736 5917 2265 5742 6589 4856 5196 6711 3522 5096 4017 4069 2507 4858 5220 7024 * 36
+ 430 2116 5206 1859 465 1396 690 9578 4520 1826
+
+N 37 4622 * 3418 2848 6653 4051 6525 4561 4122 6891 6803 3947 2000 4028 4019 5045 5767 5555 * 5585 37
+ 294 2616 5560 1270 772 0 * 9572 3651 1963
+
+T 38 5272 * 2051 3366 * 4529 6503 * 4036 4783 5237 3570 3520 4097 5068 3667 4163 4236 * 6570 38
+ 10 * 7114 * * 0 * 9670 0 1236
+
+S 39 3866 6826 3242 5221 6392 2849 5166 5884 3191 4782 6800 3433 * 4216 4301 3158 3696 4837 * 5751 39
+ 68 6749 4764 1000 1000 0 * 9709 1018 1000
+
+Y 40 3160 6629 3133 * 4676 4777 * 2976 * 4345 * 5402 6709 5225 6541 3784 2997 2300 6750 5004 40
+ 51 * 4838 * * 0 * 9718 0 1662
+
+Q 41 5427 * 5245 4130 6761 * 3061 6966 4276 5219 * 3692 6769 2841 1712 4123 4754 5771 * 4886 41
+ 0 * * * * 454 1888 9679 0 1499
+
+F 42 4379 * * * 2412 * * 2222 7206 3534 4540 * 6816 * 7309 4874 5879 1724 * 4482 42
+ 0 * * * * 0 * 9698 0 1005
+
+A 43 2106 * 4702 5772 6683 1570 * * * 5752 6930 4010 6615 6897 5865 2356 5764 * * 5264 43
+ 0 * * * * * * 9705 0 0
+
+A 44 3463 * * * 3678 * * 1792 * 1891 5225 * * * * 5456 * 2163 * * 44
+ 12 6930 * 3585 126 * * 9705 1000 0
+
+V 45 4364 * 6879 * 4746 5278 6956 1895 * 3125 4891 5738 * 5919 5682 4485 3963 1932 5692 6699 45
+ 0 * * * * * * 9705 0 0
+
+Q 46 3846 5885 5902 4490 4348 3392 6748 5841 4180 3617 5603 4508 6993 3226 4448 3563 2465 5021 6816 6148 46
+ 11 * 6993 * * * * 9705 0 0
+
+F 47 * * 6390 * 987 6604 5104 6942 5951 5287 * * * * * 5746 * 5753 * 1486 47
+ 13 6830 * 2000 415 * 0 9690 1000 1012
+
+S 48 2930 6923 3829 * * 2336 5382 6390 7095 6737 * 3259 * * 4654 1677 3762 6830 * * 48
+ 0 * * 1000 1000 0 * 9690 1012 1012
+
+T 49 3659 7006 2422 4542 5722 3142 5432 6851 5309 * 5782 3935 6743 5085 3726 2373 3423 * * 6636 49
+ 73 4343 * 2572 266 * * 9705 1751 0
+
+S 50 4664 6541 3555 3069 6923 3712 4491 4463 3310 * 6993 3962 4877 4752 4104 3274 3127 5878 5683 6088 50
+ 78 4256 * 1710 526 * * 9705 1940 0
+
+Y 51 2267 * 6767 6819 5950 4185 5723 4282 6742 5975 * 5270 2892 * 6104 3428 3374 2355 * 4399 51
+ 23 5975 * 2821 220 * * 9705 1164 0
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+FAM
+FILE 2136b1cea2992a6bf1cf63cb4e484430
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:08:22 2013
+LENG 189 match states, 189 columns in multiple alignment
+FILT 160 out of 1133 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHH
+HHHHCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCHHCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCC
+>ss_conf PSIPRED confidence values
+9089999998899847469987873682689999999816765466876998334776515135788999699995999878998199949999999997
+64230279981999898999999970888898999993230257612788880243999850464445324589747999999734569
+>Consensus
+xxxixxxxAxsxdGxIgxxgxlpWxxxxxdxxxfxxxtxxxxxxxxxxxvimGRkTyexxxxxxxplxxrxxiVvSxxxxxxxxxxxxvxxxxxxxlxxl
+xxxxxxxxxxxIxViGGxxlxxxxlxxxlvDelxltxipxxxxgxxxfpxxxxxxxxlxxxxxxxxxxxxxxxxxxxxfxxyxxxxxxx
+>2136b1cea2992a6bf1cf63cb4e484430
+VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALL
+DSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
+>gi|294155964|ref|YP_003560348.1| dihydrofolate reductase [Mycoplasma crocodyli MP145]gi|291599950|gb|ADE19446.1| dihydrofolate reductase [Mycoplasma crocodyli MP145]
+---IKLIVATDKNNLIGNVDKMPWR-IKEEFEHFRNTTIS-------HSLLFGRTTFLGLPGklDKRTiYVLSEQTLdNCITIHNETE-L----KNL---
+---FAKFKTNNEV--LFIAGGKSIYEKYF--EYADELLISRVDGDYQGNVYL-NLNLSNYEVIKK----------QKFEKFVVETYKRIQ---
+>gi|343084894|ref|YP_004774189.1| bifunctional deaminase-reductase domain-containing protein [Cyclobacterium marinum DSM 745]gi|342353428|gb|AEL25958.1| bifunctional deaminase-reductase domain protein [Cyclobacterium marinum DSM 745]
+-KKIVYYVATSLDGYIAgENGDISqFLMQGKGVDKYQADLLNF------GTVIMGRKTYEfgyQYGlvPGQPAYPHMKHHIFSTTLKIDKlSEMVKIERG
+GLDRINEIQQN----TETDIYLCGGGQFAGYLLDHGKIDQLKIKLNPIVLgKGTKLFGsSTSNANWELIDN-ES------YAEGL--QILTYNRR----
+>gi|298245066|ref|ZP_06968872.1| bifunctional deaminase-reductase domain protein [Ktedonobacter racemifer DSM 44963]gi|297552547|gb|EFH86412.1| bifunctional deaminase-reductase domain protein [Ktedonobacter racemifer DSM 44963]
+-RKVIVLEFVTLDGVIQaPGgPEEDtsggfayggWvapY-DDDVAGtVMDKQMNLP------FDLLLGRKTFEIWAP-FWPqhadgwpgVMSATKYVASN
+SMTSSEwQPSVFLGGDIAEKVSKLKHQ----PGPDLHVYGSANLLQTLMKHDLVDAFWLKIFPLTLgSGKRLFTDGTiPAAFKVTES-------------
+---------------
+>gi|2506058|dbj|BAA22616.1| fusion protein, composed of HCV p21 (NS2), N-terminal region of HCV p70 (NS3) and TAX of HTLV-I [synthetic construct]
+-----IITSLTgrdknqVDGEVQVLSTATQS-FLAtcvnGVCWTVYHGAG-------SKTLAGPKgpitqmytnvDQDLVG---WPAPPGARSMTPCTCG
+SS-DLY-LVTRHADViPVRRRGD------SRGSLLsprpvsyLKGSAGGPLLC--PSGHVVGIFRAAVCTRGVAKAVDFI--PVESME------------
+-----------------
+>gi|12045067|ref|NP_072878.1| segregation and condensation protein A [Mycoplasma genitalium G37]gi|1723127|sp|P47455.1|SCPA_MYCGE RecName: Full=Segregation and condensation protein Agi|3844813|gb|AAC71432.1| segregation and condensation protein A [Mycoplasma genitalium G37]gi|166078768|gb|ABY79386.1| segregation and condensation protein A [synthetic Mycoplasma genitalium JCVI-1.0]
+---ISLIFDKSNSFN-------PQL-CVELLNHFKVVMLT-------KTIVVDYPSFQAWKA---QLKPFKLAVFSDNLQTelTpNSKL-TVFNNYQQLL
+VD---------NNDLIIFATPTLVQLFD--NEIDQLIVinptsks-----kdQFNCN--------wNDFVLIK---------------------------
+--
+>gi|302529715|ref|ZP_07282057.1| dihydrofolate reductase [Streptomyces sp. AA4]gi|302438610|gb|EFL10426.1| dihydrofolate reductase [Streptomyces sp. AA4]
+--KVVLYSSVSADGFIADENdQpgplFDWL-TSGDvpldesgvlkvaqasYDYTRAYWDQI------GVTVAGRHVFDLTDGwDGTPPSGiDHVVVVTHR
+PAPEgwNPDAPFhFVDGVKEAVAKAQEL----AGDRVVEVAAGDVGGQVFAAGLVDEVRMDVVPVVFgAGKRYFGSVR----------------------
+---------------
+>gi|326802356|ref|YP_004320175.1| hypothetical protein Sph21_5009 [Sphingobacterium sp. 21]gi|326553120|gb|ADZ81505.1| hypothetical protein Sph21_5009 [Sphingobacterium sp. 21]
+-MKIIIVANIAANGKVLVSDH-PHHQLPqETMDFYLKLVNQI------GNLVIGVRTFENFekfPDHVkALFKNVEIVVLADKPF-ISSTY-PVVNKPTE
+AIDYFSKK----GFTEIAIGGGTGTFNTFLEGNFVTDIYF------------------------------------------------------
+>gi|158335091|ref|YP_001516263.1| riboflavin biosynthesis protein RibD domain-containing protein [Acaryochloris marina MBIC11017]gi|158305332|gb|ABW26949.1| riboflavin biosynthesis protein RibD C-terminus domain protein [Acaryochloris marina MBIC11017]
+---TTVVLAMSADGKIADAQHSPPE-FGsdEDYAHLERQVAAA------DGILFGSATLKAGETAMrvvtqDLInarlergqpEQPAQIVCTRSGDLDPn
+lkffqqavPHWLVTTQAggqswqgtshFEQiftygteaqsidwgqTLASMP----ALGIHKIAVLGGGQIVAALLAEDLIDELHLTVCP-----------
+---------------------------------------
+>gi|306836172|ref|ZP_07469157.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC 49726]gi|304567955|gb|EFM43535.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC 49726]
+--HVTLKFAQTLDGFTAaADGTSQWITGPKAREWVHADRARR------DAIIIGTGTALADnPSlTARf-sdgsLREHqpRRVVIGKRD--LQaagekas
+hlqrl-GF-EQYDTIEGALKELYA----SGARDVLVEGGAGLAQSFIEAGAVDTLAAYIAPILLgqgrgvLANAVAHTLADaPHFTTVRT-TSL------
+--G-PDVLIEYEAR----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 * * * * * * * * * * * * * * * * * 0 * * 1
+ 0 * * * * * * 1000 0 0
+
+R 2 4661 * * * 5688 2494 * * 3611 * 3871 5860 2722 * 1737 3263 5616 * 5647 * 2
+ 114 3721 * 885 1124 * * 6496 1174 0
+
+S 3 5570 6375 4865 4730 * 6623 4842 * 1436 5631 6540 5776 3811 4584 2940 3862 3791 7192 6322 5177 3
+ 0 * * * * * * 7643 0 0
+
+L 4 * 6315 * * 4319 6991 * 1393 7259 1998 4363 * * * * * 7129 2133 * 6937 4
+ 0 * * * * * * 8244 0 0
+
+N 5 4920 5984 6805 4425 6821 6876 6011 2404 3198 4813 * 3819 * 5398 3618 3205 3012 3253 * 5967 5
+ 11 6985 * 2585 263 * * 8205 1028 0
+
+S 6 3222 * * * 4493 5309 * 2584 * 1707 4054 * * * * 4286 5346 3148 6271 3503 6
+ 16 7174 7894 1000 1000 * * 8303 1009 0
+
+I 7 6862 6242 6316 6141 3616 4404 5897 1671 4681 5373 4883 4600 * 6396 7031 4033 5814 2940 5983 3195 7
+ 0 * * * * 0 * 8303 0 1000
+
+V 8 2573 6728 * 5666 4571 5500 * 3059 * 3379 3802 5310 * 7190 * 5215 4163 2035 3706 6028 8
+ 0 * * * * * * 8343 0 0
+
+A 9 681 5352 6578 * 4377 5142 5346 4804 * 6392 7343 4549 * 7097 7533 4100 5034 5127 7336 7063 9
+ 0 * * * * * * 8343 0 0
+
+V 10 3761 5115 * 6526 6038 6664 7432 2686 6578 3625 3173 * * 3631 6383 4702 3365 1960 * 6293 10
+ 21 6773 7533 0 * * * 8343 1034 0
+
+C 11 3729 6534 2622 * * 4269 * * * 5635 * 5075 * * * 1117 2408 * * * 11
+ 47 4952 * 3607 124 * 0 8301 1389 1002
+
+Q 12 3100 * 6554 3908 7238 5413 * 4664 4360 1470 6284 4942 3863 4662 4515 5280 6167 3478 * * 12
+ 83 4155 * 2376 309 0 * 8362 1587 1002
+
+N 13 6268 * 993 5410 6910 7407 5943 * 4949 * * 1992 * 5211 4136 4840 6707 6598 * 6925 13
+ 13 6803 * 1585 585 * * 8361 1012 0
+
+M 14 * 7342 7645 6803 5069 497 5299 6698 5602 4512 6019 4529 * 6873 4761 6925 * * 5851 6330 14
+ 0 * * * * * * 8361 0 0
+
+G 15 3710 6419 * 4319 2311 3069 7183 5262 4502 4083 5718 5901 * 5904 5637 6203 6478 3068 * 2407 15
+ 15 * 6588 * * * * 8361 0 0
+
+I 16 5425 7068 * * 3938 * 6178 751 * 3100 4920 * * * * * 7471 2974 * 6224 16
+ 0 * * * * * 0 8326 0 1041
+
+G 17 1598 * 4134 4428 * 1241 * * 7199 6131 * 7339 6800 5130 7074 4540 5164 * * * 17
+ 696 1413 7147 430 1957 * 0 8326 4115 1041
+
+K 18 3752 * 4374 3744 5193 5999 4349 4605 3022 3292 * 3926 2914 5556 3817 5300 4337 4602 * 4723 18
+ 10 7191 * 2000 415 * 0 8259 1000 1197
+
+D 19 3603 5784 2129 3945 * 2922 5405 7638 4159 5395 6420 2452 4118 5796 5756 4116 6193 * * 7411 19
+ 20 7052 7389 0 * * 0 8259 1000 1197
+
+G 20 5959 * 3691 4923 * 1150 4511 7018 6431 6819 6904 2463 5297 5828 5614 3975 6408 6757 * 6241 20
+ 127 4590 4542 1616 569 2259 338 8256 1320 1257
+
+N 21 4802 * 2671 4080 * 2441 6982 * 3249 6543 6833 4542 * 3952 3746 2728 3558 7101 7369 * 21
+ 133 4018 5249 2465 288 2043 401 8270 1561 1576
+
+L 22 4615 * * 5323 4027 4669 * 2643 6638 1546 2998 5578 4995 7379 * 6206 4483 3912 * 6284 22
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+
+P 23 4358 * 2401 5247 6667 5327 7262 5744 5542 3852 6518 * 1237 5418 5516 3633 5989 6936 * * 23
+ 101 4662 5162 1764 503 0 * 8359 1348 1000
+
+W 24 5517 * * * 3585 * 6995 * 6036 5606 6090 * * 4932 6411 7171 7186 5474 491 4505 24
+ 167 3396 6143 987 1013 * 0 8288 1874 1205
+
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+ 1865 4965 528 459 1876 1945 434 8245 1260 1516
+
+P 26 5574 5295 5606 4224 * 3307 4417 * 3899 * 3998 4698 3466 4457 2496 3044 3202 * 5625 * 26
+ 316 2505 5606 1083 921 26 5808 6917 1481 6303
+
+L 27 5943 4857 5177 4351 3038 4993 6291 2958 5830 2359 7050 4359 7053 5878 5467 4409 4416 3465 6197 3968 27
+ 30 6087 7438 2322 322 1660 549 8352 1156 1137
+
+R 28 5695 * 3226 5062 * 3528 * 5140 3024 5126 * 5176 1694 5016 4996 3559 3828 5936 * 7234 28
+ 156 3516 6020 2086 388 1685 537 8351 1805 1135
+
+N 29 3077 7206 3088 1917 7503 3956 4558 * 4202 7390 6871 4377 4985 3705 6604 4179 5013 4909 * 5327 29
+ 330 2366 6608 1537 609 1785 495 8309 2683 1250
+
+E 30 4418 * 996 2316 6094 4328 5809 7216 5652 5291 * 6238 5705 5161 * 5536 5205 7029 * * 30
+ 80 4834 5718 3029 189 1192 830 8312 1256 1333
+
+Y 31 3860 7205 4402 4880 4407 5321 5353 5989 5309 1736 2890 6373 7317 4869 4109 6377 5712 3785 6495 4467 31
+ 0 * * * * * 0 8249 0 1341
+
+K 32 2864 5968 2941 3849 6580 4431 4422 6308 2705 4531 4814 5541 5783 3875 3314 4130 5437 * * 6609 32
+ 278 2510 * 1244 791 * 0 8249 2590 1341
+
+Y 33 4772 * 3796 5887 2459 3559 2636 6931 6493 5075 5277 4763 * 6498 3823 5017 5398 4250 4535 3275 33
+ 10 7208 * 3089 180 511 1746 8249 1063 1395
+
+F 34 4757 * * 7232 935 6364 6349 4287 * 3227 5042 6245 7343 7342 * 5959 4439 5719 7073 3234 34
+ 36 5340 * 0 * * 0 8358 1178 1067
+
+Q 35 3347 * 4697 3862 5575 6461 5016 6935 2250 4261 5939 4434 5983 3766 2967 3968 3885 4611 6910 * 35
+ 20 6218 * 1839 473 1365 709 8358 1084 1067
+
+R 36 3029 * 3106 2580 7318 5969 5752 * 3088 5630 7493 4084 6323 3398 3325 4056 4498 6591 * 5105 36
+ 0 * * * * * 0 8357 0 1012
+
+M 37 3970 * 7318 4592 3292 7041 5214 3555 4316 2294 3764 5221 6423 3878 4687 4839 4404 3922 7224 4686 37
+ 48 4946 * 0 * * 0 8357 1251 1012
+
+T 38 4447 7638 6709 5241 4614 5194 6375 4561 6927 3035 3374 * 7351 6925 4859 6696 1298 4581 5835 4659 38
+ 0 * * * * * 0 8357 0 1012
+
+S 39 2587 6615 4110 3515 * 5390 6664 5651 3664 3530 4752 5128 * 4233 3571 4088 2849 4422 * 6432 39
+ 21 7218 6975 0 * * 0 8357 1000 1012
+
+T 40 4955 * 3875 4042 * 2249 4619 * 3987 4201 * 2901 7315 4215 3805 3559 3605 * 6223 5355 40
+ 346 6922 2286 3807 107 * 0 8349 1013 1102
+
+S 41 3231 4881 * * 4503 5526 4485 2617 3978 4759 5412 5042 4690 6104 7104 3223 3695 2482 * 6973 41
+ 2533 4629 346 2095 385 * 0 7982 1301 3299
+
+H 42 * * 4581 4319 * * 4460 4430 2584 * * * 1449 * 3753 4503 2598 * * * 42
+ 595 4319 1798 4954 47 5633 29 5042 1051 6822
+
+V 43 2829 * 3110 2940 * * * * * 2791 4150 2269 * * 4281 * 3331 4208 * * 43
+ 72 4355 * 5248 38 * 0 4834 1014 6916
+
+E 44 4301 * 3178 2038 * * * * 4196 * * * 1667 3619 2791 * * * * * 44
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+
+G 45 2436 * 4553 * * 2225 * 4248 2857 * * 3337 3558 4151 * 3731 4250 * * * 45
+ 0 * * * * * 0 4973 0 6885
+
+K 46 * 4248 * 2236 * 4171 * 3539 1942 2709 * * * 4389 3558 * 4393 * * * 46
+ 95 * 3967 * * 6844 13 4973 0 6885
+
+Q 47 3596 * * 4283 * * 3592 4166 * * 4141 2309 4401 1824 3467 * 4362 * * * 47
+ 201 2940 * 2289 330 294 2440 4841 1123 6887
+
+N 48 6048 7251 1740 5115 5995 2313 5049 * 4057 * * 2526 * 4216 5699 4088 5041 * * 7169 48
+ 8 7468 * 2153 367 501 1768 8255 1061 2548
+
+A 49 1642 4368 5576 * * 5014 7470 3810 5056 4440 * 4661 4347 * 7412 5791 2867 2647 6601 7253 49
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+
+V 50 5777 6130 * 7223 5477 7274 5311 2046 * 2549 3738 7282 * * * 7066 4300 1549 * 6351 50
+ 0 * * * * * 0 8320 0 1012
+
+I 51 7075 * * * 5829 * * 1561 * 1723 6175 * * * 6674 * * 1693 * * 51
+ 0 * * * * * 0 8321 0 1012
+
+M 52 4505 * * 5639 3829 * 7211 3818 * 3044 1026 * * 7701 * 5977 6288 3277 5865 5515 52
+ 0 * * 4322 74 0 * 8321 1012 1012
+
+G 53 * * 6607 * * 42 * * * * * * * * * 5762 * * * * 53
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+
+K 54 3562 6675 * 7499 * 4831 4543 * 4118 6222 * 6549 5332 * 632 6984 6502 6142 7124 5069 54
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+
+K 55 5580 6912 7365 4430 * 3826 4360 7199 1525 6572 * 3352 6607 5640 2889 4855 3780 3973 * * 55
+ 37 6011 6675 3322 152 * * 8333 1091 0
+
+T 56 6364 7354 5998 * * 5699 6448 6808 7176 5154 5515 7772 * * * 3473 408 5536 * * 56
+ 0 * * * * * 0 8304 0 1027
+
+W 57 5461 * 6126 * 2016 * 6385 6565 * 4422 5830 * * 5998 * 6956 * 5166 2718 1233 57
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+
+F 58 4553 * 2393 1240 6576 5921 7496 7212 4035 4833 7375 6079 7122 3873 3847 6306 5949 6192 * * 58
+ 55 5721 5738 1590 582 0 * 8334 1190 1000
+
+S 59 2718 6567 4279 5884 * 4215 6234 4524 7051 4168 4036 6211 7217 4634 5977 1858 3417 4385 5540 5705 59
+ 64 5053 6272 1218 810 0 * 8333 1286 1153
+
+I 60 5072 * 4049 5687 3589 6292 5658 2540 7270 2111 2586 * 6572 6230 * 5464 5696 3803 5060 5011 60
+ 185 3893 4234 606 1543 876 1135 8326 1728 1065
+
+P 61 3281 * 4589 4868 5564 2887 5617 5760 4575 4558 6668 5066 1822 4698 4039 3759 5389 6412 * 6591 61
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+
+E 62 3094 5567 3801 3401 * 3306 6041 5965 3305 4916 7061 4319 3692 4184 4387 3175 4342 6470 7015 6398 62
+ 1752 1476 1541 1536 610 2848 216 8097 3565 3310
+
+K 63 4021 * 4619 5188 * 2482 4770 * 2374 * 6437 3123 4118 6271 3042 3575 4388 * 6414 * 63
+ 448 2191 4379 951 1050 1309 745 7644 2176 5005
+
+N 64 4323 * 4214 4421 2808 2921 4844 6916 5125 3469 6266 4157 4744 5623 6102 4159 5839 4418 5482 2958 64
+ 200 3041 6985 1292 757 574 1608 7839 1856 3919
+
+R 65 5156 * 5235 4940 6093 4788 5896 * 3109 4298 7376 5697 5260 5018 2486 4493 4382 * 1676 6335 65
+ 100 4549 5364 2439 294 1068 935 8167 1467 2163
+
+P 66 3787 * 4783 6026 7540 4410 6958 4505 5446 3923 6431 7652 1008 4981 7271 4392 6362 4489 * 5259 66
+ 235 2804 7131 3759 111 709 1365 8186 2360 1871
+
+L 67 5961 * 5790 6206 3280 5197 * 4388 5352 1344 4460 7569 4855 * 5704 6329 6136 6210 4524 2575 67
+ 87 4476 6201 2543 272 504 1763 8325 1462 1378
+
+K 68 3155 6413 4302 4085 * 4238 5401 * 2620 7365 6128 4044 1844 5871 4799 4806 4550 5851 7386 6288 68
+ 44 5447 7197 2349 315 377 2120 8367 1150 1196
+
+D 69 3811 * 2815 3804 7301 2167 5672 * 3935 7876 * 2228 5007 4660 5420 4319 5995 6720 * 6152 69
+ 18 6323 * 985 1015 0 * 8328 1043 1068
+
+R 70 3910 7432 5740 5936 5489 5179 6254 4484 3256 4112 4482 6746 4591 5866 1234 5627 5202 4745 * * 70
+ 93 4006 * 2062 395 * * 8337 1596 0
+
+I 71 4006 * 4684 3409 7505 7544 4216 3097 3795 3423 6019 5376 2608 4697 3716 5386 3751 5581 * 5596 71
+ 8 7430 * 0 * * * 8337 1000 0
+
+N 72 5169 4928 * 7281 4546 * 5380 3754 2666 5762 7563 1887 5867 5224 3566 4548 4221 3174 * 7726 72
+ 48 4948 * 2000 415 * * 8344 1251 0
+
+I 73 5067 * * * 3374 * 5160 1893 * 3535 6722 * * * 7578 6008 7441 1860 5763 2641 73
+ 8 7441 * 2322 322 * * 8390 1000 0
+
+V 74 7068 * * 6818 6058 * * 2529 * 6831 5303 * * * * * 6604 413 * * 74
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+
+L 75 3763 6988 7091 * 3275 6702 * 2907 * 1717 5539 * * 6890 * * 5988 1700 * 7113 75
+ 8 * 7511 0 * 1651 553 8379 1001 1163
+
+S 76 5914 7389 5503 6701 * 5694 * * 6883 * * * 5990 * 6807 819 1647 7154 * * 76
+ 35 6396 6365 3225 163 1487 636 8383 1081 1155
+
+R 77 4539 5435 4578 7308 * 6104 2768 * 4060 5844 * 4151 * 5522 1658 2637 3455 * * * 77
+ 60 5105 6438 1441 663 894 1114 8383 1268 1200
+
+E 78 5826 6117 3461 5256 * 4983 4156 6168 3999 7578 * 3746 * 3695 3795 2448 1935 7346 * 7196 78
+ 75 7437 4473 0 * 993 1007 8384 1000 1227
+
+L 79 4682 5179 4914 4122 5938 4366 6101 6021 3592 1978 4423 5551 3029 5461 4250 4353 5045 4322 * 5934 79
+ 173 3794 4605 1276 768 1995 417 8379 1697 1595
+
+K 80 3464 6921 3259 3511 4909 5208 5669 4846 3219 4489 * 4005 3726 4987 3610 3626 3858 5470 * 5761 80
+ 260 2876 5117 1284 763 2186 358 8322 2496 1880
+
+E 81 4177 6535 3344 3341 4204 3856 5427 5183 5385 4319 6596 5004 3059 4640 4959 3095 4367 5352 7300 4092 81
+ 290 2685 5232 3151 172 839 1181 8336 2553 1944
+
+A 82 3265 7264 3037 3338 5460 5199 4872 4145 4317 3468 * 4711 3658 6057 6626 3557 3695 3593 * * 82
+ 459 2125 4535 1670 544 1350 719 8293 3152 1703
+
+P 83 3521 * 4389 3629 7414 3827 4978 5723 3628 4874 6599 4060 2041 4856 4722 4183 4558 4408 7418 7323 83
+ 541 1714 6955 1721 521 796 1238 8160 3592 1907
+
+K 84 4160 * 2776 2553 * 4064 7425 6016 4559 6371 * 3937 2314 4299 6263 3754 4655 6401 5681 5891 84
+ 129 3929 5635 681 1411 1305 748 8352 1573 1594
+
+G 85 5118 * 2543 4669 7451 2080 4972 6075 4041 4892 * 2488 4939 5509 4952 4511 4492 7361 6638 7086 85
+ 153 3502 6306 1731 517 630 1498 8347 1789 1657
+
+A 86 2906 4576 5239 4757 4655 6419 5413 3323 7332 4310 5732 7320 6274 7200 5181 3466 3482 2105 6040 5071 86
+ 682 4704 1563 2865 213 2201 354 8344 1345 1349
+
+H 87 * 5481 6883 3700 4679 * 3332 3144 5516 3893 * * 6753 3760 3752 5887 2093 3766 6287 4142 87
+ 146 3844 5234 1674 543 111 3759 7936 1407 4648
+
+Y 88 5752 6277 5423 5778 2590 5317 5403 3359 4573 2513 6408 5555 7034 6862 5825 6495 3125 2852 5947 4318 88
+ 42 5850 6452 0 * 2150 368 8330 1087 1476
+
+L 89 4849 6650 * 7122 3739 5626 7180 3032 5501 2948 5811 5951 * 4518 5833 6487 3776 1607 5310 4662 89
+ 30 5585 * 899 1108 1375 702 8310 1127 1581
+
+S 90 3741 5015 4505 5419 4765 5106 5035 4683 4113 4992 * 4402 5743 5282 3733 2682 3233 2936 * 4547 90
+ 94 4552 5633 377 2120 730 1332 8342 1385 1333
+
+K 91 3557 7536 3159 3778 7680 2513 4385 5308 3795 6092 6623 3873 4637 6631 3570 3282 4702 5720 * 6401 91
+ 11 7022 * 0 * 707 1368 8364 1003 1294
+
+S 92 5517 * 2087 4547 7116 3710 5552 * 4565 5147 7186 3610 4941 7300 5403 1772 4552 5289 7241 7448 92
+ 71 5186 5611 3775 109 1116 893 8385 1191 1069
+
+L 93 5334 7089 5764 6333 4489 6228 * 2671 7301 1714 5638 7096 2805 * 6359 5999 5398 2840 5607 5117 93
+ 7 7753 * 1000 1000 286 2476 8378 1000 1352
+
+D 94 3249 7842 2853 2135 6934 4198 6714 4648 4849 5397 * 5333 4804 4146 4217 4156 4416 3644 * * 94
+ 0 * * * * * 0 8390 0 1002
+
+D 95 3300 6596 2579 1892 7479 5218 5321 7743 3934 5707 * 5529 7429 4624 6478 3081 4105 4509 7575 * 95
+ 72 4538 7510 2961 198 * 0 8390 1353 1002
+
+A 96 1607 6798 7359 4589 3776 6178 * 4030 6385 2422 7235 7350 6007 5673 5786 5761 4375 3229 6320 5913 96
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+
+L 97 4339 6362 6707 7532 5273 * 7429 2210 7243 1343 4422 * 7263 7477 7378 7468 * 2290 * * 97
+ 16 * 6520 * * 506 1756 8370 0 1187
+
+A 98 2606 * 4231 3100 * 6487 5269 6429 3315 4498 6694 3679 5998 3678 2702 3710 5040 5031 * * 98
+ 14 6704 * 0 * * 0 8399 1019 1104
+
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+
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+
+D 101 3877 * 4954 3489 * 4192 5869 6381 1656 5261 * 4420 * 3563 3100 3951 5514 6382 7535 4992 101
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+
+S 102 2667 6757 2869 3021 * 5379 5704 * 2858 6029 * 3699 6102 3169 4241 3775 5105 5715 * * 102
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+
+P 103 3238 * 4439 2772 5525 4749 * 6589 4319 3522 6802 3613 4144 3412 3796 4106 4193 5277 5683 5391 103
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+E 104 1791 * 4870 3952 5122 3131 * 4156 * 3639 4739 2926 3360 * * * * 3908 * * 104
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+
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+
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+ 139 3444 * 1822 479 2807 222 5694 1189 6690
+
+S 107 2215 * 3507 4726 * 5703 5331 * 4404 * * 3357 3618 4208 3440 3121 4173 5766 * 4221 107
+ 40 5198 * 0 * 353 2205 6679 1016 6177
+
+K 108 3479 * 4112 3861 7408 2029 5727 4864 3983 5971 * 5011 3553 4534 5738 2958 3635 7210 * 7310 108
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+
+V 109 4157 * 3084 4045 4483 2219 4962 3322 5979 4466 7207 5641 5352 6903 5510 4086 4550 3859 * 4044 109
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+
+D 110 5332 * 3638 3417 * 2573 5938 * 2668 * * 3771 4862 2886 3173 4468 4627 6446 * 6849 110
+ 38 5256 * 375 2127 0 * 8385 1303 1185
+
+M 111 6430 * 2086 3315 7507 4222 4432 5412 3788 5898 6679 3083 3968 4560 3628 4466 4068 6821 * 7435 111
+ 30 7190 6217 3000 193 * * 8437 1000 0
+
+V 112 4307 5976 6911 * 6201 * * 1289 * 2680 5999 * 7257 7182 * 6005 6033 1803 * * 112
+ 0 * * * * 0 * 8417 0 1062
+
+W 113 3450 6466 * 7446 2480 * 6356 3212 * 3196 5503 7461 * 7264 7237 5615 5365 3705 2446 2865 113
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+
+I 114 5142 4887 6809 7290 6384 6793 * 1741 * 2669 6374 * * * * 7062 7115 1257 * * 114
+ 101 5979 4275 2304 327 0 * 8376 1177 1271
+
+V 115 3525 4736 5951 4065 3939 4791 5935 1599 * 3035 4544 * * * * 5151 5997 3294 6062 5239 115
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+
+G 116 4850 * 5038 * * 176 * * 5999 6509 6893 * * * * 6099 * * * * 116
+ 10 * 7191 * * 0 * 8390 0 1054
+
+G 117 6441 * 6519 * 7213 274 * * * * * 7066 * * * 3157 5379 * * * 117
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+
+T 118 1742 * 7578 4457 7581 1931 6511 6357 5762 6366 7520 7569 3473 6550 5570 3235 4405 4734 * 7500 118
+ 0 * * * * 0 * 8383 0 1048
+
+A 119 3514 * 4470 2746 7227 4306 6567 5272 3469 5889 7494 4600 6170 3280 3728 3049 3239 5053 * 5527 119
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+
+V 120 5888 * * * 5295 6007 * 1937 * 1507 5348 7645 6843 * * * 3425 2410 6720 * 120
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+
+Y 121 2616 6102 * * 4224 4459 6022 3377 * 3253 * 5399 * 7002 * 7481 5019 3717 5993 1526 121
+ 7 7639 * 0 * 0 * 8356 1000 1038
+
+K 122 2884 * 3827 3715 * 4270 5294 7704 2887 * * 4172 5480 3265 2915 3744 3542 6596 * 6020 122
+ 0 * * * * * * 8437 0 0
+
+A 123 2572 * 4101 2945 * 5163 * * 6827 3319 5918 5497 5599 2247 5619 2927 4743 5545 7262 5667 123
+ 0 * * * * * * 8437 0 0
+
+A 124 2498 4980 7300 * 1890 5907 7839 7713 * 1684 4785 * * * * 4653 5372 4287 * 5217 124
+ 0 * * * * * * 8437 0 0
+
+M 125 4105 6015 5965 7558 4936 * * 2654 7839 929 3897 * * * 7672 5615 5552 4936 5450 6098 125
+ 456 * 1883 * * * * 8437 0 0
+
+E 126 3114 7480 2914 2348 6034 6918 * 6249 3520 5752 * 4481 4433 4175 2956 3324 4953 * * * 126
+ 134 5356 3958 2127 375 * 0 8013 1157 3909
+
+K 127 1626 6217 4453 3118 6975 5079 3232 * 4946 3109 * 4426 * 4331 4207 4702 6458 * * 6772 127
+ 71 * 4388 * * 194 2991 7917 0 4296
+
+P 128 5848 * 2634 4492 * 1644 7765 * 4591 * * 3383 2438 5537 4468 4778 7436 * * 5516 128
+ 14 * 6654 * * 801 1231 8368 0 1803
+
+I 129 4601 5452 7372 4800 4203 * 4597 4028 5063 1042 7527 * * 5572 4666 5293 7444 5639 6204 3461 129
+ 10 7213 * 1000 1000 726 1338 8357 1009 1416
+
+N 130 2733 4428 * * 6582 6004 * 1976 * 3243 7293 6641 7782 6947 * 7567 5111 1706 5215 5601 130
+ 21 6098 * 1585 585 839 1182 8372 1106 1122
+
+H 131 5844 6966 592 4887 * 7437 4804 * 5225 * 6735 5302 * 5987 5277 5057 3408 6895 * * 131
+ 0 * * * * * 0 8382 0 1012
+
+R 132 7106 7233 4433 1046 7230 6309 5114 5124 3899 * * * * 3764 2983 4678 5100 4522 * * 132
+ 0 * * * * * 0 8382 0 1012
+
+L 133 4870 5713 * * 3409 * * 2057 * 1658 4613 * * * * * * 2618 6203 3679 133
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+
+F 134 6444 6349 6076 5141 3635 5515 2777 3129 6284 4524 7286 7252 * 4217 3357 5952 4255 3399 4595 2785 134
+ 0 * * * * * 0 8380 0 1012
+
+V 135 5465 5596 * 6363 4667 * 7458 2175 7396 1258 3682 * * * 7757 * * 2631 * 6641 135
+ 15 6607 * 2807 222 * 0 8380 1041 1012
+
+T 136 5499 * 5304 5204 4098 5780 5182 5296 5214 5256 4756 4910 * 6584 6127 3134 1114 5341 6100 4934 136
+ 0 * * 3170 170 1226 804 8326 1012 1128
+
+R 137 * * 6037 5352 4579 * 4521 2376 4293 3424 6076 5720 * 5592 2911 5856 3184 2450 7414 4859 137
+ 14 6700 * 2322 322 * 0 8376 1020 1041
+
+I 138 3109 5944 7191 7421 5715 6270 4184 1902 * 3690 4596 4803 * 7683 * 4592 6146 1945 * 5278 138
+ 0 * * * * * 0 8227 0 1041
+
+L 139 4916 * 3693 3877 6708 6379 4587 6495 4423 5017 * 3962 899 6288 6724 5627 * 7128 * 5677 139
+ 33 5458 * 1415 678 * 0 8258 1202 1041
+
+H 140 4747 7091 4583 5028 * 3720 4086 3887 4447 4095 7729 5916 6340 7090 3959 5053 4184 1566 6447 4763 140
+ 8 7469 * 1821 480 0 * 8228 1162 1041
+
+E 141 3517 5111 3631 3676 5781 * 5066 3148 5685 2735 5471 5443 5574 5573 5492 4435 3265 2897 * * 141
+ 113 3936 6647 2232 345 * * 8262 1621 0
+
+F 142 4175 * * 5327 2442 5336 6268 4122 6847 1717 7429 7244 4578 * * 7262 4891 3051 * 3153 142
+ 889 1159 6344 411 2011 0 * 8233 4395 1013
+
+E 143 3270 * 3185 2395 * 3361 5559 6501 4325 5869 * 4157 4044 3858 3925 3649 4389 5597 * * 143
+ 40 5194 * 0 * 0 * 8185 1247 1032
+
+S 144 2912 3278 6983 6444 * 673 6631 * 7097 * 7468 7259 * 5983 6027 5548 6102 5600 * * 144
+ 13 6761 * 0 * * * 8225 1015 0
+
+D 145 5186 * 1405 5584 * 4047 5729 3909 4036 4745 * 4823 4766 5880 3626 5664 3734 3946 * * 145
+ 102 4100 6614 1564 596 * * 8225 1500 0
+
+T 146 3898 6029 7253 7107 * 6289 6829 5975 5169 4546 * 7202 2959 * 2251 3672 2124 2812 * * 146
+ 73 4768 6281 1614 571 * 0 8191 1328 1041
+
+F 147 5850 6944 6429 7127 1827 5847 5057 7229 4727 2024 4604 7445 5158 7438 5392 * 6216 4931 4077 2986 147
+ 23 * 6011 * * 1064 939 8151 0 1148
+
+F 148 3971 * 6630 * 767 * * 3827 * 2550 5389 * * * * * 6943 5521 6256 5047 148
+ 100 4817 5004 1217 812 694 1388 8176 1356 1228
+
+P 149 4227 * 3146 4155 * 3433 * * 4942 * * 5408 1095 5842 4470 4287 5101 5822 * * 149
+ 246 3346 4092 578 1599 427 1963 8113 1883 1373
+
+E 150 4406 * 2303 3052 5702 3489 5004 6169 3711 4426 6315 3757 3692 6333 4427 3416 6179 5914 * 7243 150
+ 134 3994 5281 1950 432 249 2659 8137 1426 1640
+
+I 151 5281 * 4745 5300 3013 3797 6589 2473 4994 2138 4786 6326 5383 6021 * 6892 4429 3252 7292 6329 151
+ 88 5471 4775 0 * 2235 344 8120 1105 1254
+
+D 152 4137 * 2180 3189 6834 4170 5323 3947 4841 4965 * 3902 3072 4766 5483 3842 4688 5161 * 6578 152
+ 485 2808 2806 589 1577 767 1278 8115 2001 1570
+
+Y 153 4523 * 3922 3605 4124 4161 6818 6267 3526 3284 4948 4624 2801 6876 3834 3711 4160 5658 6890 5149 153
+ 329 2294 * 857 1158 237 2724 7757 2532 2400
+
+K 154 4177 * 3089 4078 7018 4850 4392 4925 3673 3915 * 3432 4781 4613 3767 3027 3573 4567 * 6945 154
+ 185 3304 5714 0 * 0 * 7999 1688 1164
+
+D 155 3456 * 3296 3136 5607 3942 6993 7333 3721 4753 * 3342 4099 3677 2998 4535 4816 5556 * 5605 155
+ 32 6110 7039 0 * 0 * 8032 1058 1102
+
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+ 67 5158 5829 3184 168 * 0 8074 1208 1006
+
+K 157 4850 * 4080 2236 6751 6566 4256 4683 2771 6910 5973 5111 * 4947 2374 4363 3627 5721 6720 * 157
+ 25 * 5867 * * 1745 511 8041 0 1169
+
+L 158 * 6845 * 4093 5072 7533 5902 4112 4547 993 5172 5615 5969 5426 4934 4980 5086 3369 * * 158
+ 42 * 5108 * * 1037 964 8046 0 1257
+
+L 159 4540 * 4875 3860 * * 6955 3120 3736 2946 5183 6271 * 4083 * 3931 3170 2000 * * 159
+ 10 7214 * 985 1015 1254 784 8000 1068 1370
+
+T 160 3754 6281 3086 2335 6116 3411 5860 6116 4569 6960 * 5099 6263 4512 5946 2186 4478 7310 * 4897 160
+ 127 5604 3979 2718 238 * 0 8013 1155 1186
+
+E 161 3488 4736 4604 3141 5909 * 4798 4370 4273 5889 * 5348 6894 3401 3990 2618 3172 3559 * * 161
+ 2431 2893 557 2753 232 * 0 7788 1587 1722
+
+Y 162 4115 * 3986 * 3926 2020 3913 * * 3054 * * * * * 3920 2940 3033 * 4025 162
+ 290 2457 * 0 * 990 1010 4726 1149 4013
+
+P 163 4443 * 4457 1805 * 5060 * 5542 4156 3813 * * 3808 4307 2835 4659 3546 4151 * * 163
+ 57 * 4686 * * 2389 306 6187 0 2618
+
+G 164 5149 * 3197 2732 4682 3322 4602 5005 4548 5595 * 5625 5485 5438 4658 2350 3687 4610 5830 * 164
+ 395 5830 2173 0 * 4583 61 6284 1000 2435
+
+V 165 * * 5185 5393 5236 4317 2749 2853 4117 3527 4345 * * 5811 * * 5542 1506 * * 165
+ 223 * 2802 * * 2870 212 5704 0 2869
+
+P 166 4036 * 4184 3264 5298 4232 * 4817 5349 5409 * 5064 2022 4064 3982 4071 3301 4117 * * 166
+ 295 5458 2626 1585 585 2286 331 5510 1046 2893
+
+A 167 2322 4898 * 3988 5073 * * 5050 3036 * * 4100 5396 4179 5497 2408 4020 3154 * * 167
+ 131 * 3525 * * 3264 159 5464 0 2916
+
+D 168 4255 * 1762 2626 5111 4980 * * * * * 4758 5122 * 3505 4170 4267 4068 4154 4231 168
+ 684 4943 1534 1000 1000 4635 59 5499 1034 2938
+
+I 169 * * * 3450 * * * 2491 * * * * * * 3526 2224 3562 1961 3501 * 169
+ 131 * 3526 * * 4195 81 5012 0 3563
+
+Q 170 * * 2851 2984 4865 4459 4390 4460 2887 4555 * * * 3459 3487 4359 4736 4559 * 3726 170
+ 0 * * * * 507 1754 5138 0 3545
+
+E 171 3845 * 2837 2414 5815 6029 3999 * 4700 5060 * 4062 5937 4477 5391 3918 3381 4370 5405 4063 171
+ 25 5841 * 3459 138 324 2313 6389 1006 1796
+
+E 172 4501 * 2441 1701 * 3993 5916 * 3565 6020 * 5125 6000 6116 4327 4120 4461 5407 * 4326 172
+ 43 6077 6096 1585 585 * 0 6594 1035 1107
+
+D 173 4708 * 3133 2869 6124 3553 3761 4895 3993 * * 2040 * 5580 4864 4351 4013 6136 * 5838 173
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+
+G 174 4570 * 2499 5522 4868 1905 4149 5558 4417 6095 * 3664 4224 4642 * 4422 5171 * * 3793 174
+ 150 * 3340 * * 1020 980 6700 0 1104
+
+I 175 4058 5713 4971 6009 3862 5771 4364 2637 5851 3268 * 4906 3862 * 5773 4237 4365 3121 5069 3485 175
+ 231 6151 2901 0 * 0 * 6551 1000 1442
+
+Q 176 3534 4821 3992 3317 * 3382 5475 4229 4877 * * 3701 3661 4237 3662 3265 3090 * * * 176
+ 31 * 5537 * * 2224 347 6465 0 1270
+
+Y 177 * 5617 4899 * 1961 * 4422 3885 * 3459 * * * * * * 4222 3992 5069 1566 177
+ 52 5787 5873 2000 415 0 * 6448 1005 1285
+
+K 178 5237 * 2984 3338 6081 * 4433 3664 2942 * * 6195 * 3491 3403 3849 3389 3319 * 5973 178
+ 0 * * * * 0 * 6787 0 1000
+
+F 179 * * * * 1014 * 4955 2601 * 3935 5701 * * 4363 * * * 3896 6010 3441 179
+ 0 * * * * * * 6805 0 0
+
+E 180 4588 4897 6205 3166 * * 5723 3572 3846 3280 5867 * 5913 4321 4017 * 2973 2239 6105 5316 180
+ 0 * * * * * * 6805 0 0
+
+V 181 * 6425 4054 4441 6101 5640 6607 2933 3377 5181 * 4490 * 6037 5031 5701 1911 2708 5455 5001 181
+ 24 5913 * 3700 115 * * 6805 1028 0
+
+Y 182 * * * * 3604 6101 * * * 3482 * * * * * 4539 * * 2685 701 182
+ 0 * * * * * * 6805 0 0
+
+Q 183 4988 6205 5923 2375 5891 * 5870 5362 2906 * * 4775 * 3293 2813 5106 3451 2856 * 6105 183
+ 0 * * * * * * 6805 0 0
+
+K 184 4698 5701 * * * * * * 1743 * * 3292 3964 4474 1359 6118 * 5155 * * 184
+ 0 * * * * * * 6805 0 0
+
+S 185 4277 * * 5659 * * 4641 3218 2080 5386 6119 4084 3832 4563 2427 3109 6214 5682 * * 185
+ 289 2460 * 973 1027 * * 6525 1075 0
+
+V 186 * * * * * * * * 3117 2008 * * * * 3130 * 3003 1332 * * 186
+ 0 * * * * * * 3508 0 0
+
+L 187 * * * * * * * * * 0 * * * * * * * * * * 187
+ 0 * * * * * * 2074 0 0
+
+A 188 0 * * * * * * * * * * * * * * * * * * * 188
+ 0 * * * * * * 1000 0 0
+
+Q 189 * * * * * * * * * * * * * 0 * * * * * * 189
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 271643171bfa4abfd3da32e2d13e3392
+FAM
+FILE 271643171bfa4abfd3da32e2d13e3392
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:29:03 2013
+LENG 186 match states, 186 columns in multiple alignment
+FILT 154 out of 1736 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 11.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH
+HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9985489999999999999999999658876665884321579999988906999999889961034788887614878999998977301789999999
+99997479996899998834663156788887642022579999999987499759999678886999999999998520322389
+>Consensus
+xxxxxxxixvxGxxxxGKstlixxlxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxixDxxGxxxxxxxxxxxxxxxxxxixvxdxxxxxxxxxxxxxxx
+xxxxxxxxxxxxivvxnKxDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSaxxxxgixxxxxxixxxxxxxxxxxk
+>271643171bfa4abfd3da32e2d13e3392
+GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWY
+PEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK
+>gi|56698355|ref|YP_168728.1| elongation factor G [Ruegeria pomeroyi DSS-3]gi|56680092|gb|AAV96758.1| translation elongation factor G, putative [Ruegeria pomeroyi DSS-3]
+-------FTVLGPSQSGKSTLVEAI--SRLDSRPTTFDLSETVHLHGFSYLEEPWCAIDVDGGSDALAFAGPAMAISDAAVIVVPPDPEAAVLCAPYLRL
+VEEA----RIPAFLFINRMDNPngRIRDIVAALQAycsHHIALRQVPIR------------------------------------------
+>gi|321473698|gb|EFX84665.1| hypothetical protein DAPPUDRAFT_194445 [Daphnia pulex]
+-GSRVLQVAILGIPNAGKSTLVNQLSGWQTcsVSRKVHTTKKMSKTVLIRDETQIV--FLDTPGlvlpaeakqfnlDKSFVIDPEVALSKANLLLVLHDI
+SNKWTRGSLSSKILRLLHLY-PDKESVLVLNKIDLLKEKRLLLDytnkltegivggksiasntdqrkrsmsRQNSDMSTVNESNAElseptnsrsmseke
+vakRIEGKMGwpnFSRVFMISAIDGDGVSDIVEHLYGAAKPGRWM--
+>gi|290974801|ref|XP_002670133.1| predicted protein [Naegleria gruberi]gi|284083688|gb|EFC37389.1| predicted protein [Naegleria gruberi]
+-----VEYLIkytpIGEHSIGKSTFFNHVQFGHYENTsLWKS---EAIkKEFTISNeSSLVQVLFD--LDPRYQtkeTFIRGLIRHNMSFLLSFGINYEC
+TFEKLGDWYHLIKQEKLETMGIMI------------------------------------------------------------------------
+>gi|291530479|emb|CBK96064.1| small GTP-binding protein domain [Eubacterium siraeum 70/3]
+--MPFGAVkGGQSHENNQYWNSCPCRRWKDDLDGEPAICQRshfrtgerrkrdnedghhVFGAAA---WdyhssgshflpgHRCKVNIVDTPGHMDFLAE
+VYRSLAVLDGAILVISAKDGVQAQTRI--LFHALRKM--NIPTVIFINKIDQAgvDLQSVVQSVRDKLSADIIikqtvslspeivleentdieawdavie
+nndellekyiagepisreklAREEQQRVQDASLFPVYHGSAKNGLGIQPLMDAVTGLFQPIGE---
+>gi|320165903|gb|EFW42802.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
+---------LLTLPALTELKLeknqITDM--GAQSI-----------AVALRNKKAQLFRLclnWNKIGD----------FGARAIAegVAVSTALASLE
+YCSlAFDLWMNN--NQIGNVGAQAIGSALS------------------------------------------------------------------
+>gi|260810141|ref|XP_002599862.1| hypothetical protein BRAFLDRAFT_127644 [Branchiostoma floridae]gi|229285145|gb|EEN55874.1| hypothetical protein BRAFLDRAFT_127644 [Branchiostoma floridae]
+--KTNISIVVIGHVNSGKSNTTGHLiykcggidkrniekyereaaearfneiQQELSAcIKKVGYDPGT--VAFVPVSAQHGDNMVEPSGNMPWYKGWSi
+ernegngSGTTLlealdsilppqrpTDKPLRLPLAdvynfrpggmgtmpvgrvetgilKPGmevtfapagltaevepvdikhESVPEALPGDTVGInfK-
+-----NADVSVKELwrgcvagdSKNDPPKEAVSFD--------AEELSACIKKVGYdpgtVAFVPVSAQHGDNMVE-----------------
+>gi|148673550|gb|EDL05497.1| Ras-related GTP binding D, isoform CRA_c [Mus musculus]
+------RILLMGLRRSGKSSIQKVVFHKMSPSETLFLESTNRICREDVsNSSFVNFQIWDFPGQIDFFDPTFDYemiFRGTGALIFVIDSQDdyMEALAR
+LH-LTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQR-ANDDLADAGLEKIH--LSFYLTSIYDHSIFEAFSKVVQKLIPQLP---
+>gi|195998195|ref|XP_002108966.1| hypothetical protein TRIADDRAFT_52490 [Trichoplax adhaerens]gi|190589742|gb|EDV29764.1| hypothetical protein TRIADDRAFT_52490 [Trichoplax adhaerens]
+-------VLVVGHDGSGKSTLISRMKNIEEKEKYHCSGLDYRYIDVDDEdsDEIYRFGVWILHGNAEHKSLLKFAINNDNlrdtAVVLVVDLSRPWEVMS
+CLTGWTKVLKEHMQSLNIdknVIEEMKSNIVNQFQGYSEVADDADKSLKEEEKVYLPLGEDGATLAYTTLKEKKNVDILLRYLLHRLY-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * 3264 * * 781 * * * * 1671 * * * * * * * * * 1
+ 0 * * * * * * 4652 0 0
+
+S 2 4316 * * 4598 3582 * * 4365 3376 * * 2250 2906 * * 2208 3058 * * * 2
+ 0 * * 2322 322 * * 7660 1014 0
+
+P 3 5986 * 4301 3608 * 5295 5371 * 2425 3798 3182 4473 1984 5882 * * 3418 5310 * * 3
+ 29 5650 * 1000 1000 * * 9369 1008 0
+
+Q 4 * * 4040 4171 5857 * 4041 4911 2420 6042 * 3052 5217 3507 2930 3514 3879 4998 * 5869 4
+ 42 5125 * 1406 684 * * 10088 1296 0
+
+A 5 4593 * 4950 3738 * 4670 4117 4514 3399 6535 4872 3445 3041 4104 3729 3229 3579 5477 * 6474 5
+ 19 6281 * 0 * * * 10470 1000 0
+
+I 6 5865 6301 6194 * 2968 6907 * 1788 6405 2513 3744 4785 6377 * 5237 5574 6570 3321 * 3994 6
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+K 134 4747 * 4304 4251 5229 5067 6329 3779 3290 2428 5904 4144 * 3474 3998 4538 4647 3703 6008 5128 134
+ 59 6112 5273 0 * 6137 21 10499 1009 7929
+
+K 135 3715 * 3918 3700 6514 4767 4118 4540 2932 3594 5200 4122 6001 4257 4345 4343 4177 5343 6116 3769 135
+ 34 * 5418 * * 3439 140 10481 0 8004
+
+L 136 4705 * 4911 4578 5297 5482 6244 2940 4241 2163 4120 4613 5463 4113 4169 3408 4824 6137 6044 5276 136
+ 41 * 5144 * * 3901 100 10481 0 7734
+
+T 137 4312 5213 3802 3376 5330 4115 5204 4147 3466 3456 6363 4645 6343 4066 2729 4395 4844 5397 * 5276 137
+ 111 * 3760 * * 4063 89 10546 0 7585
+
+P 138 3752 * 3945 3273 6156 4320 6286 4184 3603 3680 5066 4226 3433 2859 4776 4028 * 4710 * 6018 138
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+
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+ 37 * 5306 * * 3194 167 10949 0 3555
+
+T 140 5920 5709 3560 4333 5498 5989 6236 5814 3652 4424 5787 4288 3607 5531 4018 2053 3376 4661 7178 5922 140
+ 58 4657 * 4850 51 2084 388 10932 1930 3717
+
+Y 141 4537 * 3365 3538 4156 5331 6919 4137 3493 3164 6867 3970 4272 5004 3764 4503 4837 3755 6693 4812 141
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+Q 143 4967 * 2569 2009 5698 6922 6100 3676 4205 3709 5428 5410 * 3288 4813 4382 7165 4548 6721 6933 143
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+
+G 144 2678 6925 6036 4636 6139 2420 5999 2930 6000 3511 4415 5329 5598 7067 3931 4303 5206 3827 6892 7205 144
+ 40 * 5209 * * 2067 393 11129 0 2786
+
+L 145 3805 7912 4410 3057 6598 5734 5442 3606 2725 4168 5168 5107 5529 3362 4004 3676 4664 4949 6709 5770 145
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+
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+ 22 6843 7222 3459 138 * 0 10993 1000 2992
+
+M 147 4803 5592 4591 * 2258 6618 7227 4674 4245 2055 3435 5887 6849 6060 * 7290 5890 4688 4019 3527 147
+ 44 5540 6888 2814 221 2036 403 10999 1306 3111
+
+A 148 1921 3517 5081 4983 4658 5899 * 3809 3840 3521 * 4990 5871 * 4858 2950 4936 4743 6895 6391 148
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+
+K 149 3457 * 3783 3887 6962 5059 4668 5601 2671 3739 5133 4323 7109 2867 3086 5343 5451 4627 * 6579 149
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+E 150 4163 5818 6013 2918 5540 5966 6430 4907 2551 3151 5430 4715 5816 3427 3329 3825 4710 5298 * 7087 150
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+
+I 151 7268 5417 * 6025 3992 5882 3818 3335 4377 2790 5416 3328 7065 5014 3951 4383 5124 4156 4391 3240 151
+ 157 3501 6082 2957 199 2428 297 11006 2495 2743
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+G 152 5531 7068 3403 4978 6874 1799 5260 6611 3740 5305 6827 3247 3918 4937 3490 4058 7355 6698 4856 * 152
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+
+A 153 3133 4022 4337 5367 3382 4233 5762 3653 4186 3804 4591 4093 5315 4300 4636 5862 5062 3639 * 4896 153
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+ 29 5629 * 1925 441 0 * 11069 1320 1000
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+
+C 159 4728 3124 * * 4673 4987 * 2891 * 3189 4579 7664 7534 * 6975 4173 2567 2131 * 5658 159
+ 0 * * * * 0 * 10961 0 1116
+
+S 160 5966 4774 4056 * 5954 6109 5541 5602 * * 6865 3652 6219 * 6040 713 4209 4888 * * 160
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+
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+
+Q 164 4849 6859 3294 4287 4841 1929 6502 5434 3867 5099 * 2868 3644 4284 4953 4303 6179 6784 * * 164
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+ 0 * * * * * * 11017 0 0
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+V 170 3472 5562 * 5985 6003 5446 6775 2779 * 1560 5011 * 4920 * 6667 4585 5238 2528 5885 6976 170
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+D 172 5019 5911 3005 2132 5842 5314 4378 6934 4168 4689 5955 2968 * 4234 4075 4061 4075 6811 * 5510 172
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+
+E 173 3980 6884 4823 3836 4588 4304 4189 5184 3123 3200 5202 7308 * 4067 4578 4035 4114 5155 3478 4235 173
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+A 174 3966 * * * 4931 5439 * 1550 * 1534 5710 * * * * 5740 5189 3064 * 6889 174
+ 0 * * 4392 70 * * 10912 1000 0
+
+I 175 3399 5507 5828 6708 5919 4559 * 2694 3917 2610 5336 4756 * 4468 4043 4129 4732 3181 * 4643 175
+ 0 * * * * * * 10769 0 0
+
+R 176 4405 6451 3525 3073 6787 4120 4627 6614 2868 * * 5693 * 2988 2667 3376 3603 * * * 176
+ 0 * * * * * * 10751 0 0
+
+A 177 3669 4712 * 4164 6379 6456 5210 4440 3385 2899 5749 4823 * 3420 3816 3803 3778 4255 6804 3700 177
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+
+V 178 2896 5520 * * 3467 * * 2220 5731 2094 4971 * * 5627 * 6817 5451 2708 6369 4766 178
+ 0 * * * * * * 10673 0 0
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+L 179 4401 6678 4902 4905 3706 * * 3293 5477 2303 4272 5134 3869 4478 4667 4602 4547 3411 6046 4430 179
+ 17 6414 * 1585 585 * * 10399 1045 0
+
+C 180 4306 6600 3640 2635 6106 5196 4977 5097 3746 4955 * 3232 4516 4708 3554 3641 4167 6200 * 3934 180
+ 0 * * * * * * 10227 0 0
+
+P 181 3898 5697 4901 3585 6151 3294 * 4901 3921 4297 5971 3532 3388 3173 4385 3057 4742 5951 * * 181
+ 0 * * * * * * 9916 0 0
+
+P 182 4832 5859 5740 3751 * 4639 5848 5836 2866 4118 5793 3771 2562 3665 3491 4601 4024 5914 * 4746 182
+ 0 * * * * * * 9654 0 0
+
+P 183 * 5228 * 3282 * 4618 4422 * 3883 2850 * 4033 2180 3924 4499 3655 5684 4572 5450 5569 183
+ 45 5020 * 0 * * * 9252 1011 0
+
+V 184 5095 * * * 2916 4962 5158 2889 4376 1857 3594 4172 * * * 4210 5223 3745 5309 * 184
+ 0 * * * * * * 8756 0 0
+
+K 185 3743 * 2790 * * 3851 4667 * 1222 * * 4638 * 4962 3764 3359 * * * * 185
+ 0 * * * * * * 7966 0 0
+
+K 186 * * * * * * * * 138 * * * * * 3451 * * * * * 186
+ 0 * * 0 * * * 5347 0 0
+
+//
+�HHsearch 1.5
+NAME 2798277b8842d36de2206ba3ae8863fc
+FAM
+FILE 2798277b8842d36de2206ba3ae8863fc
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:16:48 2013
+LENG 221 match states, 221 columns in multiple alignment
+FILT 109 out of 1133 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCEEEECCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
+HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHH
+HHCCCCCCHHHHHHHHHCCCC
+>ss_conf PSIPRED confidence values
+9966999789990599999999986999779972743778874211368778777799899877758999999998446689999999999999999999
+9999999872671344489999999999999999999998559970569999999999999999999829112101889999999998499999999863
+740799956677764201085
+>Consensus
+MxxxxLyxxxxspxxxxvxxxlxxxxixxxxxxxxxxxxxxxxxxxxxxpxxxvPxLxxxxxxixesxxIxxyLxxxxxlxpxxxxxxxxxxxxxxxxxx
+xxxxxxxxxxxxxxxxxxxxxxxxxxxlxxxlxxlexxLxxxxxxxlxGxxxtxADixxxxxlxxxxxxxxxxxxxxpxlxxwxxxxxxxpxxxxxxxxx
+xxxxxxxxxxxxxxxxxxxxx
+>2798277b8842d36de2206ba3ae8863fc
+AGKPVLHYFNARGRMECIRWLLAAAGVEFEEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLVQTRAILNYIATKYDLYGKDMKERALIDMYTEGILD
+LTEMIGQLVLCPPDQREAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDVHLLELLLYVEELDASLLTPFPLLKAFKSRISSLPNVKKFLQPG
+SQRKPPLDAKQIEEARKVFKF
+>gi|241668347|ref|ZP_04755925.1| glutaredoxin 2 [Francisella philomiragia subsp. philomiragia ATCC 25015]gi|254876880|ref|ZP_05249590.1| glutaredoxin [Francisella philomiragia subsp. philomiragia ATCC 25015]gi|254842901|gb|EET21315.1| glutaredoxin [Francisella philomiragia subsp. philomiragia ATCC 25015]
+---MKIYLYHHCPYCIKVRLVADLSKLDYEMIILANDDEKSHID---RIGSKQVPFLEkDDGTFIKESDEICKFIAKTQNFEIAESTIDNYAKESVAKLA
+EHYRRIVYPRiphhpgnecdFPTQSakdyfinKKSQYIgdfDallrnpPyDSIIAINKILREIAPFVKT--PF-ING-DnFSWDDINIFPVFFILTMARD
+L-LEIPNNISNYIKNIETKTNIEL--------------------------
+>gi|195171951|ref|XP_002026765.1| GL26999 [Drosophila persimilis]gi|194111704|gb|EDW33747.1| GL26999 [Drosophila persimilis]
+MAQPlKFYFDFLNQSSRALYIFLEASKIPFEAIPISMLkesmqatatttatatTLW-RlktpiqpirsdalyavevnigfyclwgLNRNvPISSYYRIIM
+AELFNYSLSSLSSLFPFHPPEPasPldWVPFRSLGRSRIDEYLAWQqtnmgvacTDYFQQKWLVPYLQKTRPAENAVNVAGKQLEHTLNDFEQLFLN-SR
+KFMLGNNISFADLSAICEIDQPKSIGFNAFQNRNKLARWYEAVRDElgPYYKDVHAEFE--------------------
+>gi|224014714|ref|XP_002297019.1| predicted protein [Thalassiosira pseudonana CCMP1335]gi|220968399|gb|EED86747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
+---MKLHVLPISANSHGCLAIVKHLNLDDKVEIIDAygktrTPEFIAMN-----PAHCCPTLQFsneSDGAIWESAAVMRCLCNSFEggeeLYPTDAIKR
+GKIDMVLDWKNStLYPDLFHIaymMFGVA-VDEDMAKTQFGKLIDTHFPMlLDTFLKD--TKFCYSDTPTIADLAVAPMITLLKGRK-KFWEKVPeGVKE
+YYGRVLeAFPGMGEYVK-----------------------
+>gi|198434929|ref|XP_002128793.1| PREDICTED: similar to methionyl-tRNA synthetase [Ciona intestinalis]
+---MMEINGQPSPEKLKVLLACFETG-------------LhkIKVN-----Skp--GSALsVRLdNEIEFTSSNAAVRYTYE------TQGVKVdVETLH
+WFEWEVTILRK-LVgsyFSLSDKKILNI----NEFPNLISSLQYLENSInsg-K--LECDFSTKISAANCVIFctisPLFCN--PG----iEGEFPVLRK
+HFAIFMNRGSFRSAW-kE----------------------
+>gi|219118467|ref|XP_002180005.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]gi|217408262|gb|EEC48196.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
+-PKITLFrdHAGWCPYCEKTMLLIEEKQVPVKIDLVPMRsygdkpQEFLRKV-----PNGLLPAIEVNGQVVTESQVIMELLDQWHSkqdgyrpMLPReg
+DTAGWERYKKLARLERDLFGWWCTLLFRPEGGNPltmlmassRDSMSGAMQGFLDCMQKVDQELLSSNGPWFFDehDYPTMIDFVYGLDLRNPKW-----
+--NLKGLNAWLEAFEKREPYLAFKSDYYTNVMDIPPQYGPGYDGGFN-
+>gi|151967130|gb|ABS19445.1| multivalent antigen sj97-23 [synthetic construct]
+MATLGTGMRCLKSCVFILNIICllcslvligagAYVEVKFSQYEANLHKVWQAA------PIAI--------IVVGVVILIVSF-------LGCCGAIKE
+NVCMLYMyafflivlLIAELVAAIVAVVYkdkiDDEINT---LMTGALENPNEEITATMDKIqtsfhcCgvkgpddykgnvpasckegQ--EVYVQGCLS
+VFSAFLKRNLIIVACVAFGVCFFQLLSIViacCLGQRIHDYQNV----------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 4504 * * * * 4469 * * * * 208 * * * * * * 4464 * * 1
+ 149 * 3349 * * * * 7434 0 0
+
+G 2 2830 * * 4845 * 4861 * * * * * 4705 1375 4843 * 2148 4757 3862 * * 2
+ 327 * 2303 * * 1326 735 8167 0 1275
+
+K 3 5252 * 2976 4285 * 5379 * 5098 2774 * 2767 5199 5341 4393 3689 2414 3567 * * * 3
+ 0 * * * * 213 2863 8776 0 2287
+
+P 4 4614 * * * 4010 5253 * 2705 * 2663 2234 5945 3235 6382 * * * 4383 * 2603 4
+ 38 5283 * 0 * 0 * 9846 1161 1015
+
+V 5 5278 6371 6226 3223 * 5796 4292 3372 2084 4743 5322 * * 6641 3465 * 2355 3612 * * 5
+ 0 * * 1585 585 * * 9926 1000 0
+
+L 6 * * * 6215 3629 * * 3556 * 504 5165 * * * * * 5093 4102 * * 6
+ 0 * * * * * * 9937 0 0
+
+H 7 6435 * * * 3657 4285 4248 3350 6036 3571 6504 * * 6261 * 6140 5209 4114 5439 1115 7
+ 73 4748 6398 811 1218 * * 9969 1687 0
+
+Y 8 6235 * 5438 * 4113 2453 3649 6387 6015 5379 5118 4159 * 5326 6251 3405 3249 4731 5325 2272 8
+ 0 * * * * 0 * 9952 0 1000
+
+F 9 4508 * 3821 6407 2646 4027 4340 4913 6418 3259 4886 4182 5401 6306 4700 3378 4898 6597 3735 3742 9
+ 19 6240 * 0 * * * 10015 1009 0
+
+N 10 3327 5902 3603 4869 5461 3775 4328 6579 5578 4894 * 3582 2453 5402 4120 4858 3250 * 5623 4342 10
+ 127 5551 3990 2700 241 * * 10099 1149 0
+
+A 11 3381 * 4341 5434 3934 2535 4537 4188 * 3287 5627 4810 3986 4474 6285 4707 3843 4035 6490 4787 11
+ 75 6406 4685 0 * 0 * 10037 1000 1918
+
+R 12 4597 3157 5444 6401 5398 6586 5222 * 5173 * 6348 3272 4854 * 3557 1167 5771 * * 5371 12
+ 16 6484 * 2000 415 0 * 10117 1000 1389
+
+G 13 3545 5457 * * 4287 2905 4962 4943 * 4987 * 6587 1190 5553 * 3794 4501 6451 * 6271 13
+ 0 * * * * * * 10286 0 0
+
+R 14 5020 4116 6368 4629 2768 5443 * 6308 5349 4631 * 4749 5011 6285 2772 3116 4833 * 4170 2488 14
+ 0 * * * * * * 10286 0 0
+
+M 15 2723 2635 * 6559 * 3237 * * 6481 6339 6676 6434 5069 6497 * 1855 3097 3445 * * 15
+ 65 * 4497 * * * * 10324 0 0
+
+E 16 4045 6400 6226 3282 4758 * 4797 4525 6237 2788 4884 6302 5402 2992 2103 * 5501 5628 4945 4897 16
+ 21 6095 * 1000 1000 0 * 10268 1037 1596
+
+C 17 2965 5625 * * * 5730 6589 4766 2401 3278 4587 6631 5052 6451 1732 5009 5494 4835 6541 * 17
+ 0 * * * * * * 10322 0 0
+
+I 18 2773 5378 * * * 5642 * 2206 * 3162 5747 6660 5011 * * 5624 4833 1449 * * 18
+ 0 * * * * * * 10310 0 0
+
+R 19 5062 5469 6625 4381 5470 6828 5061 4728 3625 2765 5085 5404 * 4050 1655 * 4668 6646 4645 4574 19
+ 16 6467 * 0 * * * 10351 1030 0
+
+W 20 3435 5710 * * 4571 4970 6709 2036 6673 2608 2690 6541 * * * 4928 5534 3770 3783 5567 20
+ 0 * * * * * * 10351 0 0
+
+L 21 2000 5797 * * 4325 6609 * 3385 * 2287 5806 * * 5489 5475 5101 4370 2595 5229 4686 21
+ 14 6705 * 0 * * * 10351 1000 0
+
+L 22 2786 3709 * * 3770 * * 3757 * 945 5185 * * * * 5633 * 5006 6722 5404 22
+ 53 4791 * 2416 299 * * 10360 1494 0
+
+A 23 2271 * 4361 2252 4314 4998 3925 6522 3362 4080 * 5053 * 5088 3217 * 4994 * 5575 * 23
+ 0 * * * * * * 10360 0 0
+
+A 24 3348 6425 6522 2135 3864 * 4584 4204 4973 2438 5084 4777 * 6683 5597 6621 * 4877 5159 3294 24
+ 14 6696 * 3585 126 * * 10360 1000 0
+
+A 25 2827 4631 * * 5625 4505 5505 5972 2043 2414 6603 6729 * 5070 3906 3399 5048 6086 5619 6647 25
+ 43 5087 * 1243 792 * * 10360 1361 0
+
+G 26 5200 6622 3709 2997 * 1484 * * 3039 * * 3560 6976 3541 4664 4608 * 6385 * 6549 26
+ 38 * 5251 * * * * 10363 0 0
+
+V 27 4123 6559 6524 * 5496 6408 6674 1690 5066 2069 * 7016 5923 5117 5690 * 5437 2295 * * 27
+ 42 5129 * 2105 382 * 0 10343 1300 1321
+
+E 28 4352 * 3032 2896 * 5557 6651 6969 3459 5083 6229 4243 1769 5143 5518 3821 5166 5244 * * 28
+ 45 5029 * 383 2100 868 1145 10343 1362 1321
+
+F 29 * 6038 6536 6581 2269 6488 3582 4629 6464 3569 * * * * * * 5460 2543 4510 1799 29
+ 16 6464 * 2000 415 * 0 10337 1000 1036
+
+E 30 3818 * 3029 1617 * 6488 6626 5011 3666 * * 4324 * 3485 4148 5291 3398 4898 * * 30
+ 15 6581 * 1000 1000 * 0 10337 1060 1036
+
+E 31 4362 5649 3943 3545 3724 5492 5772 3677 4726 2675 5527 5734 6644 4753 5749 4740 3797 2896 6665 4950 31
+ 0 * * * * * 0 10337 0 1036
+
+K 32 4598 6374 4010 3581 6751 6713 3749 3746 3453 5670 * 5688 * 5784 3475 3826 3274 2407 6941 5368 32
+ 11 * 7000 * * * 0 10337 0 1036
+
+F 33 3982 * 4082 3918 5100 5590 5708 4299 4955 3669 6683 3817 3125 5588 3308 6592 3626 3770 5071 3850 33
+ 27 5776 * 0 * * 0 10343 1139 1227
+
+I 34 3525 6625 * 5046 4201 6702 6506 2597 * 3187 3900 5113 5618 6561 4648 4644 5488 2037 * 4320 34
+ 32 6465 6557 3170 170 * 0 10343 1000 1227
+
+Q 35 3658 5556 1940 5405 * 4978 6647 5674 5581 5552 6735 3175 3310 5228 4382 3123 4025 5646 6579 6698 35
+ 111 5426 4298 2574 265 * 0 10320 1240 1410
+
+S 36 4015 6476 4994 6496 3436 4553 5689 3423 5410 2804 3350 4986 2706 * 4475 4455 6524 4605 5492 5478 36
+ 587 2194 3111 2094 385 3051 186 10215 4400 2271
+
+P 37 3161 * 3980 4364 6349 3079 4646 6374 3761 3854 * 5364 3136 5335 4054 3245 4117 * 4765 5164 37
+ 591 1700 5136 2274 334 629 1501 10017 5096 3686
+
+E 38 3004 6225 2685 2426 6424 4479 6240 * 3636 6362 * 4206 3346 4370 5634 4310 3965 6626 6319 * 38
+ 145 3968 4978 1476 643 * 0 10188 1893 2327
+
+D 39 3576 6217 2617 2986 6440 3169 4780 6682 5306 3935 * 4862 4495 4450 6499 3387 5440 4697 4716 5436 39
+ 208 3903 3886 2954 199 1338 726 10168 1832 2767
+
+L 40 5403 * 4466 4824 2285 6278 6093 4867 4379 3113 5434 * 4942 * 5056 5570 5297 4837 2477 3079 40
+ 79 6370 4595 1000 1000 1703 529 10168 1036 3034
+
+E 41 4374 * 6570 3252 3593 4794 5447 4837 3426 2546 5155 6370 3558 5959 4808 3644 4085 4194 * 5335 41
+ 33 6485 6485 0 * 778 1263 10124 1000 2958
+
+K 42 2352 * 3423 3644 * 4453 5494 5913 2650 5592 6541 3954 4589 3723 3864 4011 6971 4833 * * 42
+ 94 5573 4570 4955 47 1706 528 10244 1161 1926
+
+L 43 3431 6484 * 4940 4599 4900 4521 2556 4497 2119 4481 6294 5491 5463 5422 6306 5063 3199 * 5410 43
+ 105 5013 4662 764 1282 1969 426 10230 1367 2323
+
+K 44 5389 6434 4475 4076 4921 4434 6251 5102 2515 4893 * 1973 6614 5717 4009 3180 5567 5064 6420 6486 44
+ 1185 4945 922 1479 641 * 0 10157 1347 2589
+
+K 45 3800 * 3670 3487 * * 5381 * 3133 3841 * * 2488 4366 3465 3773 3114 4416 * * 45
+ 527 3851 2078 1375 703 5937 24 8842 1348 7766
+
+D 46 3577 * 2752 3145 * 3514 * 4055 4093 4890 * 4099 2501 4970 5085 4915 4164 * 5086 * 46
+ 689 2061 2835 1072 931 2799 224 8376 2295 8270
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+ 63 4545 * 1000 1000 * * 10334 1515 0
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+P 205 5167 * * 4420 * 4273 4139 * 3302 2663 4233 * 1332 4187 * * 4254 * * * 205
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+Q 211 3393 * * * 2386 3494 * * * 3455 * * * 3393 * * 3372 4209 * 1797 211
+ 0 * * * * * * 5233 0 0
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+I 212 3365 * * 2617 * 3184 * 3182 2236 3318 * 3227 * * * 3316 * * * * 212
+ 0 * * * * * * 4950 0 0
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+E 213 * * 2661 2425 * 2638 * * 2606 * * 2635 2558 * * * * * * * 213
+ 0 * * * * * * 3814 0 0
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+E 214 * * * 1279 * 2328 2372 * * * * * * * * * * * * 2354 214
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+A 215 1271 2373 * * * * * * * * * * * * * * * 2372 * 2328 215
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+
+R 216 * * 1628 * * * * * * 1665 * * * * 1470 * * * * * 216
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+K 217 * * * * * 1628 * * 564 * * * * * * * * * * * 217
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+V 218 * * * * * 1081 * * * * * * * * * * * 923 * * 218
+ 0 * * * * * * 1788 0 0
+
+F 219 * * * * 0 * * * * * * * * * * * * * * * 219
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+K 220 * * * * * * * * 923 * * 1081 * * * * * * * * 220
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+F 221 * * * * 0 * * * * * * * * * * * * * * * 221
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 2a3d9802bfcbb4c8a6063b33f02f6538
+FAM
+FILE 2a3d9802bfcbb4c8a6063b33f02f6538
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:04:17 2013
+LENG 132 match states, 132 columns in multiple alignment
+FILT 111 out of 603 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCEEEEECC
+CCCEEEEEEECCCCHHHHHHCHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9875465111405768999945799848999998164684465776641879999998632676897888999987045204899789848888999959
+99893617853504998740348865223109
+>Consensus
+xxxxxxxxxxmIqxxTxlxVxDNSGakxvxcIxvxxxxgxxxrxxxaxvGDxIxvsVkkxxxxxkgxvxxAvIVrtkkxxxRxdGxxixFxxNaxVLinx
+kxxpxGtrIxGpvxxElrxkxxkixslaxxii
+>2a3d9802bfcbb4c8a6063b33f02f6538
+MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDE
+NEDPRGTELKGPIAREVAQRFGSVASAATMIV
+>gi|301353215|ref|YP_003795212.1| ribosomal protein L14 [Proteromonas lacertae]gi|301353235|ref|YP_003795232.1| ribosomal protein L14 [Proteromonas lacertae]gi|290573163|gb|ADD46350.1| ribosomal protein L14 [Proteromonas lacertae]gi|290573183|gb|ADD46370.1| ribosomal protein L14 [Proteromonas lacertae]
+----------MIQMNTILKVADNSGAKTVFCFKFPN--KLKHN--ATFFNEKAKVSIRSLRKRGslkikKGDIYTALVLRQKINLRRFNGSFIKFSNNSV
+ILFDPKKdnTPLGTRIFGIVNKELRLKkYLKIISLASCLI
+>gi|119614253|gb|EAW93847.1| hCG2041309 [Homo sapiens]
+-------------------------------------------------hGDG--HSQERQTRAQKKGTSSSGHLTTKVIW-RKDGVFLYFEGNAGVIIK
+NKDEMKGSAITGPVAKECADLWPRIAFNTGSIA
+>gi|260076070|gb|ACX30948.1| ribosomal protein L14 [Euplotes minuta]
+-----------IQRLTWLKVADSSQAQWLKTFHL--YGGFSRAV--SAVGDLVRGSVRVIQA--ipdpykgftvrrinKGRILAGIIIRQTYKAQLKSTT
+TVQAKTNGVVILKDDRSVLIKHVVGPCFSLL---------------
+>gi|32563935|ref|NP_495527.2| hypothetical protein F45E12.5 [Caenorhabditis elegans]gi|24418262|gb|AAA68795.2| Hypothetical protein F45E12.5b [Caenorhabditis elegans]
+-------PSMGIHRRTRLNVVDNSAlgkeadttGKLPYCIHVYKQGRRAKHMPHAELGDKILVAI-------RGQMRKAYVVGANThVHYRKHGVP-VTD
+QNMIVLLDEEGNPLGNRITAPIPTKLMAnrgnvQFSKVLALANKFI
+>gi|114329853|ref|YP_740757.1| ribosomal protein L14 [Tetrahymena malaccensis]gi|114150086|gb|ABI51666.1| ribosomal protein L14 [Tetrahymena malaccensis]
+----------MVQKETNLKPIDKCGVWSVRVFHLYG--GSFRK--QSYISNFVKVSVKKTRPNNwvpKKTKLKSIIVTGKNEIKKIDGSYIKFRSLNTVL
+LKKRLTPKGKILMGPVSVSLKRkKFL----------
+>gi|49147208|ref|YP_025801.1| ribosomal protein L14 [Pseudendoclonium akinetum]gi|33439223|gb|AAQ18760.1| ribosomal protein L14 [Pseudendoclonium akinetum]
+----------MLISRSKLIVKDNSGIILAQCIQVQRSKKSQK---PCKIGDFLKATVKKGSAKSqtqrlkkltgSERLRNLVVIQTKSALRRLDGGAIRF
+NANCGITVNERKLPLFKRVTSVVPFELKKKCNPVLNLARAVI
+>gi|1171600|emb|CAA64584.1| rpl14 [Plasmodium falciparum]
+----------MIYINSILDVIDNSGIFKFKYICTLN------KYKNPKYGDIVIGVVYSLYNNnlyKKSDKCKGILVQQKKFLNFKKYYSIKFNKNAVII
+INNKLNFVGTKSNNYISK-----------------
+>gi|224140519|ref|XP_002323630.1| predicted protein [Populus trichocarpa]gi|222868260|gb|EEF05391.1| predicted protein [Populus trichocarpa]
+---------------THLNVAYNSEVRELMF--------SNRR--YIYIGDVIIIVIKKVVPNSpleRFEVIRAVIMHTLKELKCDNSMIKRYNDNAT--
+-----------------------------------
+>gi|10802917|gb|AAG23665.1|AF288091_10 ribosomal protein L14 [Thraustochytrium aureum]
+----------MVYPETNVFIVDNSNVKEVRCVHVYN--QSSNN--FGSTGSFIIGVITKLKKNnlkstqKRGDLVKVLIVFTRKEKNniKGSGIFVKAPK
+NFGILFDKK-IAVGSRCKGVLPIKIKP-------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 3052 * * 3994 * * * * * * 981 * 4164 * 2844 * * 3121 * * 1
+ 0 * * * * * * 2875 0 0
+
+E 2 * * * 3128 * * * 4106 643 4134 * 4000 * * 3885 * * * * * 2
+ 0 * * * * * * 2875 0 0
+
+A 3 3115 * * 3121 * 2318 * * 2896 4106 * * 2391 * 3885 * 4164 4000 * * 3
+ 0 * * * * * * 2875 0 0
+
+L 4 3835 * * * 2846 * * 1625 2817 4459 * * * * 3461 4515 4584 3279 * * 4
+ 0 * * * * * * 3004 0 0
+
+G 5 4373 * * * * 1839 * * 3835 * * * * 4459 2060 2160 4584 4275 * * 5
+ 163 3230 * 1826 478 * * 3004 1077 0
+
+A 6 2859 4633 * 4429 2346 2888 * * * * * * 3655 * * 2478 4486 4706 * 3297 6
+ 0 * * * * * * 3278 0 0
+
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+
+V 8 5044 * * 5140 4039 * * 1799 * 4119 4979 * 3903 * 4006 * 5064 1776 * 4243 8
+ 0 * * * * * * 3858 0 0
+
+T 9 * 4830 5172 * * * * 5706 3870 4242 * * 3644 4573 3193 1440 2575 5107 * * 9
+ 0 * * * * * * 4001 0 0
+
+Q 10 4281 4651 * * * * * * 2657 2528 4454 2911 5072 5382 1899 * * 5298 * 4295 10
+ 0 * * * * * * 4060 0 0
+
+G 11 4000 6015 * * 5761 2320 6546 * 6216 * 839 * * 6378 * 4697 4503 7141 5784 * 11
+ 0 * * * * * * 5096 0 0
+
+L 12 * 6469 * * 5657 * * 717 * 1844 * * * * * * 5140 4217 * * 12
+ 0 * * 0 * * * 5372 1022 0
+
+E 13 * * 6073 7251 5602 4878 5279 3795 5197 4632 6049 5636 3670 1130 4662 5781 5832 5782 6126 3642 13
+ 12 6894 * 0 * * * 5396 1000 0
+
+K 14 4945 6563 7681 6352 6284 * 5585 4237 2065 2984 4398 5567 3889 4858 4380 4070 4359 2635 * * 14
+ 0 * * * * * * 5420 0 0
+
+G 15 * 5342 * 3151 5935 1604 * * 3491 3815 5876 3720 * 2499 4367 5798 6772 * * 6372 15
+ 0 * * * * * * 5420 0 0
+
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+
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+ 25 5871 * 2000 415 * * 5450 1084 0
+
+I 18 6073 7302 * * 3971 * * 3541 * 712 4566 * * * * 5437 * 2705 * * 18
+ 0 * * * * * * 5450 0 0
+
+T 19 6060 * 4397 5186 5104 5828 5560 5933 1894 7393 * 2092 6644 4485 3540 6142 3445 4792 * 4900 19
+ 0 * * * * * * 5450 0 0
+
+C 20 * 2476 * * * * * 2283 * 6783 * * 6044 * 6064 * 7353 812 * * 20
+ 0 * * * * * * 5450 0 0
+
+A 21 1423 6189 * * * 4583 * 2844 5933 4466 6898 6674 * * * 4054 3664 2406 * 5342 21
+ 0 * * * * * * 5450 0 0
+
+D 22 * * 54 * * * * * * * * * * * * * 5437 * * 6201 22
+ 0 * * * * * * 5450 0 0
+
+N 23 * * * * * * * * 6044 * * 151 * * * 5123 4166 * * * 23
+ 0 * * * * * * 5450 0 0
+
+T 24 * 4783 * * * * * * * * * * * 5437 * 461 2224 * * * 24
+ 16 6481 * 3000 193 * * 5450 1010 0
+
+G 25 5530 * 5693 4214 * 279 * * 6552 * * 6131 * 6184 * 5341 5812 * * * 25
+ 84 4142 * 2686 244 * * 5450 1285 0
+
+A 26 812 * * * * 3285 * 3578 * 4889 * * 6032 * * 6510 6064 2753 * 5597 26
+ 37 5322 * 2257 339 * * 5450 1096 0
+
+R 27 6879 6032 * * 5035 * * 4344 1016 5005 * 5309 * 4401 2433 6588 4471 6632 4998 5934 27
+ 0 * * * * * * 5450 0 0
+
+E 28 4982 * * 3273 4884 * 5847 3042 2713 2364 5874 4194 4871 4764 5308 6045 4485 3828 4957 6039 28
+ 0 * * * * * * 5452 0 0
+
+L 29 2420 * * * 5913 3962 * 3425 * 2590 * * 3791 * * * 5847 1383 * * 29
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+
+K 30 6851 4343 * 3416 5279 5898 * * 2194 3845 3378 5954 * 3089 2521 5137 * 5564 * 3963 30
+ 0 * * * * * * 5452 0 0
+
+V 31 6045 885 * * 5372 * * 2302 * 5196 * * * * * 5874 4877 3042 * 5913 31
+ 20 * 6202 * * * * 5452 0 0
+
+I 32 5838 * * * 3055 * * 416 * 4653 * * * * * * * 3778 * * 32
+ 0 * * * * * 0 5434 0 1040
+
+S 33 6296 5293 7036 * * 2782 2912 * 1884 6911 6768 4901 * 2804 3759 2962 6864 * * * 33
+ 12 * 6861 * * * 0 5434 0 1040
+
+V 34 5254 * * * 4998 * * 2556 5584 3607 6157 3979 * * * 5858 4432 966 * 5916 34
+ 24 * 5893 * * * 0 5427 0 1084
+
+H 35 * 6468 5455 * 4975 5169 5378 3859 3128 1558 6146 5108 4312 5922 5290 6252 * 6902 * 2306 35
+ 196 5847 3187 945 1057 * 0 5398 1042 1163
+
+G 36 * * 5578 5265 * 1562 6885 * 2525 * * 2810 4466 4706 2981 5199 4263 * * * 36
+ 1149 * 865 * * 3376 146 5342 0 1743
+
+Y 37 * * * * 6076 * 4343 3473 2323 5676 * * 5077 4047 4288 3350 5229 4818 4899 1778 37
+ 232 3911 3611 1544 606 * 0 4552 1052 3621
+
+S 38 5237 * * * 4665 2791 3082 * 1398 * * 5180 * 3835 4475 3039 5164 * * * 38
+ 0 * * * * 374 2129 4470 0 3718
+
+G 39 4543 * 6335 * * 907 5947 * 2853 * * 4824 7204 5998 4908 3294 3966 * * * 39
+ 120 * 3646 * * 1507 625 5306 0 1673
+
+T 40 4826 * * * 3592 5413 5452 * 3094 6503 * 3725 6582 5051 2222 2339 3862 4048 5244 5408 40
+ 105 * 3837 * * 1424 673 5335 0 1793
+
+K 41 4381 * * * 4758 4701 4853 * 2173 3099 * 3056 4824 3774 2778 3903 4982 6940 6940 6124 41
+ 21 * 6124 * * 950 1052 5324 0 1768
+
+N 42 4636 7171 4501 * * 3414 5244 7223 2060 * * 2820 5920 4622 1852 5176 5386 * * 6092 42
+ 56 * 4719 * * 2479 285 5370 0 1411
+
+R 43 5217 * 6335 * 5196 5774 4916 6987 2078 * 5934 4545 * 5942 1079 4195 5436 6533 * * 43
+ 1335 6211 761 0 * * 0 5372 1010 1516
+
+H 44 4683 * * * 5876 4341 4177 3161 * 1875 4110 * * 4450 5063 5259 5377 4635 * 2114 44
+ 480 * 1822 * * * 0 4582 0 3753
+
+P 45 2946 4165 5463 * * 4137 * * 2802 * * 3241 1041 * * * * * * * 45
+ 0 * * * * 385 2094 4104 0 4070
+
+K 46 2875 7110 * * 3892 4383 4527 4549 3977 4164 * 3734 4698 * 5533 4277 2898 3795 6276 2946 46
+ 0 * * * * 484 1810 5370 0 1802
+
+A 47 765 5285 * * * 2545 * 5421 * 5256 6991 * 5873 * * 4209 5057 4153 * * 47
+ 0 * * * * * 0 5418 0 1201
+
+G 48 4077 * 6649 4806 5138 2335 7189 7254 2672 * * 4339 5919 6476 3457 2500 3231 5267 * 5598 48
+ 0 * * * * 1812 484 5418 0 1201
+
+L 49 5311 6397 * * 4601 * * 1742 * 3097 * * 5157 6488 * 5362 4454 1396 * 5891 49
+ 0 * * 0 * 0 * 5410 1037 1130
+
+G 50 5249 * * * * 171 * * * * * 4656 6145 * * 6069 5901 * * * 50
+ 0 * * * * * * 5482 0 0
+
+D 51 6612 6798 399 4957 6145 * 6141 * * 5878 * 4311 * 6587 * 4043 6660 * * 6183 51
+ 0 * * * * * * 5482 0 0
+
+K 52 5339 * * 5643 3397 6305 6121 2577 3200 2714 3906 * * 6696 4441 * 3284 2539 * 7076 52
+ 18 * 6305 * * * * 5482 0 0
+
+I 53 4750 * * * 5394 * * 993 * 5211 6041 * * * * * * 1343 * * 53
+ 0 * * * * * 0 5458 0 1037
+
+T 54 * * * * 6118 * * 2788 2470 2451 3658 * * * 3707 7055 3572 2120 * * 54
+ 0 * * * * 0 * 5458 0 1037
+
+V 55 2717 4907 * * * 3264 4464 3773 * 4569 6183 * * * * * 7167 918 * * 55
+ 0 * * * * * * 5482 0 0
+
+S 56 3104 * * * * * * 5901 6108 * * * * * * 1101 2470 2281 * * 56
+ 0 * * * * * * 5482 0 0
+
+V 57 5802 6664 * * * * * 1657 * 6928 * * * 6305 * * 5857 697 * * 57
+ 17 * 6446 * * * * 5482 0 0
+
+T 58 * * * 6303 6619 5871 * * 776 3925 * 5995 * 3099 3031 * 5057 6770 * 5939 58
+ 32 * 5495 * * * 0 5462 0 1015
+
+K 59 3857 * 3935 2767 * 4289 * * 1330 * * 7413 * 6319 3479 3284 5026 6183 * 6092 59
+ 50 5545 6301 1256 783 * 0 5422 1060 1142
+
+G 60 2552 5337 * 5997 * 2263 * 3241 4035 2768 5264 * * 4656 * 3935 4027 3741 * * 60
+ 0 * * * * * 0 5399 0 1240
+
+T 61 6445 * 5263 6706 * * 5011 3974 1978 4935 5343 4529 6680 7228 2528 3391 3331 3644 * 4667 61
+ 30 * 5605 * * * 0 5399 0 1240
+
+P 62 3042 * * * 5334 5558 * 5629 3586 5015 6969 4914 1352 4393 3522 3640 5001 * * 5702 62
+ 219 4486 3380 2994 194 1565 595 5397 1216 1370
+
+E 63 5053 * 3542 2743 7382 5239 4905 4773 2681 5667 7170 3104 * 3191 2980 4836 5002 5020 * * 63
+ 307 2563 5487 2902 207 * 0 5294 1677 1690
+
+M 64 5342 4814 * * 4728 3884 5132 4968 2581 2931 3670 4840 5101 4298 4884 2939 4427 5345 * 4419 64
+ 1100 907 * 2308 325 816 1211 5279 3397 1783
+
+R 65 5306 * * 6311 * * * 5295 906 * 5810 * * 6226 1810 4762 6329 6729 * 5168 65
+ 39 6329 6139 1000 1000 1558 599 5418 1009 1319
+
+R 66 6643 * * 5970 6090 970 5224 * 2305 * * 5973 * * 4300 2709 * * * * 66
+ 0 * * * * * 0 5439 0 1251
+
+Q 67 * * 2641 2321 * 5340 6029 6712 2469 * 7209 6681 * 2109 4326 4135 4564 6377 * * 67
+ 11 7007 * 1000 1000 * 0 5439 1000 1251
+
+V 68 * 5940 * * * * * 1825 3503 3097 5001 * 5130 * * * 5108 1295 * * 68
+ 0 * * * * 1765 503 5439 0 1251
+
+L 69 * 3477 * 7002 3588 5967 3019 4973 4769 3383 4993 5696 5989 7459 3395 4680 6375 2397 * 3220 69
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+
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+ 14 * 6727 * * 0 * 5438 0 1076
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+R 120 5222 6431 3999 6970 * 3624 * * 1238 4293 * 4077 * 6220 2274 4901 6433 6563 * * 120
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+S 126 2704 6258 * * 5228 6403 * * 4582 5633 * 4100 5334 6232 5734 877 5584 5487 * 5044 126
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+A 127 4439 * * * * * 6474 2652 * 848 4217 4574 * 6097 5266 4176 5721 5852 * * 127
+ 0 * * * * * * 5138 0 0
+
+A 128 689 6428 * * * 4816 * 6097 * * * * * * * 2041 4234 5521 * * 128
+ 0 * * * * * * 5138 0 0
+
+T 129 4123 * 6000 5460 * 3186 6504 * 2963 4815 * 4656 2511 4354 3746 2287 4000 6196 * * 129
+ 0 * * * * * * 5104 0 0
+
+M 130 3883 6283 5016 2985 6058 3640 5705 3939 3206 6761 4699 4334 * 5497 3671 2916 4427 4406 * 4321 130
+ 0 * * * * * * 5068 0 0
+
+I 131 6876 6767 * * 3016 * * 1380 * 3965 * 4559 * 6608 * 5527 4697 1878 * 5287 131
+ 0 * * 2000 415 * * 4984 1022 0
+
+V 132 3546 * * * 3606 6514 6789 1568 * 2861 6266 6066 * * * * * 1768 5982 * 132
+ 0 * * 0 * * * 4908 0 0
+
+//
+�HHsearch 1.5
+NAME 2aaa64efe58cc449ac3f69c82cc966f0
+FAM
+FILE 2aaa64efe58cc449ac3f69c82cc966f0
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:08:35 2013
+LENG 156 match states, 156 columns in multiple alignment
+FILT 113 out of 646 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEECHHHHHHHH
+HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9998888757789996437899999999988563199999999999999998748858999999999658808999971198899995771799999999
+99999999756999889999999999980873777689999999999685620679
+>Consensus
+mxrxxxxxxxxxxxdxxxxxxxvxkxinxlmkxGKKxxAxxixxxalxxixxxxxxnpixilxxAixnxxPxxxvxxxrxggxxyqvPvxixxxrrxxlA
+irWiixaaxxrxxxxxxxxLaxEiixaxxxxgxaikkKxexhkxAxaNRaxxxxRw
+>2aaa64efe58cc449ac3f69c82cc966f0
+MARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLA
+LRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
+>gi|87043010|ref|YP_492624.1| ribosomal protein S7 [Dictyostelium citrinum]gi|122074018|sp|Q2LCR8.1|RT07_DICCI RecName: Full=Ribosomal protein S7, mitochondrial; Short=MRP-S7; Short=S7mtgi|84682110|gb|ABC60375.1| ribosomal protein S7 [Dictyostelium citrinum]
+----------------------EKRLINAFMRKGNYIKAERIYFTVLNRLTTLGIQNPYKFLRETLIKMTPIMGVVKKKRGVKEKIYPKYLEPRMGEKYA
+IKWLLKKLEKSKGDLLINNIVDEFLKASKDQGEVLKEKWALY--------------
+>gi|119623074|gb|EAX02669.1| hCG18724, isoform CRA_a [Homo sapiens]
+----------------------------------------------------ISLQDYIAVkekytKQEPSAGSGecqhqmwPWEDSTYIEQAETVRQQD
+VDMSPLYHVNQAIWLLYTGTSEaafQNIKTITEYLADKLISIAKNSSnyYAIE-KNNLELMAKSNC-------
+>gi|336378070|gb|EGO19229.1| hypothetical protein SERLADRAFT_479598 [Serpula lacrymans var. lacrymans S7.9]
+-----------------PEDPLLQYLTSALLHHGHRAKAARMTSLTLLHIHAFTRAPPLPILREAIMAAAPAVRCMSHKHGSKNVAKPIALGEKQRVRTA
+VQMIIKASEKKNGKTIAERLAREMIAVVQGDSRALEERETIHRFAMVNRGNTLL--
+>gi|11465896|ref|NP_066445.1| ribosomal protein S7 [Ochromonas danica]gi|10505229|gb|AAG18411.1|AF287134_36 ribosomal protein S7 [Ochromonas danica]
+---------------------IYKNLLGNIIKRGKKVKAKLILNSSIEIVSSRLNSNSDILLQRLAQKIGSLVELRKIKIRKNVHIVPFPVKSYRRKFLF
+SKELVSYIFSdKKKTNSVEKLNFNIFSYLIKKGSNYNKKDATLKEVIINRSNIHYRW
+>gi|324309737|gb|ADY18518.1| ribosomal protein S7 [Phaeodactylum tricornutum]
+---------------------IKNKLTNHLTTSGKKTKGEKILFKSVKTIQRQSRKQVNSLIKLAIFSSSPVFKLHiltqKKRKKKKSKEIPAFmQSPQA
+RVSLSIKLIILSIRKRKLNNFSIGLGKEILLNANCKGETIKIKNKLQEQVFAKKHLLkYYRW
+>gi|319412297|gb|ADV41834.1| ribosomal protein S7 [Bigelowiella natans]
+-------------HDPLYKSWFFRKIIGGLPLKS-RSRNKALFRRALARLRHEhHSLDTPFALVWSIHKIRPLFWIRTVKKGKREYKIPFKLTPRGQYRR
+ALYWVVKSFRGRTEPRLETRLFLELKDLLDGKSKVFSWRDTLYNEVGRNRHNANFRW
+>gi|301500888|ref|YP_003795300.1| ribosomal protein S7 [Chromera velia]gi|300069434|gb|ADJ66542.1| ribosomal protein S7 [Chromera velia]
+------------------------FMVNRIQRRGCNSLARKIWSKTLLKVEKQLNRSIKDILEEIFRFLIPPVGITFLKKANQVTELPVIQPYYRAVPMA
+INWILEAARKKRGVKFVNALVTEFVDLYNFTGAASSQRNKYLR-------------
+>gi|11467069|ref|NP_042545.1| ribosomal protein S7 [Acanthamoeba castellanii]gi|1173306|sp|P46756.1|RT07_ACACA RecName: Full=Ribosomal protein S7, mitochondrialgi|562050|gb|AAD11838.1| ribosomal protein S7 [Acanthamoeba castellanii]
+---------------------------QGLTSRGKKKLSISIFKTLFLLLKFKYKRKFIDCYLQFLEKVRPLIYYKVMFIGGKKYKIPTLMPISKSYSTS
+IRWLINNADKR---DIATSLFSQINISLKNEGSLIKYRKEYHSASFENKSYIRF--
+>gi|301353213|ref|YP_003795210.1| hypothetical protein PROLAC_032 [Proteromonas lacertae]gi|301353237|ref|YP_003795234.1| hypothetical protein PROLAC_057 [Proteromonas lacertae]gi|290573161|gb|ADD46348.1| hypothetical protein PROLAC_032 [Proteromonas lacertae]gi|290573185|gb|ADD46372.1| hypothetical protein PROLAC_057 [Proteromonas lacertae]
+--------------------YILILFLNYLNKTGNKVLAESIIYRLLFLLKKTsltknsilfsQQESSLCILNQAFINVMPSFKLILKNkkeytvvsfqd
+likdhsillnkqqftdsknsnnknsfdLLNIITVIPVPLNLNTRCLKGCTFLFKSAVLhKNSFDFASKLYEELLLAYYSCGRSVYLKNEIDKIACIHRSN
+IKF--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 128 * * * * * 4521 * * 4596 1
+ 0 * * * * * * 4131 0 0
+
+A 2 3044 * * 4596 * 4973 * * * * * 4185 3334 * 4004 763 * * * * 2
+ 0 * * * * * * 4131 0 0
+
+R 3 * * * * * * * * 2883 * * * * * 383 4185 4544 * * * 3
+ 0 * * * * * * 4131 0 0
+
+R 4 * * * 4185 * 5230 * * 1607 * * * * * 959 * 4596 4873 * * 4
+ 200 * 2947 * * * * 4131 0 0
+
+R 5 4931 3427 * * 4767 2472 * * 1890 * * 3651 * * 2317 3643 5205 * * * 5
+ 163 3228 * 212 2869 0 * 3904 1247 1210
+
+R 6 4730 4596 * * * 5107 4540 4953 3121 3273 * 4185 * * 2298 3721 2441 4667 4624 * 6
+ 0 * * * * * * 4131 0 0
+
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+ 198 5069 3343 1000 1000 * * 4131 1000 0
+
+E 8 * * * 4155 4488 * * 5034 1125 * * 4944 4423 4384 3525 3469 5091 3704 * * 8
+ 0 * * * * 0 * 3936 0 1165
+
+V 9 5049 * * 3645 * * * * 1041 4806 * 5169 5291 4299 2570 * 3793 5416 * * 9
+ 103 3854 * 0 * * * 4260 1118 0
+
+R 10 3652 * * * * * * * 2178 * * 4299 * * 858 * 3370 * * * 10
+ 59 * 4638 * * * * 4260 0 0
+
+Q 11 4764 * * 3314 4967 3399 5094 3293 2997 5408 * 3599 5034 4178 4108 4632 3555 3263 * * 11
+ 0 * * * * * 0 4214 0 1044
+
+L 12 3494 4842 * 5074 5084 5159 * 2047 * 1984 * * 5073 * 4760 4768 4351 3191 * 4938 12
+ 0 * * 3235 162 * 0 4387 1109 1044
+
+Q 13 3802 * * 4231 4248 * * 4259 2593 1789 4082 * 4098 5620 * 3916 * 3170 * * 13
+ 296 5307 2642 0 * 0 * 4500 1000 1044
+
+P 14 3237 * * 5760 5653 5542 4426 * 4769 * * 3427 1637 4461 * 4070 2273 * * 5350 14
+ 67 4468 * 2193 356 510 1748 5089 1057 1312
+
+D 15 * 4142 794 4100 * 6720 4624 4902 5676 4318 5528 * 4105 * * 4280 * * * 5396 15
+ 0 * * * * * 0 5316 0 1043
+
+L 16 4840 * 4455 4706 * 5871 * 6321 * 6591 * 5649 1196 5011 5539 1803 6063 5019 * * 16
+ 0 * * * * * 0 5372 0 1043
+
+V 17 * * 4747 4779 3705 5871 * 2170 2750 2739 5239 * 4975 3901 6163 * 4557 2940 * * 17
+ 117 5839 4048 0 * * 0 5372 1000 1043
+
+Y 18 3875 5988 * * 1601 * * * * 4713 * 5330 4555 4996 5655 5617 * * * 1288 18
+ 28 5710 * 1750 509 636 1487 5397 1109 1250
+
+G 19 * 5638 4798 3101 6089 3690 * * 3696 * * 2064 * 3476 2856 3834 * 6029 * 3246 19
+ 22 6065 * 0 * * 0 5668 1000 1043
+
+D 20 6145 4831 1303 * * 5340 4859 4473 4502 5612 5096 4065 * 6277 6301 1932 * * * * 20
+ 0 * * * * * 0 5893 0 1043
+
+V 21 4463 * 6396 3461 5886 * 5676 5528 3861 3941 6377 4850 1565 5802 4499 4472 4880 4445 5256 4013 21
+ 18 6343 * 3170 170 * 0 6103 1006 1043
+
+L 22 6697 * 6655 5793 3628 * * 2080 6635 1555 4939 * * 5839 6796 6899 4339 2578 * 6615 22
+ 0 * * * * 0 * 6419 0 1043
+
+V 23 5127 * * 4451 4994 * * 2391 4742 2244 5586 * * 6754 * 6655 6374 1444 * 4808 23
+ 19 * 6231 * * * * 6468 0 0
+
+T 24 3263 6837 4728 2626 * 5427 3698 6002 3107 4865 5709 3969 * 3812 4016 2801 4304 * * 6508 24
+ 20 6172 * 1000 1000 0 * 6505 1010 1020
+
+A 25 7567 * * 6524 4741 * 4419 7268 1314 4402 4184 5018 * 4422 2330 5137 4288 * * 4936 25
+ 0 * * * * * * 6588 0 0
+
+F 26 7042 6680 * * 1477 * * 3277 * 1368 4517 * * * * * 6983 3861 * 6343 26
+ 0 * * * * * * 6627 0 0
+
+I 27 4866 * * 5703 * 6767 * 1433 5170 3209 5900 * * * * 5683 2623 2106 * * 27
+ 0 * * * * * * 6627 0 0
+
+N 28 6503 6343 5983 * * 3499 6734 * 4532 6100 * 751 * 5408 3734 3617 5358 7283 * * 28
+ 0 * * * * * * 6703 0 0
+
+K 29 4783 4421 * * 4046 4967 3420 4602 3669 2841 3435 4055 * 5343 2939 4598 5169 3967 * 5013 29
+ 0 * * * * * * 6703 0 0
+
+I 30 * 4538 * * 4032 * * 2155 * 1022 3338 * * * * * * 3643 * * 30
+ 0 * * * * * * 6703 0 0
+
+M 31 * 6411 * * 6558 * * 4070 * 2667 945 5634 4917 4478 * * 3040 * * 5526 31
+ 0 * * * * * * 6713 0 0
+
+R 32 * * 6890 * 5831 * 4456 4143 1354 3684 5593 5434 * 6006 2341 4294 4630 4402 7070 * 32
+ 47 4977 * 3014 191 * * 6713 1148 0
+
+D 33 4368 * 2643 7313 * 4259 2890 * 2160 * * 2945 6451 5046 3632 3713 4776 * * 6735 33
+ 103 3859 * 2525 275 * * 6713 1399 0
+
+G 34 * * * * * 47 * * * * * * * * * 5837 * * 6083 * 34
+ 56 5618 5837 1585 585 * * 6748 1073 0
+
+K 35 6395 6236 4643 5263 * * 4642 * 620 6136 * 2956 * 6645 4333 6017 * * * * 35
+ 0 * * * * 0 * 6693 0 1052
+
+K 36 * * * * 5289 6722 * * 529 6649 * 6250 * 5360 2530 * * 5977 * 4812 36
+ 0 * * * * * * 6748 0 0
+
+N 37 2946 * 6997 3671 6125 4700 4649 3992 4237 5628 * 4264 * 3441 4577 2079 3384 4768 * * 37
+ 0 * * * * * * 6748 0 0
+
+L 38 5865 * * * * * 6231 4424 1687 1891 6125 5219 * 7264 3171 5612 4498 3068 * * 38
+ 30 5618 * 3585 126 * * 6748 1073 0
+
+A 39 539 6231 * * * 5510 * 5562 * 4972 * 5837 * * * 2651 5419 5410 * * 39
+ 0 * * * * * * 6748 0 0
+
+A 40 4318 * * 1869 5054 * 4694 3504 4298 5954 6822 5545 * 3184 2844 5014 5109 5485 5618 3834 40
+ 9 * 7319 * * * * 6748 0 0
+
+R 41 4447 * * 5321 * 4342 6810 6025 1655 5176 6781 3369 * 4939 2230 3246 4457 * * 7022 41
+ 0 * * * * * 0 6753 0 1000
+
+I 42 6226 * * * 5094 * 5443 1130 * 2169 4790 4831 * * * 5352 5034 3334 * 5076 42
+ 0 * * * * * 0 6753 0 1000
+
+F 43 * 4957 * * 2613 * * 3194 6227 1938 3426 * 6032 * * * 5141 2226 5096 4601 43
+ 0 * * * * * 0 6719 0 1000
+
+Y 44 5152 6087 5404 3998 3877 * 5014 5177 3506 4066 5237 3348 * 5308 3975 3334 4569 6482 * 2116 44
+ 0 * * * * * 0 6719 0 1000
+
+D 45 4722 * 3335 3492 * 3993 5332 5565 2204 4778 6818 3331 * 4248 2991 4033 4667 6845 * 5963 45
+ 0 * * * * * 0 6719 0 1000
+
+A 46 1335 * * * * * * 3743 * 3285 5065 6016 * * * 2883 2639 3557 * * 46
+ 0 * * * * * 0 6719 0 1000
+
+C 47 * 4383 * * 1856 7127 * 3504 * 1337 3062 * * * * * * 4230 * 6410 47
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+
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+
+//
+�HHsearch 1.5
+NAME 2b78356947507e56ed56d054e1215b8c
+FAM
+FILE 2b78356947507e56ed56d054e1215b8c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:10:25 2013
+LENG 120 match states, 120 columns in multiple alignment
+FILT 108 out of 1047 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCEEECCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEEC
+CCCCHHHHHHHHHHHHCCCC
+>ss_conf PSIPRED confidence values
+9977899839938899999985699299999899986899999999999999773088689999976668999998499853389999899178999953
+88999999999998655899
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxvvxfxxxxCxxCxxxxxxlxxxxxxxxxxxxxixxxxxdxxxxxxxxxxxxixxxPxxxxxxxgxxxxxxxxx
+gxxxxxxxxxxixxxxxxxx
+>2b78356947507e56ed56d054e1215b8c
+DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYT
+AGREADDIVNWLKKRTGPAA
+>gi|239636570|ref|ZP_04677572.1| thioredoxin [Staphylococcus warneri L37603]gi|239597925|gb|EEQ80420.1| thioredoxin [Staphylococcus warneri L37603]
+-----------SIEIDDVTENFGEEKHLIFGYTPTCGTCKVSE----RMLDIANEILK-LPVKKIDMNFHPKFSETHQIMSVPVLMLMNKD---------
+--------------------
+>gi|71020229|ref|XP_760345.1| hypothetical protein UM04198.1 [Ustilago maydis 521]gi|46099969|gb|EAK85202.1| hypothetical protein UM04198.1 [Ustilago maydis 521]
+----SSQGFIDVDTNE-fSQII-QVPrdyAVTALLTTttGGikC-pPCQVFQPE--feK-lAQQWNknkSVKSKNVFI--kaEFSRAQGVFARYQLQHAP
+VLYTFpAPtASNgspd--HVSFDfneRSFSAPDVADHLNKL-lN---
+>gi|313898805|ref|ZP_07832339.1| putative bacteriocin transport accessory protein [Clostridium sp. HGF2]gi|312956387|gb|EFR38021.1| putative bacteriocin transport accessory protein [Clostridium sp. HGF2]
+---DEPGRVENITVAKMQEMVDKKESFAIVFTQTTCSHCIEFKKMLDGYLL-----DHNVVLYDVVLDEAPASQRKSDLNtirktfpgmnETPSLYYVKE
+GK--LENLLEngdDGLTEEKFDSWVQRY-----
+>gi|256421245|ref|YP_003121898.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Chitinophaga pinensis DSM 2588]gi|256036153|gb|ACU59697.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Chitinophaga pinensis DSM 2588]
+DKPAPGFALRDLNGKKWSLKNLKGKVVVLNFWFVTCPPCIQEMPELNELTKDYQSKEVVFLAMTYNDKEevtdfledhtfdynllvdSHDTDQAYNVASW
+PVSFVIdKEGIVKFVVKGGQATIRQQLTKAIEQVL----
+>gi|317121579|ref|YP_004101582.1| hypothetical protein Tmar_0740 [Thermaerobacter marianensis DSM 12885]gi|315591559|gb|ADU50855.1| hypothetical protein Tmar_0740 [Thermaerobacter marianensis DSM 12885]
+------------TVADLERALRDPQPVMIFKHSTACPISARAYRAFRQFVARQpAAARYYLVQVIEQRPLSNEIARRLGVPhASPQVLLWHRGA-VRWHA
+SHGAITERALATALAAVRAP--
+>gi|302348009|ref|YP_003815647.1| Protein-disulfide oxidoreductase [Acidilobus saccharovorans 345-15]gi|302328421|gb|ADL18616.1| Protein-disulfide oxidoreductase [Acidilobus saccharovorans 345-15]
+------------LIKELKDTLAymVSPVTVDLFIDdASrCETCEDAYKLVKTIADASPVRDGKKMLQLRVFSKskpeDLEEFKRQNVERVPTVTLLGGV-
+----IRYTGTPAGEEIRGFIETIMR---
+>gi|70726027|ref|YP_252941.1| hypothetical protein SH1026 [Staphylococcus haemolyticus JCSC1435]gi|68446751|dbj|BAE04335.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
+------------SDDRINQLKDSSYSKVLVISEDWCGDAMMNLPILKRISES-----LQLEVRVFHRDEDTNLIDQYltnGtARSIPIFIFMNDQF--EQ
+VSVWGPRA-REAQEFVTQ------
+>gi|221059209|ref|XP_002260250.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]gi|193810323|emb|CAQ41517.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]
+------------NEEEYKKLFeeKNDILYIVDVYTKWCGPCLFTFEIINKIYKANFTFTESVKIVAV-CAQNIASLKNYDNNSKPFYIILKNGE--IIRQ
+IQGCNTPH-IFALIDEHL----
+>gi|123448520|ref|XP_001312989.1| hypothetical protein [Trichomonas vaginalis G3]gi|121894856|gb|EAY00060.1| hypothetical protein TVAG_196200 [Trichomonas vaginalis G3]
+DRREQVDVVIEMTDQNFQFKTSDGRPWVILVYQHYYDY-QSNKPFLEDLFQ---KTGLLFGIARMQISQSPKIVEKFGIRYSPQLVVYDSKT-NNHFLFN
+GEMKLGKVINFATRKFGADV
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+A 94 4688 * 4464 * * 3769 * 5300 2247 3056 4451 4330 4360 4489 3143 5531 3343 4534 * 5568 94
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+ 14 6719 * 0 * * 0 10915 1029 1738
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+I 108 5799 6760 * 5510 2803 * * 2677 6531 1844 3793 * * 6625 6537 5923 5557 2933 4993 3859 108
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+ 0 * * * * * * 10876 0 0
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+K 113 4212 * 3083 3081 * 4831 5119 6259 3914 3893 * 3466 * 2748 3741 3399 4512 4947 * 6156 113
+ 17 * 6375 0 * * * 10652 1000 0
+
+K 114 3783 * 3470 2371 * 6463 * * 2697 5242 5571 3283 5509 3233 3859 3564 5334 * * 5538 114
+ 0 * * 0 * 0 * 10501 1000 1000
+
+R 115 2747 6229 * 4638 4150 6290 3233 3205 4163 2467 * 3745 * * 4720 6360 5492 3941 5970 4355 115
+ 24 5918 * 0 * * * 10284 1000 0
+
+T 116 3785 3870 * 6151 4293 5873 5856 3627 4909 1717 3809 * 5053 * 4193 3740 3375 6176 * * 116
+ 0 * * * * * * 9981 0 0
+
+G 117 3410 * 3115 4414 * 2216 * * 3932 4449 * 3958 4311 5163 3067 4441 3471 * * 5720 117
+ 0 * * * * * * 9419 0 0
+
+P 118 3339 * 3172 3013 * 3219 * * 3392 4030 4789 * 1935 * 4774 3873 * * * * 118
+ 0 * * * * * * 8443 0 0
+
+A 119 2097 * 4188 4365 * * * 4197 * 4248 4460 3398 1674 4438 * * * 4163 * * 119
+ 0 * * * * * * 7340 0 0
+
+A 120 1671 * * 3911 * * * * * * * * * * * 3843 3809 1064 * * 120
+ 0 * * 0 * * * 6609 0 0
+
+//
+�HHsearch 1.5
+NAME 2b86eaed0dd0462632e7bb6e0a56ceb8
+FAM
+FILE 2b86eaed0dd0462632e7bb6e0a56ceb8
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:12:52 2013
+LENG 118 match states, 118 columns in multiple alignment
+FILT 143 out of 1887 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
+CCCHHHHHHHHCHHHHHC
+>ss_conf PSIPRED confidence values
+9853999999958999999999849997756889998999999949999999999839987764889998999999949999999999859997766889
+998999999827998849
+>Consensus
+xxxxxlxxaxxxxxxxxxxxllxxxxxxxxxxxxgxxxlxxAxxxxxxxxxxxLlxxxxxxxxxdxxgxtxlxxaxxxxxxxxxxxLxxxgxxxxxxxxx
+gxtxlxxaxxxxxxxxlx
+>2b86eaed0dd0462632e7bb6e0a56ceb8
+MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD
+GLTALEATDNQAIKALLQ
+>gi|123416765|ref|XP_001304968.1| hypothetical protein [Trichomonas vaginalis G3]gi|121886455|gb|EAX92038.1| conserved hypothetical protein [Trichomonas vaginalis G3]
+----CLTQAVRESSLEVVEFLLSLGASILEGDDNEFTPFITSFAYNRKDMAYSMLFYKSNV----------LTYCYGL----IVMLILFILLKFMKR---
+------------------
+>gi|281351399|gb|EFB26983.1| hypothetical protein PANDA_009999 [Ailuropoda melanoleuca]
+--------RQHRGVTLCQRY--REGIAEEEEGKLGMCAARGDTGAAcrrregtTRQVCS---KTRTWPGRTDAQDGGPGSQASEAHASWVRRRLASQGER
+STGFVHRVEAP--------------
+>gi|123453151|ref|XP_001314609.1| hypothetical protein [Trichomonas vaginalis G3]gi|121897165|gb|EAY02294.1| hypothetical protein TVAG_275680 [Trichomonas vaginalis G3]
+--NECFIHSTMFNIPSFSEYFFQELKTSILK-INMELRLSIMQLFSIVKKQPNFLFHMVQIsmkkmkk--------------------------------
+-------------------------
+>gi|281202058|gb|EFA76263.1| hypothetical protein PPL_10024 [Polysphondylium pallidum PN500]
+---KLLEISPKSHNLEMVQYIAKIY-KQRLPAHHKIDKDSCrvlntVAFVGRLDMFNWAIANEF----DEFRVKRLLRESAQGGNIEFFQYLMVHYPRK-
+LDSHHFQKFMVCAASADSLELMK
+>gi|123474918|ref|XP_001320639.1| hypothetical protein [Trichomonas vaginalis G3]gi|121903449|gb|EAY08416.1| hypothetical protein TVAG_354750 [Trichomonas vaginalis G3]
+---TPYLYACIYGKPETLRILEKHGADPYFrlvrasdhviyhapkckidtkeyfeqcqeeakKKQSGLNAVALSIMKDNIDVLVYLHREKKFSLDEKSNG
+FYPIHIAARQNASKCFEYLKNNmeNCDPNLRTGEHST---------------
+>gi|86143535|ref|ZP_01061920.1| periplasmic protease [Leeuwenhoekiella blandensis MED217]gi|85829982|gb|EAQ48443.1| periplasmic protease [Leeuwenhoekiella blandensis MED217]
+-----LDYTISTNNNTLYTLLLEQGIYADAGANKTYTALQEAVKEANTGWVVKLVDAGADAQVKDDGDNNLLHLAAATGNTTLINYLYGLEPQlIDSENR
+AGDLPERVAKDKGYKKVFK
+#
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+//
+�HHsearch 1.5
+NAME 2c276c7332b4ac4757cbea933e3f987e
+FAM
+FILE 2c276c7332b4ac4757cbea933e3f987e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:56:55 2013
+LENG 78 match states, 78 columns in multiple alignment
+FILT 106 out of 1048 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEECCCC
+>ss_conf PSIPRED confidence values
+957999990899899999699890999999999987979689799999999789883899599999899999947999
+>Consensus
+xxmxixvkxxxxxxxxxxvxxxxtvxxlkxxixxxxxxxxxxxxlxxxgxxLxdxxxlxxxxixxxxxixxxxxxxxx
+>2c276c7332b4ac4757cbea933e3f987e
+MGMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRRR
+>gi|154417020|ref|XP_001581531.1| hypothetical protein [Trichomonas vaginalis G3]gi|121915759|gb|EAY20545.1| hypothetical protein TVAG_239180 [Trichomonas vaginalis G3]
+-GYRVKVNCMDHFIInVSGVRDDMSSTEFLQQIAQAAVLTPNDFKIVFGIRQFFENHPLSDYKMHDGSVLKLSLRNRG-
+>gi|118353549|ref|XP_001010040.1| Ubiquitin family protein [Tetrahymena thermophila]gi|89291807|gb|EAR89795.1| Ubiquitin family protein [Tetrahymena thermophila SB210]
+--ISIQIKTLTGQTLAFKCKLNQKVYQLKNQIQEQFQISPSQQKLIYAEQQLEDDQQLYCYNLQSDCVVHLAQTLKK-
+>gi|242010787|ref|XP_002426140.1| ubiquitin domain-containing protein, putative [Pediculus humanus corporis]gi|212510187|gb|EEB13402.1| ubiquitin domain-containing protein, putative [Pediculus humanus corporis]
+--CTLKLRLSTScTDVKLLINSNKTIGMAKKKLcqqlkNSDINLEPSGQRWYFGGRLLVDKMKINEIHIQPGYVIQVIYN----
+>gi|254585453|ref|XP_002498294.1| ZYRO0G06864p [Zygosaccharomyces rouxii]gi|238941188|emb|CAR29361.1| ZYRO0G06864p [Zygosaccharomyces rouxii]
+--MNLTISnETNEEVYgPLEVSDDMTLPDLVALIELECGFDRSKHDLYHSVTLLDpNDTkSLTAIGMGDNELLLI-------
+>gi|194223268|ref|XP_001490596.2| PREDICTED: ubiquitin D-like [Equus caballus]
+------VHSEQWKLMTFNANSYDRVKKINEHVRSKTKVPVQDQILLLGSKTLKPMRKLSSYGIDKETTIHLTLK----
+>gi|297719771|ref|NP_001172247.1| Os01g0234850 [Oryza sativa Japonica Group]gi|255673035|dbj|BAH90977.1| Os01g0234850 [Oryza sativa Japonica Group]
+---RTAVRTVYGRKFKFQVDQRRNARYMKQEISrnveSPNGIG-ESMTL-VNGEKLDESTLISTICETNTSDTDFLANK---
+>gi|297823061|ref|XP_002879413.1| hypothetical protein ARALYDRAFT_321011 [Arabidopsis lyrata subsp. lyrata]gi|297325252|gb|EFH55672.1| hypothetical protein ARALYDRAFT_321011 [Arabidopsis lyrata subsp. lyrata]
+--ITLKVKNQQGAEDLYKIGAHAHLKKLMSAYCMKRNLDYGSVRFVYNGREIKARQTPAQLKMEEEDEICSVM-----
+>gi|335282306|ref|XP_003123059.2| PREDICTED: midnolin-like [Sus scrofa]
+--VPQFIGGVPHGKTGVPGGVEVPAAGVGGAAAASFACVPAGfrICLAAPSARLSSG-KLQEFGVGDGSKLTLV------
+>gi|149634203|ref|XP_001511134.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
+--KKVEILDyKTKKQLCFldKVEPHASINDIRLMFHkFYPQWYPARQSIRldPKGKSLRNEEILQRLPVGTTATLYF-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * 3156 * * 3182 * 363 * * * * * * * * * 1
+ 0 * * * * * * 4649 0 0
+
+G 2 4777 * 2843 4423 * 2062 * * * 5067 4507 * 3420 4626 * 2617 2942 4747 * * 2
+ 82 4182 * 2000 415 * * 7258 1138 0
+
+M 3 6147 6171 * * 4756 5859 * 2487 6203 3457 1417 6023 6376 5308 6349 5746 5268 3057 * 5033 3
+ 0 * * * * * * 9346 0 0
+
+I 4 * * 4666 3144 5841 * 4928 4518 3106 6353 5597 5093 3907 2387 3085 3877 3340 5461 * 6628 4
+ 0 * * * * * * 9573 0 0
+
+V 5 * * * * 4357 * * 1633 * 2022 6413 5527 * 5938 * 5087 * 1721 * * 5
+ 14 6689 * 0 * * * 9684 1000 0
+
+F 6 4850 5554 6584 5067 2689 * 4429 3393 2990 3493 6556 4262 * 6345 3939 4244 3052 4084 * 5653 6
+ 0 * * * * * * 9695 0 0
+
+V 7 6428 4224 * * 5393 6429 5574 2017 * 2495 6145 * * 6673 * 6171 6636 1397 * 5238 7
+ 0 * * * * * * 9731 0 0
+
+R 8 5568 6604 * 4790 * 4720 5538 6519 1573 4067 6600 3444 5414 5555 2090 4703 4749 6812 * * 8
+ 125 3596 * 2010 412 * * 9753 2369 0
+
+F 9 4278 4920 3455 5644 4331 4085 4298 4991 5490 3827 5583 4167 6361 4255 5723 2522 3002 4976 5579 6798 9
+ 119 4886 4466 0 * * 0 9666 1400 1106
+
+N 10 3947 6232 6598 4972 3977 4926 4605 3947 3809 3322 4107 5664 3226 3768 4903 3779 3951 4214 6281 6598 10
+ 48 5565 6398 1000 1000 479 1822 9726 1148 1861
+
+S 11 4902 5739 2936 4346 * 2595 5650 6453 3403 4991 6642 2802 5447 6184 3925 3920 3365 5973 * 6622 11
+ 52 4822 * 0 * 1301 751 9791 1533 1316
+
+S 12 5402 * 3368 3754 * 1495 4545 * 3817 6649 6092 3526 6676 4637 4697 3700 5115 6801 * 5502 12
+ 78 6421 4611 0 * * 0 9805 1009 1106
+
+Y 13 4310 * 4335 2742 6303 3973 4140 * 3001 6408 * 4649 4406 3542 2999 3484 4259 4938 * 6848 13
+ 176 3791 4548 503 1763 779 1262 9896 2134 2007
+
+G 14 5774 5477 3275 3914 5172 5571 4006 3116 3680 4128 6405 * 5607 4299 5576 3505 3004 3487 6778 6257 14
+ 44 5044 * 527 1708 854 1162 9852 1404 2096
+
+F 15 4041 6800 6146 4188 2661 5714 4668 2947 4132 3370 5623 5643 6408 5663 4885 5101 3731 3459 5490 4714 15
+ 69 4420 * 272 2540 0 * 9967 1600 1397
+
+P 16 5028 5626 5375 2811 4277 4431 * 4470 4887 4087 7158 5078 3688 4388 4035 3094 3486 3234 * 6478 16
+ 0 * * * * * * 10097 0 0
+
+V 17 5759 6758 * * 2429 * 6848 2583 4795 2055 5346 5802 6669 6688 6855 4696 6836 2591 * 4312 17
+ 66 4834 6725 816 1211 * * 10097 1527 0
+
+E 18 3842 * 2977 2775 * 4515 4816 6608 3537 5099 * 4121 3798 4482 4605 3425 3483 4839 6521 6834 18
+ 79 4582 6413 681 1411 0 * 10078 1643 1000
+
+V 19 4919 4739 * * 2893 4516 * 2370 6054 3329 6873 * 5718 6388 * 5525 4225 1659 * 6415 19
+ 64 5668 5381 0 * * 0 10065 1283 1029
+
+D 20 5182 * 2941 2932 * 3402 5441 * 4415 5017 * 3973 3502 4380 4170 2428 4164 * * 5744 20
+ 41 5161 * 1977 423 1671 544 9991 1352 1529
+
+S 21 4270 * 4220 3445 6539 4554 5829 * 3633 3204 * 4548 1959 4353 4947 3889 4700 4435 6768 * 21
+ 0 * * 1585 585 * 0 10022 1106 1303
+
+D 22 5051 6549 2756 3433 5661 3572 4264 6844 5260 5759 7072 2619 6859 4434 * 3493 3275 4523 * 4362 22
+ 0 * * * * 0 * 10022 0 1303
+
+T 23 2718 5086 2744 3437 * 5180 * 5604 4499 4262 4685 4344 6556 3846 5757 4356 3340 4153 4933 6763 23
+ 10 7135 * 1000 1000 * * 10097 1000 0
+
+S 24 6386 5853 5117 6058 6684 * 6250 5346 4319 4870 5807 4846 3362 5849 5634 2448 1262 * * 7078 24
+ 25 5847 * 2865 213 * * 10097 1178 0
+
+I 25 4716 * * * 5614 5115 * 1836 * 2705 5240 * 6286 5300 * 4727 5421 1501 * * 25
+ 0 * * * * * * 10097 0 0
+
+L 26 3612 * 6909 2941 6646 2404 6610 6809 3171 4121 * 4993 6921 3858 3513 3325 5113 6162 * 4203 26
+ 0 * * * * * * 10097 0 0
+
+Q 27 4122 * 2434 2374 * 6417 6215 6860 3934 4559 5153 4569 * 2548 * 3570 4796 4538 * 5757 27
+ 0 * * * * * * 10097 0 0
+
+L 28 5766 * * 6162 2940 * * 2518 * 1295 6534 * * * * 5300 * 2190 * * 28
+ 0 * * * * * * 10097 0 0
+
+K 29 6162 6843 * 6690 5601 5721 6031 4606 828 4365 5483 * * 4232 2843 5312 * 5668 * * 29
+ 0 * * * * * * 10097 0 0
+
+E 30 3080 * 3618 2603 * 5443 5884 7026 2652 5114 5248 4339 6040 3514 4794 3312 4128 5168 * * 30
+ 15 6591 * 4459 67 * * 10097 1037 0
+
+V 31 2945 * 6418 3952 4765 * 4622 5231 2682 3719 4183 * 6275 2973 2987 5599 4597 4804 * 4683 31
+ 10 * 7213 * * * 0 10073 0 1037
+
+V 32 6412 * * * 3705 6267 5791 1514 5881 1803 5606 6364 * * * 6667 * 2651 * 5320 32
+ 79 4894 5672 1024 977 1497 631 10071 1607 1169
+
+A 33 1818 5468 5818 3741 4454 6526 4509 6870 4667 5260 * 5867 * 3352 4177 3385 5410 4337 6392 3720 33
+ 54 4772 * 277 2515 * 0 10037 1518 1444
+
+K 34 3565 6350 3427 2615 5714 * * 5913 3244 4803 6209 4608 5420 2848 3951 2786 4886 6674 * * 34
+ 45 5015 * 2552 270 * 0 10037 1581 1444
+
+R 35 3326 * 4747 3326 * 6647 5252 3842 2358 3875 6661 6733 5607 3559 2896 4872 5191 4952 * 4595 35
+ 40 5183 * 0 * * 0 10037 1339 1444
+
+Q 36 5032 4911 6676 3284 3358 4581 5068 4254 3721 3872 6742 6452 5191 5965 4168 4222 2840 5056 6725 3245 36
+ 38 7173 5736 1000 1000 * 0 10037 1000 1444
+
+G 37 4568 * 4157 4869 6459 1326 4764 * 3793 5760 6226 3529 5392 3757 4648 3906 6161 6423 * * 37
+ 190 3016 * 2116 378 1396 689 10027 3201 1853
+
+V 38 5666 4750 6372 5773 4364 5298 * 2177 4386 2607 5467 5731 4573 5678 6667 4756 4311 3134 4931 4086 38
+ 102 4986 4766 1607 574 636 1488 10065 1452 1464
+
+P 39 4052 * 3451 3384 6662 6468 5006 5570 4992 4694 6792 4814 2235 4226 6161 2646 4873 4259 * 4699 39
+ 78 5092 5419 0 * 1001 999 10012 1326 1797
+
+A 40 2378 * 4572 4007 5596 6666 6632 3850 7064 4561 6525 6146 2231 5678 4776 4558 3705 3556 5517 5409 40
+ 48 5698 6192 0 * 1137 875 9973 1179 1719
+
+D 41 3611 * 2699 3326 * 3080 4854 6160 4122 5370 6356 3136 5835 3633 5519 3247 4426 5779 * * 41
+ 55 5835 5665 0 * * 0 9986 1219 1577
+
+Q 42 4061 * 2776 3409 4924 4603 5865 6748 3566 4714 * 3779 6638 3144 2790 4399 4672 6329 * 4751 42
+ 18 6334 * 1000 1000 * 0 9944 1051 1950
+
+L 43 * 6768 6485 6329 4208 * 5365 2531 6153 2780 3527 6686 * 1646 * * 6656 3508 6454 5016 43
+ 16 6485 * 2108 381 1500 629 9944 1242 1950
+
+R 44 * 5653 6011 3877 * 5676 5914 5777 2250 5643 6622 4971 * 5152 1603 3823 4301 3872 6629 6279 44
+ 24 5939 * 0 * 1816 482 9992 1106 1557
+
+V 45 * 6561 * * 3549 * 6191 2145 * 875 6896 * * 6023 * * * 3810 5387 * 45
+ 29 6736 6561 0 * 1013 987 10010 1010 1345
+
+I 46 4556 4746 * 4754 3665 * 5845 3154 6678 2486 4516 5152 * 4592 4750 3982 3895 2678 5558 5167 46
+ 97 4161 6744 1000 1000 * 0 10046 1865 1313
+
+F 47 4183 4742 6437 6824 2514 * 3348 4216 5538 3044 * 6797 4838 7063 6633 4073 4941 4236 * 2246 47
+ 63 5121 6144 2047 400 0 * 10040 1545 1520
+
+A 48 3496 6145 3301 4892 6174 2409 5814 6752 2842 5675 5884 2818 5137 3639 4596 5614 5567 * * 5398 48
+ 39 5215 * 1730 517 * 0 10047 1426 1067
+
+G 49 5803 * 4262 4925 * 876 7093 6459 5076 6191 6898 4128 * 4754 5693 3287 5567 * * 4492 49
+ 187 3219 6174 1530 613 0 * 10047 2758 1067
+
+K 50 4376 * 5773 4015 4849 4806 4497 6678 2017 4901 * 5072 5474 3704 2420 3415 5121 5135 * * 50
+ 41 5876 6502 0 * 0 * 10037 1128 1054
+
+E 51 5223 7117 4417 3739 3907 * * 3486 4334 2934 * 6416 3330 3350 3873 4435 4693 3021 6363 6627 51
+ 48 4940 * 1144 869 * 0 10063 1443 1008
+
+L 52 * * 6794 6172 4411 * 5796 4115 6408 670 4391 * 5069 6449 6363 6729 * 3272 * * 52
+ 159 3261 * 1185 836 * 0 10063 3027 1008
+
+P 53 3807 6201 3228 2831 6459 6468 4497 * 2534 4711 6584 3746 4029 5632 3828 3361 6556 4821 6679 * 53
+ 91 4265 6752 1779 497 * 0 10063 1760 1008
+
+N 54 4357 * 1132 3490 * 5022 5828 6628 5761 5099 6718 3065 3500 * * 3822 6403 * * * 54
+ 45 5022 * 2179 360 1024 977 10044 1628 1227
+
+H 55 4350 6835 2358 2733 * 3711 4788 * 4977 * * 2748 6285 4676 3879 3788 3676 5432 * 6672 55
+ 17 * 6393 * * * 0 10078 0 1015
+
+L 56 4097 6387 4330 4659 6824 6679 4437 4522 2347 3846 4849 3845 * 3274 3935 3564 4106 5794 6523 5542 56
+ 99 3914 * 674 1422 895 1113 10036 2012 1269
+
+T 57 4896 * 4371 6199 * * * 4087 3655 3085 6726 6545 4095 5346 5086 2567 1769 4579 * 6418 57
+ 47 4974 * 1388 694 * 0 10078 1460 1015
+
+V 58 7029 6845 * * 4065 * * 2425 * 933 5493 6545 5311 * 5515 5409 * 3360 6251 * 58
+ 0 * * * * * 0 10078 0 1015
+
+Q 59 2837 * 4680 3251 5358 3487 6418 * 3400 5371 * 4594 5372 3603 4329 2599 3750 5262 * 6824 59
+ 18 * 6366 * * * 0 10078 0 1015
+
+N 60 4507 * 1731 2648 5667 5547 5681 * 5525 5488 * 3812 * 3514 5808 2762 5739 6607 * 4724 60
+ 16 6530 * 3807 107 * 0 10052 1000 1292
+
+C 61 4463 3962 * * 4125 6138 6669 3762 5897 2273 6537 4719 6580 5238 6149 4594 5835 4304 * 1725 61
+ 50 5328 6791 1968 426 837 1184 10052 1549 1292
+
+D 62 4604 4776 4153 4062 * 1606 4913 6129 3669 4789 * 2753 4729 4351 5666 4818 5311 * * * 62
+ 65 6611 4879 1000 1000 1563 596 10064 1021 1357
+
+L 63 5475 5056 * 6654 5737 6540 * 1537 * 2473 4162 6792 6206 5390 5584 5707 5005 2479 5033 * 63
+ 19 6241 * 3323 152 2056 397 9987 1339 1896
+
+E 64 4430 * 3921 3296 4020 3680 4652 5167 3027 5886 * 3878 4294 3820 4045 4047 3455 4760 * * 64
+ 54 5005 7418 0 * 2485 284 10032 1365 1642
+
+Q 65 4835 * 2295 2806 * * 4645 5581 4123 4139 5700 2547 4112 5165 5276 3221 5467 * * 6455 65
+ 16 * 6533 * * 0 * 9917 0 1649
+
+Q 66 5071 5568 3003 4618 * 1608 6686 6717 4240 4915 * 2768 5593 4701 3820 5079 4827 6839 * * 66
+ 89 5546 4706 2340 317 * 0 10001 1233 1000
+
+S 67 3422 4298 2121 5633 6066 4328 5229 5315 6000 * 4854 5612 5592 5479 * 2039 4515 3937 * 5439 67
+ 21 6138 * 1585 585 1219 810 9861 1069 1827
+
+I 68 6942 * 5497 3914 5140 6482 5612 2937 3893 3815 4704 5083 6154 4271 3494 4900 2584 2817 * 6663 68
+ 0 * * * * 2141 371 9830 0 1657
+
+V 69 6447 * * * 4918 * * 1514 * 1616 5668 6601 6243 * * * * 2142 * 6738 69
+ 28 5723 * 561 1635 745 1310 9857 1349 1468
+
+H 70 4689 4613 3722 5639 4999 * 2578 3711 5437 4327 5508 4653 * 3764 4720 5568 4092 3306 * 3031 70
+ 0 * * * * * 0 9864 0 1070
+
+I 71 4934 4247 * * 4270 * 6129 3236 * 1828 3912 * * 6274 * 5371 6132 1755 5109 5825 71
+ 17 6439 * 0 * * 0 9864 1093 1070
+
+V 72 4951 6545 6067 4687 5619 * 4508 2124 5228 3126 4257 5269 * 5126 * 4676 4272 2256 4648 5556 72
+ 0 * * * * * 0 9666 0 1070
+
+Q 73 5944 4181 * 5153 5093 5901 * 2767 4768 2518 5583 * 5114 6161 3649 3500 4845 2440 5135 5877 73
+ 25 5883 * 2000 415 * 0 9148 1021 1070
+
+R 74 * 5608 4111 3801 * * 5037 * 2057 * * 4089 4710 5860 1506 3806 5600 5588 * * 74
+ 0 * * * * 0 * 8798 0 1070
+
+P 75 5111 * * 4250 * 5337 4242 5035 3159 2235 * 3638 2591 4001 5516 3335 * 5052 * 5249 75
+ 0 * * * * * * 8115 0 0
+
+R 76 3895 * * 3670 * * 4807 * 3280 * * * 3055 4639 1140 3807 5060 * * * 76
+ 0 * * * * * * 7139 0 0
+
+R 77 4260 * * 4622 * 1366 * 4376 3221 * * 3334 * * 2181 4502 * * * * 77
+ 0 * * * * * * 6461 0 0
+
+R 78 * * * * * 2682 * * 1781 * * * * 2976 2778 1836 * * * * 78
+ 0 * * 0 * * * 4071 0 0
+
+//
+�HHsearch 1.5
+NAME 2cf47989aa11bbeeda0f0b4af2c1f1ad
+FAM
+FILE 2cf47989aa11bbeeda0f0b4af2c1f1ad
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:11:37 2013
+LENG 136 match states, 136 columns in multiple alignment
+FILT 142 out of 1017 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 11.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCE
+EEECCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9975799996999999999999997797899978999999998618998899956888875899999999718997099996798879999999689869
+992899999999999999975133696334141209
+>Consensus
+xxxxxvliixxxxxxxxxlxxxlxxxxxxxxxxxxxxxxxxxxxxxxxdlvlxdxxxxxxxxxxxxxxlxxxxxxxxxixlxxxxxxxxxxxxxxxgxxx
+xlxkpxxxxxlxxxlxxxxxxxxxxxxxxxxxxxxx
+>2cf47989aa11bbeeda0f0b4af2c1f1ad
+HMNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADD
+YMTKPFSPREVNARVKAILRRSEIRAPSSEMKNDEM
+>gi|258405286|ref|YP_003198028.1| response regulator receiver protein [Desulfohalobium retbaense DSM 5692]gi|257797513|gb|ACV68450.1| response regulator receiver protein [Desulfohalobium retbaense DSM 5692]
+--DYKVRIEIGNRLVRRQFETVV--------GQk------------selsilegqslERPDLLIKEISDDPDHIFDLVQNS-------lyndeagEIFLT
+SESKDQNLVLKAMRSGAREFFGPYTVEDEISSALDRFMTRQa--------------
+>gi|119897298|ref|YP_932511.1| signaling protein [Azoarcus sp. BH72]gi|119669711|emb|CAL93624.1| hypothetical signaling protein [Azoarcus sp. BH72]
+--PKEPFRPDLSEgAETGVY---LALLELLD-EGLIITGDETVLDANSAACALLqrDYRELAGQPLANLFPSER-AFIeARARLFIQGQMRGTLTVALPA
+GGTAALRfiaaprlRPGIHALILSPLPSATaAAQP-------------
+>gi|261251799|ref|ZP_05944373.1| response regulator VbsA [Vibrio orientalis CIP 102891 = ATCC 33934]gi|260938672|gb|EEX94660.1| response regulator VbsA [Vibrio orientalis CIP 102891 = ATCC 33934]gi|342816460|gb|EGU51357.1| LuxR family transcripitonal regulator [Vibrio orientalis CIP 102891 = ATCC 33934]
+---IHFIVIEPQPLLRHSLTELVASQPfvgnvYALSDCSDVE----ailqTKPVHGIIFDPTNDLSAASELMTFLAE---Srp--HI----------yti
+aysmnmtSSYRR-lFDTmnimgivsrldsi-------------ETLQASLMAAAHGYA-------------
+>gi|293606334|ref|ZP_06688694.1| response regulator [Achromobacter piechaudii ATCC 43553]gi|292815194|gb|EFF74315.1| response regulator [Achromobacter piechaudii ATCC 43553]
+-CGIELITFGPASVSSDAVDALLKNGALREVrAACGLDALIEALCQQDADVILCEVHGVPCEALLLPGHLqrefdaGRLRRLPAVLWISDLPRSIleaca
+GSFRTAGGKLQIATIATGVAASLDLFAKAGRG--GAPAAAA-------
+>gi|119487283|ref|ZP_01621034.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]gi|119455838|gb|EAW36973.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
+--ETQFLLqaiwaIEKSQT-LEEAISSI-LDVICQNICWDYGEGWLPNPdKGVLEYIpqfqSCSAAFERFQKQSrlitfasgegLPGRIWQsHKpewied
+cstcsepvylrtqlvvDAglkavfgVPVVESEKLLAILVFYHTQAIPYQSRIVELI--QAVATQLSSSLQQAQLK-----------
+>gi|288573489|ref|ZP_06391846.1| response regulator receiver modulated diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]gi|288569230|gb|EFC90787.1| response regulator receiver modulated diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
+--NSQLQKLSGDYRSALDDVKRV-QANFQTIMETTGDGIVVVDDAGLVRYVnpaaelLFESSSSEMIGNPF--SYDVdeDGDW--EISIKTSKGE-IYV-
+--DMRVVGS-NWDGDLVRLATLR-DISETVCLR-----------
+>gi|307721789|ref|YP_003892929.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]gi|306979882|gb|ADN09917.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294]
+--NSISVIASTQH--VSFASKSF-LKYFGVADADEFNEKY----AS-----IINIFENNEDSintkniksyLHegksLYDFINFldETQRiTII----QN
+SENEQKSFLINIS-QI------NETQFLMNFTDVTEIEKQR-----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+H 1 1638 * * * * 1555 1563 * * * * * * * * * * * * * 1
+ 0 * * * * * * 2441 0 0
+
+M 2 3906 4349 4743 * 4700 * * 3665 3732 * 1196 4701 * * 4764 3770 3855 * * * 2
+ 52 * 4810 * * * * 8246 0 0
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+P 127 2353 * 4767 4181 * 5192 * * 3949 4036 * 3992 2927 4020 4072 4148 2415 * * * 127
+ 0 * * * * * 0 8743 0 1215
+
+S 128 4604 * * 3790 * 3407 4691 * 4852 2910 * 3707 3237 5000 4810 1727 * * * 4870 128
+ 70 4404 * 0 * * 0 8466 1082 1215
+
+S 129 2823 * 4450 4467 4519 3482 * 4621 * 4371 4334 * * 2927 3445 2492 3396 * * * 129
+ 0 * * * * 0 * 7729 0 1215
+
+E 130 4012 * 4123 1904 * 4132 * * 4047 3230 * 4123 4150 * 4187 2560 4291 * * * 130
+ 110 3770 * 2585 263 * * 7107 1113 0
+
+M 131 3860 * * 2811 3856 * * 3833 * 1620 3025 * 3966 * 3781 * * 3958 * * 131
+ 0 * * * * * * 6410 0 0
+
+K 132 2045 * 3804 3779 * 3730 * * 2752 * * * 3603 2713 3658 3732 * * * * 132
+ 158 3268 * 3585 126 * * 6106 1095 0
+
+N 133 * * 1285 * * * * * 3263 3413 * 1352 * * * * * * * * 133
+ 0 * * * * * * 5337 0 0
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+D 134 * * 1459 * * 2955 * 2983 * 2916 * * * 2959 3063 * * * * * 134
+ 0 * * * * * * 4807 0 0
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+E 135 2983 * * 987 * * * * * * * * * * 3063 * 2959 3050 * * 135
+ 0 * * * * * * 4807 0 0
+
+M 136 * * * * * * * 3050 2956 3063 1437 * * * 2955 * * 2916 * * 136
+ 0 * * 0 * * * 4807 0 0
+
+//
+�HHsearch 1.5
+NAME 2dc7af2028fa424ea0f21cfb017ac190
+FAM
+FILE 2dc7af2028fa424ea0f21cfb017ac190
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:25:20 2013
+LENG 145 match states, 145 columns in multiple alignment
+FILT 142 out of 652 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEEECCEECCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCC
+CCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
+>ss_conf PSIPRED confidence values
+9468899997630378888999999999997889863875178889990043799999575487988836799995888999999899958987312888
+879999889434242689666859999999999980489976788
+>Consensus
+xxxxxxxxxxxxxxYxxxxxxxxdxxxxlxxyxxLxpxxxxxxxxdGxxxxLlxlxGtIpxxyxgxxyxiPvxixlpxxYPxxpPxvxvxptxxmxixxh
+pxVdxxGxvxlpxLxxWxxxxxxLxxllxxlxxxfxxxpPxxxxx
+>2dc7af2028fa424ea0f21cfb017ac190
+MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTG
+KHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP
+>gi|224066317|ref|XP_002302080.1| predicted protein [Populus trichocarpa]gi|222843806|gb|EEE81353.1| predicted protein [Populus trichocarpa]
+--------------------FIRKhLLSLIQDYPTFTLSTNTFFHDDGTTVNLLYATGHLHVANHT--PSIPLTIWIHENYPCMPPMVYVLSDSTSPIHQ
+DhPFVHSSGATSSPYLQTWVFPRCHLTELVHNLVRIFSHDHPFVY--
+>gi|50289071|ref|XP_446965.1| hypothetical protein [Candida glabrata CBS 138]gi|49526274|emb|CAG59898.1| unnamed protein product [Candida glabrata]
+------LFKVIQPIYKQPKLVFHDAVQTLTEFKNLRPRTRVFTDEDGSPRLLLCLYGGIPIEQ---GLDVPVLIWIPESYPIAKPLLFIDlelLDKDLQL
+ATNESVEPDGRVHTRLLRQWNPQSANLFNVIQDLADMCNAIAPIQpvtfsstvapgT--
+>gi|156087172|ref|XP_001610993.1| hypothetical protein [Babesia bovis T2Bo]gi|154798246|gb|EDO07425.1| hypothetical protein BBOV_IV010720 [Babesia bovis]
+------------RHFYDELIVCNDVTDVLKKYKSLSVALDRI---GG--EVVLNLKGTLPYTHANVEYHCPIGITIGTLYPKTPPLFKVISSGTIRIATN
+hPCVAKNGNIVMAYFDKWSA-RCTVMDAINLVLGEFNKQSPIYQ--
+>gi|154416614|ref|XP_001581329.1| hypothetical protein [Trichomonas vaginalis G3]gi|121915555|gb|EAY20343.1| hypothetical protein TVAG_193190 [Trichomonas vaginalis G3]
+--------------------ICRDIELFIQRYNTLQPR--QFSSSVGN---LIAISGYLLFNIGGTQSYVNLDITLTPKFPMKSPYIQFRIDPS-QICPS
+HGLTPQGVVNMPVVHNWVFRQSTLLQMGDDLYRFFMQNPPIM---
+>gi|145487706|ref|XP_001429858.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124396952|emb|CAK62460.1| unnamed protein product [Paramecium tetraurelia]
+-----ELYRVISqCAYRNHSQVATDAANILYNYPKLFNPLITQTSENGVIKQLLELKGELPIKYKGSTYSIITSIQFPFIYSDAPAVIRIyNPDISKfSV
+NqyfiQGASQDQSvVNIHNTELQSWYQHRSiarVMVALVRELEGHF----------
+>gi|300175628|emb|CBK20939.2| unnamed protein product [Blastocystis hominis]
+------------------------------------SKCEVYDINiNGVNTR--CLKCSVnhYCTYYNQKYLIPIDLFVPNSFPYVDPILYIRPPAGSKI
+VPIpNVVDADGRIIYILVSNIK--NITLNQFFASLDSCFATCFPI----
+>gi|340713047|ref|XP_003395063.1| PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like isoform 2 [Bombus terrestris]
+------------------------------------PPTGVSGAPTDN--NIMIWNAVIFgphdTPFEDGTFK--LTIEFTEEYPNKPPTVRfISKMF--
+----HPNVYADGGICLDILQNrWSP-TYDVSAILTSIQSLLDE--------
+>gi|32967283|ref|NP_861515.1| ubiquitin-conjugating enzyme E2 C isoform 2 [Homo sapiens]gi|114682254|ref|XP_001156756.1| PREDICTED: ubiquitin-conjugating enzyme E2 C-like isoform 2 [Pan troglodytes]gi|119596211|gb|EAW75805.1| ubiquitin-conjugating enzyme E2C, isoform CRA_b [Homo sapiens]
+--------------------------------------KGISAFPESD--NLFKWVGTIHGaagtAVGSIRTS--STVCLLSGPRETQDSSkPLV-----
+---------------------WGL-GWDMRLLLeLTLQLFLQ---------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 197 * 2968 * * * * 2642 0 0
+
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+ 0 * * * * * 0 3135 0 1005
+
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+
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+
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+
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+
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+
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+
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+
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+I 97 6155 * * * * * 6428 1286 * 2875 * * 5776 5615 * * 2835 2006 * * 97
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+
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+
+G 100 6948 * 5115 * * 2485 1258 6257 6902 * * 3093 * 6646 6262 2507 5846 6455 * * 100
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+
+K 101 4499 5957 7407 4603 6494 5713 4783 6911 3461 6471 6166 4033 1173 3959 3799 4246 * 6899 * * 101
+ 47 4954 * 0 * * 0 6940 1231 1190
+
+H 102 6336 4244 6322 7232 3801 5501 2637 6243 7323 5416 6623 1328 * 7060 6097 4305 7498 6265 * 3075 102
+ 0 * * * * * 0 6940 0 1190
+
+V 103 5265 * * * 6911 * * 2197 * 4668 6455 * * 5584 * * 7584 595 * 6813 103
+ 86 4403 6577 178 3108 * 0 6940 1231 1190
+
+D 104 4490 6818 820 4380 7117 5838 6804 * 5250 6345 6516 3074 5371 * * 3882 5716 * * 5713 104
+ 50 4875 * 1010 990 860 1155 6919 1256 1255
+
+A 105 2833 * 4504 3270 6965 4297 4456 5506 4659 4599 6035 4924 2658 4414 6081 2765 4292 4713 * * 105
+ 58 4671 * 635 1489 * 0 6943 1207 1084
+
+N 106 6169 * 2908 4347 6956 * * 6494 4484 6365 * 2261 * 3858 5032 1708 3386 * * 5803 106
+ 44 5067 * 0 * 1458 653 6919 1120 1164
+
+G 107 * 6627 7079 * * 159 7353 6160 * * * * * * 5428 * 5471 5586 * * 107
+ 29 7776 6018 0 * * 0 6943 1000 1084
+
+K 108 3891 5191 7013 3475 5358 4187 * * 3173 3513 4469 3306 * 4115 2183 5327 4842 4797 6666 * 108
+ 0 * * * * * 0 6925 0 1185
+
+I 109 * 3991 * * 3692 * * 1477 * 5827 5708 7732 6715 * 6411 * 5256 1281 * * 109
+ 29 5658 * 1585 585 * 0 6925 1077 1185
+
+Y 110 4997 1517 6957 6881 5229 5690 3436 5252 * 6875 7349 4313 * 5112 5732 3726 4287 5892 * 2461 110
+ 30 * 5595 * * * 0 6925 0 1185
+
+L 111 5766 * 6805 6320 5140 5558 3141 3473 6778 1270 4160 5148 5292 * * 4495 4847 3854 6447 6153 111
+ 0 * * 2000 415 1191 832 6882 1044 1338
+
+P 112 4764 * 2941 4130 * 5424 6879 4896 5893 * 6335 3962 1065 5777 5876 3683 5271 * * * 112
+ 46 * 4989 * * * 0 6911 0 1166
+
+Y 113 4678 6865 * 4585 4750 5352 * 2425 * 3255 4390 * 5540 * 6761 6584 5140 4326 6898 1386 113
+ 7 * 7697 0 * 2091 386 6871 1044 1370
+
+L 114 6002 * * 6146 4644 7203 * 3229 * 452 6116 * 7721 5905 * * * 4544 * 7129 114
+ 177 3112 * 576 1603 2453 291 6892 1693 1304
+
+H 115 4186 * 3111 3327 * 4217 3023 * 3823 6124 5217 4321 * 2979 3637 2949 4465 6802 * * 115
+ 79 4589 6389 1218 811 2019 409 6890 1294 1239
+
+E 116 4849 * 2581 2582 * 4319 5978 * 4345 * 7535 3027 6907 3320 3628 3086 4352 7570 * 5236 116
+ 387 2088 * 941 1062 348 2220 6890 2455 1432
+
+W 117 * * * * 6362 * * 6259 * * * * * * 6628 * * * 100 4996 117
+ 48 4938 * 1000 1000 * 0 7001 1201 1049
+
+K 118 3996 * 3966 5546 5777 5369 4545 5653 2579 4677 6662 3226 7632 4791 4749 2630 3566 3970 * 4818 118
+ 28 * 5707 * * 0 * 6996 0 1049
+
+H 119 3667 6955 6607 5750 3733 5030 4039 5857 6884 5415 * 7601 1383 4080 4738 3961 5005 6419 5319 4285 119
+ 1028 4080 1151 2255 339 1207 819 6975 1455 1098
+
+P 120 4293 * 3991 3203 * 3853 4346 * 4853 * * 5947 1840 2979 4006 4572 4136 4974 * 6772 120
+ 86 4353 6772 3115 177 0 * 5890 1170 3647
+
+Q 121 2798 5173 5953 7203 * 3764 7574 6199 4203 * 5542 3961 6825 3803 3057 2119 3218 5260 6859 * 121
+ 57 5013 7025 3192 167 * 0 7004 1179 1049
+
+S 122 5262 3283 * * * 5773 4362 4275 4925 3670 4424 4925 6508 6435 * 1655 4051 5162 5185 3239 122
+ 28 5677 * 1585 585 1414 679 6987 1062 1113
+
+D 123 * * 2832 5781 * 6331 5090 * 4047 * * 1976 6257 5478 4669 2697 2108 5386 * * 123
+ 7 * 7770 * * * 0 6985 0 1049
+
+L 124 6548 6655 * * * * * 2667 * 778 4524 * * * * 6526 5366 2642 * * 124
+ 16 6500 * 0 * * 0 6983 1009 1083
+
+L 125 4204 6620 5007 4466 4319 6195 5927 5219 4200 2786 5932 5261 6854 4436 3780 3182 4017 2474 * 5029 125
+ 18 * 6349 * * * 0 6983 0 1083
+
+G 126 4082 * 3106 2784 * 3146 5445 6850 4654 4602 5873 4109 7582 2878 4510 2960 4345 7160 * 6761 126
+ 0 * * * * * 0 6951 0 1165
+
+L 127 4545 5180 * * 4300 6652 * 3224 * 1070 5329 * * * * * 7109 2197 * 4822 127
+ 0 * * 1365 709 938 1065 6951 1059 1165
+
+I 128 4811 5441 6527 * 4259 6327 * 1922 * 1644 5148 * * * * * 5309 2130 * * 128
+ 38 5262 * 0 * * 0 6984 1133 1049
+
+Q 129 3788 6491 4352 2922 7247 4750 4746 4347 3856 3508 6034 4711 * 2269 3324 4774 5450 5144 * * 129
+ 15 * 6642 * * * 0 6978 0 1049
+
+V 130 3664 * 3800 3210 5330 3734 5110 3987 5932 5362 * 4440 6488 4735 5456 2746 4046 2578 7330 7017 130
+ 0 * * 0 * 932 1071 6990 1060 1166
+
+M 131 5837 5330 * * 4511 * 6652 2581 * 1037 2815 6525 * * * 6491 * 3549 * * 131
+ 0 * * * * * 0 6978 0 1049
+
+I 132 3660 4357 5278 5135 * 5146 5784 3241 5015 3455 4933 * 7051 2725 3531 3296 5489 3839 * 3802 132
+ 0 * * * * * 0 6978 0 1049
+
+V 133 3171 6317 3132 3661 5047 4233 4793 5720 4692 4327 5818 5290 7125 3333 3729 2719 5935 4767 * 5245 133
+ 0 * * * * * 0 6974 0 1049
+
+V 134 3337 5319 6385 4892 4241 * 4969 3230 4899 1797 4129 * * 5149 * 5180 4400 2790 * 6292 134
+ 15 * 6601 4087 87 0 * 6974 1049 1049
+
+F 135 * 5834 * * 979 * * 4222 * 1513 6151 * * * 6469 6932 * 5581 6773 7017 135
+ 0 * * * * * 0 6971 0 1010
+
+G 136 3205 6555 5148 5078 * 2346 5565 4922 5265 5383 5122 4027 7374 3817 4789 1868 4919 * * 6374 136
+ 14 6666 * 3964 96 0 * 6734 1074 1010
+
+D 137 2876 5513 3544 2306 6536 * 4122 5277 4006 5101 6043 3745 * 4388 3763 3722 4161 6367 * 6203 137
+ 0 * * * * * 0 6587 0 1006
+
+E 138 6223 4573 2822 1497 5596 * 6360 4297 5597 * 5546 3475 5675 3858 4926 5014 5149 6724 * 4534 138
+ 0 * * * * * 0 5915 0 1006
+
+P 139 5909 4382 * * 4246 * 4059 5287 * 5490 5112 * 641 * * 4329 5193 * * 5181 139
+ 0 * * * * * 0 5834 0 1006
+
+P 140 * * * * * 6331 * * * * * 5653 47 * * * * * * * 140
+ 0 * * * * * 0 5834 0 1006
+
+V 141 * 6190 * * 3734 * * 2856 5645 1484 6254 * * 5765 * 6326 * 1508 * * 141
+ 0 * * * * * 0 5831 0 1006
+
+F 142 * * * * 2007 6250 * 5135 * 3900 4568 * * 5445 4147 4575 4298 4789 * 1351 142
+ 39 5245 * 3459 138 * 0 5411 1004 1006
+
+S 143 1845 * 5307 * * * 5212 * 5394 5119 5409 6005 5991 4221 * 1444 3086 * * 5438 143
+ 24 5893 * 0 * * 0 5046 1018 1006
+
+R 144 * * * * * * * * 1065 4641 * * * 4570 1523 5899 4194 5617 * * 144
+ 0 * * * * 0 * 4543 0 1006
+
+P 145 4442 * * * 4096 * * 5023 4785 * * * 758 4025 * 2907 * * * 4559 145
+ 0 * * 0 * * * 4230 0 0
+
+//
+�HHsearch 1.5
+NAME 2ebbe0783d204f9b6a288ba6e9641f90
+FAM
+FILE 2ebbe0783d204f9b6a288ba6e9641f90
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:23:44 2013
+LENG 128 match states, 128 columns in multiple alignment
+FILT 133 out of 1234 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
+EEECCHHHEEECCEEHHHHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9999993899999999999999999999849892796999999676036707999897699999987899999999999999999999969390639999
+9987989946988998998762797779
+>Consensus
+xixixxxxgxxxexxxxlxxxixxxxxxxxxxPxxxxxvxxxxxxxxxxxxgxxxxxxxxxIxvxxxxgrxxexkxxlxxxixxxlxxxlgixxxxvxix
+ixexxxxxwxxxGxxxxxxxxxxxxxxx
+>2ebbe0783d204f9b6a288ba6e9641f90
+MITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEIT
+IKEQPAHCWGFRGMTGDEARDLDYDIYV
+>gi|334881627|emb|CCB82523.1| 4-oxalocrotonate tautomerase [Lactobacillus pentosus MP-10]gi|339638689|emb|CCC17842.1| 4-oxalocrotonate tautomerase [Lactobacillus pentosus IG1]
+-MRIDMIRGRSQSEIKQILDIAYHAASTALHLRPRDRYQIVTQHDPDEMIIEDvglgfERTSAFLMFSL-T-sSPRKVEDKQQFYQLLVHDLHQQLGIAP
+ADVMINITTNSYEDWSFGDG--------------
+>gi|197123365|ref|YP_002135316.1| tautomerase [Anaeromyxobacter sp. K]gi|196173214|gb|ACG74187.1| tautomerase [Anaeromyxobacter sp. K]
+--LFDLSVSPPDDDRARFGAAVARRFGEIMDTGTDHVAVLVRAHSQGSLTLGLAsdPARGVALASADIRVGRTQDQERRLCLAFIEELERWFGIPKDQVY
+VVLTRHDGPEF-------------------
+>gi|182676840|ref|YP_001830987.1| hypothetical protein Bind_3691 [Beijerinckia indica subsp. indica ATCC 9039]gi|182636470|gb|ACB97243.1| hypothetical protein Bind_3691 [Beijerinckia indica subsp. indica ATCC 9039]
+--RLTLTSIPTLDQANHLATELTELIAHDLGKRQELTSILVETSGISHWAIGAegRLTAAHLEVCVTA-GTNSEQEKRAFIANAMTILRTVLPGLNPATY
+VVIRELPATDWGYDGRTQADRA--------
+>gi|127512436|ref|YP_001093633.1| 5-carboxymethyl-2-hydroxymuconate isomerase [Shewanella loihica PV-4]gi|126637731|gb|ABO23374.1| 5-carboxymethyl-2-hydroxymuconate isomerase [Shewanella loihica PV-4]
+-------------AIDNLVEQVHRGAIESELFEPASIKSRAYSA--EHYCVGEAKAASFIHISFKIMPGRSSEQKLHLMQCVDRLIAPL-CASVSSITME
+VLDIEREHYFK-----------------
+>gi|239820694|ref|YP_002947879.1| 4-oxalocrotonate tautomerase family enzyme [Variovorax paradoxus S110]gi|239805547|gb|ACS22613.1| 4-oxalocrotonate tautomerase family enzyme [Variovorax paradoxus S110]
+-VIVEMWEGRTVDQKRNLVKAITQAMVDHAGCKPDHLHVVIHDTPKESWGRNG-----------------------------------------------
+----------------------------
+>gi|336380645|gb|EGO21798.1| hypothetical protein SERLADRAFT_474679 [Serpula lacrymans var. lacrymans S7.9]
+--------------TKAFVSEFSKFCATTIDKPEK--AFSVNFIYNPHLTFA-GTFDPAIMLNVMSLYNTNPTSVQKWSKAFADYFEEKLGVTSDRGYMA
+FQDPGPAFIGTRGSTVEVL---------
+>gi|262202814|ref|YP_003274022.1| 4-oxalocrotonate tautomerase [Gordonia bronchialis DSM 43247]gi|262086161|gb|ACY22129.1| 4-oxalocrotonate tautomerase [Gordonia bronchialis DSM 43247]
+QIQLTVPAGaLTDQGRTTIQQDLARALLKWEGAPDNDFFKAlgwsyLHELPEGAQVTA-ADTEPRFRVDVTVPQFaLNDERKAGLSKEVTGLVLAAAGLG
+PEhalRVWVLINEQTDGTWSVGGQ--------------
+>gi|28378091|ref|NP_784983.1| hypothetical protein lp_1348 [Lactobacillus plantarum WCFS1]gi|342241468|emb|CCC78702.1| hypothetical protein lp_1348 [Lactobacillus plantarum WCFS1]
+-------------------------------VPGKSEEVLMVGIEDQYDLYLHGDdRVNLAYISVAIYGIPHHEGYVNLNLAITKLFYEVLKIHPENIFI
+DYADI--RAWGNSGYFIDGK---------
+>gi|54024265|ref|YP_118507.1| hypothetical protein nfa22960 [Nocardia farcinica IFM 10152]gi|54015773|dbj|BAD57143.1| hypothetical protein [Nocardia farcinica IFM 10152]
+--HIYHPPAtYTEADKQQFAQAVTRSYRSWG-LPDFYVVVLFHEIAAVDCYVGGRPADSTVRVVVEHLARqlEDPDMRRIMTEKLDTVMAPFTHDRGLHC
+EFHVDETPRDLWMIGGL--------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * 4011 * * 4154 * 1284 2762 3639 * 2918 * * 4217 4126 * * 1
+ 0 * * * * * * 5049 0 0
+
+I 2 5741 * * * 4490 * * 1377 * 2984 5252 * * * * * 4001 1571 * * 2
+ 0 * * * * * * 7163 0 0
+
+T 3 * * 5216 5656 * * 3095 5457 2833 3825 * 3092 * 3618 2004 * 2693 * * * 3
+ 0 * * * * * * 7827 0 0
+
+V 4 4981 4919 * * 3521 * * 1175 * 3506 * * * * * * 5501 1760 * * 4
+ 0 * * * * * * 7928 0 0
+
+F 5 5501 * 2312 3261 5437 * 3066 * 3746 * * 4920 * 4571 * 3052 2916 5438 5933 3512 5
+ 22 * 6063 * * * * 7928 0 0
+
+G 6 4616 * * 5491 * 4468 5725 2683 * 1977 3055 * * * * 4907 5977 2301 4703 4254 6
+ 67 4471 * 0 * 0 * 7923 1339 1000
+
+L 7 3560 5527 * * 4299 5433 6026 3484 4241 3024 * * 2556 4151 3312 3642 5136 3826 4925 * 7
+ 0 * * * * * * 7928 0 0
+
+K 8 2776 * 5661 2729 * 5018 5498 * 2135 * * 6063 3947 3368 3434 5136 3611 5430 * * 8
+ 29 5631 * 0 * * * 7928 1030 0
+
+S 9 4458 * 4691 4358 * 815 * 4480 4484 * * 5295 5501 4831 4679 3883 5664 * * * 9
+ 318 2436 6263 0 * * * 7928 2121 0
+
+K 10 5488 * * * 4083 5657 4697 3847 3568 2470 5513 5739 4271 5523 1926 * 3883 5738 5422 4685 10
+ 79 5270 5204 0 * 0 * 7938 1018 1057
+
+L 11 * * 3517 4862 * * * * 5995 5480 * 3620 3029 * 5532 1905 1674 5995 5743 * 11
+ 0 * * 0 * 0 * 8158 1027 1027
+
+A 12 2785 * 2539 3653 * 4430 5075 * 4671 3324 * * 2958 3466 3536 5305 4841 5466 * * 12
+ 27 5729 * 0 * * * 8654 1000 0
+
+P 13 2992 * 2854 1411 5135 * * * * 4327 * 5904 4687 3709 4802 4538 5896 4216 * * 13
+ 0 * * * * * * 8654 0 0
+
+R 14 3211 * 3109 3096 * 5941 5874 6081 4970 5347 4994 3993 5881 2129 5938 5132 3625 5313 * 3968 14
+ 0 * * * * * * 9002 0 0
+
+R 15 4149 6135 * 4301 6321 5370 * 3624 2138 3730 5340 5864 3594 6419 2215 6557 4148 4666 * * 15
+ 0 * * * * * * 9527 0 0
+
+E 16 2893 * 4039 2825 * 5562 * * 2648 6528 * 3544 6637 3170 2911 4818 4267 4483 * * 16
+ 0 * * * * * * 9628 0 0
+
+K 17 2235 * 3952 3188 6642 3617 5770 * 3027 5234 * 4136 * 3748 3054 4133 4859 6512 * * 17
+ 0 * * * * * * 9628 0 0
+
+L 18 5544 5753 * * 2543 * * 1958 * 1301 5113 * * * * * 6422 3821 6162 * 18
+ 0 * * * * * * 9628 0 0
+
+A 19 2356 5435 * * 6281 4227 5084 3952 5251 2196 3599 5184 * 4473 * 3498 6474 3037 * * 19
+ 0 * * * * * * 9652 0 0
+
+E 20 3184 * 2689 2522 * 6499 5897 * 3108 4308 6462 5956 6735 3925 3422 3726 3932 5092 * * 20
+ 26 * 5799 * * * * 9652 0 0
+
+V 21 2478 6149 4117 2265 * 4548 * 4647 3512 4446 * 6269 * 4149 3745 3932 3998 4253 * * 21
+ 0 * * 0 * 0 * 9634 1065 1065
+
+I 22 4001 * * * 3788 * * 1842 * 1921 * * * * * 6097 3540 2249 * 6485 22
+ 0 * * * * * * 9652 0 0
+
+Y 23 3973 6486 * 5450 6211 5044 2009 6076 * 6566 * 4703 * 5489 6374 2382 2130 5313 * 3913 23
+ 0 * * * * * * 9652 0 0
+
+N 24 3539 * 2951 2421 6647 5452 4155 * 3294 4330 * 4295 5799 3340 3035 5092 5259 * * 6343 24
+ 0 * * * * * * 9652 0 0
+
+S 25 1779 4051 * 5456 3593 4630 * 4137 * 3347 5363 * * 5616 5476 3188 4508 2987 * * 25
+ 0 * * * * * * 9652 0 0
+
+L 26 2870 6268 * * 6323 * 4343 2545 * 1852 3846 * * * 6525 6622 4387 2557 * 4970 26
+ 0 * * * * * * 9652 0 0
+
+H 27 2338 3991 6673 6021 5378 5609 4111 4100 * 4749 5847 * * 6725 4733 2699 4199 2167 * 5591 27
+ 0 * * * * * * 9652 0 0
+
+L 28 3423 * 3273 1850 * 6198 5782 6068 3349 5173 * 4000 * 3611 3626 4282 3708 * * * 28
+ 20 6198 * 0 * * * 9652 1003 0
+
+G 29 2828 5847 4631 4525 5556 4921 4712 2787 6977 3370 * 6012 6198 * * 4275 2333 3331 5469 6076 29
+ 15 * 6622 * * * * 9652 0 0
+
+L 30 4476 6175 * 3588 2622 3220 * 3896 * 1898 3601 6705 5039 * * 5353 4037 5784 6518 5967 30
+ 17 6408 * 0 * 0 * 9664 1000 1000
+
+D 31 4102 6532 2785 4403 * 1744 4122 4805 3684 3965 * 3247 * 4953 6525 6724 6374 5456 * 6356 31
+ 26 * 5799 * * * * 9652 0 0
+
+I 32 2672 4120 * * 3286 * * 3956 1839 4621 5266 6039 * * 5579 * 4259 2606 * 5650 32
+ 0 * * 0 * 0 * 9736 1065 1065
+
+P 33 5004 * 3581 4751 * 5163 * * 4296 * * 5250 736 5031 5805 4267 4562 * * * 33
+ 0 * * * * * * 9761 0 0
+
+K 34 3809 * 4211 1860 * 5210 6110 4915 3760 4574 4759 5409 2882 4288 4972 5035 4708 4040 * * 34
+ 0 * * * * * * 9761 0 0
+
+G 35 2758 * 2788 2467 5618 3810 * 5451 3518 6736 6092 3632 5993 4785 5447 3915 4266 * 5769 6897 35
+ 318 * 2339 * * * * 9761 0 0
+
+K 36 3800 * 1482 4715 4944 4085 4407 * 4302 4492 * 4602 5044 * 5135 3948 4674 6199 5053 4295 36
+ 25 5879 * 2322 322 * 0 9295 1000 2969
+
+H 37 5746 4613 5999 5117 5256 * 6093 2330 4617 3030 6516 * * 3706 3613 * 4363 1960 * 5777 37
+ 0 * * * * 0 * 9295 0 2969
+
+A 38 3544 * 6033 4947 2525 6533 5494 6527 2924 * 4139 4380 * 4396 3040 5805 5242 4422 6592 2816 38
+ 0 * * * * * * 9761 0 0
+
+I 39 4770 * * * 6317 6143 4582 2234 6446 5456 4645 6598 * 3058 6008 4907 3451 1567 * * 39
+ 0 * * * * * * 9761 0 0
+
+R 40 3685 5194 * * 4435 6120 6087 2695 * 3024 3317 * * 6835 2242 5464 3809 3390 5406 6818 40
+ 55 4732 * 2322 322 * * 9765 1320 0
+
+F 41 3090 * * * 2386 6454 * 2684 * 2656 4486 * * * * 5477 5846 1996 5879 6206 41
+ 84 * 4139 * * * * 9765 0 0
+
+L 42 4876 * 4681 3791 * 6987 3017 4870 * 3507 5360 3241 * 3738 3312 3847 3173 3498 * 5235 42
+ 0 * * * * * 0 9622 0 1473
+
+C 43 4525 5071 3977 1882 6215 5593 6619 4828 6315 3592 6431 * 3312 5082 3751 5565 4901 3395 5123 5469 43
+ 93 * 3998 * * 0 * 9627 0 1473
+
+L 44 5102 5843 4156 3861 3881 * 3020 2803 5111 3226 4845 5884 * 6285 4690 5774 4983 3002 * 3638 44
+ 145 * 3388 * * * 0 9644 0 1492
+
+E 45 3748 * 3078 2421 * 4135 5961 * 4612 5656 * 5576 2371 4949 7873 3226 3469 * * 4695 45
+ 0 * * * * 1333 729 9356 0 2346
+
+K 46 2688 6271 2667 3853 * 4317 6131 5728 4746 6378 6331 4516 2452 3871 4622 3790 6405 4620 * * 46
+ 45 5917 6131 2322 322 0 * 9567 1050 1794
+
+E 47 4359 * 2859 2568 * 3064 6508 * 3896 5768 5604 4633 5206 3625 5376 3460 3732 5198 * 4563 47
+ 13 * 6777 * * * 0 9732 0 1000
+
+D 48 4642 6101 2364 3431 6611 6000 2734 6038 4722 4490 * 3078 4382 4147 3864 5003 6587 6356 6721 5069 48
+ 0 * * * * 0 * 9723 0 1100
+
+F 49 4729 5781 6712 * 2682 * 5872 3492 * 2789 2561 * * 5461 6337 4772 6051 3981 3177 3353 49
+ 99 4058 7337 1930 439 * * 9770 1757 0
+
+Y 50 3080 5622 6449 5630 3986 4620 6582 3121 5866 3617 4626 5338 6212 6526 4116 4490 3313 3200 5669 3626 50
+ 0 * * * * * 0 9709 0 1172
+
+Y 51 5034 * * * 1925 * 5320 2785 5738 3556 4691 * 5334 6829 4463 * 4104 2882 * 3048 51
+ 0 * * * * 1250 787 9709 0 1172
+
+P 52 2589 6288 4204 5274 6626 1349 6410 * 5136 5053 5290 5415 3504 4671 4745 4209 * * * * 52
+ 455 * 1887 * * * 0 9697 0 1050
+
+F 53 3880 * 2553 4034 5884 1677 6522 * 4510 4100 * 4620 3232 * 4186 4606 6092 * * * 53
+ 1389 694 * 1883 456 69 4424 9003 4774 3922
+
+D 54 2553 * 3393 3742 * 1850 6733 * 3841 * * 4058 4041 3928 4747 5917 3990 * * * 54
+ 39 6128 6326 1000 1000 * 0 8996 1028 1050
+
+R 55 3822 * 4271 3537 * * 6310 6538 3559 5088 6529 5686 3592 5476 1956 3175 3087 5489 * 6684 55
+ 93 4356 6173 192 3002 704 1373 9022 1670 1315
+
+S 56 3198 * 2785 3278 5291 3480 5149 6228 4799 5350 5260 4489 6670 5199 5241 2690 2871 * * * 56
+ 98 6398 4212 0 * 1183 838 9004 1000 1182
+
+D 57 3164 * 2194 2358 * 4308 4777 6687 4876 6115 5851 4492 3564 4009 4403 4804 * 4709 * * 57
+ 75 * 4311 * * 385 2094 8994 0 1586
+
+D 58 3738 * 3320 5242 6050 3572 4936 * 4185 * * 3346 1754 4796 3807 4234 7001 6062 * 4897 58
+ 0 * * 0 * 1201 824 8937 1050 1525
+
+Y 59 3384 3085 * * 2390 4851 4813 5107 * 4031 3062 6462 6630 6530 4406 * 4105 3562 * 3424 59
+ 15 6550 * 0 * 1642 557 9044 1264 1250
+
+T 60 2556 4577 * * 5403 6343 * 2116 * 2847 4227 * 3817 * 6027 6249 3960 2598 * * 60
+ 32 6638 6383 1000 1000 0 * 9035 1000 1133
+
+V 61 6812 5474 5811 5159 2687 6806 3280 3616 5948 3387 3670 4571 * 4829 4579 6070 5159 3053 7130 3409 61
+ 0 * * * * 0 * 8670 0 1050
+
+I 62 4696 5163 * * 4700 5424 * 1094 * 3533 4948 * * * 6927 * * 1856 * * 62
+ 26 * 5824 * * * * 8740 0 0
+
+E 63 5552 6445 4162 2699 5090 6527 3545 5452 3951 * * 3085 * 3167 4716 2903 3033 6562 * 6612 63
+ 0 * * * * * 0 8745 0 1165
+
+I 64 4617 5951 * * 4508 4465 * 1689 * 2734 6605 * * * * * 6414 1429 * * 64
+ 28 * 5726 * * * 0 8745 0 1165
+
+N 65 3601 6445 4000 3932 5306 * 4326 * 2495 5005 6077 5660 * 4117 3587 3873 2543 4601 6565 5194 65
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+
+L 66 3399 4374 5858 * 5250 4514 4841 2640 5779 2377 4329 * * * 5821 2869 3859 3738 6005 * 66
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+
+M 67 3861 6925 * * 2953 4724 * 2298 6455 2913 3502 5411 4999 6678 3258 5194 6517 5474 5044 4057 67
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+
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+
+G 69 5000 * 6374 6588 6886 941 5969 6157 3966 6868 6839 4973 4587 5444 3802 4543 4061 4848 * * 69
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+M 71 6679 * 2766 4655 * 3998 6163 * 5139 * 6423 3420 4091 6693 6563 1818 2113 * * * 71
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+
+E 72 3346 * 2550 3073 7233 5939 4776 4626 4242 3895 6669 * 3360 3916 4138 5806 3821 3771 * * 72
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+
+G 73 3037 * 3304 1090 * 4538 5945 * 4293 * * 5712 5719 3911 * 4346 5109 6129 * * 73
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+
+T 74 3542 * 4215 3602 5682 6163 6891 6218 4018 4216 5671 5161 * 1541 4248 4979 3750 4601 * 5973 74
+ 0 * * * * * * 8740 0 0
+
+K 75 6869 4810 6779 5741 6822 * * 4561 947 4492 6642 3371 6758 5499 3213 * 5024 5441 * 6163 75
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+I 79 2433 6524 * * 4616 5104 6642 2981 * 3874 4095 5385 * * 7953 2457 4379 3347 * 3130 79
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+I 101 6853 6098 * * 2132 * * 1562 * 2442 4799 * * 6449 * * 6753 3312 * 3868 101
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+M 114 5419 * 4833 3763 * 2547 5210 4362 2988 6922 5133 6644 * 4845 3896 3834 2804 3128 * 5739 114
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+G 116 3024 * * 5833 2252 3348 6084 3694 4763 2841 5214 5944 * 3993 6407 6003 * 2902 5979 * 116
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+E 118 5590 5153 2072 2310 * 4359 5622 4231 4422 * * * 4032 3890 4231 5298 4512 3894 * 5362 118
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+A 119 4231 * 4437 * * 5878 * 2896 2894 2458 5618 * 3814 4541 2577 5306 5368 3622 * * 119
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+ 0 * * * * 0 * 4047 0 1111
+
+D 123 3689 * 2428 2364 * 1449 * * 3312 * * * * * * 3725 * * * * 123
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+Y 124 * * * * 2504 * * 3093 * 3184 * 2971 * * * * * * * 1092 124
+ 0 * * * * * * 4011 0 0
+
+D 125 2620 * 1326 * * * * * 2853 * * 2727 * * * * 2746 * * * 125
+ 0 * * * * * * 3178 0 0
+
+I 126 * * * * * * * 732 * * * * * * * * * 1329 * * 126
+ 0 * * * * * * 2814 0 0
+
+Y 127 2290 * 1370 * * * * * * * * * * * 2335 * * * * 2249 127
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+V 128 * * * * * * * * * 2023 * * * * * * * 408 * * 128
+ 0 * * 0 * * * 2467 0 0
+
+//
+�HHsearch 1.5
+NAME 2f38e0381f5a1497aa929335a94cdbc7
+FAM
+FILE 2f38e0381f5a1497aa929335a94cdbc7
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:18:21 2013
+LENG 89 match states, 89 columns in multiple alignment
+FILT 113 out of 1640 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
+>ss_conf PSIPRED confidence values
+98999999999983670089999999998778999938699999999993799999999999998688999949699999999867899
+>Consensus
+ixxxeFxxxxxxxxxxxxxxxxxxxxFxxxDxxxxgxixxxexxxxxxxxxxxxxxxxxxxxxxxxdxxxxgxixxxefxxxxxxxxxx
+>2f38e0381f5a1497aa929335a94cdbc7
+MNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKKTSLY
+>gi|66808853|ref|XP_638149.1| EF-hand domain-containing protein [Dictyostelium discoideum AX4]gi|74996819|sp|Q54MZ4.1|MCFB_DICDI RecName: Full=Mitochondrial substrate carrier family protein Bgi|60466585|gb|EAL64637.1| EF-hand domain-containing protein [Dictyostelium discoideum AX4]
+---------------------------------------MSNNNNNNNNNNNNNNNNNN----NNNNNNNNDKNNNNNIDSSIK-----
+>gi|330796947|ref|XP_003286525.1| hypothetical protein DICPUDRAFT_77398 [Dictyostelium purpureum]gi|325083506|gb|EGC36957.1| hypothetical protein DICPUDRAFT_77398 [Dictyostelium purpureum]
+ITKDEAISYF-KNSGSKFPERNASYLFKAMDLDHDGKLTLDEIRAGLIKEYSEkledTIELDIDAFFLKHDINKDQKIHKKEMIQYFEDLGT-
+>gi|313213218|emb|CBY37065.1| unnamed protein product [Oikopleura dioica]gi|313233994|emb|CBY10162.1| unnamed protein product [Oikopleura dioica]gi|313246556|emb|CBY35452.1| unnamed protein product [Oikopleura dioica]
+-------------LEDDELQSRLRKLVVRMDHNRDGYVDKEELTSWGLVSIYNIQGKDGREDYEFLLHDGASg-LDFDHLSDDI------
+>gi|74189848|dbj|BAE24569.1| unnamed protein product [Mus musculus]
+---------------EKEPIAASTNRGKDLIGVQNLLKKHQALQAEIAGHEPRIKavt----------------------------------
+>gi|67471481|ref|XP_651692.1| EF-hand calcium-binding domain containing protein [Entamoeba histolytica HM-1:IMSS]gi|56468461|gb|EAL46305.1| EF-hand calcium-binding domain containing protein [Entamoeba histolytica HM-1:IMSS]
+ISFYEYMGMHK-------FLEICYNVFIQCDTNRSGTMEPHEIIPALRILGFFVNQRTAIVLHRLFAHGs---tICDLNCWIALCA-----
+>gi|256075808|ref|XP_002574208.1| mitochondrial solute carrier [Schistosoma mansoni]gi|238659407|emb|CAZ30441.1| mitochondrial solute carrier, putative [Schistosoma mansoni]
+IHYDEFTQIIH-V-----KYNFSYTCIYFSYK--TGTITVDQFKSIILQLkSRLLTPLIKENLLTVVlqsemdGGR----ITFAYYMAF-------
+>gi|221117548|ref|XP_002159552.1| PREDICTED: similar to apoptosis-inducing factor (AIF)-like mitchondrion-associated inducer of death [Hydra magnipapillata]
+-------------VQYTKISDYVEMLY---DTEIKNGKNLSQFEELIEKGKMKYPHLSyhfkelkklynSKVLKLESEGs-----LSLKDLHSLAKIVDS
+-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 4850 5406 * * * 5080 * 1416 * 2053 3520 * * * * * 5022 2486 * * 1
+ 43 5080 * 0 * * * 9486 1202 0
+
+N 2 * * 1479 5719 * 4183 6101 5958 6170 * * 3232 5745 * 5675 2182 2801 * * 6149 2
+ 0 * * * * * * 9583 0 0
+
+F 3 * 6335 * * 1331 * * 6084 4434 2061 6509 5859 4998 * 4450 5735 * 4694 * 2980 3
+ 0 * * * * * * 9721 0 0
+
+G 4 3805 * 3322 2200 * 5190 * * 3313 5982 5999 3887 4159 6034 4246 3096 3826 6100 * 4114 4
+ 0 * * * * * * 9746 0 0
+
+D 5 5204 * 3742 912 * * * 5866 3952 6104 5718 4166 * 3736 6345 3644 * * * 5137 5
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+
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+ 0 * * * * * * 9768 0 0
+
+L 7 4605 3895 6076 6281 * * 5053 2689 4019 2296 4031 6093 * 6148 4331 4630 3658 3047 * 4911 7
+ 0 * * * * * * 9768 0 0
+
+T 8 3109 4475 4230 3755 5213 4035 5077 5164 3417 4224 4631 4087 * 3817 3685 4564 3920 4307 * 6331 8
+ 22 6014 * 0 * * * 9774 1088 0
+
+V 9 2749 * 6031 5250 2708 3963 5425 3247 * 2749 4206 6027 * 6336 6071 3907 4399 3987 * 4597 9
+ 0 * * * * * * 9842 0 0
+
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+ 200 * 2950 * * * * 9914 0 0
+
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+ 326 3626 3041 1363 710 316 2344 9732 1868 2732
+
+Q 12 4078 4878 6295 3426 6121 4048 4651 6021 3453 4479 4963 4863 3655 4174 4414 3733 3906 3685 * 3899 12
+ 45 * 5041 * * 2450 292 9701 0 2729
+
+K 13 5827 * 6162 3629 3222 * 6092 3203 2933 2640 * * 4998 3458 3826 6044 4739 3474 5928 6168 13
+ 66 5908 5145 0 * 2423 298 9764 1009 2736
+
+M 14 4565 5016 * 4481 4344 * 4618 3648 5985 1911 4346 6104 4817 5024 4258 3367 4528 3592 * 5310 14
+ 60 4628 * 2528 275 1366 708 9982 1388 2733
+
+S 15 6666 3891 4488 4157 5140 3310 4672 5466 3109 3755 4013 3634 4604 4724 4517 3566 5210 5357 * 4635 15
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+
+E 16 4205 * 4321 3399 4198 5174 6100 * 3238 4716 6300 3427 3073 3590 4182 3500 5050 6237 5383 4586 16
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+
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+ 66 6509 4878 1000 1000 * 0 10408 1002 1418
+
+K 20 4243 * 4760 2837 6353 6629 5753 3665 3674 2724 4946 6582 4610 4323 4057 3884 3674 4147 6264 6446 20
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+
+E 21 4278 * 2632 2152 5783 4624 * 4543 3958 4227 5909 6524 6550 4106 3522 4533 4209 4577 * 5613 21
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+
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+
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+
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+
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+ 11 * 7034 * * * 0 10592 0 1000
+
+A 26 2234 4884 * 6841 5635 6404 5748 2831 5149 2175 5639 * * 5843 5528 5283 4692 2763 5319 6927 26
+ 50 4874 * 671 1428 * 0 10591 1482 1142
+
+F 27 6187 * * * 543 6231 * 5682 * 4079 5533 * * 6415 * 4929 * 5248 5924 3335 27
+ 29 6591 6710 3000 193 * 0 10591 1000 1142
+
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+ 45 5582 6688 1000 1000 * 0 10523 1198 1372
+
+L 29 3691 6447 4573 3924 5907 6963 4972 4777 3106 2865 3987 6854 * 3606 4248 4007 4258 3572 7081 4499 29
+ 11 7081 * 2345 316 2275 334 10560 1101 1551
+
+F 30 3861 3799 6697 * 2397 5624 5283 3663 5078 2474 4222 6968 * * 5796 6114 5168 4607 6799 2703 30
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+
+D 31 5721 5685 571 4601 * 5351 * 6165 6680 * * 4519 6430 6593 4242 5129 4262 * * * 31
+ 12 6945 * 0 * 275 2527 10580 1000 1847
+
+D 32 4032 * 6263 4330 * 4655 6574 4196 2310 3583 * 4550 3954 5555 4053 3197 2865 5296 * 5282 32
+ 83 5198 5136 721 1346 0 * 10569 1402 1000
+
+D 33 4678 5763 1879 3043 5440 4388 7064 * 5322 * 6079 2159 5945 4822 5107 3781 5017 6132 * 6824 33
+ 12 6897 * 0 * 425 1971 10478 1000 1735
+
+E 34 5000 6340 3863 3947 * 2401 4002 5660 3014 * 6832 2828 * 4016 3266 3541 5256 * * * 34
+ 37 6881 5908 2322 322 * 0 10554 1000 1037
+
+T 35 5339 6605 1971 3899 6431 7123 6806 5711 2849 5932 6083 2850 * 5623 5200 2975 3568 5133 * * 35
+ 28 6710 6683 0 * 0 * 10549 1000 1385
+
+G 36 4843 6667 3459 5183 * 726 5814 6838 6889 6238 6665 4653 * 6024 4166 5432 5438 6926 * 6786 36
+ 36 5350 * 1197 827 0 * 10598 1562 1007
+
+K 37 5548 5223 6986 4048 3655 4940 5184 5511 3256 3700 5309 4770 4813 4725 4306 3709 3022 4336 5982 3479 37
+ 0 * * * * 0 * 10564 0 1000
+
+I 38 * * * * 5540 * * 1605 4934 1538 4473 * * 6479 * 6140 * 2304 * * 38
+ 14 * 6745 * * * * 10571 0 0
+
+S 39 5900 5423 2418 3638 7078 4779 * 6993 6238 4719 * 3863 4621 7021 6758 2189 2164 6793 * 6420 39
+ 0 * * 0 * 0 * 10598 1007 1007
+
+F 40 3387 5670 5551 3759 3620 5285 6247 3900 2942 3092 4380 * 4304 4813 3762 5002 5819 4391 6464 4674 40
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+
+K 41 4255 * 2976 2068 6855 4520 4972 4610 3841 6788 5691 3679 4991 3569 4215 3653 5421 6905 * * 41
+ 15 6601 * 6000 23 * * 10647 1000 0
+
+N 42 4359 * 2340 1252 * 6558 * 5983 5976 * * 3997 7091 3407 6823 5079 5003 6808 5434 5288 42
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+
+L 43 5983 6008 * * 2027 * 7006 3065 * 1697 4856 6189 * * 6499 6808 5732 2753 5812 4859 43
+ 98 4165 6610 1629 563 0 * 10629 2194 1007
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+K 44 4360 5997 6528 3968 6594 3580 4798 3614 2814 3521 * 4950 6326 3612 2890 4518 4975 3815 6383 * 44
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+
+R 45 4137 * 3806 3032 6148 6868 5049 5238 2737 4302 6541 3776 5508 3562 3564 3238 3804 5894 * * 45
+ 23 * 6002 0 * 1097 909 10598 1007 1253
+
+V 46 2845 4699 * 6244 3578 4631 6891 2788 * 2193 3976 6193 * * * 6642 5079 3004 4194 5874 46
+ 47 5357 6976 1553 601 1229 803 10597 1426 1365
+
+A 47 4104 4497 6733 * 4124 * 6643 2522 * 1900 2930 6196 * 6792 6898 6769 4834 2711 * 5670 47
+ 30 7053 6266 2807 222 * 0 10624 1000 1299
+
+K 48 5489 6653 4196 3557 * 3707 5716 6018 3117 4480 5199 3584 * 3595 2838 3273 4682 3769 * 6917 48
+ 40 * 5189 1585 585 2167 363 10594 1000 1537
+
+E 49 2955 6859 4331 3347 6155 5274 * 4632 3304 3754 6887 4054 4746 4651 4274 3509 3528 3880 * 5711 49
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+
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+E 52 6546 5660 4473 3835 3436 5741 4287 4335 4599 3604 5800 4087 4168 4852 4084 3258 6115 3053 * 4223 52
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+
+N 53 4225 6695 4176 3671 6218 3656 5976 4459 2957 5944 6700 3085 3108 4410 3691 3833 5198 5124 * 6672 53
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+T 55 3423 5767 2991 6577 5920 5086 5260 5302 3723 4985 7051 3398 3235 6819 5693 2964 2958 4902 * 5619 55
+ 64 4537 * 2576 265 * 0 10516 1795 1290
+
+D 56 3976 * 3422 2542 * * 4933 4489 3170 4171 5889 4064 3653 3862 4048 * 4064 4788 * 4433 56
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+
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+Q 77 3656 * 2288 2229 * 6165 * 5323 3781 4463 * 3938 5175 3862 6773 3432 4781 5946 6911 5554 77
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+M 83 4325 4281 * 6062 4296 5327 * 2897 6232 1929 2936 6432 * * * * 5712 2783 5507 3853 83
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+K 84 3620 6264 6408 4150 5474 6717 5539 4365 2472 4345 6416 3260 5270 3388 3514 3498 3879 6399 * 6305 84
+ 0 * * * * 0 * 10061 0 1024
+
+K 85 4458 * 3824 3706 * 3229 5430 5850 2643 6131 * 3222 * 4714 2550 3030 4402 * * * 85
+ 47 * 4969 * * * * 9835 0 0
+
+T 86 4203 5781 4267 4492 4732 * * 3895 3336 2369 * 3681 * 4853 4468 4631 4253 2989 4643 5868 86
+ 25 5868 * 501 1769 0 * 9291 1142 1207
+
+S 87 3812 * 2696 3843 * 4050 * * 5542 5264 * 4526 1985 * 5553 3086 2850 5428 * * 87
+ 0 * * * * * * 9120 0 0
+
+L 88 4896 * 4872 5062 5116 * * 3111 3868 2192 * 2802 * 4835 4882 3317 3985 3402 * * 88
+ 0 * * * * * * 8191 0 0
+
+Y 89 * 4007 * * 2515 * 4010 * 3054 2103 * * * 4051 * * * * 4013 2150 89
+ 0 * * 0 * * * 6487 0 0
+
+//
+�HHsearch 1.5
+NAME 2f4c86088a47ef73c12ffc801e19fb3c
+FAM
+FILE 2f4c86088a47ef73c12ffc801e19fb3c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:14:23 2013
+LENG 227 match states, 227 columns in multiple alignment
+FILT 149 out of 1419 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEEEC
+CCCCEEEEEEEEEEEECCCCCCEEEECCCCCEECCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEEEECCCCCCEEEEEE
+EECCCCEEEEEEEECCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9399576868996899899999972888888589999918999828999995478850105555772899852778705799812531143548999942
+8862561248999974033364488618742211697599999945757998699988995457731103485499789999999960456797799999
+948898789999920569999498999
+>Consensus
+xxxxxxpxxxxvxxGxxvxLxCxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxLxIxxvxxxDxgxYxCxvxx
+xxxxxxxxxxxlxvxxxxxxxpxxxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxxxxxxxxxxxxxxxxxgxxxxxsxLxixxxxxdxgxyxCxv
+xxxxxxxxxxxxxxxxxxxxxxxxxxx
+>2f4c86088a47ef73c12ffc801e19fb3c
+EVQLQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKL
+GWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNV
+AHPASSTKVDKKIEPRGPTIKPCPPCK
+>gi|1853|emb|CAA32113.1| mu-immunoglobulin C(U) [Suncus murinus]
+----------------TSQLICQASGFSPRTIVMSWL--QRGEPVQPSL-VSTSAVEAEPKGSGPTTFRVI-------SRLTITENEWLSQREFTCQALH
+KG-LTFQKNVSSVCmGDDTSTGISVFLLPPTFANIfLTQSAQLTCLVTGLATyDSLDISWsrQNGEALQTHVNISESHPNSTFTAKGHASVCREEWEsGE
+KFTCTVQHSDLPSPLKQSLSR------------
+>gi|332835951|ref|XP_003312984.1| PREDICTED: b7 homolog 6-like [Pan troglodytes]
+KVEMMAGGTQITPLNDNVTIFCNIFYSQPLNitsmgITWFWKSLTFDKEVKVFEFF----GDHQEAFRPGAIVSPWRLKSG-DASLRLPGIQLEEAGEYR
+CEVVVTPLKAQGT-VQLEVV-----ASPASRLFLDQVGVKENEGKYMCESSGFYPEAINITWekqtqkfpHPIEISEDVITGPTIKNmDGTFNVTSCLKL
+NSSQEDpGTVYQCVVRHASLHTPLRSNF--------------
+>gi|334323375|ref|XP_001366403.2| PREDICTED: butyrophilin subfamily 2 member A2-like [Monodelphis domestica]
+QFTVVAPAKPLlVMVGEDAILHCHLFPKKNAEQmEVRWFRSQFSPAIYVY--KDGKNRDEEQMEEYRSRTTFMRDnIKDGSVALKIHNVTAFENGRYHCY
+FQE--GRSYDEAFIDLKVASMGSDPLIEI-----TGYEYGWIQLECTSAGWYPQP-RVEWrnLSEETIPSLEENLVPSEDGLFIVKLSVNITDHT--VVS
+VFCSIQNSLLSQELLAMMSIPE----------
+>gi|148690707|gb|EDL22654.1| mCG22132, isoform CRA_c [Mus musculus]
+---LQVQRIVKAQEGLCIFVPCSFSSPEGkwlnRSpLYGYWFKGIRKPSLSFP--VATNNKDKVLEWEARGRFQLLGDISKKNCSLLIKDVQWGDSTNYF
+FRMERGfERFSF-K-EEFRLQVeVpdLHENPSHLE------VQQGQSLRLLCtadsqppaTLSWVLEDqvlswsSPVgsrtlaleLPW----------VK
+AG------------dsghytcqaenrlgsqqhtldlsvlceyd---lpkVPGPKkDkGVTSGYKqsdycAACVGDPMSDAPThpqlpslggmfcperraw
+pvwnqFP-------------
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+-------------------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAAQN-----------
+---tqrkweaagvaeqw----RAYlEGECLEWLRRYLEKGK-----------------et--LQ--raEPs-SQSTIP-----
+>gi|47215549|emb|CAG06279.1| unnamed protein product [Tetraodon nigroviridis]
+--------------------------------------------------------------------------------ILIRNLQPSFNADYVCTAKV
+KGVEKTSKAFSINVIQKLRFPPYVFLEMDEYVRIVGEELKIRCMTHNP-NFNYNVTWNYTTKSVSMRHHAVYLHREnRLDIQSILTISAVVLaDTGNISC
+IGTNEAGVNSSNTYLL-------------
+>gi|301623029|ref|XP_002940823.1| PREDICTED: beta-2-microglobulin isoform 1 [Xenopus (Silurana) tropicalis]gi|301623031|ref|XP_002940824.1| PREDICTED: beta-2-microglobulin isoform 2 [Xenopus (Silurana) tropicalis]
+----------------------------------------------------------------------------------------------------
+----------------SNISPPVVKVYTAEPVE-FGKKNELICYAYDYHPPRMEISLlkNGVEIPDT-kQKDPSFHHNWKYYTMMSAHVHIDS--DD--k
+vE-----clvah-------------------------
+>gi|312373456|gb|EFR21197.1| hypothetical protein AND_17411 [Anopheles darlingi]
+------KPVMDAVEGQSFSVMCNATGKPV--PEFQWIKQGTQQNAADL-----------------DRFSVN----AITGQLDISKVEQQDHDSYACIARN
+P-AGQSESVMKPNVL----IRPKIIELINITVSEDTE-AVFVCKAFGRPEPEITFRRygtleeysIGLQVSDDRIQLEQSVDVDKGESVGTLRISKVTTt
+DDGLYECIARNRGDvafkAGHITVEYSPI-----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 7596 0 0
+
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+
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+
+L 4 5838 * * * 4226 * * 2851 5966 1715 3921 * * * * 5640 3376 1798 * * 4
+ 23 5966 * 0 * * * 9577 1016 0
+
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+ 0 * * * * * * 9856 0 0
+
+Q 6 3102 * 5981 4155 * 4465 5253 * 3525 3683 5893 4811 5200 1855 5179 4302 4587 3332 * * 6
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+
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+
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+
+A 9 4089 * 3572 3620 6475 4679 4186 5902 4650 3574 * 3698 4640 4024 5445 2330 3401 4837 * * 9
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+
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+
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+V 12 2149 6616 * 6986 * 4497 5950 3753 5743 3787 5696 6689 4744 5668 5768 5208 4684 1539 * 5935 12
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+
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+
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+
+G 15 6664 * 5147 4265 7193 426 * * 5797 * * 4540 * 5450 5541 4768 * 6940 * 6906 15
+ 11 7047 * 1585 585 * * 10735 1000 0
+
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+
+S 17 4537 5315 3517 4294 6386 7283 6105 * 4264 * * 3052 3225 4174 4427 2470 2722 4408 * * 17
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+
+V 18 2067 * * 6145 4998 5717 7187 3687 6518 3837 4053 * 6225 * * 6280 4895 1311 * 6930 18
+ 0 * * * * 0 * 10799 0 1169
+
+K 19 6108 * 5017 4191 5844 6630 5525 3481 4301 5080 6387 4007 5081 4822 4318 3244 1811 3541 * 6046 19
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+
+L 20 * * * * 3303 * * 2553 * 695 4869 * * 6723 * * * 3900 * * 20
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+
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+
+C 22 5655 135 * * 5839 6871 6420 5917 * * * * * * * 6815 * 7327 * * 22
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+
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+
+A 24 3357 6888 * 6603 2862 6229 6955 3189 5841 2862 * 7055 4476 7091 * 4994 4626 2365 * 2896 24
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+
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+
+G 26 3814 7242 4451 3931 * 1905 6758 5329 4598 4491 5171 3069 5589 3877 5289 3560 4225 6215 * 6492 26
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+
+Y 27 4289 7138 4569 4760 3156 4192 4635 7041 4147 4141 5962 4543 4115 3924 4841 2872 3614 4496 6734 4458 27
+ 68 * 4447 * * 208 2896 10667 0 2891
+
+T 28 4542 6951 3406 4145 6875 5047 6736 5949 3603 4169 * 4087 2502 4470 5424 2883 3295 4695 7430 6614 28
+ 226 5771 2984 2664 248 786 1251 10724 1226 1906
+
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+ 413 5915 2107 536 1689 2140 371 10657 1113 3577
+
+T 30 4103 * 2987 4321 5338 3414 5590 * 3379 5321 6249 4232 3590 4762 4144 3424 2920 6193 * 5421 30
+ 138 4372 4548 953 1048 3658 119 10362 1464 6153
+
+N 31 6843 * 2360 3614 * 4197 4179 4549 4332 3866 * 3504 4060 4502 4441 3976 4548 3856 6937 5481 31
+ 189 3023 * 645 1471 352 2208 10368 2638 6149
+
+Y 32 7413 * 4001 4837 3894 4815 5294 3556 5003 3161 5385 5061 3112 4620 5615 3809 3784 3218 * 4100 32
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+
+W 33 4173 * 4529 4892 5678 5422 4857 3339 4952 5043 4508 5311 5083 4042 4330 2796 3297 3472 6027 3868 33
+ 16 6516 * 0 * * 0 10755 1079 1845
+
+I 34 5352 7078 * * 5016 5950 * 2095 5511 2061 5773 * * * 6942 7006 6159 1459 * 6234 34
+ 0 * * * * 2640 252 10755 0 1845
+
+N 35 5044 * * 3560 3480 5046 4901 4558 4566 4327 6746 4092 * 4102 3897 3052 2851 4562 6793 3425 35
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+
+W 36 * * * * 5047 6912 * 5975 6407 5306 * * * * * * * 4551 208 * 36
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+
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+ 48 * 4932 * * * 0 10728 0 2176
+
+K 38 * 6354 * * 4931 6766 4870 5145 1805 4604 5915 5034 * 3495 2121 5152 5308 4144 4283 5104 38
+ 63 7086 4824 1585 585 1971 425 10690 1000 2800
+
+Q 39 5258 * 2982 4559 7386 3849 5209 6891 4604 4676 5336 4219 6186 2042 4137 3965 4058 3619 7066 6810 39
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+
+R 40 4408 6293 3511 4204 5820 3705 4821 5054 3024 4732 5129 4379 4134 4626 2938 4181 3889 5800 * 4940 40
+ 355 * 2197 * * 2225 347 10590 0 4317
+
+P 41 4920 * 3430 3707 4653 4385 6573 4702 3809 4021 * 4015 1919 5007 5445 3334 5252 5481 * * 41
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+
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+
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+ 104 6850 4044 1585 585 * 0 10668 1000 3222
+
+G 44 3132 * 3988 3339 5464 3164 5534 4846 5943 4796 * 4076 3023 4446 4191 3244 3931 5799 6757 * 44
+ 84 4807 5606 542 1675 1981 421 10607 1420 4178
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+L 45 5378 * 5133 4828 5287 6660 6999 3043 5282 2601 4916 5503 2229 5262 3894 4461 4713 3300 6608 * 45
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+
+E 46 4968 * 3863 2479 5589 4960 6939 4771 4302 4503 * 4417 5167 3042 3446 3192 4102 4236 * 5717 46
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+
+G 49 2442 4809 6189 6394 3248 3062 5332 3513 * 3223 * 6493 * 4636 * 3996 3764 3785 5174 5493 49
+ 96 6253 4278 1585 585 5224 39 10051 1101 6797
+
+N 50 4168 * * 3775 3626 4798 5189 5336 4005 4792 5168 6515 4654 6118 4108 2993 3516 4672 4507 2673 50
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+I 51 5153 6585 5505 6383 3674 6782 5809 2237 4277 3372 5288 5816 * 5106 4132 5058 4167 2704 6007 3685 51
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+
+S 55 6309 6221 2786 4276 4551 2838 5515 6253 3484 5483 7288 4146 5342 6416 4579 2848 3058 5389 * 5366 55
+ 153 5002 3846 1240 795 2037 403 10091 1327 6971
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+S 56 6410 * 3641 5339 * 2026 6589 5267 2966 5375 * 3479 4119 4591 4223 3608 4423 4505 * 4860 56
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+
+Y 57 4523 6677 3491 4949 6474 3746 5015 4551 4363 4808 * 4897 5840 4809 3510 2695 3011 3072 * 6663 57
+ 0 * * 2807 222 2868 213 10360 1000 6483
+
+T 58 5514 * 4884 4824 5552 5151 4680 4127 3082 4746 6498 4458 3592 5560 3724 2708 3296 3209 6868 * 58
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+
+T 187 4954 6615 4603 4403 6042 5859 5103 5062 3718 4417 6826 3777 3337 5292 3222 3061 2839 3924 * 5961 187
+ 13 * 6802 * * * 0 10230 0 1000
+
+S 188 3516 6591 3446 3705 5721 4902 4967 4424 3779 3650 5665 4282 3147 5895 5065 3473 4321 3799 7015 * 188
+ 12 * 6875 * * 1048 954 10199 0 1126
+
+S 189 3612 6789 5343 2980 6647 4818 4652 6043 5624 4356 * 6879 4776 4505 4779 2381 2670 3137 * * 189
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+
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+ 222 * 2808 * * 1402 686 10200 0 1227
+
+W 191 3821 6664 5017 3102 5009 5479 5725 6373 4163 2979 5012 6972 4638 4194 3747 4646 4602 4286 2606 * 191
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+
+P 192 * * 911 3576 * * 4730 6626 4374 * * 3642 4236 4746 4362 4090 6577 * * * 192
+ 900 1107 * 193 3000 539 1681 9902 5807 4038
+
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+ 15 6623 * 0 * 2159 366 10160 1012 1970
+
+Q 194 3681 * 4213 4949 * 1135 5191 7049 3103 5783 5840 6072 * 5225 5929 4237 5867 4188 * 6568 194
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+
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+
+I 196 * * * 7382 2437 * 6581 4013 * 4153 * * * * * * * 3317 7039 804 196
+ 9 7382 * 542 1676 2206 352 10184 1152 1481
+
+T 197 * * * 5015 4408 6013 4842 4098 3670 5425 5239 7043 * 4233 4249 3414 1487 4311 6653 4042 197
+ 0 * * 1585 585 1727 519 10190 1000 1346
+
+C 198 * 42 * * * * * 6641 * * * * * * * * * 5729 * * 198
+ 39 5222 * 0 * * 0 10191 1288 1197
+
+N 199 3897 6787 * 3133 6080 * 6761 4625 4106 4398 5450 4769 * 2972 3539 3483 3375 2604 6928 6926 199
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+H 202 6520 * 5658 6727 5988 6709 1484 * 5577 * 6577 1417 * 6744 6636 3712 5691 * * 4155 202
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+A 204 2395 * 4159 6491 5665 2214 5726 5082 5411 4134 5675 4050 5603 4752 6437 2978 4714 4600 * 5428 204
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+
+S 205 4694 * 5436 5290 * 2066 6729 5007 4683 2101 6516 3410 5759 3876 5477 3692 5079 5081 * 6552 205
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+
+S 206 4736 * 5246 2999 6499 6202 6269 * 4782 * 6563 * 2260 2824 4313 2692 2944 5102 * 6336 206
+ 71 4905 6105 399 2048 2813 222 9808 1290 1882
+
+T 207 2984 * 3721 4238 * 3425 5478 4878 5239 4685 * 4345 4827 3388 5082 3134 2978 4220 * 5272 207
+ 35 5381 * 639 1483 1533 611 9647 1470 1976
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+K 208 5473 * 4181 3352 * 4697 3817 6166 3204 5058 6397 4221 2745 3406 3707 4178 4280 3834 * * 208
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+ 44 6680 5630 2129 374 0 * 9513 1116 1006
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+K 212 * * 6126 3173 5931 * 3624 5219 4199 6237 5809 4075 4178 4567 4566 2566 2110 5171 * 4730 212
+ 0 * * * * 1831 476 9500 0 1332
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+I 213 5731 * * * 2869 * * 2133 6001 1668 4275 * 5828 5723 * 5001 5911 2915 * 5845 213
+ 0 * * 1000 1000 0 * 9278 1197 1197
+
+E 214 * * 3944 2844 * 5694 5620 5617 4574 2922 * 2563 5694 3806 4186 2738 3631 5953 * * 214
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+
+P 215 * 4825 5100 * * * * 3529 2749 4837 * 4023 2705 3919 4354 3604 4854 2432 4912 * 215
+ 22 6046 * 0 * * * 7762 1197 0
+
+R 216 3431 * 4686 * * 3653 * 2170 4651 4598 * * 4202 3558 2828 3000 3634 * * * 216
+ 0 * * * * 0 * 6963 0 1197
+
+G 217 2811 * 3593 2412 * 4287 * * 3311 * * 4474 4121 4393 * 2120 4197 * * * 217
+ 85 4136 * 4858 51 * * 6553 1119 0
+
+P 218 * 1516 * 3535 * * 4147 * * * * * 2063 5769 4225 * 3824 2990 * * 218
+ 104 3841 * 4087 87 * * 5876 1101 0
+
+T 219 3958 * * * * * * 4191 3664 * * * 1533 * 4000 3350 2542 3011 * * 219
+ 0 * * * * * * 5426 0 0
+
+I 220 * * 1964 * * * * 3350 3736 * * * 1947 * * 2553 5322 3112 * * 220
+ 0 * * * * * * 4897 0 0
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+K 221 3655 * * * * * 2705 5322 2475 * * 3639 1373 * * 3380 * * * * 221
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+
+P 222 * * * 3540 * * * * * * * * 323 * * 3128 * * * * 222
+ 518 1730 * 2501 280 0 * 4622 1354 1123
+
+C 223 * 1259 * * * * * * * * * * * * * 2984 1709 2739 * * 223
+ 0 * * * * * * 3788 0 0
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+P 224 2907 * * * * * 2739 * 3013 * * * 754 * * * * * * * 224
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+
+P 225 2907 2739 1906 * * * * * * * * * 1628 * * * 2984 * * * 225
+ 0 * * * * * * 3788 0 0
+
+C 226 * 493 * * * * * * * * * * 1789 * * * * * * * 226
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+K 227 * * * * * * * * 0 * * * * * * * * * * * 227
+ 0 * * 0 * * * 1652 0 0
+
+//
+�HHsearch 1.5
+NAME 2ff05444e7145a5dd540ec42015fcba1
+FAM
+FILE 2ff05444e7145a5dd540ec42015fcba1
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:29:31 2013
+LENG 177 match states, 177 columns in multiple alignment
+FILT 110 out of 1146 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
+CCEEEEEEECCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9499999788888806999999999999996498885899999889026986477767899999999975505898759999999999987554058889
+96299999179988885758887988999997884334248999999966999853997199999999999999649
+>Consensus
+xDvxfllDxSxSmxxxxxxxxxxxixxxxxxlxxxxxxvxvixfxxxxxxxxxlxxxxxxxxxxxxxxxlxxxxgxtxxxxalxxaxxxxxxxxxxxrxx
+xxxxiilxTdGxxxxxxxxxxxxxixvxxigxgxxxxxxxxxxxLxxiaxxxxxxxxfxxxxxxxLxxxxxxixxxi
+>2ff05444e7145a5dd540ec42015fcba1
+VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPD
+ATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI
+>gi|260837234|ref|XP_002613610.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]gi|229298996|gb|EEN69619.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]
+---LYPYGSySGGYPPSNMEKTMG-PGNYRVPLvaGGETITIGSIKKTEETSPseslsaekQAVVAAQDTRECTMSSITiySEERLRGTKKTYSGNGWLP
+RDPSW-----VVDSAGPAWVDSNGVTWEDV-------VTVDNVQSGDQ------RQVFGGFQGKARYWKLVITQTYTGWQPYVRE-----
+>gi|21675085|ref|NP_663150.1| hypothetical protein CT2279 [Chlorobium tepidum TLS]gi|21648325|gb|AAM73492.1| conserved hypothetical protein [Chlorobium tepidum TLS]
+IDIIFM-------ldisnsmLardtaPDRLTH-------aktellqISRRL--GDGRKALLLFAGTPVVQCPLTDDE--E-----dfeilLD-mA-apeL
+ITTqGTD------yrrafdA-aLKL-TNSGG-ELSSNETV------lvlasdGE--dhg-NDLGDIatamkTRG------vhlhviGVG--gvqpvpipm
+qggpkrdqqgkiVLTSFKPEPLASLIKTAKG-KFYYSRPDAp-vHDAVADDI----
+>gi|317505805|ref|ZP_07963650.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]gi|316255887|gb|EFV15112.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]
+--VILLLDISESMRatdvkPSRVEAARAAAIKFVDGM-APTVQLGVVTFAGNAQPLVRPSTD--HETAKKVIDQMIrpdKLEKQTATGEGIYTALQQIEt
+iAGalGGKNHA-PPARIVLVSDGKETVpdDLNAprgaYaaartaKEKHVPVCTVAFGTKAGkitldnqvdeVPVDLESLKKISDLSNSPgnscRFFPAES
+QGELAQIYQSLNEDI
+>gi|341895816|gb|EGT51751.1| hypothetical protein CAEBREN_12317 [Caenorhabditis brenneri]
+LDIVLVIDNTKIMQMDGVYQTIQLMFGASVRIGtdyqdPRSTRVAIVTYNEKATVVADFNKFKSLKQLNDELEMLNGTEKsdsfSAYMDLGLQSA-YDLI
+QDVNNANDrrRYKKLIILFTSNYAYKNKRPdvlAltiRQSGVDIATVYTGTGTT---RNTQFQlTfVGNYN---MNFHMADATpIVKELQGAT----
+>gi|227541544|ref|ZP_03971593.1| von Willebrand factor, type A [Corynebacterium glucuronolyticum ATCC 51866]gi|227182700|gb|EEI63672.1| von Willebrand factor, type A [Corynebacterium glucuronolyticum ATCC 51866]
+AHEMFi-aVDTSSSMEGQPLERTKEILAELSKGMfEssygeyafRPGDKISffg---LTPQS----sgpSYVAYDP--EDPDSYRELEDfangLntGPKI
+STCETLIRGLLGA-----D-GMGNAVPAVIFTTGTDEDDPECEnfesnvdslpEeSGPHPAYIFLLDPA-----HTEWMDTLAEITG-GQVFDATT----
+-----------
+>gi|332308254|ref|YP_004436105.1| LPXTG-motif cell wall anchor domain protein [Glaciecola agarilytica 4H-3-7+YE-5]gi|332175583|gb|AEE24837.1| LPXTG-motif cell wall anchor domain protein [Glaciecola sp. 4H-3-7+YE-5]
+-EVVFLLDTSGSMAGESIVQAKRAVDFALTQLHPED-SVNVIEFNDAPQALWNLAMPATANNIQRARNWVASLSanGGTEMAPALSMALHKtNLEQqniN
+EGSPVQLRQV-VFITDGSVSNEDALMSLienqlADSRLFTIGIGSAP----NSYFMTQAAQAGRGTFTY-IGDINQVQQKMTELFNKL
+>gi|297283897|ref|XP_001104925.2| PREDICTED: integrin alpha-D-like [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+--------------LAASTNRS-----WLLACGP------TLHRVCGENSYSKGSCLLLGSHWEIIQTVPDALPEcphqemdIV
+>gi|311103581|ref|YP_003976434.1| von Willebrand factor type A domain-containing protein 1 [Achromobacter xylosoxidans A8]gi|310758270|gb|ADP13719.1| von Willebrand factor type A domain protein 1 [Achromobacter xylosoxidans A8]
+--T---------lvlldlsasA---ndlAsdagttvLDLEKQAAMLLAQATSGEGDRIAVHGFCSDTRAAVyyyRLLEPGAPVA-TALG-RIGAAQARys
+TRLGAALRHAGGLA-----LLVPGERRAIIVVTDGEPSDVDahdprylvddareavLEL----rgrgVSVHCVALDAK-----AEPQLRAMFGF---RGY
+RIVTNPA-aLPQALVRV----
+>gi|156404021|ref|XP_001640206.1| predicted protein [Nematostella vectensis]gi|156227339|gb|EDO48143.1| predicted protein [Nematostella vectensis]
+IDIVFVLSASSMKSSTTFSLMQNCILKIGSKFGVYTFHYSVILYGSSSVKKFDFNtAFPYREALIEESNNLVKENGSSAITEALSFARTVLNDASA--RS
+NVRRGVAVIFDKATGKTVqqlqsaaRPLHDEGIIVVASGVGPE----VTKEEARAMTSRR--NDATHVNDTYQPGPLGDHIVRRI
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 2347 * * * 4932 * * 2822 * 2186 4105 * 6052 * 4239 6086 6298 2250 * 4450 1
+ 0 * * * * * * 8772 0 0
+
+D 2 * * 574 3158 * 6353 4339 * * * * 3471 * 5034 6360 6553 6483 * * * 2
+ 18 * 6353 * * * * 9165 0 0
+
+L 3 5916 6868 * 6350 6664 * 6504 1881 * 2003 4874 * * * * * 4778 1551 * 6808 3
+ 0 * * * * 0 * 9474 0 1036
+
+V 4 3221 4386 * * 5335 4825 * 3085 * 2914 4457 6511 * * * 5732 3775 1790 5681 3693 4
+ 0 * * * * * * 9593 0 0
+
+F 5 6433 6642 * * 906 * * 2911 * 2259 5869 * * * * * * 3876 * 5814 5
+ 17 6423 * 0 * * * 9593 1051 0
+
+L 6 3549 6284 * * * 6469 * 2909 * 1161 * 6505 5784 * * 6399 6543 1953 * * 6
+ 9 * 7381 0 * 0 * 9554 1051 1051
+
+F 7 5886 * * * 5055 * * 2417 * 1288 4866 6407 6604 * * * * 1875 * 5197 7
+ 0 * * * * * 0 9590 0 1020
+
+D 8 * * 264 4412 * 5273 5201 * 6542 * * 6654 5425 6641 * 6252 * * * * 8
+ 0 * * * * * 0 9590 0 1020
+
+G 9 3270 5705 5492 4740 6685 3489 5668 4053 5799 4509 6825 4313 * 4651 3997 3113 2747 2900 * 5886 9
+ 41 5811 6654 0 * * 0 9590 1182 1020
+
+S 10 6537 6671 6503 * * * 6374 * * * * 6542 * * * 253 3234 * * * 10
+ 0 * * * * 1088 917 9578 0 1204
+
+M 11 3667 * 3394 3995 * 1624 5577 6544 5085 6390 7003 4619 6641 4795 5032 2597 4483 6554 6689 6563 11
+ 29 * 5628 * * * 0 9590 0 1020
+
+S 12 4878 * 4568 * 6619 3864 6687 * 4473 * 5502 5164 * 6656 5766 612 5542 5700 * 5866 12
+ 16 * 6535 * * 1784 495 9561 0 1398
+
+L 13 4408 * 6388 * 7033 * * 2824 6282 3323 1266 6612 * 5816 * 5819 5015 2565 * 5788 13
+ 64 4808 7013 3144 173 1574 591 9567 1686 1423
+
+Q 14 3169 6831 5058 4561 * 2432 * 6773 4402 5083 * 3633 4740 4324 3725 2442 3332 6722 * * 14
+ 252 4045 3324 2017 409 * 0 9575 2093 1410
+
+P 15 3959 * 3623 2635 6550 2438 5408 6932 3904 5768 6515 3606 3267 5692 5504 3161 5687 6392 * * 15
+ 120 4895 4442 1872 460 595 1565 9439 1339 3056
+
+D 16 3404 * 2930 2486 * 5371 5504 5619 3150 5002 6490 4189 5797 4591 4571 2915 4195 5535 * 6768 16
+ 96 4376 5972 2590 262 972 1029 9408 1790 2343
+
+E 17 3720 * 2723 3521 * 3654 * 6952 3153 6375 5492 2978 5522 5625 3436 3987 4005 5596 6494 4926 17
+ 41 5153 * 1609 573 672 1425 9439 1331 1916
+
+F 18 5614 * * * 1631 6520 * 3251 * 2683 4684 * 5726 6745 5274 5121 * 4049 2788 4104 18
+ 13 6793 * 0 * 1009 991 9567 1000 1237
+
+Q 19 3270 * 2819 2661 * 4504 4855 5765 3965 5234 6844 4422 7091 3487 4266 3020 5293 4798 * 5619 19
+ 93 4006 * 2874 212 * 0 9589 2020 1027
+
+K 20 3087 * 3145 4131 6840 4648 5229 4362 3158 2776 5813 5562 * 3677 3773 4122 4521 5098 * 6677 20
+ 33 5917 7420 2749 232 0 * 9589 1396 1027
+
+I 21 2273 * * 5036 4594 * 6640 3866 6303 2821 3651 * * 4713 * 4024 3120 2364 * * 21
+ 16 * 6544 * * * 0 9606 0 1020
+
+L 22 6438 * 6670 5820 * * * 4509 1586 3624 5206 4467 * 3580 2338 4558 5674 4357 6441 5224 22
+ 14 * 6659 * * 1024 977 9478 0 1220
+
+D 23 2903 * 3324 3547 6865 3803 5267 * 2826 6897 6735 4278 5954 3222 3118 4203 4707 4911 * * 23
+ 26 * 5811 * * * 0 9591 0 1217
+
+F 24 2177 5612 5117 6750 1579 5650 * 4596 6506 4113 5490 5571 * * 6288 3782 4410 4361 5012 * 24
+ 0 * * * * 449 1903 9505 0 1574
+
+M 25 2897 6912 * * 3626 6966 * 2155 * 2376 3934 * 5820 * * * 4571 2202 * 6855 25
+ 0 * * * * * 0 9606 0 1020
+
+K 26 3634 6841 4505 2812 5675 4426 5263 4693 3765 3792 5826 4101 * 3624 3658 3697 4657 3655 * 6026 26
+ 0 * * * * * 0 9606 0 1020
+
+D 27 3480 * 2792 2839 4862 3943 6914 * 4243 4531 5597 3577 6564 4827 4184 2976 3989 5208 * * 27
+ 0 * * 2807 222 0 * 9606 1020 1020
+
+V 28 3445 * * * 2877 * * 2488 6332 1978 3708 * * * * 6905 4175 2712 * 4848 28
+ 0 * * * * * * 9609 0 0
+
+M 29 3381 * * * 5498 5369 6422 2454 * 2153 3701 6483 * * 4793 4506 4733 2226 * 5707 29
+ 44 6447 5742 1585 585 * * 9609 1039 0
+
+K 30 6829 * 3529 3172 * 4670 5269 6741 3288 4322 6833 4080 4504 3283 3514 2925 3556 5106 6884 6625 30
+ 17 6443 * 1585 585 1068 935 9472 1008 1232
+
+K 31 3729 5702 4527 3834 6425 3766 4517 4805 3584 4258 6806 4367 4756 3526 3351 2849 4509 6652 * 5662 31
+ 80 4451 6914 1735 515 * 0 9605 1746 1033
+
+C 32 6522 4724 * * 1896 * * 2933 * 1438 4183 5970 * 5530 * 6897 * 4031 * 5623 32
+ 556 1884 4358 1366 708 1037 964 9612 5002 1241
+
+S 33 5152 * 2855 4350 6879 2112 5571 5895 6681 6958 6567 3704 4996 4196 4491 2338 5148 5206 6863 6677 33
+ 430 2121 5163 1841 472 765 1281 9488 4400 2094
+
+N 34 4857 * 2971 2951 6451 3992 6448 5711 3987 5606 * 3961 1963 4454 4546 4064 * 4984 * 5663 34
+ 275 2608 6711 1044 957 0 * 9540 3681 1849
+
+T 35 3980 * 2329 2945 * 4515 5704 6784 3913 5681 5068 3824 3704 5177 5473 3281 3784 4858 * 6314 35
+ 12 * 6927 * * 0 * 9610 0 1000
+
+S 36 3917 6736 3377 4044 6576 2730 4534 * 3070 4139 5717 3554 6787 4847 5624 3014 4101 6580 7181 5656 36
+ 65 6661 4870 1000 1000 0 * 9622 1016 1005
+
+Y 37 3324 * 3411 5617 4544 5083 * 2677 * 3525 6726 6769 6706 4401 6513 4134 2936 2629 6600 5378 37
+ 52 6805 5256 1000 1000 0 * 9597 1000 1619
+
+Q 38 4855 * 4813 4831 6801 * 3903 * 3276 5236 6957 4489 6871 2903 1532 4241 4629 5556 * 4877 38
+ 0 * * * * 0 * 9614 0 1337
+
+F 39 4889 * * * 2293 * * 2276 * 3138 4941 * * * 7486 6400 5715 1662 * 4128 39
+ 13 * 6819 * * * * 9518 0 0
+
+A 40 1961 5115 5475 5621 6945 1811 * * * 6419 6720 3945 * * 6002 2255 4373 * * 5720 40
+ 17 6447 * 1585 585 * 0 9617 1051 1000
+
+A 41 4379 * * * 3847 * * 2111 * 1946 4369 * * * * 5059 * 1675 * * 41
+ 24 5923 * 3585 126 1184 837 9579 1158 1236
+
+V 42 3826 * * * 4388 5626 * 1868 * 2797 4730 5569 * 6682 6480 5296 4992 1908 5566 5675 42
+ 0 * * * * * 0 9583 0 1051
+
+Q 43 3952 * 5884 4134 5277 3558 5959 4752 4464 3543 4713 4444 * 2974 5145 3077 2602 5264 6645 7023 43
+ 0 * * * * 0 * 9583 0 1051
+
+F 44 * * * * 1094 * 5098 6782 5807 5642 * * * * * 5131 * 4994 * 1338 44
+ 0 * * * * * * 9518 0 0
+
+S 45 3187 5848 4768 * * 2302 5513 * 6627 6768 * 2783 6086 * 4813 1609 4129 * * 6415 45
+ 11 7042 * 3170 170 * * 9518 1006 0
+
+T 46 4528 6854 2730 3469 6400 3627 4810 * 4858 * 5557 3289 4989 5019 4362 2796 2942 5747 6931 6858 46
+ 46 5003 * 2411 300 * * 9518 1388 0
+
+S 47 4376 6400 3749 2810 6009 3548 5847 4649 3614 6689 * 3682 5578 3746 3811 3325 3446 6750 6768 5736 47
+ 129 3546 * 2075 391 * * 9518 2427 0
+
+Y 48 2005 * 6907 * 4760 4378 6653 5349 5874 6497 * 5312 3156 * 6858 3227 3412 2342 * 4294 48
+ 47 5620 6416 563 1630 * * 9518 1196 0
+
+K 49 4378 6537 4174 3474 6525 5669 3603 5266 3137 4883 6900 4596 4732 3635 3008 3541 3868 4406 * 5999 49
+ 0 * * * * * 0 9583 0 1051
+
+T 50 3913 * 5230 3636 5643 5159 6887 4064 4286 3841 4888 5499 3384 5106 4492 5257 2951 2695 4206 * 50
+ 174 3393 5765 1748 510 * 0 9583 2600 1051
+
+E 51 5458 6063 3965 3176 5313 4517 5175 3432 5055 3208 6627 5922 5560 3940 5115 4889 4652 2276 * 4706 51
+ 57 5193 6463 2135 373 * 0 9453 1396 1397
+
+F 52 3401 7419 6635 * 2277 4980 5716 2804 5968 3001 4485 * 6893 4731 * 4337 5300 3112 5682 4392 52
+ 51 5851 5833 1306 748 827 1197 9428 1373 1604
+
+D 53 3723 7003 3077 4584 6583 3597 5119 6871 3977 5291 6845 4138 2630 4446 4797 3171 4271 4551 * 5475 53
+ 32 6412 6613 3700 115 1838 474 9481 1052 1491
+
+F 54 5729 5889 7099 5069 2472 6598 * 3956 6502 1376 5746 * 4324 4759 6534 5723 5526 3842 * 4344 54
+ 28 5709 * 1904 448 * 0 9586 1168 1460
+
+S 55 3522 * 3799 5772 * 4747 5210 6507 4178 5421 6534 2875 5688 4258 3184 3146 2696 5011 6863 4909 55
+ 121 3843 6502 1192 830 925 1079 9586 2082 1460
+
+D 56 3825 * 2823 3478 6444 3576 5681 * 4397 4616 6832 3434 4436 3811 4158 3647 3399 5699 5937 6606 56
+ 38 5979 6617 1309 746 * 0 9482 1162 1337
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+
+//
+�HHsearch 1.5
+NAME 3067be314a806ff137315081e104742e
+FAM
+FILE 3067be314a806ff137315081e104742e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:26:38 2013
+LENG 171 match states, 171 columns in multiple alignment
+FILT 188 out of 1401 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
+CCEEEEEEEEEEECCCEECCCEEEEEEEEEEEEEECCCCEEEEEEEEEECCEEEEEEEEEEEEEECCCCCC
+>ss_conf PSIPRED confidence values
+9866789999998655877579960008999879999999993799820156999999937987400367899983778999999999999998633578
+86158555589981660079989999999999985479889999999999999999986099993688889
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxLPxxpxlxvDxvxxxxxxxGxxxxgxixxxxxvxxdxxxfxgHFpxxpvxPGvlxiExxaQxxxxxxxxxxxx
+xxxxlxgixxxkFxxpVxPGdxxLxxxvxvxxxxxxxxgxxxxxxxxxxxgxxvxxxxxxxvxxxxxxxxx
+>3067be314a806ff137315081e104742e
+VDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGE
+GKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAF
+>gi|149174078|ref|ZP_01852706.1| probable hydroxymyristoyl-(acyl carrier protein) dehydratase [Planctomyces maris DSM 8797]gi|148847058|gb|EDL61393.1| probable hydroxymyristoyl-(acyl carrier protein) dehydratase [Planctomyces maris DSM 8797]
+-------------------------------RFSLVDQILEMEKG--K----SITAVKNLSLSEEYLQDHFPGFAVMPGVLMVESIVQAGAWLMRYTNDf
+QYSTILLkQTKAIRFNSFVTPGKQ-LRVSLSIQKWE---DNLCTLKASSQVEGEAAVSGR-------------
+>gi|269967927|ref|ZP_06181967.1| putative beta-hydroxydecanoyl-ACP dehydrase [Vibrio alginolyticus 40B]gi|269827450|gb|EEZ81744.1| putative beta-hydroxydecanoyl-ACP dehydrase [Vibrio alginolyticus 40B]
+------------------------EQLLPhDKPMILVDRALDVQQD-------TIHCQVDIAEHNPFFD---STSQTVPAYVGIEFMAQSVAAWSGYHAl
+mkEQapPIGFLLGSRRYTSECDTFSRGQ--VLDVYAEKVMED-NGMAVFSARIELQGTVVATCQ-------------
+>gi|325300363|ref|YP_004260280.1| hypothetical protein Bacsa_3281 [Bacteroides salanitronis DSM 18170]gi|324319916|gb|ADY37807.1| hypothetical protein Bacsa_3281 [Bacteroides salanitronis DSM 18170]
+----------------------------------------------------TPSFHVELLPGCDVYRGHFPGHPVCPGVCNIGM----LKECMEEAVG-
+VKLAIETIKQCRMTAVASPEICsELDIRMHIQSL--GEA-RWAVQAKLYDAERTYMEYK-------------
+>gi|300726872|ref|ZP_07060300.1| conserved hypothetical protein [Prevotella bryantii B14]gi|299775819|gb|EFI72401.1| conserved hypothetical protein [Prevotella bryantii B14]
+-------------------------ELLLqQEPFVFIDQLTYYDER-------LTTSVFRVSPNHLYV-----EEGKLQTCALAEVIAQTCAARIGYINk
+yilKrTIqMGFIGAIRNLKVYATPLVGDL-LETQVEIKEE---IMGMLLVEAQIKRGEDLIAEGT-LKMSLT------
+>gi|94265785|ref|ZP_01289519.1| conserved hypothetical protein [delta proteobacterium MLMS-1]gi|93453677|gb|EAT04061.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
+-----------------------------------------------------LVGNYSFALDFPGFIGHFPELPILPAVVQLAAVRYLAELAVAS----
+-NLQTVGCQGAKFRGMVRPRE-LLSVSLTL--VQRAEPPGCQAKFKLTRADVLVAGG--------------
+>gi|312114350|ref|YP_004011946.1| MaoC domain-containing protein dehydratase [Rhodomicrobium vannielii ATCC 17100]gi|311219479|gb|ADP70847.1| MaoC domain protein dehydratase [Rhodomicrobium vannielii ATCC 17100]
+-----------------------------------------------------------VHLDEAFAATTPFKQRIAHGMLSAAYI---SAVFGTKLPGP
+GCIYI--SQTLNFKGPVHIGDE-VVTTVRVTDLITEKR-RAIFHCECKVGGKTVVVGEA------------
+>gi|52840605|ref|YP_094404.1| 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]gi|52627716|gb|AAU26457.1| 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
+-------------------------------RFLFVDRIVQLSP--GEWIKG----IKHVTRDDAYLTTDDHGRLCFMPSLIGETLGQLAAWNVMQHN-H
+FTARpVAGVvSSARLYRPAYVGET-ILLESNIDSLDE---KAVQYHSIAKVGNDIIFTIDG------------
+>gi|301062223|ref|ZP_07202900.1| FabA-like domain protein [delta proteobacterium NaphS2]gi|300443655|gb|EFK07743.1| FabA-like domain protein [delta proteobacterium NaphS2]
+--------------------------LIPHrGLMRLVDEIISVDEK-------TAVTASTVTESWPMVEGGA-----ANCIVLVELIAQTAGICLGWKEP
+RkkeeelaGTGWIVGVKEAVFHHSEIPLNSRII-TA-SDRVFQV-EFYSEIAGTARVGDETLAEV---KLQMVQSDS--
+>gi|334140009|ref|YP_004533209.1| MaoC-like dehydratase [Novosphingobium sp. PP1Y]gi|333938033|emb|CCA91391.1| MaoC-like dehydratase [Novosphingobium sp. PP1Y]
+--------------------------------------------------------------DAELAKKSEFGRILVNSTFTF-SLA--IGLSVADT-TV
+GTlVANLGFDKVVTPKPTFIGDT-LTCTSEVIELREsksRPgQGIVVFRHELTNqKGEVVLSCQR------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+
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+
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+
+Y 7 * * * * 704 * * * * 2935 * * * * * * * * * 1969 7
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+
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+
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+V 54 2153 6790 * 6554 6785 5445 6517 1826 4469 2393 6634 * 6249 * 5704 * 5363 3271 * 5346 54
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+I 60 4993 * * 7167 3405 7212 6913 1996 * 2563 7133 * 5365 * * 7360 6166 1442 6284 * 60
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+I 72 5323 6896 4244 * 3508 7200 4549 5234 3786 4283 6771 6313 1022 5604 * 4897 5900 6059 6817 5861 72
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+
+K 122 4471 5608 3765 3432 * 5273 5652 * 3481 7248 * 5603 6110 3305 3613 4296 1920 3562 * 6866 122
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+Y 126 3805 5116 * * 3955 5852 6752 2579 * 1996 4883 * * * * 5104 4799 2338 * 3415 126
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+I 139 3974 * 3549 5922 5782 1379 * 6271 4795 4722 7210 3204 3544 6626 4145 4777 5947 5827 * 7156 139
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+M 140 4141 7559 5438 5556 3189 5910 5866 2677 7726 3192 3503 4977 6918 5101 3868 6036 3825 3149 6461 4510 140
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+
+T 156 * * 4924 2177 6505 7226 4158 * 3173 4833 7293 5508 6693 4125 3760 2742 2446 5797 * 7364 156
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+
+A 157 2009 4886 6944 6989 5222 1850 * 4864 * 3335 5295 * * 5712 * 4507 5384 3217 * 4504 157
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+L 164 * * * 4444 3574 * * 2028 4744 1581 3644 * * * * * 4517 2946 * * 164
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+Q 166 * * 2848 2908 * * * * * * * * 1508 1410 * * * * * * 166
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+D 167 * * 2397 2274 * 2308 * * 2359 * * * * * * 2276 * * * * 167
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+T 168 * * 1682 * * * * * * * * * * * * * 539 * * * 168
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+
+S 169 * * * * * * * * * * * * * * * 0 * * * * 169
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+
+A 170 0 * * * * * * * * * * * * * * * * * * * 170
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+F 171 * * * * 0 * * * * * * * * * * * * * * * 171
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 3155c91c2cbf7967cb4ba20d80ff989c
+FAM
+FILE 3155c91c2cbf7967cb4ba20d80ff989c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:34:41 2013
+LENG 142 match states, 142 columns in multiple alignment
+FILT 169 out of 1174 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
+CCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCC
+>ss_conf PSIPRED confidence values
+9689999999999999999299940599999999868579999999399999999998988873044567777767777699999999999999998599
+854799999999826430899999996999999999987359
+>Consensus
+xxtxxxxxxlxxAxxxAxxxxxxxixxeHlLxallxxxxxxxxlxxxgxxxxxlxxxlxxxlxxxxxxxxxxxxxxxxxxsxxxxxxlxxAxxxaxxxxx
+xxixxxhLllalxxxxxxxxxxxLxxxgixxxxxxxxixxxx
+>3155c91c2cbf7967cb4ba20d80ff989c
+MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGR
+NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGT
+>gi|58270056|ref|XP_572184.1| chaperone [Cryptococcus neoformans var. neoformans JEC21]gi|57228420|gb|AAW44877.1| chaperone, putative [Cryptococcus neoformans var. neoformans JEC21]
+-------------------------------------------------------------------------------------------------MLA
+RKHLIRTARLSI-PRPSV--ATRAVALGFVRTYAQGPP----
+>gi|257440207|ref|ZP_05615962.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium prausnitzii A2-165]gi|257197241|gb|EEU95525.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium prausnitzii A2-165]
+-PAIIFVQRMENGQMKNEGYCLHCAREMHI--------kPVDDLMKQFGMSDEDM-DAMEDRMENmM-QEM---------gdmSNMNPFSMMMGMGQPDQ
+SEEDGDLVPGSSATFPL-gVNGGA-------QNGKNEKK---------
+>gi|303273680|ref|XP_003056193.1| predicted protein [Micromonas pusilla CCMP1545]gi|226462277|gb|EEH59569.1| predicted protein [Micromonas pusilla CCMP1545]
+----------------------------------MTSDverVRVALMMSAGVTTAAVLVLSSKTVRGA----IaG-TL-KSVA-STiQPTELIEAFDKSD
+TPV----INTKMTNISSVqS--QAS-EP--LNTGIPHDIAPKNM----
+>gi|302664673|ref|XP_003023964.1| hypothetical protein TRV_01906 [Trichophyton verrucosum HKI 0517]gi|291187987|gb|EFE43346.1| hypothetical protein TRV_01906 [Trichophyton verrucosum HKI 0517]
+---KEEEKDFFPSERSGDRGGRLPWATRRELGGELHGWdRTAAFWS-------L---REGPSTRGR-PSQ-------RL-dI--iyiyikgkawyvglqq
+vkahtmscrlvmRGSRQLLQAPRAAAHInttarRGLYgllprqlskqyVPASGFVRHY-A--NGR-PH--PPGGTHRMN---------
+>gi|50294636|ref|XP_449729.1| hypothetical protein [Candida glabrata CBS 138]gi|49529043|emb|CAG62705.1| unnamed protein product [Candida glabrata]
+-------------------------------------------------------------------------------M---LS-RVCRSSLRNSVARV
+-SRYAGPRALALSMV---VSGRQVSG------S---------
+>gi|55376027|gb|AAV50022.1| heat shock protein 104 [Pleurotus ostreatus]
+-FTDKTRRTITAAVQLAKDYANAQVHPVHIASALLNDTgedeqsgglgdtssssrsqsLFHSAISKAGGDPAVVKRGIQRAVVRL-PTQD-P-PPEEVYF
+SGPALKVVREAQSLQKTMHDSYIAQDHLLLAVLKDA--TIQAIIKEAGLTEATLKTAI----
+>gi|342839815|ref|ZP_08713678.1| ATP-dependent Clp protease ATP-binding subunit clpE [Streptococcus criceti HS-6]
+-------------------------------------------------------------MLCQnCKLN----DASIHLYANVNGQ-------------
+QKQIDLCQNCYRIMKaDPENILNSNLTSqnpQNQSMDSFFD------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 1274 3246 1056 0 * * * 4341 1031 0
+
+L 2 * 6439 6326 * 1487 * * 5144 * 1725 4082 * 5576 * * 6373 5560 4545 5557 3171 2
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+
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+
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+
+E 5 3364 6284 3429 2553 6055 5665 5123 4326 3120 5904 6057 4069 * 4409 3640 3699 4122 5430 * 5485 5
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+
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+
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+
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+
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+
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+
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+
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+
+M 25 4852 7294 * * 7220 * * 1476 * 2192 5302 * 7125 * * * 5509 1752 6167 6853 25
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+
+T 26 3946 * 2588 2883 * 3065 6580 * 5708 5520 5690 7028 * 4984 4449 3165 2160 6234 * 6747 26
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+V 27 4652 6962 6503 4516 6914 5841 * 3693 * 4483 * 6209 1813 6181 6837 3154 2122 3523 * * 27
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+H 29 6470 7419 4304 * 5101 * 376 7813 * 5792 5296 6073 * 7036 4866 7006 * 6347 * 7000 29
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+
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+L 32 3750 6664 7411 5140 4248 5082 4999 4067 4175 1520 5106 5995 6482 5017 6043 4011 * 5149 4081 4231 32
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+
+L 34 4578 7414 * 6146 4474 * * 2625 * 1005 2971 * * 6147 * * 5817 3995 * 6545 34
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+
+N 37 4434 * 2262 2935 7173 4377 6107 6845 5102 4170 5065 3651 5690 2908 5152 3842 4237 5306 * 6238 37
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+
+P 38 5657 7033 2209 3075 * 3915 7555 5978 3469 * * 3903 2565 4422 4269 3279 7292 * 5957 * 38
+ 1910 460 7160 810 1218 1072 932 9430 8145 1828
+
+S 39 4429 7316 3327 3532 4888 4970 6193 3631 4662 3212 7071 5637 3371 4911 3585 4088 4111 3616 * 6082 39
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+
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+
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+ 21 6848 7445 0 * * 0 9510 1020 1385
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+E 42 3376 7475 3330 3358 7390 4827 6231 5646 2883 5190 * 3996 5767 3578 2451 4137 5557 5583 * 5873 42
+ 41 5843 6586 0 * 2511 278 9510 1213 1491
+
+A 43 3147 6118 * 6700 3688 6043 * 1820 * 1958 5657 * * 7046 7272 7134 4213 3287 5821 6087 43
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+L 44 5213 5273 * * 3021 * * 3439 * 843 3863 * * * * 7111 * 4180 5469 5600 44
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+
+E 45 3990 * 5632 2629 7277 4547 5442 5184 2786 5449 5845 4256 6589 3292 2975 3487 4256 4768 * * 45
+ 50 6935 5262 1000 1000 2294 329 9649 1015 1627
+
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+ 62 6989 4879 1000 1000 * 0 9500 1002 1972
+
+C 47 2767 3282 * 6890 3299 * 4307 4477 5498 2164 5201 4263 * 4267 5902 4393 5373 4947 5851 5054 47
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+
+S 48 6780 * 3943 4633 5783 936 4850 * 4871 6038 * 3053 5434 * 5224 4006 7089 7577 * 6025 48
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+
+V 49 3506 5658 5853 7000 6056 3445 * 1914 6724 3046 5627 6885 4838 * * 5512 4402 2244 7111 6243 49
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+D 50 5257 * 1477 5566 * 5902 7275 7194 5276 7045 * 2435 5525 5247 5346 2964 3115 6152 * 6054 50
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+V 52 3144 * 2373 2734 6019 3686 * 6306 3617 5682 * 3925 4592 4257 4609 4402 4630 4801 * 6305 52
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+A 53 2432 * 3906 2849 * 4427 * 4922 3028 4521 6443 4516 5912 3967 3769 4020 4950 5042 7311 5393 53
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+L 54 3702 7258 7190 6902 3558 * 7410 2943 * 1320 4017 * * 7031 * 6184 6291 2651 * 5337 54
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+I 62 5512 * 5700 5311 3892 * 6150 2619 5176 1422 3922 * * 7086 5360 5171 4711 3409 6891 5482 62
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+
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+P 67 3414 * 3965 3653 * 3862 7654 5415 5281 * * 5516 1339 4207 4636 3667 6147 5111 * 7267 67
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+
+T 78 4902 * 6019 5832 4954 6165 6067 2801 * 2305 6003 * 2356 4687 4937 4233 4579 3008 * 5326 78
+ 142 4607 4253 2741 234 70 4396 9529 1734 2949
+
+Q 79 4158 * 4082 3886 4864 3742 6208 4510 4487 4147 7211 5700 3086 4288 3486 3561 4529 4298 6658 3703 79
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+P 80 4335 * 7261 7163 2315 * * 3257 6005 1826 3770 5462 3804 5353 * 6034 6207 4264 6082 4440 80
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+ 0 * * * * 3768 110 9631 0 2272
+
+L 82 3880 * 3626 3535 7001 3982 5233 6873 4861 5680 * 3810 2461 3284 3759 3791 4176 5757 * 5095 82
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+
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+H 94 4903 * 5553 2622 5754 5571 5213 2842 5103 3031 5202 5056 7449 5774 4495 4142 4206 4389 6214 2967 94
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+G 99 5373 * 3549 5019 7241 1460 4750 7177 3546 5056 * 3581 5557 4123 4105 3550 6285 6486 * * 99
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+E 102 4007 * 6851 3538 3265 * 5471 4948 4401 3442 5660 5687 5526 3944 4493 4182 4719 3495 7297 2424 102
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+
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+F 113 3348 5859 7113 * 2966 * 7091 3949 * 1572 3435 * 6802 7051 * 5431 5009 3180 4436 5552 113
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+ 156 7267 3383 0 * * 0 10507 1000 2569
+
+Q 116 4877 * 3184 3054 * 3443 5641 5711 3145 * 6721 3988 2768 4497 4539 3285 4065 5473 * * 116
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+
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+
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+D 133 3388 * 2932 3470 5095 4837 6965 4742 3012 5933 6051 3635 5504 3473 4589 3582 5132 4163 * 5945 133
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+
+V 134 3596 * * * 3183 * 6283 2179 6493 1720 6706 * 6598 * 6331 5299 5142 2631 * 6470 134
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+V 135 5870 * 4835 3128 4659 6343 * 3972 4476 2281 5775 4557 5955 4364 2909 3890 4486 3883 * 5124 135
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+
+N 136 3340 * 5427 2125 * 4245 5443 * 2830 4828 * 4221 * 3188 4102 2883 4642 * * * 136
+ 0 * * * * * 0 9678 0 1528
+
+F 137 1900 * 4070 4113 5831 * 6251 4160 4405 2391 * 4258 5659 3029 5407 6757 6771 4220 * * 137
+ 191 3014 * 1453 656 0 * 9122 2107 1528
+
+I 138 5199 6427 * 5264 4720 6057 6875 1764 * 2206 3647 6990 4245 6347 5505 4991 * 3075 * 4734 138
+ 0 * * * * * * 9827 0 0
+
+S 139 3425 * * 3341 5965 * * 3785 3053 3666 * 3212 4881 4930 5255 2899 3524 3343 * * 139
+ 217 2840 * 2681 245 * * 7179 1652 0
+
+H 140 * * * 4254 4645 * 1867 4519 4240 4277 * 3167 4125 3127 4163 3784 4803 4717 * * 140
+ 0 * * * * * * 6676 0 0
+
+G 141 3207 * * 3981 * 1990 4562 2731 * * * * 4075 4192 2649 3987 4403 * * * 141
+ 1740 513 * 2759 231 * * 6174 1762 0
+
+T 142 * * * * * * * * * * * * * * 1042 * 960 * * * 142
+ 0 * * 0 * * * 1717 0 0
+
+//
+�HHsearch 1.5
+NAME 3472662a6001a05156368eef829706af
+FAM
+FILE 3472662a6001a05156368eef829706af
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:26:29 2013
+LENG 237 match states, 237 columns in multiple alignment
+FILT 133 out of 1363 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEECCCCEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEECCCCCCCEEEEECCCCEEEEEECCCCHHHCCEEEEEEECCCCCE
+ECCCEEEEEEEEECCEEEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCEEEEEEECCEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEE
+EEEEECCCCCCCEEEEECCCCCCEEEECHHHCCCCCC
+>ss_conf PSIPRED confidence values
+9879935972899789989999997189977999994799984899996378722256667747997267716899991357533956999998588630
+1351488999861100001248972674367621308899999178899829999999999768713500489738994999999999145520499479
+9999807888555998647898424888135142679
+>Consensus
+xxxvxxxpxxxxvxxGxxvxLxCxxxxxxxxixWxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxLxIxxvxxxDxgxYxCxvxxxxxxx
+xxxxxxlxvxxxxxxxxxpxxxxxxxxxxxxxxgxxxxlxCxxxxxxpxxxxxxWxxxxxxxxxxxxxxxxxxxxxxgxxxxxsxLxixxxxxxxxxxxy
+xCxvxxxxxxxxxxxxxxxxxpxxxxxxxxxxxxxxx
+>3472662a6001a05156368eef829706af
+EAAVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGGGGTLY
+FGAGTRLSVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHF
+RCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC
+>gi|34364807|emb|CAE45841.1| hypothetical protein [Homo sapiens]
+----------------------------------------------------------------------------------------------------
+----------------E----------------------------LKtPLGDTTHtCPRCPEPKPCDTPPP-CPRCPEPKSCDTPPPCP-----------
+---RCPEP-KSC---------------------------
+>gi|332245853|ref|XP_003272066.1| PREDICTED: patr class I histocompatibility antigen, CH28 alpha chain-like isoform 2 [Nomascus leucogenys]
+----------------------------------------------------------------------------------------------------
+-----------------------------------htlqgmngcdmgpdgrllrgyhqhaydgrdyislne--DLRSWTAADTVAQI-------------
+---tqrfyeaeeyaeef-----RTYLEGECLELLRRYLENGK-------------------et--LQ--raEPs-SQPTIPI----------
+>gi|47227730|emb|CAG08893.1| unnamed protein product [Tetraodon nigroviridis]
+---------------GGTLVIPCNtgAIkaEDILITKWKYDKGDGLSGDLLVRQ-RSqnAsiIANDEYKGRVSMAAN----SSLLLSDAKLSDQRTFTCM
+AVV-GANIAEYPVNVVVYK------KPTELKISDKAEELEIGKLTKVGvF------N-AKCCFYLRNFRHLKHQgktriSIHTSVLIDAMTGLSTTSSTL
+EYSAKKEDTN-AQFTC---RTVEEDLV---SQP------------------
+>gi|149754992|ref|XP_001496343.1| PREDICTED: butyrophilin subfamily 1 member A1 [Equus caballus]
+---VIGPPEPILAIVGEDAELPCHLSpnvsAEDMELRWFRKKVSPAVFVHREGREQEGEQMAEYRGRATLVKTNvtAGRVAVKIHGVKASDDGEYRCFFR
+---QEDSFEEAIVQLKVA-ALGSDPHIHMEVQE------SGEIWLQCTSVGWYPEPQ-VQWRtPKGEKFPS---MSEARNPDEEGLFTVTASVVIRDTSM
+KN----VSCCIQNLLLGQEKEGEISIPAPFFPRLTP--WMVA--
+>gi|301610340|ref|XP_002934715.1| PREDICTED: vascular endothelial growth factor receptor 2-like [Xenopus (Silurana) tropicalis]
+--------------ERDNITLICTADkFTYGNVMWFKLSPstvekhhMGWPIPVCKNLVG---LVR-MHATTTNTNGDNVTSALVLHNISMREQGNYVCV
+AQD-----KKTQKKYCLIRHIRIQAQKVPFIYQdLKNQTRNVSETVVVKCQASGTPDPQII--WFKDDDSL---VEDSGIILKDHNRT------LTIQRV
+RKEDE-GIYSCRA---------------------------------
+>gi|158298944|ref|XP_319079.4| AGAP009947-PA [Anopheles gambiae str. PEST]gi|157014131|gb|EAA14041.5| AGAP009947-PA [Anopheles gambiae str. PEST]
+------------VRRGDPVHLFCEYEledNErLYSIKWYKGKRE------FYRYTPQVHpSVQVFStVSgIDVEVryfSISQHSVWNLQK--RTRSQKIP
+TKLSFGAiFFVDLISVRFLLAH--FPSHCPTVTGVQARYRP---GDILRANCTSHNSKP-AANLTWTINDVPIPAqYVKLYRPIRDTFTGLETSIAGVNf
+mVAHDHFVKGKLKLKCSAS--------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+E 1 2268 * 2764 2220 * 2177 * * 2790 * * * * * * * * 3946 * * 1
+ 0 * * 0 * * * 6107 1000 0
+
+A 2 1614 * 4692 * * * * 2550 * 2738 * * 4073 3863 * 3196 4718 * 4689 * 2
+ 0 * * * * * * 7863 0 0
+
+A 3 5661 * 4203 4904 5695 3871 5835 5711 2359 4518 * * * 2402 4054 5578 3673 2467 * * 3
+ 0 * * * * * * 9276 0 0
+
+V 4 6044 * * * 2977 * 4961 2263 * 3004 5035 * 4751 * 5807 6091 4018 1755 * 4852 4
+ 51 6138 5595 0 * * * 9764 1006 0
+
+T 5 * * 6099 4388 4829 * 6118 3962 4987 2872 4283 4950 4461 4990 5402 6193 1651 2843 * * 5
+ 37 6016 6656 0 * * 0 9639 1000 1056
+
+Q 6 4388 * * 3139 5895 * 4558 5180 3568 4442 5885 6225 4096 2088 3358 5318 4196 3055 * * 6
+ 41 * 5155 * * 710 1363 10113 0 1196
+
+S 7 3899 6008 5145 3524 6118 4543 5324 4639 4386 4722 5040 5121 2965 3500 5426 2839 2943 5297 * * 7
+ 0 * * * * 432 1951 10134 0 1376
+
+P 8 4664 * 4386 3477 6226 5501 6431 5464 5408 6203 * 6606 1042 4229 6342 3369 4850 5426 * * 8
+ 19 * 6226 * * * 0 10157 0 1000
+
+R 9 3314 * 6597 3118 * 3400 5364 * 3100 4086 * 4325 3202 6227 4104 2670 4885 4550 * 5998 9
+ 18 6351 * 0 * * 0 10155 1000 1125
+
+N 10 6025 * 3242 3553 4651 5355 5171 3563 5527 4437 * 4094 3661 4794 4114 2592 3490 4712 * 5329 10
+ 0 * * * * 957 1044 10170 0 1125
+
+K 11 6493 * * 4562 6869 5134 6557 3575 3471 2262 4408 * 6674 4137 5364 3318 4351 2288 6501 6246 11
+ 15 * 6554 * * * 0 10224 0 1000
+
+V 12 6503 5390 4156 4001 * * 4225 4059 3965 3881 4933 3860 5411 4773 6811 3346 2889 2861 * 4069 12
+ 13 6793 * 3468 137 0 * 10264 1156 1137
+
+A 13 2102 * * * 5059 4704 * 4465 4277 3990 6514 * * 5800 6364 4645 4147 1412 * 5290 13
+ 0 * * * * * * 10335 0 0
+
+V 14 3552 * 5887 4163 3902 4279 6813 4895 3179 3211 5028 4694 4415 4134 4651 3901 4170 3211 6798 6596 14
+ 26 * 5792 * * * * 10383 0 0
+
+T 15 4334 * 5495 1979 6350 5976 * 5288 5500 3249 5622 * 3144 5257 3354 3470 5176 3496 * 5077 15
+ 16 6532 * 1462 651 * 0 10427 1173 1196
+
+G 16 6957 * 5101 4337 * 492 * * 5212 * * 4211 * 3952 7155 4328 * * * * 16
+ 21 * 6084 * * * 0 10490 0 1196
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+ 106 5744 4254 2781 227 329 2293 10096 1557 2984
+
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+ 39 5215 * 312 2363 1185 836 10219 1449 2271
+
+F 147 5069 5526 4861 * 3972 5263 4853 6349 3979 4581 * 3539 2557 5807 3597 2863 4318 6706 * 3077 147
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+
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+
+D 149 4259 * 3146 3404 5979 3760 6011 6885 3132 5080 * 4468 2413 4199 4810 3687 4430 4796 * * 149
+ 66 5311 5667 446 1912 269 2557 10101 1333 5409
+
+H 150 3374 6818 3483 3388 6575 5033 5789 5306 4223 5274 * 3764 2230 5707 4950 3204 4364 4502 * 7265 150
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+
+V 151 3245 * 6477 4982 5209 5853 4061 2351 4935 3354 5774 5728 3989 6652 5801 5106 4571 2621 6778 4316 151
+ 120 7005 3796 3000 193 681 1410 9985 1056 4053
+
+E 152 5010 5625 3889 3354 6544 4737 6853 * 5821 5019 5856 2899 6004 4421 4631 2581 2272 4985 * 5770 152
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+
+L 153 6790 6516 * * 2689 * 6286 2383 5450 2534 6055 * 6599 * * 5135 6562 1895 6689 3609 153
+ 0 * * * * 1629 563 10183 0 2019
+
+S 154 6018 * 5090 5032 5430 * 4778 4933 4457 5463 4781 5226 * 3294 3720 2290 2225 4193 * 4320 154
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+
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+
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+ 28 7144 6377 1585 585 614 1528 10200 1000 1549
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+N 158 5804 6663 2278 3286 7104 3207 7041 4480 5075 5463 * 1640 5507 5209 5625 4874 6706 * 6733 * 158
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+
+G 159 7099 * 3068 5053 6475 1254 5992 * 5230 6653 * 2893 4745 7183 4551 3449 4931 7048 7122 * 159
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+
+K 160 5027 6759 5307 2895 * 3875 5325 4526 2900 4806 * 4484 5028 3121 3889 3594 3718 3687 * * 160
+ 93 4432 5963 1331 731 * 0 10103 1616 2300
+
+E 161 4728 * 3672 2839 * 5515 5780 6446 4261 3523 5186 4502 2606 4239 4119 4110 4147 3657 * 6216 161
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+H 163 4235 * 3891 3240 6389 6541 4798 3900 3590 4564 6646 5027 2999 4304 4477 3102 3188 5350 * 6537 163
+ 110 5009 4565 433 1947 1095 911 10043 1340 3857
+
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+ 76 5621 4997 550 1658 1434 667 10003 1138 3241
+
+G 165 4382 * 2962 3672 * 2546 6646 4447 4426 6637 * 3715 4742 4984 4973 2603 4019 4784 * 5504 165
+ 71 4694 6696 1706 528 1725 520 9998 1472 3026
+
+V 166 4816 * 7222 4243 6181 3901 4304 3899 5154 4051 6780 4021 5707 3883 5023 3423 2742 2498 * 6635 166
+ 13 * 6788 * * 1614 571 10071 0 2563
+
+S 167 4716 * 4504 3248 4271 5188 5947 3730 4468 5075 * 4283 5004 3556 3403 3177 3499 4406 * 4093 167
+ 43 5095 * 1575 590 2338 318 10037 1282 2175
+
+T 168 5896 * 5111 5890 7025 4913 4076 3847 4311 3990 5278 3969 3856 3769 3780 3867 2281 4464 6384 5796 168
+ 56 6523 5188 3322 152 2763 230 10047 1157 1924
+
+D 169 3789 * 3064 5218 4655 3589 4702 6766 6622 3873 5976 3872 6428 7000 4232 3399 3008 4333 * 3226 169
+ 252 6445 2747 1000 1000 3213 165 10055 1028 2205
+
+P 170 6574 * 4423 4279 4196 3263 6273 4880 5142 4741 5450 3851 2459 4016 5536 2616 4680 4045 * * 170
+ 182 * 3080 * * 1244 791 9791 0 4489
+
+Q 171 4763 6861 6417 3594 6580 6612 6619 4074 4898 3659 5474 4018 3440 3475 4133 2922 3358 3985 * 4602 171
+ 18 6309 * 0 * 2641 252 9946 1134 4409
+
+A 172 4339 * * 4446 * 4589 4215 3534 4478 3410 4558 * 3136 3891 4955 3558 3418 2740 * * 172
+ 143 6121 3648 0 * 4789 53 9794 1023 3936
+
+Y 173 4736 6325 5720 4168 3936 6385 4181 3960 6969 2684 6548 5339 * 4333 3394 3971 3617 2771 * 4531 173
+ 68 4444 * 1751 508 2596 261 9725 1594 4676
+
+K 174 5377 6384 3903 4266 * 5497 4349 3668 2838 4154 6565 4768 3199 3993 2585 4967 4752 4490 * * 174
+ 269 5536 2750 1832 476 * 0 9797 1131 4161
+
+E 175 3439 * 2921 2898 6019 4804 4737 * 6256 5153 5766 2525 5180 4286 3674 3711 4036 6435 * 6217 175
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+
+S 176 3263 * 3049 3696 6767 3258 5090 5260 4339 4531 5493 4093 4693 5471 6399 3098 3025 4557 * * 176
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+
+N 177 5314 * 1754 3597 * 2899 * * 4630 6551 * 3219 5098 5536 4462 2677 4300 * * * 177
+ 90 5743 4588 0 * * 0 10021 1182 2229
+
+Y 178 * * 4719 4282 5280 1166 4711 * 3802 6895 6200 3246 * * 4735 3740 5197 5058 5456 6697 178
+ 135 4209 4834 325 2311 2207 352 9987 1636 2860
+
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+
+Y 180 * 4735 * 4308 2081 5580 5866 4615 6694 3553 6279 6223 6313 * 6764 5078 5142 5136 7237 1470 180
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+
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+ 81 5136 5261 1644 556 3363 147 9631 1192 4827
+
+L 182 3822 6389 * 6188 4278 5881 * 3351 4740 3417 4013 4846 6454 5403 4488 3413 3041 2497 6447 5273 182
+ 0 * * * * * 0 9670 0 4725
+
+S 183 6584 * 6232 4725 5120 * 4740 5357 5445 4721 6096 6231 4438 4531 4656 2521 2046 2771 4812 4990 183
+ 0 * * 2322 322 4004 93 9670 1000 4725
+
+S 184 3899 5403 5585 5853 * 3684 * 6279 6807 3911 6428 6278 5463 * * 763 4696 5048 * * 184
+ 90 * 4051 * * 2035 404 9689 0 4534
+
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+ 0 * * 0 * 656 1453 9703 1000 4329
+
+L 186 4860 6529 * 6854 5264 * 6626 3822 * 523 5412 * * * * * 6439 3674 * 5072 186
+ 0 * * * * 454 1889 9912 0 2285
+
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+ 46 5600 6565 1308 746 * 0 10050 1145 1245
+
+V 188 5797 * * 6686 3573 6640 * 1665 * 1999 5226 5710 * 5781 * 5856 6801 2616 6971 4281 188
+ 0 * * * * * 0 10001 0 1591
+
+S 189 4403 * 4047 5390 * 5246 5292 5777 4500 6691 5879 3377 2466 4894 3696 2435 3094 5833 * 5662 189
+ 14 * 6656 * * * 0 10001 0 1591
+
+A 190 3428 * 4665 4752 6652 5637 3794 6074 3795 3645 4979 4220 2461 5420 4568 2847 4045 5083 * * 190
+ 13 * 6799 * * * 0 9994 0 1762
+
+T 191 4427 5645 4776 4339 6599 4196 5534 4846 4381 3820 6697 5577 6882 3851 4303 2489 3205 2708 * 6822 191
+ 125 * 3590 * * * 0 9974 0 1903
+
+F 192 3804 6677 2966 4004 6677 4236 5318 * 3813 5361 6554 3968 4675 3297 3318 3666 3541 3953 * * 192
+ 99 * 3912 * * 1881 457 9844 0 3271
+
+W 193 4433 * 5781 2871 3977 6871 4648 5587 5234 4255 4225 * 5582 5498 3258 4388 5049 4179 2292 4356 193
+ 57 6526 5172 1000 1000 * 0 9803 1000 3553
+
+H 194 4672 * 2426 2544 * 4394 4644 5416 5486 4580 * 4906 * 4912 3645 2531 3931 5496 * 5577 194
+ 31 6536 6599 3007 192 2972 197 9781 1267 3930
+
+N 195 5798 * 1523 4226 * 3948 4095 5373 3245 5731 5050 3997 4694 4961 5751 3904 4336 6594 * * 195
+ 151 * 3333 * * 2845 216 9785 0 3690
+
+P 196 3022 * 2842 3924 6890 2503 6403 5661 6316 4869 5406 3636 6486 5427 5211 2518 4937 * * 4811 196
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+
+R 197 4253 * 3675 4356 * 1372 * 4159 5360 6093 * 3529 * 4070 3654 3597 5023 * * * 197
+ 0 * * * * 282 2495 8470 0 7912
+
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+
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+
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+
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+
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+Q 205 4920 * 4665 2936 * 4899 4705 6646 2827 6032 6241 4851 * 3736 3075 2792 2703 5696 * * 205
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+
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+ 0 * * * * 377 2120 9654 0 1894
+
+G 208 2374 * 4973 4831 4544 2388 5613 6372 6086 5372 * 4072 * 4686 6446 2613 3493 4826 6269 5353 208
+ 0 * * * * * 0 9626 0 1085
+
+L 209 5267 * * 4746 5593 2009 * 5439 6279 1815 4631 6378 5192 4804 6604 2754 5433 4725 * 6324 209
+ 0 * * * * * 0 9518 0 1085
+
+S 210 5194 6016 4711 2913 6164 5292 5336 * 4821 6327 * 3347 2942 3181 5237 2550 3373 5166 * 6169 210
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+
+E 211 5021 * 2996 2824 * 3860 4649 5016 4540 4580 5215 4023 * 3711 5034 3698 3752 3177 * 5572 211
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+
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+
+D 213 3655 * 2925 4513 * * 4928 * 2567 2947 * 4883 6027 4063 2981 3868 4819 4159 * 5777 213
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+W 215 3687 5550 5830 * 3541 5591 * 2265 * 2725 4506 * * 5787 * * 3390 2959 3733 4152 215
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+
+G 218 4239 * 3797 3864 * 5444 * 4359 5174 * * 2640 4402 3872 4341 2440 4355 2993 * 5445 218
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+ 0 * * * * * 0 8537 0 1157
+
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+
+P 222 * * * 3563 5630 * * * 5016 4375 * * 908 4297 4249 2688 5358 * * * 222
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+
+V 223 3410 * 5282 3630 * 3449 * 2823 4163 3187 * * 2949 * 4174 5149 5246 2901 * 5187 223
+ 0 * * * * * * 8201 0 0
+
+T 224 5175 5187 5267 3080 4102 * 5250 3552 * 3209 * 5293 3952 5140 4286 2616 4178 4373 * 3534 224
+ 0 * * * * * * 8201 0 0
+
+Q 225 5185 * * * * * * 3510 4329 2882 * 5238 4803 2588 4132 3624 * 1712 * 5187 225
+ 41 5155 * 0 * * * 8201 1001 0
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+N 226 * * 4028 4042 * * * 2696 4984 * * 2220 4071 3935 4952 3087 2519 * * 5164 226
+ 0 * * * * * * 7949 0 0
+
+I 227 4075 * * * * * * 1595 4890 2066 * * * 4092 * * 3104 2999 4755 * 227
+ 0 * * * * * * 7949 0 0
+
+S 228 4869 * 4887 * 3878 5105 4818 4770 4765 * * 5002 4853 4871 * 1223 2606 4900 * * 228
+ 0 * * * * * * 7611 0 0
+
+A 229 1758 4732 * 3641 * 4682 * 4896 * 3588 * * 2069 * 3715 3102 * * * * 229
+ 0 * * * * * * 7316 0 0
+
+E 230 * * 3685 1125 * 4619 * * 4843 * 4543 4700 * 4558 * 2906 * 2932 * * 230
+ 0 * * * * * * 7126 0 0
+
+A 231 1798 * 3306 2618 3523 * * * * * * 2484 * * * * 2453 * * * 231
+ 0 * * * * * * 5187 0 0
+
+W 232 * 3095 * * * * 3100 3178 * * * * * * * * 2835 * 955 * 232
+ 0 * * * * * * 4342 0 0
+
+G 233 * * * * * 1456 * * * * * 2636 * * 2538 2727 * 2723 * * 233
+ 0 * * * * * * 3631 0 0
+
+R 234 * * * 2232 * * * * * * 2405 * * * 1322 * 2332 * * * 234
+ 0 * * * * * * 3307 0 0
+
+A 235 425 * * * * * * * * * * * * * * * * 1972 * * 235
+ 515 * 1735 * * * * 2901 0 0
+
+D 236 * * 942 * * * * * * 1060 * * * * * * * * * * 236
+ 0 * * * * 0 * 1725 0 1086
+
+C 237 * 0 * * * * * * * * * * * * * * * * * * 237
+ 0 * * 0 * * * 2256 0 0
+
+//
+�HHsearch 1.5
+NAME 377b625a8e52f94cba9ef9a525219056
+FAM
+FILE 377b625a8e52f94cba9ef9a525219056
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:22:57 2013
+LENG 161 match states, 161 columns in multiple alignment
+FILT 122 out of 212 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHH
+CCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCHHHHHCCCHHHHHHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9863444403388886868999989999786666257888887443568789987349999999854912257279978988899659999999999872
+8999888999699998860686675578878987486899995899999998845498999
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxsxxxxvxxxxxxxxxxpxxPxxxxxxxxxxgxxxLwqFLxxLLxdxxxxxxIxWtxxxxeFklvdpxxVAxlWGxxK
+nkxxMtYeKLSRaLRyYYxkxIlxKvxGkrxxYrFxxxxxxxxgxsxxxxxxxxxxxpxxx
+>377b625a8e52f94cba9ef9a525219056
+VPSYDSFDYEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK
+NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPDAD
+>gi|340380278|ref|XP_003388650.1| PREDICTED: hypothetical protein LOC100638140 [Amphimedon queenslandica]
+------------PSPPCFPppPPPFTTEDFIRPHHPpkpnKRPRKPKPPATVDPSEIKDipASAQLWEFLLKVLKKPKYAYMVSWENqqDG-LFRFHDPP
+AFAALWGRHRNRPSMTYDKVARALRYYYRRDILE-QVGGRLTYKFSPRLCKQFS-----------------
+>gi|268579031|ref|XP_002644498.1| Hypothetical protein CBG14386 [Caenorhabditis briggsae]gi|187027866|emb|CAP32937.1| hypothetical protein CBG_14386 [Caenorhabditis briggsae AF16]
+----------------------------------SYVPSPVYPSPIMNDepmtddelVKMKGPSRLIGFLVHIAMNEKARRALRWTGNGLEFVLVNKELV
+AKMWGNRKhNTKDMDYYKLSRAIREKYEKKnSSNSRgGGKlkkgtrTYSYVFtenaYPDLINQTEKSIE-------------
+>gi|291389803|ref|XP_002711338.1| PREDICTED: Spi-C transcription factor (Spi-1/PU.1 related)-like [Oryctolagus cuniculus]
+---------------------EGNVHQSLQNATENQLVQPAIFP--QKGGKGRKKLRLFEYLYDSLCNPEMASCIQWVDKnKGIFQFVskNKEKLAELWG
+KRKgNRKTMTYQKMARALRNYGRTGEITKIR-RKLTYQFSEAIlqrlspSYILG---KEIFYSQYLQPDQE
+>gi|309366055|emb|CAP22188.2| hypothetical protein CBG_00832 [Caenorhabditis briggsae AF16]
+-----------------------------------------------------SKLCLLPFLRGLLEDESNQHLICWTDKsRLQFRFVDHMKVTELWAAT
+KpgRKVRaMKYDNMCKSLRTFCKQDkTLEKVEGKLFEWRFLES-----------------------
+>gi|189234183|ref|XP_967290.2| PREDICTED: similar to DNA polymerase delta catalytic subunit [Tribolium castaneum]
+-----------------------------------------------------VPPSAPLLYVSNATSSSILLKWKIGNDGgApvSGFTLNYR-------
+----------------------------------------------------------------
+>gi|256077175|ref|XP_002574883.1| hypothetical protein [Schistosoma mansoni]gi|238660099|emb|CAZ31116.1| conserved hypothetical protein [Schistosoma mansoni]
+----------------------------------------------------------DEFILHLFNPnSQYLNCVQWIDKqARIFQIRNPQKLSQLWGY
+YRKNVNMTFESVSRSLRLYYVSGKLERIRGQRNQYRFL-------------------------
+>gi|341878556|gb|EGT34491.1| hypothetical protein CAEBREN_21643 [Caenorhabditis brenneri]
+-----------------------------------------------------RTHRLLRFIPRLINSGDYPDKIIWVNEeEREFRFLEPHFFAKLYGKA
+IGNPDMKYDNMTRSLREYCKQGFAVKTEGQ-SSWRILNNPVALEV-----------------
+>gi|123123380|emb|CAM24571.1| E74-like factor 5 [Mus musculus]gi|123123589|emb|CAM17513.1| E74-like factor 5 [Mus musculus]
+---------------------------------------------------SLQSSHLWEFVRDLLLSPeENCGILEWEDReQGIFRVVKSEAL------
+---------------------------------------------------------------
+>gi|341903063|gb|EGT58998.1| hypothetical protein CAEBREN_15325 [Caenorhabditis brenneri]
+-------------------QSVGSLETFVKKVNLKSVKSPKLP-----------KVNILDFIRDTIESGEHSEVITWVDQnKSGSQIVDPMAVVELYNKA
+TGKRYTKFDNFCRPLRRLAEEGVLFKPKTMRSTWYFVETV----------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 * * * * * * * * * * * * * * * * * 0 * * 1
+ 0 * * * * * * 1553 0 0
+
+P 2 * * * * * * * * * * * * 0 * * * * * * * 2
+ 0 * * * * * * 1553 0 0
+
+S 3 * * * 2673 3605 * * * * * * * * * * 394 * * * * 3
+ 0 * * * * * * 1553 0 0
+
+Y 4 * * * * 2213 * * * * * * * * * * * * * * 350 4
+ 246 * 2673 * * * * 1553 0 0
+
+D 5 * * 425 1970 * * * * * * * * * * * * * * * * 5
+ 0 * * * * * 0 1496 0 1031
+
+S 6 * * * * * 2572 * * * * * * * * * 266 * * * * 6
+ 0 * * * * * 0 1496 0 1031
+
+F 7 * * * * 0 * * * * * * * * * * * * * * * 7
+ 0 * * * * * 0 1496 0 1031
+
+D 8 * * 1334 968 * * * * 3439 * * * * * * * * * * * 8
+ 1334 * 729 * * * 0 1496 0 1031
+
+Y 9 * * * * * * * * * * * * * * * 1171 * * * 847 9
+ 0 * * * * 244 2685 1217 0 1352
+
+E 10 * * * 0 * * * * * * * * * * * * * * * * 10
+ 0 * * * * * 0 1496 0 1031
+
+D 11 * * 458 2474 * * * * * * * 3439 * * * * * * * * 11
+ 0 * * * * 0 * 1496 0 1031
+
+Y 12 * 2213 * * * 2844 * * * 2740 * * * * * * * * * 1013 12
+ 234 * 2740 * * * * 1553 0 0
+
+P 13 * * * * * 3103 * * * * * * 491 * * 2539 * * * * 13
+ 0 * * * * 0 * 1920 0 1036
+
+A 14 3349 * * * * * * * * 3199 * * * 2048 * 1856 1863 * * * 14
+ 0 * * * * * * 1943 0 0
+
+A 15 1515 * * * 3032 * * * * * * * 1055 * * 4435 * * * * 15
+ 0 * * * * * * 1943 0 0
+
+L 16 * * * * * * * * * 1109 * * 1877 3291 * 2627 * * * * 16
+ 0 * * * * * * 2071 0 0
+
+P 17 * 1206 * * * 3460 * * * * * * 2240 * 1921 * * * * * 17
+ 0 * * * * * * 2071 0 0
+
+N 18 * * * * 2069 * * * * 1159 * 1672 * * * * * * * * 18
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+//
+�HHsearch 1.5
+NAME 37afc7acd88623f9df7bf8f423af00c0
+FAM
+FILE 37afc7acd88623f9df7bf8f423af00c0
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:51:38 2013
+LENG 74 match states, 74 columns in multiple alignment
+FILT 107 out of 1036 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECCC
+>ss_conf PSIPRED confidence values
+97499996899999999999999970938999708875899997999999999998289868985899996899
+>Consensus
+xxxxlxvxxlpxxxxxxxlxxxxxxxgvxxxxxxxxxxxafvxfxxxxxaxxaxxxlxxxxxxgxxlxvxxxxx
+>37afc7acd88623f9df7bf8f423af00c0
+HMRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT
+>gi|115402163|ref|XP_001217158.1| polyadenylate-binding protein 2 [Aspergillus terreus NIH2624]gi|114189004|gb|EAU30704.1| polyadenylate-binding protein 2 [Aspergillus terreus NIH2624]
+--RSIFVGNVDYGASPEEIQAHFQSCGsINRVTIlldkftGQPKGMPTSNLQSPVWWPNSGV-KRKCVPWSQS-EVVPKRT
+>gi|335282457|ref|XP_003123153.2| PREDICTED: scaffold attachment factor B1 [Sus scrofa]
+-MAKFCRTGRSIAKESRAVTIVQPALGpSFG--VapcGERsggPAAG---RGTQGEPASFLPLWPVPPAGG----------
+>gi|338723967|ref|XP_001497902.3| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like [Equus caballus]
+-LGSLYLESemgvssvVGARCVGAPSLRSSSHSRlSLPGrpeqgegpgrPHLKKvnvapsPGSVCGESPRR-WAggqRPSCGCRGSkVELHGKLIEVEHS
+--
+>gi|194222666|ref|XP_001498933.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like isoform 1 [Equus caballus]
+-DYELPMEAFPSWSRLSTYTKcrfqlwLYlgsdpGSPPpPSSSQdpgrpPSFPLGTKFAQLEPGRRSLEGARRRSRsveFCKVElhgKIMEVDYS--
+>gi|302763791|ref|XP_002965317.1| hypothetical protein SELMODRAFT_406603 [Selaginella moellendorffii]gi|300167550|gb|EFJ34155.1| hypothetical protein SELMODRAFT_406603 [Selaginella moellendorffii]
+NQGTLVVFNLDVAISIETINSVFKKYGdVKEIREtPIKRTHKFVEFFDVRDAARAKEALDGEDILGSTVKIEFSRP
+>gi|7498075|pir||T30930 hypothetical protein D1007.7 - Caenorhabditis elegans
+--RTLWLKKIPTNIVENDLKQAVESCGeASRVKVIGNRACAYITMENRRSANDVVSKMREVSVAKKMVKVYWA--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+H 1 4182 * 4232 * * * 3215 * * * * 887 3905 * * 3873 4122 4296 * * 1
+ 0 * * * * * * 5669 0 0
+
+M 2 3753 4779 4058 * 4903 5045 * * * 3517 1982 3883 * 4854 2735 3318 * 4950 * 4649 2
+ 0 * * * * * * 7451 0 0
+
+R 3 3515 4135 * 5739 5632 4384 * * 2620 5765 6030 6206 5899 6008 1671 4802 3143 5694 * 4497 3
+ 0 * * * * * * 9159 0 0
+
+K 4 5989 5191 6181 4508 6188 * * 6347 2708 4967 * 4654 6469 5263 3185 2924 1706 4411 * 5980 4
+ 0 * * * * * * 9964 0 0
+
+I 5 5072 5119 * * 5038 6275 6641 2072 * 1424 6556 * * * 5078 5882 6816 2241 * * 5
+ 26 5829 * 0 * * * 10253 1145 0
+
+L 6 * 5795 * 5403 2073 5797 4369 4353 5204 4238 6408 * 5946 4966 5578 5062 5235 3786 4038 1975 6
+ 0 * * * * * * 10257 0 0
+
+I 7 5622 5733 * * 4896 * 6929 1792 5901 2940 4183 * * * 4446 * * 1387 * * 7
+ 0 * * * * * * 10257 0 0
+
+R 8 4280 * 5109 4415 4544 1968 5880 * 3717 6337 * 5515 * * 2892 2662 3287 6560 6447 5072 8
+ 31 6837 6337 0 * * * 10311 1057 0
+
+G 9 5124 * 5448 5336 * 1993 4645 6501 4508 6029 6684 1618 4780 6872 4639 3483 4891 * 6620 6920 9
+ 23 5973 * 2807 222 0 * 10276 1080 1022
+
+L 10 6509 * * * 3464 * * 2159 * 1201 6454 * 4919 * 4872 * * 2893 * 5254 10
+ 42 5732 6673 0 * * * 10311 1194 0
+
+P 11 4413 6767 3550 5114 * 3915 5169 6257 5587 5317 * 5556 1135 5614 5930 3339 5032 5317 * 6839 11
+ 100 4794 5006 1033 967 0 * 10316 1802 1000
+
+G 12 4190 4731 5086 4371 4680 6045 7090 4372 3818 3594 5745 5018 2614 3831 4181 3751 3942 6753 5500 4125 12
+ 12 6882 * 0 * 0 * 10349 1057 1607
+
+D 13 4403 5731 3416 3944 5592 3889 4805 5246 4665 5676 6728 3375 4991 5214 4284 2533 4411 5706 3912 4474 13
+ 0 * * * * * * 10382 0 0
+
+V 14 3601 4119 5673 * 4067 4619 * 3215 4783 3228 5444 * 5973 * 7094 4338 2936 2509 5936 3815 14
+ 0 * * * * * * 10382 0 0
+
+T 15 * 5112 4117 4888 6905 3867 5798 6363 4423 6612 5676 3619 4493 5023 3300 2444 2112 5429 * * 15
+ 39 6572 5948 2000 415 * * 10388 1000 0
+
+N 16 4518 * 3281 2219 6528 3961 6219 4810 3771 3729 6850 7132 5332 4792 3900 5138 5005 4063 3770 5080 16
+ 41 5156 * 1060 943 0 * 10420 1538 1121
+
+Q 17 2993 6482 2690 2609 * 4360 * 5742 3931 5609 6674 4847 5259 3599 4743 2952 4750 5355 6706 * 17
+ 10 7196 * 2000 415 * * 10625 1000 0
+
+E 18 4358 * 2239 2436 5841 5263 6836 4726 3710 5806 6208 4894 5198 3361 4652 4180 3982 5227 6205 * 18
+ 11 * 7049 * * * * 10625 0 0
+
+V 19 5282 * * * 4311 * * 2215 * 1250 5212 * * * * 3793 6791 2784 * 4846 19
+ 44 5045 * 2518 277 * 0 10649 1439 1040
+
+H 20 3905 5781 * 3465 6011 * 4579 4641 2214 3692 5013 5910 * 4903 2516 6049 3782 4806 5702 4815 20
+ 13 6833 * 4248 78 * 0 10649 1000 1040
+
+D 21 3965 * 3208 3209 6703 5059 5640 6065 3225 * * 4339 5184 3934 2270 2939 4842 5433 * * 21
+ 21 6128 * 2585 263 * 0 10649 1112 1040
+
+L 22 3335 6012 * 4502 2706 6237 3628 3644 4948 2616 5180 5088 * * 4332 5101 5535 3685 5616 3991 22
+ 42 5136 * 1429 670 * 0 10649 1373 1040
+
+L 23 5055 4582 * * 1484 * 6313 3733 5119 1771 5656 * * 6065 * 4191 * 4663 * 4961 23
+ 21 6128 * 2322 322 * 0 10649 1112 1040
+
+S 24 3216 5689 4767 3213 6544 3522 5913 6750 3228 4396 5160 3846 4876 5550 3661 2732 6694 4378 * 6607 24
+ 39 * 5246 * * * 0 10649 0 1040
+
+D 25 4325 * 4166 2867 6592 5812 5099 * 2758 6410 * 3693 3611 2755 3584 4050 3989 5758 * 6996 25
+ 14 * 6661 * * 1915 445 10542 0 1617
+
+Y 26 5024 4157 * * 2232 6639 3968 5474 5983 3371 4694 4687 6027 4608 6864 3205 5632 4554 5660 2661 26
+ 94 4161 7130 1504 627 1754 507 10565 2033 1642
+
+E 27 3985 * 5176 4834 * 771 5442 * * 6485 * 3557 5030 6467 4619 5036 5989 5180 6299 * 27
+ 2664 248 * 333 2279 1827 478 10560 9681 1659
+
+L 28 4442 4313 * * * * * 2403 6831 3106 4899 6756 3592 6595 5664 3599 4975 1758 * 5378 28
+ 33 5485 * 1381 699 * 0 10464 1259 2147
+
+K 29 4258 6650 3767 3215 5872 4975 7008 3712 3185 3375 6515 4954 6657 4093 4032 4001 3892 3680 * 4768 29
+ 16 * 6463 * * 2583 263 10464 0 2147
+
+Y 30 4111 * 3909 3929 3607 3679 4452 6598 4431 5075 * 3746 4209 4671 3921 2546 5443 4846 6732 4461 30
+ 54 5644 5880 2008 412 * 0 10450 1264 2175
+
+C 31 3599 3863 6625 6982 4318 4559 5738 2580 5652 2993 4473 * * 6658 6451 3349 6658 2236 * 5641 31
+ 56 5921 5552 3322 152 1008 992 10264 1080 2503
+
+F 32 5062 6687 4440 4228 4003 5395 5702 4300 2488 4688 * 5754 4737 3437 2704 3920 5166 4322 5916 5298 32
+ 86 4903 5348 2045 400 1142 871 10422 1610 2063
+
+V 33 5162 6277 * 6783 3792 * 5051 2151 5351 2568 3843 6670 5225 * 6935 4425 * 2207 5964 4799 33
+ 1362 711 * 2089 387 1779 497 10430 8622 2255
+
+D 34 4358 6793 3515 6452 5686 2408 6871 5111 4199 3473 5626 4433 3318 4674 3302 4324 4817 6240 * 4398 34
+ 200 3029 7108 2634 253 1670 544 10429 3236 2441
+
+K 35 4760 * 4718 3726 4738 4173 5000 4792 2449 4826 7053 3835 4595 4388 2865 4251 4403 4109 * 6770 35
+ 64 4516 * 1615 570 2542 272 10501 1876 2121
+
+Y 36 4706 6685 4858 4780 4978 3537 4878 * 3075 5675 5149 3766 3734 4545 3313 2364 4613 5632 * 6013 36
+ 119 3659 * 1592 582 1852 468 10501 2489 2051
+
+K 37 4733 * 3983 5386 * 5062 4383 * 2086 4362 6911 4394 4742 4798 2095 4369 4893 4266 * 5971 37
+ 37 7079 5797 2000 415 * 0 10507 1000 1916
+
+G 38 4067 6382 4870 5137 5594 1428 5877 6643 4104 6745 * 4621 4760 4891 3459 3238 5076 5237 * 6116 38
+ 52 5776 5887 1134 877 1874 460 10492 1181 2363
+
+T 39 5323 4508 5238 4327 1919 * 4713 3966 6357 4943 6881 5683 * 4599 4725 3698 3994 4373 6853 2840 39
+ 0 * * * * 2112 380 10439 0 2283
+
+A 40 1301 3897 6526 6410 5505 2165 * 6892 4843 6591 6616 * * * 4970 4257 6522 3484 * 6504 40
+ 38 6526 6072 2707 240 1288 760 10521 1247 1955
+
+F 41 6408 5348 5462 6883 1206 * * 3904 6687 2732 6674 7002 * 5971 5227 5765 6920 4972 5220 2981 41
+ 27 5748 * 2585 263 * 0 10458 1170 1841
+
+V 42 4073 5766 * * 6648 6057 * 2231 5404 3417 * * 6526 * 5748 6018 5383 1044 6247 * 42
+ 17 6408 * 3807 107 * 0 10458 1020 1841
+
+T 43 5343 * 3136 2146 5764 4405 5047 4847 3824 5864 * 4633 6526 3519 3605 3947 3317 6282 * 5740 43
+ 34 5427 * 2185 358 783 1255 10458 1269 1841
+
+L 44 * 6786 5778 * 1201 6673 * 7105 * 2835 4869 * 6219 6342 4742 5090 * 4413 6694 2343 44
+ 51 5747 5936 1000 1000 * 0 10641 1199 1235
+
+L 45 3425 * 3881 2938 4744 3971 6742 5631 3686 4848 5059 5162 3675 4362 3666 3580 4128 6856 * 4255 45
+ 0 * * * * 1129 882 10548 0 1608
+
+N 46 5857 5646 2585 4546 * 4959 6832 * 5338 5754 * 2841 6105 5396 4252 1926 2765 * * 5139 46
+ 0 * * * * * 0 10641 0 1235
+
+G 47 3608 * 5008 3727 6319 4362 6832 4656 4262 4878 5868 7216 2362 4536 2735 3859 5790 4231 6492 4250 47
+ 43 6113 6068 0 * * 0 10641 1121 1235
+
+E 48 3506 * 3255 2103 6425 3739 * 5792 4958 5022 * 4024 6463 3644 3547 4366 3315 6693 * 6672 48
+ 30 5608 * 1459 652 420 1986 10567 1240 1527
+
+Q 49 3140 6769 2681 2929 6214 4586 4942 5308 4128 6734 7041 5632 6817 3988 3958 2721 3956 5995 6073 * 49
+ 16 * 6475 * * * 0 10641 0 1000
+
+A 50 1022 4223 * * 6937 4982 * 5863 6242 3887 4358 * 6030 5318 4743 3389 4675 4880 6698 6453 50
+ 93 4630 5515 3816 106 * 0 10623 1808 1220
+
+E 51 3605 * 4127 2884 7159 5183 5805 4351 3599 4636 5032 3597 * 3085 3368 4175 3507 5070 * * 51
+ 0 * * * * * 0 10562 0 1693
+
+A 52 3203 * 4328 3623 5569 5683 * 5792 2896 4326 4708 3717 4158 4213 3170 4207 3778 5699 * 4796 52
+ 0 * * * * 2011 411 10458 0 1693
+
+A 53 1284 3198 * 5215 4558 4606 * 4509 * 4356 5579 * 6641 5491 5065 4593 5148 3124 * 6667 53
+ 31 5546 * 1468 647 1487 637 10482 1471 1473
+
+I 54 3678 5271 * * 5659 6120 * 2454 4437 2208 4057 6803 5294 4842 5116 5132 * 2692 6914 3901 54
+ 13 * 6803 * * * 0 10496 0 1229
+
+N 55 3466 * 4180 2673 * 4971 4671 5921 3182 4842 6534 4549 4776 3307 2990 3638 4076 * * 6903 55
+ 38 * 5248 0 * 1610 572 10471 1000 1443
+
+A 56 2726 5449 4723 3371 4941 4679 4375 5896 2905 4116 6870 4104 * 4508 3441 4094 4153 5240 6553 6783 56
+ 81 6094 4650 0 * 642 1477 10489 1070 1887
+
+F 57 5518 6618 * 6677 3792 * 6802 4675 5278 1158 3274 * 5422 * 3377 4322 5643 4577 5982 6241 57
+ 27 5774 * 1863 464 0 * 10591 1163 2013
+
+H 58 6580 * 3021 5762 5671 5048 2845 6736 4877 6960 * 1955 4568 4158 3708 3570 4268 5531 * 5876 58
+ 12 * 6960 * * * * 10551 0 0
+
+Q 59 4788 * 3902 4751 * 1535 4735 6720 3396 7233 6745 3905 5962 4845 3572 4053 5471 4240 7025 6429 59
+ 128 3555 * 757 1293 * 0 10544 2591 1000
+
+S 60 4347 5190 4379 5395 3181 5965 4331 4748 3242 3242 5182 6919 5209 3619 4501 3663 4010 3848 * 5146 60
+ 39 * 5214 * * 0 * 10488 0 1000
+
+R 61 5774 6059 4403 2805 5149 3837 6616 4435 3324 4018 4537 5053 3891 3918 3582 4423 4384 4169 * 5649 61
+ 29 6575 6775 1000 1000 626 1506 10472 1000 1420
+
+L 62 5248 6244 6101 6654 2408 5820 5952 2588 4966 2080 4973 * 6576 5208 5455 4254 6386 4460 4326 5211 62
+ 103 4717 5022 1725 520 * 0 10444 1545 1206
+
+R 63 4787 6919 2632 3381 4830 3146 3842 * 3841 4929 5169 3333 * 4670 3468 4423 4415 6021 * 6372 63
+ 34 5432 * 972 1029 347 2227 10189 1277 1817
+
+E 64 5012 * 3336 3622 * 1093 5171 * 5093 6706 5562 3758 5157 5427 4596 4929 6587 5476 * * 64
+ 103 4753 4964 1827 478 0 * 10473 1579 1007
+
+R 65 4354 6556 6624 4691 6704 4891 4964 4655 2737 4244 6713 3778 * 4047 1941 4204 5483 3942 * 5122 65
+ 27 * 5753 * * 574 1608 10375 0 1397
+
+E 66 5170 * 4615 3891 6353 6434 5064 4081 2372 5225 5609 4742 3325 4946 2776 3752 3910 5153 * 5242 66
+ 13 6814 * 1000 1000 1480 640 10311 1000 1346
+
+L 67 4587 6260 5635 * 4079 5657 * 2301 * 1445 4668 * 6426 * * 5105 6667 2607 * 5498 67
+ 19 * 6227 * * 0 * 10306 0 1145
+
+S 68 6561 5127 4106 3030 * 6648 5348 6516 2518 5088 6474 4234 5608 4595 2441 3767 3982 3581 * * 68
+ 48 6292 5643 3585 126 * 0 10309 1022 1039
+
+V 69 3041 4605 5940 6373 6520 6427 * 3028 6345 4245 5585 * 5353 5410 4889 6421 6956 1069 * * 69
+ 22 6066 * 2000 415 696 1386 10268 1042 1452
+
+Q 70 5407 * 3501 2515 5580 5730 6602 4435 3173 5248 4900 4343 * 3251 3085 3249 6674 5814 * 4601 70
+ 19 * 6229 * * * 0 10181 0 1039
+
+L 71 5316 * * 4134 3066 5252 4324 4165 4067 3064 4886 5498 4868 5163 3682 6014 5603 3726 3944 3123 71
+ 0 * * * * 973 1028 10126 0 1287
+
+Q 72 1824 * 4023 * 6875 4952 * 6260 3322 4601 6281 5227 5795 4063 4254 2187 4902 6419 * 5243 72
+ 67 4459 * 1297 754 * 0 9905 1182 1029
+
+P 73 3441 * 3137 * * * * 5727 * 4466 5521 4529 1609 4646 4578 2952 4013 3961 * * 73
+ 0 * * 1585 585 0 * 8265 1029 1212
+
+T 74 5007 * * 4045 * 4907 * * 4480 * * 3147 1518 4797 * 4873 1746 * * * 74
+ 0 * * 0 * * * 7216 0 0
+
+//
+�HHsearch 1.5
+NAME 389317ac7330494edc8db3812c39f6d3
+FAM
+FILE 389317ac7330494edc8db3812c39f6d3
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:11:32 2013
+LENG 97 match states, 97 columns in multiple alignment
+FILT 109 out of 310 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEECCCCEEEEECCCCCCCC
+>ss_conf PSIPRED confidence values
+9987798899899999999999987636587549999999999763035636359864899999998078739999998279918989702789998
+>Consensus
+xGgwxxidvxxxvqxlaxfAVxexNkxxxxxxLxxxxVvxxxxxxxxxxxxgxQvVaGxnYxLxixaxxxxyxaxVxxxpwxxxxkLxsFxpxxxxx
+>389317ac7330494edc8db3812c39f6d3
+MGEWEIIDIGPFTQNLAKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLYVYASDKLFRADISEDYKTRGRKLLRFNGPVPPP
+>gi|224089663|ref|XP_002308795.1| predicted protein [Populus trichocarpa]gi|222854771|gb|EEE92318.1| predicted protein [Populus trichocarpa]
+-DGWIPIkNLEnKHVVKIAEFAVKEHNRQA-GSELRLYSIHKGEL----------QVKEGTDYRLLLAVI--GagglHEAVVHE-SYDYSTVLISFVP-L
+---
+>gi|15225164|ref|NP_180758.1| cysteine proteinase inhibitor 2 [Arabidopsis thaliana]gi|125991828|sp|Q8L5T9.2|CYT2_ARATH RecName: Full=Cysteine proteinase inhibitor 2; Short=AtCYS-2; Flags: Precursorgi|4263720|gb|AAD15406.1| putative cysteine proteinase inhibitor B (cystatin B) [Arabidopsis thaliana]gi|110738361|dbj|BAF01107.1| putative cysteine proteinase inhibitor B [Arabidopsis thaliana]gi|330253521|gb|AEC08615.1| cysteine proteinase inhibitor 2 [Arabidopsis thaliana]
+-GGKSGVpNIRtnREIQQLGRYCVEQFNQQA-qneqgnigsiaktdtaiSNPLQFSRVVSAQK----------QVVAGLKYYLRIEVTQPngstrMFDSV
+VVIQPWLHSKQLLGFTP-VVSP
+>gi|47115697|sp|Q7M429.1|CYTL_TACTR RecName: Full=L-cystatin; Flags: Precursorgi|1587012|prf||2205298A L-cystatin
+-GGWIDANVGdTDVKEAARFATEAQSSRS-NSLYHHklLKIHKART----------QVVSGINYEVFIETGTttckksevpledlkrcavpenGvKhlCQ
+AIVWVQAWIPRTKVTKLE------
+>gi|242036759|ref|XP_002465774.1| hypothetical protein SORBIDRAFT_01g045610 [Sorghum bicolor]gi|241919628|gb|EER92772.1| hypothetical protein SORBIDRAFT_01g045610 [Sorghum bicolor]
+--AWVPVlDVNeLVIKQVAQFAVLVYG-LAHHRDLAYVGVVRGQTEQA--------VGGGTNFRLVVVAarpDDGgstaQYDCLVWGVPgsRSDTWKLRR
+FRK-----
+>gi|225717196|gb|ACO14444.1| Cystatin-F precursor [Esox lucius]
+-GAPHEISRNdSGVLKAALHGTYSFNNKT-NDAFLFkpSAIEKAER----------QIVKGLNYIMEVDISRTvchkngqnntdlarcvfqpdgLlkqtf
+hCHFEVWTIPWLNFMKTI---------
+>gi|241999596|ref|XP_002434441.1| secreted cystatin, putative [Ixodes scapularis]gi|215497771|gb|EEC07265.1| secreted cystatin, putative [Ixodes scapularis]
+-GGYTRKtDhQTnPKYLELAHFATSSWSAGQ-ANKAYYDTVEEVLEAQT-------QVVAGINYKLTLKVAESvceitsqytkeactpkpdavrkTCTTV
+IYEKVWENMKSVSSFS------
+>gi|109093141|ref|XP_001097898.1| PREDICTED: cystatin-D [Macaca mulatta]
+-GDIHAADLNdKSVQRVLNFTIREYNKDiS-KDEYYSrpLQVMAA--YQ--------QVVGGVNYYFNVKfgrttctKSQPNldncpfndqpelkeeefC
+SFQINEVSQENKISILNYK------
+>gi|123408571|ref|XP_001303223.1| Clan IH, family I25, phytocystatin-like peptidase inhibitor [Trichomonas vaginalis G3]gi|121884585|gb|EAX90293.1| Clan IH, family I25, phytocystatin-like peptidase inhibitor [Trichomonas vaginalis G3]
+-GAAKPANVQdEHVIQAFKDAIALGNQKN-GTTLEYIQLLSATQ----------KVVSGYIFEGVVKTNDGDYKVKIWCKPGNTEKELQLFE------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 3653 * * * * * * 2882 * 3069 1804 * * * * 3745 * 1714 * * 1
+ 0 * * * * * * 3332 0 0
+
+G 2 3574 * 6210 * * 231 * * * * * 6487 * 6201 6796 5898 * * * * 2
+ 0 * * * * * * 5173 0 0
+
+E 3 4119 * * 3555 6190 679 * * 3799 * * 6147 6250 5844 5372 4783 6361 5057 * * 3
+ 39 5230 * 0 * * * 5547 1069 0
+
+W 4 5392 * * 6612 5160 * * 3772 6731 4656 * * 3612 6804 5007 6956 6427 5927 792 3639 4
+ 28 5716 * 2609 258 * * 5565 1037 0
+
+E 5 4708 * * 3146 4823 7366 4819 3662 3954 * 5277 4398 * 4462 4298 2811 2332 3665 7470 4904 5
+ 48 4942 * 1125 885 * * 5565 1104 0
+
+I 6 4393 * 2886 3215 * 6731 * 4034 3616 * * 4758 1562 6042 5067 5253 3836 4624 * * 6
+ 12 6907 * 0 * * * 5643 1000 0
+
+I 7 2426 6750 * * 6675 6871 * 1320 4811 4438 5580 6512 * 6478 4737 4135 6909 2661 * * 7
+ 840 1180 * 65 4510 * * 5643 2910 0
+
+D 8 5711 * 893 4632 6864 6043 6295 * 5652 * * 1938 5928 5685 7107 4592 * * * * 8
+ 17 6419 * 0 * * * 5667 1002 0
+
+I 9 4118 * * 4981 6881 * * 2492 * 4180 5383 * 2786 5631 6984 7246 4362 1261 * * 9
+ 47 5635 6411 0 * * * 5665 1049 0
+
+G 10 5236 * 3964 4809 * 3446 5069 6309 4131 * * 1645 * 3762 6674 2793 2890 * * * 10
+ 2780 227 * 151 3330 0 * 5651 4437 1001
+
+P 11 4698 * 4248 3437 * 5001 5418 6923 2899 3797 * 5778 1342 5810 5107 5187 4235 7040 * * 11
+ 21 6118 * 0 * * 0 5673 1028 1000
+
+F 12 4891 5418 3352 1891 3553 4106 2892 * 3953 4303 * 5784 * 4333 5803 5065 6738 4533 * 6150 12
+ 0 * * 1000 1000 0 * 5673 1000 1000
+
+T 13 3348 * * * 5858 * * 1895 * 5890 * * * * * 6428 3750 1130 * 4160 13
+ 0 * * * * * * 5699 0 0
+
+Q 14 6678 * 4361 3892 * * 6543 3431 3138 3812 * 6913 * 1121 4053 * 6719 4372 * * 14
+ 0 * * * * * * 5715 0 0
+
+N 15 4314 * 3439 1830 * 5567 * * 2776 6487 * 3917 * 2244 3791 5393 7194 7146 * 6545 15
+ 0 * * * * * * 5715 0 0
+
+L 16 1981 * * * 6682 * 5940 3238 * 1503 4544 * * * * 6428 * 2325 * 7004 16
+ 0 * * * * * * 5715 0 0
+
+A 17 912 * * * 6082 2065 * 5825 * 2994 6727 * * * * * * 4010 * * 17
+ 12 6917 * 1585 585 * * 5660 1000 0
+
+K 18 4513 6340 4389 3537 6943 6188 4346 * 2083 5175 6597 3292 5696 3970 2181 5730 4633 * * * 18
+ 16 * 6526 * * * * 5683 0 0
+
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+
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+
+N 91 4823 * 4373 3594 * * * * 1856 3778 * 3160 * 5365 4121 3472 3018 3694 * * 91
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+
+G 92 4384 * * * * 2995 5511 * * 3851 * * 718 4745 4675 5555 5066 * * * 92
+ 1951 * 432 * * 0 * 4306 0 1204
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+P 93 * * 3024 * * * * * 3153 * * * 735 * * 2610 * * * * 93
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+
+V 94 1489 * * * * * * 5162 * 2659 * 4847 * * * 3877 * 1495 * * 94
+ 165 3206 * 1000 1000 * * 3543 1036 0
+
+P 95 3846 * * * * * 3895 * * * * 2075 1435 * 3822 4033 4057 3961 * * 95
+ 0 * * * * * * 2989 0 0
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+P 96 * * * * * * * * * * * * 1175 * * 844 * * * * 96
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+
+//
+�HHsearch 1.5
+NAME 38a44a0cf7d477bebe8b2606d936e643
+FAM
+FILE 38a44a0cf7d477bebe8b2606d936e643
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:20:43 2013
+LENG 102 match states, 102 columns in multiple alignment
+FILT 113 out of 510 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
+CC
+>ss_conf PSIPRED confidence values
+9988788888766523689988740578986799999997799634399999999999999999999999999982997675999999999759867787
+98
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxixxaxixrlaxxxgvxxisexalexlxeaxexxxrxVixxaxxxaxhaxRktVtxxDIxxAlkxxgxxxygf
+xx
+>38a44a0cf7d477bebe8b2606d936e643
+SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF
+GG
+>gi|222823380|ref|YP_002574954.1| NADP-dependent alcohol dehydrogenase [Campylobacter lari RM2100]gi|222538602|gb|ACM63703.1| NADP-dependent alcohol dehydrogenase [Campylobacter lari RM2100]
+-----------------------------------DFSLEHGIYPEIElIKPSEIDKAYENLTsgkakfRYVIdmseqD---------------------
+--------------
+>gi|281210047|gb|EFA84215.1| hypothetical protein PPL_03292 [Polysphondylium pallidum PN500]
+-----------------------------------QFIDEGkllksPLIGKV-fKGIESVPSAHDYLEnnqesfgKVQV-----YSYFFD-------LIV
+CPLNKIVDDKVD---
+>gi|313903307|ref|ZP_07836699.1| zinc-binding alcohol dehydrogenase family protein [Thermaerobacter subterraneus DSM 13965]gi|313466395|gb|EFR61917.1| zinc-binding alcohol dehydrogenase family protein [Thermaerobacter subterraneus DSM 13965]
+-----------------------------------AVAASVPLQVAVQrYPFEQANQALAAVKesrvrgAAVLvldepagr-------------------
+-----------------
+>gi|254504613|ref|ZP_05116764.1| Alcohol dehydrogenase GroES-like domain family [Labrenzia alexandrii DFL-11]gi|222440684|gb|EEE47363.1| Alcohol dehydrogenase GroES-like domain family [Labrenzia alexandrii DFL-11]
+-----------------------------------AFAAEGKVASHYAtESLDNINDIFGRMElgkidgRIVMtl-------------------------
+-----------
+>gi|303391124|ref|XP_003073792.1| transcription initiation factor TFIID subunit TAF6 [Encephalitozoon intestinalis ATCC 50506]gi|303302940|gb|ADM12432.1| transcription initiation factor TFIID subunit TAF6 [Encephalitozoon intestinalis ATCC 50506]
+----------------------------FSKETLKSFAQSKGISNIDDDALRVLSQDLEYRIKEVCQEGSKFMVGSKRTKLSIDDINYALISRnVDPLFG
+YDP
+>gi|50423321|ref|XP_460243.1| DEHA2E21626p [Debaryomyces hansenii CBS767]gi|49655911|emb|CAG88519.1| DEHA2E21626p [Debaryomyces hansenii]
+---------------------IKEQDRFLPIANVGRVMKKALPPhaKLSKESKECIQECVSEFISFITSHASDRGRLEKRKTLNGEDILWSMYILGFENY
+----
+>gi|328769656|gb|EGF79699.1| hypothetical protein BATDEDRAFT_7075 [Batrachochytrium dendrobatidis JAM81]
+---------------------------------ISLILQAAEVDDYEPRIIPQLLEFAHRYVQDVLQDSQVFADHAGHKDLEVDDIRLAIES--RVAHSF
+--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 * * * * * * * * * * * * * * * 0 * * * * 1
+ 0 * * * * * * 1000 0 0
+
+G 2 * * * * * 985 * 1015 * * * * * * * * * * * * 2
+ 0 * * * * * * 1522 0 0
+
+R 3 * * * * * 1015 * * * * * * * * 985 * * * * * 3
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+
+G 4 1559 * * * * 598 * * * * * * * * * * * * * * 4
+ 0 * * * * * * 1840 0 0
+
+K 5 * * * 2280 * * * * 772 * * * * * 2262 * * * * * 5
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+
+G 6 * * * * * 747 * * 2280 * * * * * * 2333 * * * * 6
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+
+G 7 * * * * * 337 * * 2262 * * * * * * * * * * * 7
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+
+K 8 * * * * * * * * 779 * * * * * * 1262 * * * * 8
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+
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+
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+
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+
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+
+G 13 * * * * * 337 * * * * * * * * * 2262 * * * * 13
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+
+G 14 * * * * * 772 * 2262 * * * * * * * 2280 * * * * 14
+ 0 * * * * * * 2366 0 0
+
+A 15 1369 * * * * * * * 1297 2280 * * * * * * * * * * 15
+ 319 2333 * 2000 415 * * 2366 1185 0
+
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+
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+
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+ 344 * 2237 * * * * 3714 0 0
+
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+
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+
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+
+I 26 4955 * 2748 2641 * * * 2308 4990 3499 4980 3543 * * 4879 3241 * 3650 * * 26
+ 0 * * * * * * 5448 0 0
+
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+
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+
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+ 0 * * 5285 37 * * 6489 1013 0
+
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+
+A 33 2151 5816 4889 * 4456 * * 4626 5491 * 5983 3228 2133 * * 2773 3359 * * 5584 33
+ 21 6099 * 2322 322 * * 6584 1000 0
+
+I 34 5279 * * * 2862 * * 1382 * 3034 4151 * * * * * * 1985 5508 * 34
+ 0 * * * * * * 6755 0 0
+
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+
+A 38 1251 4998 * 6408 5114 5831 6129 3294 * 3118 4204 * * 6782 * 4964 5432 2917 * 6990 38
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+
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+ 168 3500 5538 364 2166 0 * 9066 1750 1064
+
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+ 13 6837 * 2585 263 0 * 9041 1017 1108
+
+I 46 4994 6060 6135 3976 4130 * 5981 2189 4221 3323 3969 * 5180 5714 6714 * 5337 2189 4654 5245 46
+ 20 * 6153 * * * * 9092 0 0
+
+S 47 4093 5268 6454 3812 * 5082 * 3012 6602 * * 5258 4992 5709 5989 1737 3525 2398 * * 47
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+//
+�HHsearch 1.5
+NAME 38dd9955ccfba0d5be1c28ca6ce0751d
+FAM
+FILE 38dd9955ccfba0d5be1c28ca6ce0751d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:54:43 2013
+LENG 76 match states, 76 columns in multiple alignment
+FILT 134 out of 700 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9876579998135771681795692599990899999737999987899897598708999999999863457899
+>Consensus
+xxxxxxxxxxCCxxxxxxxIpxxxIxxyxxxtsxxCxxxaVIfxtkxgxxiCxdPxxxWVkxxixxlxxxxxxxxx
+>38dd9955ccfba0d5be1c28ca6ce0751d
+QPDAINAAVTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSIDHLDKQTQTPKT
+>gi|293630689|gb|ADE58987.1| CC chemokine CK7 [Sparus aurata]
+IVEPESINKSCCLMATRKPVPGKIIQNVER-SHSSCPVPAIILTTTRGRQICLDGSWIWAERVLRAFETSP-----
+>gi|229365878|gb|ACQ57919.1| C-C motif chemokine 19 precursor [Anoplopoma fimbria]
+----AEVPRDCCLSVKNKEVKKILVVDYSRQISGgGCSIDATVLVTRGGRKLCVPADESWIQAVMKHVDHL------
+>gi|297673795|ref|XP_002814937.1| PREDICTED: c-X-C motif chemokine 10-like [Pongo abelii]
+-----------CISISNQPVNPRSLEKLEIIpASQFCPHVEIIATMKKkGEKRCLNPESKAIKNLLKAVSKERS----
+>gi|327281413|ref|XP_003225443.1| PREDICTED: stromal cell-derived factor 1-like [Anolis carolinensis]
+--------YRCPCRYVESSVAKSHIKHLKILTVPGCSLQ-IIARLKNSsKQICIDPKLKWIQEYLEKYLH-------
+>gi|139472813|ref|YP_001129363.1| K4.1 [Human herpesvirus 8]gi|1778606|gb|AAC56951.1| similar to beta-chemokine genes [Human herpesvirus 8]gi|2246547|gb|AAB62672.1| ORF K4.1 [Human herpesvirus 8]gi|87196834|gb|ABD28860.1| K4.1 [Human herpesvirus 8]gi|261853486|gb|ACY00408.1| K4.1 [Human herpesvirus 8]gi|312275154|gb|ADQ57891.1| K4.1 protein [Human herpesvirus 8]
+-----IMASDCCENSlSSARLPpDKLICGWYW-TStVYCRQKAVIFVTHSGRKVCGSPAKRRTRLLME-----------
+>gi|149639456|ref|XP_001507067.1| PREDICTED: similar to shroom family member 3 protein [Ornithorhynchus anatinus]
+-----LMPRTCnCLKHTSNFIHPRFIRRLEKFeAGPYCRRLELLVILKSNQIVCVDPDAQWMKELLRYMDQRSREP--
+>gi|327274220|ref|XP_003221876.1| PREDICTED: c-X-C motif chemokine 11-like [Anolis carolinensis]
+-----------CQGRRMIRVNMLDVAEVEYHrSSPSCSEDELIIFFKTNGkTGCLDITKKQGRIIKEAIMRKR-----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+
+H 66 3699 5383 5584 3863 4603 4792 4531 4495 2146 5169 4640 4257 * 4338 2990 5470 4995 6992 * 4025 66
+ 0 * * * * 0 * 7174 0 1000
+
+L 67 5085 * * 6955 3622 * * 2751 4521 1263 3751 * 5931 4537 6255 6682 * 3921 5774 4982 67
+ 10 7235 * 2000 415 * * 7164 1011 0
+
+D 68 7077 * 2269 3022 7239 5380 * 5625 2572 3865 5230 3629 4837 3864 4681 3556 5148 * * 6519 68
+ 17 6428 * 0 * * * 7110 1007 0
+
+K 69 4088 * 5029 3099 * * 4656 6679 2012 4463 5155 3538 5056 4450 3734 3696 3897 4901 6906 * 69
+ 24 5937 * 2000 415 * * 7064 1034 0
+
+Q 70 4392 4927 6739 4323 * 5734 * 6793 1861 4761 6019 4841 5749 4075 2017 3114 5095 * * * 70
+ 44 5046 * 0 * * * 6983 1062 0
+
+T 71 3125 6249 4857 * 5966 5696 6186 5964 2439 4216 4213 3193 3464 4825 4277 3208 3547 * * * 71
+ 0 * * * * * * 6458 0 0
+
+Q 72 3075 * 5413 4368 5129 * 4289 * 2688 * 4556 5086 * 1906 3889 4620 3807 5198 * 5112 72
+ 59 4642 * 1000 1000 * * 5914 1000 0
+
+T 73 4785 * * 3580 * * * 4887 1346 * * * 3645 3472 3608 4494 2675 * * * 73
+ 0 * * * * * * 5394 0 0
+
+P 74 2878 * * * * 2560 * * 3592 3839 * 4031 2008 2632 3826 * * * * * 74
+ 0 * * * * * * 4196 0 0
+
+K 75 * * * * * * * * 1219 * 2522 * * 2884 * 1938 * * * * 75
+ 0 * * * * * * 2968 0 0
+
+T 76 2615 * * * * * * * * * * * 1038 * * * 1515 * * * 76
+ 0 * * 0 * * * 2838 0 0
+
+//
+�HHsearch 1.5
+NAME 3b63735b431780c58c19dd032083016e
+FAM
+FILE 3b63735b431780c58c19dd032083016e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:32:41 2013
+LENG 185 match states, 185 columns in multiple alignment
+FILT 122 out of 1583 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEECCCCEEEEEEEECCCCCEEEECHHHCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEE
+EECCCCCCCEEEEEEEEEECCCCCEECCEEECCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCEEEEEHHHHHHHCCEEEC
+>ss_conf PSIPRED confidence values
+9487789949987888999982987899989678579868999758963888996567898888999988877468553354436876778999999999
+8069987647999887870555715405365021258998578499999999999734788877787899998998976591989
+>Consensus
+xxxGxxixxxxxxctxGxxvxxxxxxxiLTaxHcxxxxxxvxxxxxxxxxigxxxxxxxxxxDiAllxlxxxxxxxxxixxxxxxxxxxxxxxgxxvxxx
+GxxxgxxxgxixxxxxxxxxxxxxxxxxxxxxxxxxxxGDSGgPvxxxxxxvGixsxgxxxxxxxxxxxxxxixxxxxxlxxxxx
+>3b63735b431780c58c19dd032083016e
+ISGGDAIYSSTGRCSLGFNVRSGSTYYFLTAGHCTDGATTWWANSARTTVLGTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRR
+GSTTGTHSGSVTALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYSGTRAIGLTSGGSGNCSSGGTTFFQPVTEALVAYGVSVY
+>gi|183981692|ref|YP_001849983.1| hypothetical protein MMAR_1678 [Mycobacterium marinum M]gi|183175018|gb|ACC40128.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
+--PGLEIHQGSVVCVIGFV--EPQMRIAFSAGRCNGDP-MVT--DRYGNAVGAVTLAGqatvsevavdgaAAGVDYEVITLAPEVAA-TDLLPTGLRLQs
+kpGFRVQPGARVCE-ATAARQSCGRVDTVT------E-----SRFVIAgMDADQHEIGAPVYVlddDnHaLIAGLLDGVRGST-----------------
+------
+>gi|163757015|ref|ZP_02164121.1| hypothetical protein KAOT1_09946 [Kordia algicida OT-1]gi|161323019|gb|EDP94362.1| hypothetical protein KAOT1_09946 [Kordia algicida OT-1]
+--SGQEISMtnaSQAKGTIGAIVELEnhKGDFILSNWHVMMQSSGdLGAGIdNKsDEKIAELfWGLNNEYYDIALSKIISKKQIIKER-KIDTVKKYKDI
+RIGDSVKIEGFKSGFDKNTIYSKNAYVKVGNEERIfKNQIMTGKLSVSGDSGSIVLNKKnEIIGIVCAGDNkKF-----SICNHLHSLLSS------
+>gi|313224875|emb|CBY20667.1| unnamed protein product [Oikopleura dioica]
+-------------------------------------------------------------QYSCMLHFKEDILWsgtdDSYTN-TPCM-PQEPIVah-D
+QECWIAgwGSTAV-igiPSDELRSRGVRLrNDTDcQDQFl--YKNSGACiEGeypvsgeiyheapscGNDIGGPVICpiDGkaVLAGVMGPGG--CGIyG
+RKSLYLDVFTQM--------
+>gi|281357362|ref|ZP_06243851.1| peptidase S1 and S6 chymotrypsin/Hap [Victivallis vadensis ATCC BAA-548]gi|281316393|gb|EFB00418.1| peptidase S1 and S6 chymotrypsin/Hap [Victivallis vadensis ATCC BAA-548]
+------------GSGTGFVIDGNR---IITNAHVVAYPTFITVRKP-GDQTRYPAKVVAVNHecDLAILTVEDPKFFDG--IKPLELA--DLPPMQSSVA
+AVGYPVGgdnvsITVGVLSRVEPL-EYShSGKEL-LGAQIDAAINPGNSGGPVLHEGKVVGIAFQGLgesQNI-----GYMIPC------------
+>gi|156378061|ref|XP_001630963.1| predicted protein [Nematostella vectensis]gi|156217994|gb|EDO38900.1| predicted protein [Nematostella vectensis]
+------------------------PLWLLTAAHCvirSNNSADYTVIVGAHKrvldgTehkLStFYKHEKYvggkdKKHDLALIKLAKPATFSTKVSPVc
+LPKQGDLMKE-RE-NCFAtgwGRVSSSLlhsrAKKLQQGKAPIvDHQTcirkISQWkDGIDQQsMVCAGgagnsvcHGDSGGPLVCeesgHWVLRGAASW
+vSSMTCPGKKYAIYVRVSS----------
+>gi|158299042|ref|XP_001238092.2| AGAP010015-PA [Anopheles gambiae str. PEST]gi|157014178|gb|EAU76076.2| AGAP010015-PA [Anopheles gambiae str. PEST]
+----------QFLCS-GNIITPS---HVLSLEYCFEiFVFQMSIYGGgtsplsggisiPVNKITIHPNf-EYrygrSDFDVAVISVPINTFQgMANMASI
+ALQ--TSEVLPGSRcyVIGWGVSKifgpidlnGLHYGTMNIVSQSAcsrSWAsvNENVTSNMICAKYcfgvDICYGDLGGPLVCDGKLTGIIGYTEYGCT
+KNNPAVFTRIMApsIR--------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+I 1 * * * * * * * 0 * * * * * * * * * * * * 1
+ 0 * * * * * * 2177 0 0
+
+S 2 2674 * * * * * * 2633 2487 * * * * * 3357 2599 * 3617 * 2648 2
+ 0 * * * * * * 4916 0 0
+
+G 3 2714 * * * * 658 * * * * * * 2707 * * 4039 * * * * 3
+ 0 * * * * * * 6060 0 0
+
+G 4 * * * * * 0 * * * * * * * * * * * * * * 4
+ 0 * * * * * * 6498 0 0
+
+D 5 2874 * 2007 4636 * * 4640 2986 * 4416 4526 * * 4363 * 3219 3636 3616 * * 5
+ 0 * * * * * * 6498 0 0
+
+A 6 1999 * * 2500 * * * * 1910 * * * * 4618 3586 3484 4475 4360 * * 6
+ 0 * * * * * * 6498 0 0
+
+I 7 * * * * 4441 * * 779 * 2519 * * * * * * 3442 4028 * 4534 7
+ 0 * * * * * * 6498 0 0
+
+Y 8 4721 * * 4681 4441 3126 3470 4316 * * * 2575 * 4360 * 2619 4618 2976 * 3738 8
+ 0 * * * * * * 6498 0 0
+
+S 9 * * 4636 4529 * 2943 4441 3014 * 3504 3485 4703 * 3470 4579 3552 4682 3333 * 4467 9
+ 915 1090 * 1165 852 * * 6498 2894 0
+
+S 10 * * 4876 4800 * 1573 * * 4815 * * 2203 3529 * 4936 2444 4713 * * * 10
+ 52 4834 * 0 * * * 6928 1000 0
+
+T 11 5501 * 3694 5575 * 1551 5185 5568 * * * * 5465 2879 * 2061 4618 5444 * 5167 11
+ 104 3848 * 1908 447 * * 7943 1410 0
+
+G 12 2495 * * 4571 5391 2272 4607 4781 4695 4745 * 5498 * 5766 * 2419 4653 4440 * 3588 12
+ 129 3991 5449 1391 692 * * 8385 1378 0
+
+R 13 3188 * 5871 * 5708 * 6123 3428 3925 4295 5726 * 6173 4364 3353 2573 3899 3487 6026 3168 13
+ 0 * * * * 0 * 8688 0 1085
+
+C 14 3598 1003 * 6081 * 1596 * * * * * * * * 5364 5864 * 6021 * 5972 14
+ 0 * * * * * * 8759 0 0
+
+S 15 3821 * * * * 2883 * * * * 5926 6072 * * 6332 2267 966 5037 * * 15
+ 205 * 2919 * * * * 8844 0 0
+
+L 16 2867 * * * 3907 6046 * 3595 * 1957 4569 * * * * 3071 2439 3393 * * 16
+ 0 * * * * 0 * 8531 0 2075
+
+G 17 3964 * * * 6341 368 * * * * * 4313 * * * 4084 4659 * * * 17
+ 0 * * * * * * 9150 0 0
+
+F 18 2396 4103 * * 1525 * 6469 6115 * 4059 6498 5121 4856 * * 5335 4645 3523 5359 3875 18
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+
+N 19 3209 * * * 4860 6022 * 2451 * 2472 * 4464 5342 * 5079 3306 4674 2146 6239 * 19
+ 42 * 5130 * * * 0 9154 0 1021
+
+V 20 2776 * * * 5983 4762 * 2142 * 2982 5902 * * * * 6304 * 1347 6118 6461 20
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+
+R 21 5231 * 4146 4603 4958 4768 6249 * 2736 * * 3728 5816 6400 2889 2551 2689 4399 * 5039 21
+ 71 4826 6323 0 * 0 * 9061 1282 1613
+
+S 22 3756 * 2256 3973 * 3560 5851 5422 5303 4222 * 2837 3323 4258 3793 4459 * * * 4686 22
+ 127 5482 4013 597 1561 * 0 9193 1151 1000
+
+G 23 3835 * 3361 4230 * 2521 5259 5325 3076 * * 2610 3733 * 4103 3797 3918 * * * 23
+ 555 3400 2153 2577 265 * 0 9091 2098 1656
+
+S 24 2981 * 3340 4795 * 1946 4802 * 3385 4954 * 4383 5648 4583 3695 3655 4904 5999 * * 24
+ 552 2042 3734 511 1745 * 0 8532 3280 3812
+
+T 25 3967 * 3936 3491 * 3683 * 6101 5090 4932 5711 3608 3776 3883 3279 3428 2855 4754 * 6149 25
+ 74 4321 * 1760 505 1145 868 9002 1362 4415
+
+Y 26 6227 * 6282 4454 5500 3012 6429 5498 3268 4183 6538 3196 5360 4140 2725 4341 3599 4818 5248 4517 26
+ 19 6227 * 1000 1000 252 2644 9392 1038 3001
+
+Y 27 6735 5412 6923 * 2573 3680 3721 4582 5745 4256 5551 * * * 5265 5638 4582 5064 2463 2294 27
+ 35 5380 * 649 1464 0 * 9643 1277 1214
+
+F 28 4198 * * * 3394 4116 * 1683 * 2714 5740 * * * * 6734 6394 1904 6574 6480 28
+ 0 * * * * * * 9706 0 0
+
+L 29 5331 * * * 4601 6539 * 3420 * 765 5998 * * * * * 4496 2609 * 5825 29
+ 0 * * * * * * 9706 0 0
+
+T 30 6571 * * * 6507 * * 6249 * 4628 5407 * * 6539 * 2846 478 4909 * * 30
+ 0 * * * * * * 9706 0 0
+
+A 31 800 5627 * * * * * 6624 * 6331 * 2751 * * * 3084 3517 5114 * * 31
+ 0 * * * * * * 9706 0 0
+
+G 32 1523 6792 * 5489 6591 2016 6601 * 3700 * 5451 3731 * * 4131 4318 * * 5651 4305 32
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+
+H 33 6492 * 6591 * * * 226 * * 6791 * * * 4192 6442 6574 6211 6373 * 6331 33
+ 0 * * * * * * 9706 0 0
+
+C 34 5687 807 * * 6666 * * 4577 * 5456 * * * * * * 6211 1753 6507 6249 34
+ 29 5654 * 2641 252 * * 9706 1173 0
+
+T 35 3117 * 5009 6464 3498 2924 6771 3818 6495 2810 5320 6428 6230 * 6604 6610 4966 2139 6623 4363 35
+ 17 6457 * 0 * 0 * 9671 1000 1028
+
+D 36 2975 6591 4101 3227 5620 2904 5154 6246 3538 5576 4347 3800 5882 4242 5721 3928 3994 5073 * 5196 36
+ 96 4881 5025 1860 465 * * 9706 1334 0
+
+G 37 3605 * 2579 5265 6292 2430 6877 6803 4183 5078 5838 3658 3660 3439 5646 4279 4905 4616 * 6602 37
+ 86 4376 6698 1074 930 1885 455 9655 1697 1329
+
+A 38 2677 5779 3735 4165 4903 2464 5292 6703 4815 4611 5852 4362 4388 6451 6332 3537 5054 3727 6367 5218 38
+ 82 4995 5400 1770 501 1148 866 9647 1285 1338
+
+T 39 3820 * 2968 4295 6284 3169 6585 4411 3680 5319 6450 3265 5659 4038 4726 3526 3285 5526 * 5582 39
+ 165 3507 5657 1672 543 294 2438 9633 2176 1551
+
+T 40 3612 6586 4127 3781 4924 4957 5596 4555 3671 * 4966 3605 4849 3951 4486 3554 2585 5172 * 4910 40
+ 388 2085 * 2466 288 747 1307 9675 4166 1334
+
+W 41 3623 6571 6848 5388 5259 * 5729 3096 5730 3086 6325 * * 5421 4359 5663 4443 1568 4438 4523 41
+ 76 4581 6695 1696 532 0 * 9677 1504 1035
+
+W 42 5133 6464 4566 4495 5132 3742 4214 4247 4400 5359 * 7030 4984 3894 4025 4036 3418 3223 5188 2889 42
+ 144 4042 4874 1960 429 * 0 9682 1782 1069
+
+A 43 3579 6873 5045 4944 5036 3697 * 3110 5492 3399 6638 * 3796 5381 6096 4141 3769 2219 * 4677 43
+ 182 3578 4836 582 1591 1090 916 9613 2110 1665
+
+N 44 6523 * 4976 3538 * 2308 4534 5555 4041 5284 * 3249 4701 4071 3853 3415 4905 3576 * 4831 44
+ 190 4802 3513 1329 732 423 1976 9644 1421 2094
+
+S 45 4422 * 3055 4370 5587 3289 5578 5384 5600 2267 6412 4927 5098 4635 4046 3717 3592 4485 * 6630 45
+ 388 2420 4345 1935 437 1377 701 9594 3357 2673
+
+A 46 3737 * 4394 5476 5123 1579 3928 6080 5654 6105 * 4323 6450 6911 3713 3467 4763 5655 * 3579 46
+ 558 1870 4406 2155 367 1065 938 9553 4213 2696
+
+R 47 3488 6495 3043 3384 6801 3360 5836 5462 3140 5391 6156 4149 4375 4126 4132 4420 3513 5715 * 6312 47
+ 420 2099 5710 1867 462 552 1654 9533 3840 2606
+
+T 48 3792 * 3417 4248 4848 2527 6431 * 4274 4845 * 3646 6036 5613 4137 2825 5762 3929 6238 3956 48
+ 187 3037 * 1627 564 812 1217 9615 2612 1849
+
+T 49 4420 * 5455 4174 * 3973 4514 4499 4383 4442 6558 3217 5634 4439 4223 3578 2483 3212 * 5577 49
+ 100 3894 * 1947 433 2019 409 9665 1845 1413
+
+V 50 3569 6566 3478 4478 6216 4468 5584 * 3526 4230 * 4394 2438 4637 3369 3720 5799 3682 * 6636 50
+ 79 4238 * 1521 618 1705 529 9673 1706 1272
+
+L 51 * * 6726 6468 4200 6862 5559 1949 4398 3049 5055 * 4896 5845 4978 6714 4507 2006 * 4249 51
+ 16 * 6519 * * 543 1673 9685 0 1271
+
+G 52 3368 * 6656 4386 6897 1119 6447 6217 3177 6223 * 5767 5050 6481 6718 4250 4834 4276 * 5697 52
+ 89 4679 5593 1626 565 0 * 9658 1460 1238
+
+T 53 3467 6317 4652 3147 3904 6833 6808 4299 3534 6906 6528 4306 4651 5151 4056 4169 2912 3428 5541 5500 53
+ 89 4628 5679 551 1656 803 1228 9661 1427 1245
+
+T 54 5156 6617 * 4597 3705 6874 3725 3204 4267 3189 5057 5715 6134 5540 4339 4960 3978 1945 * * 54
+ 159 3358 7164 1543 606 * 0 9633 2168 1350
+
+S 55 2920 * 5436 4019 6170 4581 4731 4688 3804 5079 6880 4977 5457 4203 3923 3244 3410 2897 6399 5583 55
+ 119 4561 4770 987 1013 0 * 9637 1460 1455
+
+G 56 4033 * 4481 3959 4939 3639 2830 3073 5399 4024 * 4885 5436 6560 3363 6652 5716 3497 4733 4253 56
+ 249 3609 3713 2718 238 1031 970 9667 2143 1501
+
+S 57 3689 6467 * 3736 4963 4983 4813 4885 4959 5323 * 5629 2876 3539 4148 2362 4878 3648 * 4688 57
+ 203 4522 3512 1856 466 169 3177 9529 1497 2457
+
+S 58 4730 6403 3861 4053 5642 3012 6536 4635 3451 4480 * 3421 5656 4058 3502 2862 3873 5456 * * 58
+ 85 4429 6528 3084 181 181 3081 9590 1725 2362
+
+F 59 3651 5567 3325 4940 2955 5694 3967 3972 6770 4748 5703 4163 * 6689 5717 5292 3602 6928 5281 2328 59
+ 308 2381 * 1798 489 975 1026 9687 3489 1222
+
+P 60 4175 6727 3748 3904 6924 3164 4816 * 5356 4452 5517 3780 2211 5768 4874 3152 4360 5471 * 5521 60
+ 190 3106 7083 2437 295 0 * 9722 2424 1023
+
+N 61 3362 * 2592 3526 5708 2915 5778 5238 4228 4236 * 3600 5574 5464 6727 3871 3817 4719 * 4862 61
+ 96 4146 6971 2047 400 0 * 9752 1863 1000
+
+N 62 3843 6263 3565 * 4876 4983 3531 6845 5627 4417 * 1763 4781 5124 4117 4606 4641 4916 6430 4019 62
+ 460 1873 * 957 1044 0 * 9886 5326 1021
+
+D 63 * * 188 5690 * 5437 6480 * * * * 4138 * * * * * * * 6408 63
+ 0 * * * * * * 9887 0 0
+
+Y 64 3066 6044 6968 * 4112 6935 6853 1660 * 2503 5065 * * * * 5559 * 2793 4710 4146 64
+ 0 * * * * * * 9887 0 0
+
+G 65 595 5731 5365 4593 * 3600 * * 7081 6893 3972 * 6480 5871 * 5382 7280 4936 * * 65
+ 0 * * * * * * 9887 0 0
+
+I 66 5425 * * * 4031 * * 2529 * 1154 5140 * * 6220 6442 * 7270 2404 4505 * 66
+ 0 * * * * * * 9887 0 0
+
+V 67 4433 6515 * * 4753 6972 6835 1791 * 1469 5836 * * * * 5393 * 2659 6126 5341 67
+ 0 * * * * * * 9887 0 0
+
+R 68 5859 * 4934 2291 6685 6899 6408 6978 2169 4186 * 6977 5738 4202 2475 3976 4700 5615 * 4405 68
+ 0 * * * * * * 9887 0 0
+
+Y 69 5099 * * 6835 3989 5718 * 3210 7013 1475 6030 * 3705 * * 5246 3890 2555 7213 4573 69
+ 17 6414 * 0 * * * 9887 1061 0
+
+T 70 3903 5765 2961 3130 6729 4912 * 4900 3667 7145 6515 3576 4046 4651 5034 2857 3663 4148 * 6480 70
+ 39 5220 * 2677 245 * * 9887 1355 0
+
+N 71 4736 * 3031 3353 * 4505 5926 6071 4033 5095 * 3244 3282 4741 3757 3028 3351 5297 * 6536 71
+ 77 5204 5350 336 2265 * * 9887 1379 0
+
+T 72 3197 * 4069 3363 * 3224 7007 5973 3497 5561 6703 4054 2519 5461 5839 3276 4116 4717 * 6590 72
+ 43 6703 5667 1412 680 1767 502 9858 1204 1393
+
+T 73 2959 * 4147 5596 4300 4501 * 3783 5198 3620 6693 3817 6131 5289 4119 4432 4779 2430 4910 4692 73
+ 56 5547 5918 1057 945 870 1143 9814 1419 1817
+
+I 74 4446 * 3949 3538 3993 5840 6046 4450 3854 4111 * 3901 3791 4868 5328 3882 2700 3120 * * 74
+ 142 3681 5984 2266 336 553 1652 9837 2348 1608
+
+P 75 3878 5997 5378 * 2748 4269 7148 3669 5413 3345 5317 7043 4162 4911 5793 4113 4467 2939 4226 4123 75
+ 133 4176 4937 1458 653 858 1158 9845 1862 1523
+
+K 76 4451 * 3727 4449 6822 4462 6762 5768 4879 6939 6916 2208 4288 7089 5171 1999 3286 7059 * 4721 76
+ 132 4550 4480 1432 668 1196 828 9773 1683 2161
+
+D 77 3885 * 2868 4244 5990 4426 5922 5838 4505 4932 6744 3450 2408 5649 6866 2887 3933 5126 * 5478 77
+ 264 3143 4207 2887 210 2057 397 9780 2827 2380
+
+G 78 3884 * 4047 4185 4557 4140 4354 * 4090 4820 5660 2759 5343 4372 3421 4080 3881 5735 * 3396 78
+ 127 5742 3932 720 1348 1312 744 9747 1311 2934
+
+T 79 5434 * 6736 6937 4796 6632 * 1981 5667 3486 4663 6807 4722 4895 5286 4677 3350 2081 6675 5493 79
+ 173 4865 3663 1800 489 2186 358 9721 1568 3227
+
+V 80 3152 * 5169 5802 6202 4080 5567 4228 3067 3074 * 3702 4954 4756 3898 4831 5810 3489 6394 3484 80
+ 650 2458 2468 2298 328 2136 372 9692 3693 3879
+
+G 81 3634 * 6539 4719 3770 4174 6413 4975 4430 4978 * 5408 2486 6142 4776 3057 3083 4473 5273 4092 81
+ 101 4544 5353 2515 277 933 1071 9437 1502 5219
+
+G 82 4308 * 5997 5275 4393 4929 * 2158 6562 2749 6248 5400 3200 6433 5243 5661 3104 3366 * 5192 82
+ 141 3566 6889 1235 798 2750 232 9770 2291 3555
+
+Q 83 3177 4190 4369 4651 6984 2741 6854 3712 4733 3429 5219 5255 3843 6085 4821 4290 4479 3381 * 6828 83
+ 54 * 4761 * * 2000 415 9769 0 3474
+
+D 84 4159 4784 3538 3829 5632 4834 * 5154 3905 2181 5521 4489 3574 4491 6397 4269 3629 4907 * 6957 84
+ 73 5192 5490 743 1313 821 1205 9733 1463 3350
+
+I 85 4685 * 6457 6978 4865 * * 2901 * 2466 5117 5476 2147 5327 4723 6024 5560 2354 * 5604 85
+ 315 4480 2723 1114 894 1171 847 9821 1535 2384
+
+T 86 3378 6721 4077 5167 5313 3911 * 6995 3844 3277 * 4762 3844 4151 3943 2814 3336 4532 * 5468 86
+ 211 4346 3523 1317 741 1023 977 9658 1634 3955
+
+S 87 3009 6816 3579 6901 4941 1797 * 5851 4593 3926 * 4003 5051 5158 * 2902 4560 6821 6441 6279 87
+ 118 4261 5250 1871 461 654 1456 9641 1985 3545
+
+A 88 4216 * 3637 4033 5237 4161 5999 4362 4499 4165 5332 5012 3856 4882 5636 3159 3704 3523 4530 4054 88
+ 88 4293 6964 1665 547 745 1310 9767 1628 2321
+
+A 89 3010 * 4238 3405 4859 3585 6951 6603 4015 5244 5338 4064 7022 5847 4948 3066 3545 3350 6595 4364 89
+ 142 3531 7111 624 1510 599 1556 9798 2601 1610
+
+N 90 2988 * 2834 3595 5464 4618 6017 4743 5086 4067 5784 3739 4096 5486 4461 3627 3821 4123 * 5848 90
+ 42 6145 6076 2479 285 572 1611 9876 1165 1231
+
+A 91 2729 * 5323 6833 5627 * 6649 3476 6425 3204 5300 5173 1740 5753 5631 4750 6520 3082 * 5801 91
+ 64 4812 7043 557 1643 493 1789 9885 1468 1283
+
+T 92 3433 5641 5061 3727 6282 5370 4379 6562 2902 3916 6808 4475 3737 3801 4248 3576 4510 3869 6422 5316 92
+ 41 5143 * 916 1089 879 1132 9877 1513 1119
+
+V 93 4101 * 4256 3723 * 5749 4756 3953 4663 2653 * 4841 2669 6213 6418 4958 3702 2720 6871 6908 93
+ 60 5763 5489 1387 695 737 1321 9854 1181 1159
+
+G 94 4258 * 3748 5160 * 713 * * 4759 * * 3201 * 4431 6192 5725 6577 * * * 94
+ 40 5176 * 2399 303 0 * 9878 1357 1421
+
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+I 130 4777 * 4871 * 4089 4813 6535 2281 4296 2466 4856 6561 * * 6939 4463 3324 3146 7085 3884 130
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+A 176 3239 * 5978 * 3445 * 4934 2626 * 3302 5637 6283 6439 5604 6108 4757 4643 2389 * 2807 176
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+Y 180 5694 * * * 2706 5692 * 4636 * 970 3986 * * 5318 5617 * * 5754 3435 4719 180
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+ 0 * * 0 * * * 4701 0 0
+
+//
+�HHsearch 1.5
+NAME 3dddac6f1a46a0d944548b4f8648c5d1
+FAM
+FILE 3dddac6f1a46a0d944548b4f8648c5d1
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:39:16 2013
+LENG 107 match states, 107 columns in multiple alignment
+FILT 107 out of 267 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCC
+CCCCCCC
+>ss_conf PSIPRED confidence values
+9989887655578779845785886568353345878887774533255456565566766101999975541467603657767765321347898756
+6888869
+>Consensus
+xxxxpxxxxxxxxxxxxVxFxHxxHxxxxCxxCHHxxxxxxxxxxCxxxxCHxxxxxxxxxxxxxxxAxHxkxxxxxxCxgCHxxxxxxxxxxxxgpxxC
+xxxxCHx
+>3dddac6f1a46a0d944548b4f8648c5d1
+APKAPADGLKMEATKQPVVLNHSTHKSVKCGDCHHPVNGKEDYRKCGTAGCHDSMDKKDKSAKGYYHVMHDKNTKFKSCVGCHVEVAGADAAKKKDLTGC
+KKSKCHE
+>gi|258404546|ref|YP_003197288.1| cytochrome c class III [Desulfohalobium retbaense DSM 5692]gi|257796773|gb|ACV67710.1| cytochrome c class III [Desulfohalobium retbaense DSM 5692]
+AQMPPSNityeAPEIMPRLGPSHFSHDSHYAHDCMTCHHMWDGFSEIKSCSAEGCHDQRGT--MkmEGSTIYYAFHKKSSQAS-CLGCHMQL--KKAGEP
+TGPIGC--TTCHE
+>gi|224371554|ref|YP_002605718.1| TmcA2 [Desulfobacterium autotrophicum HRM2]gi|223694271|gb|ACN17554.1| TmcA2 [Desulfobacterium autotrophicum HRM2]
+------------RQRSAVFFPHGLHMDnLECLDCHHVY-EGGkNlqdedelyednpDIRCQ--DCHNTDAS-----IDTTKAFHH-----Q-CMGCHIKS
+--TKEQaKIKTPEMC--GDCHT
+>gi|95929129|ref|ZP_01311874.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]gi|95135030|gb|EAT16684.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
+----KGKSLTFAgSSMGAVTFDGTLHNNAaeKgCRDCHNP-----DVF-----------PKM-KQgtvK----ITMAQIYAGKQ-CGICHDG---GR---
+AFAAKgHC--AKCHK
+>gi|224371107|ref|YP_002605271.1| hypothetical protein HRM2_40490 [Desulfobacterium autotrophicum HRM2]gi|223693824|gb|ACN17107.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2]
+-------------KKGIVQFTHQKHVadyKIGCGECHHGDDGSpladmkagDDAVGCA--ECHAEPGTApkskDKKLSdSEKLEYHAEALHEN-CITCHK
+AYNKEN-NTKDAPASC--AKCHP
+>gi|220918631|ref|YP_002493935.1| hypothetical protein A2cp1_3539 [Anaeromyxobacter dehalogenans 2CP-1]gi|219956485|gb|ACL66869.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-1]
+------------AEQPAVEFTHEAHimAEVACLDCHSGIDKATRLepkrhvsVSCS--DCHDDARGQVKvperVKqvrFTFSHQDHLAKV-KD-CKTCHQ
+ALPEpGDKEIKaPPMAAC--TSCHN
+>gi|320449434|ref|YP_004201530.1| chaperone protein HtpG [Thermus scotoductus SA-01]gi|320149603|gb|ADW20981.1| chaperone protein HtpG [Thermus scotoductus SA-01]
+-------------VEQPVPFSHAFHAGglgLSCRYCHSSVERAayaglPPTEACM--TCHTFIKPDSpnlalvrrswetgeplrwnrvinlPDFVYFNHG
+AHV-AKGVG-CAECHGRVDqmaVVRQPQAFTMKFC--LDCH-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 428 * 3374 * * 2644 * * * * * * * * * * * * * * 1
+ 148 3356 * 2585 263 * * 3302 1025 0
+
+P 2 4052 * * * * * * * * * 2873 * 2070 1760 * * * 2279 * 3975 2
+ 85 * 4127 * * * * 3833 0 0
+
+K 3 3257 * 3056 1648 * * * * 2511 * 3983 4338 * * * * 3322 3882 * * 3
+ 0 * * * * * 0 4013 0 1009
+
+A 4 1050 * * * * * * 4071 * * * 4080 4139 3243 * * * 2083 * * 4
+ 0 * * * * * 0 4191 0 1009
+
+P 5 4904 * 3740 * * 4044 * 3448 3794 * * * 583 * * * * * * * 5
+ 0 * * 1585 585 0 * 4660 1009 1009
+
+A 6 2605 4673 2678 3844 * 2680 4798 5497 3860 * * 4224 4862 3230 * 3716 5871 * * * 6
+ 0 * * * * * * 4967 0 0
+
+D 7 3401 * 1681 3776 * 4449 * * 1831 4798 * 3950 * * 4918 4941 5189 * * * 7
+ 443 2112 4918 2138 372 * * 4967 1486 0
+
+G 8 4043 * 4878 5231 * 3198 * * 3304 * * 5206 1523 * 4820 4395 3551 2999 * * 8
+ 0 * * * * 0 * 5513 0 1009
+
+L 9 3176 * 5274 4063 * * * 2656 5908 2347 4242 3619 3823 * 5683 5823 5267 3557 5308 4220 9
+ 0 * * * * * * 5602 0 0
+
+K 10 5335 * 4598 1460 * 3674 * 6102 3487 5277 * * 3082 * 5547 5726 2691 4345 * * 10
+ 161 3527 5726 1198 826 * * 5623 1213 0
+
+M 11 4527 * 5845 4373 2593 * * 2851 4085 2690 2317 5537 5705 * * * 5620 4466 5955 4333 11
+ 113 5086 4436 440 1928 814 1213 5240 1116 1066
+
+E 12 3800 * 3295 2219 * 3648 4917 * 2186 * 5002 3284 3910 6027 * 5945 4413 * * * 12
+ 320 2329 * 1519 619 * 0 5179 1706 1149
+
+A 13 2393 6836 5884 4179 * 2597 6751 * 4252 6357 6195 2508 4447 5124 4625 3342 4380 5181 * 6540 13
+ 61 * 4584 * * 446 1910 6151 0 1149
+
+T 14 4517 * * 4008 * 5123 * * 2017 3443 6583 6302 4139 4183 4241 3573 2449 5147 4890 6711 14
+ 99 4372 5797 979 1021 698 1383 6323 1231 1216
+
+K 15 5584 * 4937 5050 4378 3817 5820 4698 2442 3923 2744 4859 5707 3948 3573 5172 7045 5483 * 3613 15
+ 0 * * 2000 415 840 1181 6463 1042 1232
+
+Q 16 3296 * 5087 5146 * 1540 * * 3218 5033 4849 6509 2786 3717 * 4736 4583 * * 6303 16
+ 0 * * * * * 0 6516 0 1066
+
+P 17 3388 * 3983 4456 6264 6384 * 4377 2886 6080 * 4713 1427 5126 5397 5585 3832 6955 * 6509 17
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+
+V 18 3923 * 6618 * 5241 * * 4796 5724 5010 * * 6182 * * 4971 * 385 * * 18
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+
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+K 40 3564 6094 3288 2830 6019 2440 * * 2195 5689 * 6218 4575 6094 5069 4134 4328 * * 6190 40
+ 595 1965 3608 2412 300 1951 432 6196 2160 2686
+
+E 41 3933 * 3340 2933 * 2065 * * 5194 * 5439 4796 3093 4650 7542 3309 3652 6803 6014 6358 41
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+K 63 5066 * 4026 4379 4499 6269 5054 3546 3773 3241 4322 4563 2934 * 5335 3189 4200 3367 * * 63
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+ 129 * 3543 * * 3226 163 6000 0 3220
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+K 75 2921 5173 3005 2848 5408 2572 4791 5610 3531 6274 3801 * 3851 5476 * * 5705 * * 4429 75
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+K 77 4868 * 6248 5457 * 4541 5381 * 3632 4409 6579 3371 4772 2894 4493 1693 4245 5901 6047 5739 77
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+
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+
+K 93 * * 4557 3196 * 5024 5140 4947 1552 2168 * * 5439 4477 4124 * 4887 * 4865 * 93
+ 196 5140 3338 0 * 1032 969 5285 1000 3883
+
+K 94 2510 * * 5900 * 3348 * 5778 1397 * * 4163 3385 4578 5759 4620 4081 * * * 94
+ 169 3532 5361 486 1805 757 1292 5755 1323 2811
+
+K 95 2843 * 3972 5863 3150 5530 * 5898 2437 5142 5295 3531 3502 * 5636 5091 2819 5366 * * 95
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+
+D 96 2759 * 4280 6560 5949 1141 * 5969 3723 * 6522 5250 3894 6433 * 4389 4517 5544 * * 96
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+L 97 5017 * * * 5160 5732 * 5515 * 3120 3402 6149 718 6137 * 5642 * 4857 * * 97
+ 0 * * * * 0 * 6147 0 1009
+
+T 98 3287 * 5890 5373 * * * 4215 2498 3247 * 6681 6867 6763 6544 5217 1888 2517 * 6590 98
+ 126 3584 * 0 * * * 6158 1539 0
+
+G 99 2991 * 4427 4531 5586 1965 4912 * 3364 5657 5653 4613 6054 * 4364 2825 3443 * * * 99
+ 11 7011 * 0 * * * 6158 1000 0
+
+C 100 * 0 * * * * * * * * * * * * * * * * * * 100
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+K 101 1714 * * * * * * * 2211 3099 * * * * * 3008 2070 * * * 101
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+
+K 102 * * * * * 2996 * * 1680 * * 1776 * 2916 * * 2854 * * * 102
+ 205 * 2916 * * 0 * 2930 0 5091
+
+S 103 3057 * 6861 5613 6038 2906 6132 * 3144 4827 6532 3051 6412 5426 4551 2693 2590 6689 * * 103
+ 0 * * * * 0 * 6127 0 1042
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+K 104 3789 * 2660 2751 * 2911 * * 2973 7057 * 6704 4331 4066 4463 3095 4400 5358 * * 104
+ 35 5371 * 0 * * * 6158 1093 0
+
+C 105 * 0 * * * * * * * * * * * * * * * * * * 105
+ 0 * * * * * * 6158 0 0
+
+H 106 * * * * * * 0 * * * * * * * * * * * * * 106
+ 0 * * * * * * 6158 0 0
+
+E 107 4384 * 5773 3519 * 6552 6193 6426 1881 * * 4650 2526 3971 5040 4707 2962 3944 * * 107
+ 0 * * 0 * * * 5957 0 0
+
+//
+�HHsearch 1.5
+NAME 3e7b90809bd446a538f9eb1a1ca0e551
+FAM
+FILE 3e7b90809bd446a538f9eb1a1ca0e551
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:58:24 2013
+LENG 153 match states, 153 columns in multiple alignment
+FILT 118 out of 1086 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
+HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9699999999999999985388899999999999894377668002466768988609888899999999999999815236999999999888872999
+89999999999999998765369999999999999999999999998758899
+>Consensus
+xltxxexxxixxsWxxvxxxxxxxgxxxfxxlFxxxPxxxxxFxxfxxxxxxxxlxxxxxxxxhxxxvxxxlxxxixxldxxxxxlxxlgxxHxxxxgvx
+xxxfxxxxxxlxxxlxxxlgxxxtxxxxxAWxxxxxxixxxxxxxxxxxxxxx
+>3e7b90809bd446a538f9eb1a1ca0e551
+VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIP
+IKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
+>gi|194015055|ref|ZP_03053672.1| oxidoreductase, FAD-binding domain protein [Bacillus pumilus ATCC 7061]gi|194014081|gb|EDW23646.1| oxidoreductase, FAD-binding domain protein [Bacillus pumilus ATCC 7061]
+MLSKDQMNAIKQSAPLLKAEGTKLVTVFYQNMIRQHPELLNQFN----Q-------TNLMNGSQPEALAVTLYQAALHIDRLEellPVVKQIAHKHVS-V
+MVKKEQYPIVGYHLIEAMKEVFGLTEKDDTLLAWKAAYDIIANIFITieaeMMEVnvkqpGGWAD
+>gi|297697626|ref|XP_002825953.1| PREDICTED: hemoglobin subunit alpha-like [Pongo abelii]
+-----------------------------------------------------------------------------------------GQRDGRDFQWD
+PVKIKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR------
+>gi|108797450|ref|YP_637647.1| oxidoreductase FAD-binding region [Mycobacterium sp. MCS]gi|119866535|ref|YP_936487.1| oxidoreductase FAD-binding subunit [Mycobacterium sp. KMS]gi|108767869|gb|ABG06591.1| Oxidoreductase FAD-binding region [Mycobacterium sp. MCS]gi|119692624|gb|ABL89697.1| Oxidoreductase FAD-binding domain protein [Mycobacterium sp. KMS]
+-----ALAVLRDAVDP-RRGSDPLIADFYTRWFAADLSVRDLFPP--DM------------ARQRTAFAEAMTWLFGELiaQraeEPVAFLAQLGRDHR-
+KYGVVQRHYDTMGDALYAALRSGLADQWSDRVAEAAHDAVALATGVMRGA--------
+>gi|198419488|ref|XP_002119301.1| PREDICTED: hypothetical protein [Ciona intestinalis]
+PLTEIEIEGVQESWEKVSSgGPKTTGLILMEKLFNTYPASIAVFSHLGIPSKPdgaitvSDLASIGGVSNHAVSLASRIGKLVGLLNNeteLKESSTEVG
+RIHVK-YGVTSEHVDLLGSVLLSVISENQGLSNTSELIGWWSKTWNIIGNYVKTGL-------
+>gi|119474700|ref|ZP_01615053.1| hypothetical protein GP2143_12811 [marine gamma proteobacterium HTCC2143]gi|119450903|gb|EAW32136.1| hypothetical protein GP2143_12811 [marine gamma proteobacterium HTCC2143]
+--DQ-----IVSCLEQVGDRCKDPTALVYERLFSANPEMKPLFI----M-D-----GNDAVKGQM--LFQVLDGIIDFVGDRRYaetLFLSELINHDI-I
+GVPPRVFSTFFRTIMETFRDIMGADWTAEFDQAWAQLLSDLDEMIREKAEVA----
+>gi|341887822|gb|EGT43757.1| CBN-GLB-25 protein [Caenorhabditis brenneri]
+----RDFFTLKNWWKSVDRKRVEASTYMFSRYLNDFPENKAFYAKLKNVNAqtVDMNCSDPGFEAMAAQYLKVFDDVITAveekPGDVQSacdRLSAVGK
+MHRAKvSGagMESSMFQNMEEPFIQMVKYILQDRFNEKAEMLYRKFFQFCLKYLLEGF-------
+>gi|339235297|ref|XP_003379203.1| putative WAP-type 'four-disulfide core' [Trichinella spiralis]gi|316978179|gb|EFV61192.1| putative WAP-type 'four-disulfide core' [Trichinella spiralis]
+-LSVYDKRLIEESWCALR-DKDEVAKQIFLRVLTSNEKIRTIFDLH--TCPDDELEENSAFQRHVKSLSLFLSICADSlsvsPDRLVSIARSIGEKHVNF
+RWvsFDAEYWLLMKCAMVEVISSKQRPKISHLVNTAWNSLLSFVIFEIKHSFLEA----
+>gi|294979326|pdb|2WTG|A Chain A, High Resolution 3d Structure Of C.Elegans Globin-Like Protein Glb-1gi|294979327|pdb|2WTH|A Chain A, Low Resolution 3d Structure Of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Formgi|294979328|pdb|2WTH|B Chain B, Low Resolution 3d Structure Of C.Elegans Globin-Like Protein (Glb-1): P3121 Crystal Form
+--------------------NIENGNAFYRYFFTNFPDLRVYFKGAEKY-TADDVKKSERFDKQGQRILLAChllANVYTNEEVFKGYVRETINRHR-IY
+KMDPALWMAFFTVFTGYLESVG--SLNDQQKAAWMA--------------------
+>gi|194745446|ref|XP_001955199.1| GF16359 [Drosophila ananassae]gi|190628236|gb|EDV43760.1| GF16359 [Drosophila ananassae]
+-FTLSERLALRQAWNIVRPFTRRYGQEIFFNYLNDAYLRISKFKHTKGN-------YLHVLHNHFRGFLCFIGSLIEEQDPvmFQLMLNDNNMTHSR-CK
+VGAAFILELAQAMTDYILKVFEKVSSASLESGFRKIVD-----------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 4865 4754 4858 * * 3862 3292 * * 4864 3522 4800 1479 4967 * 2877 * 4673 * * 1
+ 102 3874 * 1671 544 * * 6449 1270 0
+
+L 2 6390 * * * 2775 6389 * 5187 * 682 3753 * 6579 * * * 6479 3809 6378 * 2
+ 0 * * * * * * 8204 0 0
+
+S 3 6541 * 4492 * * * * * * * 6481 4585 * 6363 * 1359 1102 5361 * * 3
+ 0 * * * * * * 8310 0 0
+
+E 4 2557 6360 3279 2616 7155 3864 6687 5062 4276 5145 * 5648 2532 5497 6324 3964 4639 6356 * 6304 4
+ 18 * 6335 * * * * 8407 0 0
+
+G 5 2722 * 2843 2457 6074 5096 5716 5449 2938 6621 * 5674 5400 4590 3271 3661 5582 * * 6378 5
+ 0 * * * * * 0 8452 0 1024
+
+E 6 6454 * 2184 1467 * * 6212 6708 5569 * 6568 6362 * 1642 * * 5690 * * * 6
+ 0 * * * * * 0 8463 0 1024
+
+W 7 5154 6134 * 5125 6048 * 6292 2129 2183 4193 6623 * * 6425 2330 * 4822 3095 6575 6147 7
+ 0 * * * * * 0 8612 0 1024
+
+Q 8 2803 * 3879 2981 4661 6930 4651 5002 2408 4909 * 5445 6434 3338 3494 4510 5008 7035 * 5882 8
+ 0 * * * * * 0 8629 0 1024
+
+L 9 2405 * 4117 4868 6693 5529 5699 3435 * 1432 6132 4374 * 5487 6950 * 3746 4707 * * 9
+ 0 * * * * 0 * 8649 0 1024
+
+V 10 5091 * * * * * * 1496 * 1888 4857 * * * * * 5622 1780 * * 10
+ 0 * * * * * * 8761 0 0
+
+L 11 4500 * * 4806 * 6751 5076 4926 2433 3991 * 5755 * 2135 1916 * 5171 4028 * * 11
+ 16 * 6532 * * * * 8761 0 0
+
+H 12 3400 * 3547 2937 * 4959 5215 * 2998 6826 * 3621 * 3138 3676 2631 4387 * * 6176 12
+ 0 * * * * * 0 8740 0 1020
+
+V 13 3838 5621 4678 * 6505 * 6310 4845 * 5286 6826 4975 * * * 1069 2183 4834 6134 * 13
+ 0 * * * * * 0 8740 0 1020
+
+W 14 * * * * 3514 6928 * 5163 * 4954 6549 * * * * * * 4956 338 6606 14
+ 0 * * * * 0 * 8740 0 1020
+
+A 15 2719 5190 3530 2903 6325 3891 * * 3624 6943 * 3074 4001 4973 3719 3319 4568 * * * 15
+ 0 * * * * * * 8761 0 0
+
+K 16 3505 * 6551 4948 4749 4499 * 3823 2666 3586 4723 4454 5815 3907 3481 4121 4160 3252 * * 16
+ 33 5479 * 1000 1000 * * 8761 1169 0
+
+V 17 3681 * 6528 6932 5178 * * 2136 * 2225 4439 6341 6282 7064 6538 * 5736 1618 * * 17
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+NAME 3efa288e683aab27e0db9e3baf300765
+FAM
+FILE 3efa288e683aab27e0db9e3baf300765
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:25:08 2013
+LENG 219 match states, 219 columns in multiple alignment
+FILT 133 out of 1330 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEECCCEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEECCHHHCCEEEEEEECCCC
+CEEEEEEEEEEEECCCCEEEEECCCCEEEECCCEEEEEEEEECCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCEEEEEEEEECCCCHHHCCEEEEE
+EECCCCCCCEEEEEECCCC
+>ss_conf PSIPRED confidence values
+9299937972899789979999997078766678878999990899973799970454466778617875047657999950565549589999853888
+4241358999971132116896288517861982999999816779986899998998977775432036863898288899999824887769389999
+9968888228999845779
+>Consensus
+xxxvxxxxxxxxvxxGxxvxLxCxxxxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxLxixxxxxxDxgxYxCxvxxxxx
+xxxxxxxxlxvxxxxxxpxvxxxxxxxxxxxxxxxxlxCxxxxxxpxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxxdxgxyxCx
+vxxxxxxxxxxxxxxxxxx
+>3efa288e683aab27e0db9e3baf300765
+DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVP
+RTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGKERQNGVLNSWTDQNSKDSTYSMSSTLTLTKDEYERHNSYTCE
+ATHKTSTSPIVKSFNRNEC
+>gi|34536129|dbj|BAC87548.1| unnamed protein product [Homo sapiens]
+--------------DNSPVVLACLITGYH--PT-SVTVTWYMGTQSQP-----------QRTFPEIQRRDSYYMtSSQLSTPLQQW-RQGEYKCVVQHTA
+SK----SKKE------I---------------------------FR-------WPESPKAQASSV-PTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKE
+KEKE----------------
+>gi|118129764|ref|XP_001233426.1| PREDICTED: hypothetical protein [Gallus gallus]
+--KIMPPNKPVVGVIGKGVVLPCQLEAKT----VSERLlvQWif--TGKSPNigvTTYDGINTLnpvREEKTYQGRthfFQSEVNRGNLSLHLKNVMLSD
+KGKYICFV-SLENWYDEVVVDLDVAAQSE-eSEVFL-----DGHMGQGIGLTCKSQGWFPQP-EVIWLdSKGQTRKE---KVVTqSLQTSSGLFDVVSSM
+TLEPGS---DMEVSCRIVNDLLNTACES-------
+>gi|242010303|ref|XP_002425908.1| beat protein, putative [Pediculus humanus corporis]gi|212509884|gb|EEB13170.1| beat protein, putative [Pediculus humanus corporis]
+---------PKIIDVRESGILTCEFDLENGK---LYSVKWYK----NDLEFFRFMPNGNPIvqifKVDG-INLTdKDCNMTTVVLNRLEFTTSGLYTCEV
+STegPYFKTVQTSSNMTVLGiPEKNPTITG--IENIYNVGDYVRGNCTSDLSYPVS-NIDWYINDNKVESWQLEKYPVIIFNDKMIISTLGISF------
+---------------------------
+>gi|185135274|ref|NP_001118211.1| macrophage colony stimulating factor receptor-like [Oncorhynchus mykiss]gi|34392449|dbj|BAC82552.1| macrophage colony stimulating factor receptor [Oncorhynchus mykiss]
+--SVLIEVDGYVSIVGEELRIPCITSNPNH----FYNVTWKHSSLKA------------LNFFQTVIQDKQVHITSTVTIPAVTMSDTGNFTCTAMNE--
+--AGASRSTIYLEVVDEPYIRFIPRlspnlyqNGSLVNvkeGENLEISILIEAY-PQIKKHWWDVPMSHSQNIS--THgDTWTA-QDNNRYESSLLLHRV
+RSEERGQYTLHTRSTRLNSSITFNI-----
+>gi|327265502|ref|XP_003217547.1| PREDICTED: macrophage colony-stimulating factor 1 receptor-like [Anolis carolinensis]
+--KIGLIVKGFIIFYYIFTYFFVTAHCIVL----AFGSY-----CKC------------HIKLELSFK-----------------------ICILTK---
+-----KQSALIKTINTPISVTIGAKDNVRIQGEPFNISCNV-SY-PSFGyQIRWDYPSTANVSLE-SRESFDDS-SESYNTQHILSIPAVQLNDSGKYTC
+FASTNARVSNSSANL-----
+>gi|170037717|ref|XP_001846702.1| fasciclin [Culex quinquefasciatus]gi|167881048|gb|EDS44431.1| fasciclin [Culex quinquefasciatus]
+GLTVRDD-----TEGd-VSDSRFTVA---------AAATPSTtFTLPSSSQQVALTPGQPAANGL-QYFGEGYQKGQCGV--tiDRITTAHNGQVKCSVF
+vDGLSAE----glIDVVVAVSPSQPTIQLEPETTYFEAGKQITAHCV---ttgG-nPDP-QLAWFLE-nDPIYDG----Vdk-qqdFEQDGTTGTAL--T
+L-rRIINGNDN-gKRLICQARHLAYpEGSSQTSL-----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+R 216 4491 * * * 3686 * 4436 * 2560 2588 3616 * 3744 4407 2333 * 4285 * 4549 * 216
+ 0 * * * * * * 7204 0 0
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+N 217 * * 4355 3528 * 2981 * * 3501 3591 * 2580 3492 * * 1928 * 4396 * * 217
+ 0 * * * * * * 7190 0 0
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+E 218 * * 3516 1173 * * * * 3417 * * * * * * 3463 2444 3307 * * 218
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+C 219 * 389 * * * * * * * * * * * * * 2080 * * * * 219
+ 0 * * 0 * * * 2856 0 0
+
+//
+�HHsearch 1.5
+NAME 409d1b78279b50a32005612fe5003760
+FAM
+FILE 409d1b78279b50a32005612fe5003760
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:03:42 2013
+LENG 200 match states, 200 columns in multiple alignment
+FILT 196 out of 1298 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCEEEECCCCEEECCCCEEEEEECCCCCCEEEEEECCEECCCCCCCCCCCCCCCCCEEEECCCCHHHCEEEEEEEEECCCCCCCCCCCCCEEEE
+EEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEC
+>ss_conf PSIPRED confidence values
+9887699999958998662799099999788998589999899375431014310256655479984467778856999999477887531127719999
+9820478779978987301698299999837998579999899104542231231278630089975668897999999969998405578888999969
+>Consensus
+xxxxxxxPxixxxpxxxvxxGxxVtLxCxxxxxxxxxxxxkxgxxxxxxxxxxxxxxxxxxxxlxixxvxxxdsGxYxCxaxxxxxxxxxxxxSxxxxlx
+VxxxxxxpxlxxxpxxxvxxGxxvtLxCxxxxxxxxxxwxkxgxxxxxxxxxxxxxxxxxxxxlxixxvxxxGxYxCxaxxxxxxxxxsxxSdxxxlxVx
+>409d1b78279b50a32005612fe5003760
+HEGVHRKPSLLAHPGPLVKSEETVILQCWSDVRFEHFLLHREGKYKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIV
+ITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPLLVSVT
+>gi|148699261|gb|EDL31208.1| leukocyte-associated Ig-like receptor 1, isoform CRA_d [Mus musculus]
+QLCSLPDITIFPNSSLMISQGTFVTVVCSYSDKHDLYnmvRLEKDGSTFME----KSTEPYKTEDEFEIGPVNETITGHYSC---IYSKGITWSERSKTL
+ELKVI-----------------------------------------------------------------------------------------------
+---
+>gi|297701545|ref|XP_002827772.1| PREDICTED: platelet endothelial cell adhesion molecule-like [Pongo abelii]
+-----------SLPDWTVQNGKNLTLQCFADVSTtshvkpqHQMLFYKDDVLFYN------ISSMKSTESYFIPEVRIYDSGTYKCTVIVN----NKEKT
+TSEYQVLVEG-VPNPRVTLDKK-EAIQGGVVRVNCSVPEEKapIYFTIEKLELNkKMAKQ----KREKASRDqNFVIleFPVEEQdrvLSFRCQARII--
+----------------
+>gi|7650326|gb|AAF65994.1|AF226640_1 pregnancy-specific glycoprotein 70 [Papio hamadryas]
+-----AQVMIEAQPTK-VSEGKDVlLPVRNLPQEVAAYIWYKGQIMDF-HQFItaytidteriifGAAYSGRetvySNGSLLIRNVTKNDTGSYTVKIR-
+-KPAEETKGVTVHFTL--YLETPKPYISSSNLNPREGTETVILSCDPETQDVSYLWWINGQSLPISRP-WQLSE--NNRILMLYGVTKdiAGPYECEMK-
+--NP-VSSSRSDPVTLNL-
+>gi|332031157|gb|EGI70734.1| Tyrosine-protein kinase-like 7 [Acromyrmex echinatior]
+----------QRERVGlAMRGKKRLRVPCRSTAISArLFAAvlgDVDDAPF---LQAPSTT---dDDvereeigsggcgdrlSRPSLLSFDVTaLYSDFL
+CRSTRRN---lVEKRRNVDGKKSFGiseAivQLQQPKLP----STIHVDNEIELRCHVDGSGDmKYEWFKNTVSVA--K---SDRVEIKKKKLHIHRAIP
+edSGMYTCVA---------------------
+>gi|213982747|ref|NP_001135545.1| v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog [Xenopus (Silurana) tropicalis]gi|195539639|gb|AAI68021.1| Unknown (protein for MGC:185004) [Xenopus (Silurana) tropicalis]
+-----AVPKINEgQDRFTIKVGERFQLICRDAQLVKWTFqKsglvKKPRDVQ------SR-SYNKSEtdQILFIGKADLKHVGRYTCTNTE------TY-
+ENTSISLFVKDP-ARPFLDVPF-IDVIEGSDAVGMCFPSDPDiVDIAIEKCDGSPLAEDFT---FTTDIEAGITIKMVQVsfDGCYVCTGNQSG------
+-----------
+>gi|281371402|ref|NP_001163795.1| carcinoembryonic antigen-related cell adhesion molecule 20 [Rattus norvegicus]
+---SLAKPILTVRQRVVTEQRDMADFYCATNAV--NATIHWVFNNS-LLVLNERMKLSADNKNLTVLVVQREDSGSYLCEVQS----GFEVGRSDDTLLE
+VNYGPDPVSIKLDSgvatGDVveVMEGNTVNF-wVETQsypaPTYTWYLPT--DS---IQP---------PpiTGQLTIPAISreQEGMYRCLVS-----
+---------------
+>gi|157888749|emb|CAP09304.1| novel immunoglobulin domain containg protein [Danio rerio]
+----TAPPVLTETSPPEVevFVGRSLTLKCAAQGnPRPTITWSKDGAPIKPQHK-----VKMVNGSVSFHAVSREAAGQYQCYTSNSE-----GNATHVT
+RLKIIG---PPVIIIPPSdTVLNMSQDAKLKCQAEADppNMTYVWQRQGVDIYhidsLKSRIKVIVDG----TLLISRLAPedSGNYTCMPT--N--GLP
+VSPSASAVL---
+>gi|312385976|gb|EFR30357.1| hypothetical protein AND_00104 [Anopheles darlingi]
+----------------YYKDGSEVFITCSINCtDPFNVIWLHDNREIKNSADFEYLND--GDIyTLHIAEIFPEDAGTYTCEAF-NK----GGESFSSCT
+ISVLapeDQKEKATFAKFPASLsVLDGAKAVFSCETY-ePPSKLQWYKDGEPI--Ne-SSnrYRFVKKDNKYTFSVAKCSFedIGQYQVR----------
+------------
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
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+G 158 4596 * 5970 3482 4855 1841 5618 * 5060 4461 5108 4050 4378 3951 6221 3772 3970 4498 * 4411 158
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+
+T 159 4476 * 3183 3277 * 2913 * 4493 4376 5840 6832 3996 6546 3499 4151 3133 3717 4394 5346 6659 159
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+ 28 7203 6368 2826 219 689 1397 9602 1269 2686
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+ 10 7230 * 4051 90 1024 976 9658 1101 1833
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+F 164 7458 * * * 1901 * 6272 3720 * 1058 5954 * 6750 7708 * 6596 5865 5840 5723 3982 164
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+H 171 3859 * 2931 4870 4460 6346 2683 6524 4019 4033 5955 5939 3078 4180 3483 4109 5607 5284 7971 6054 171
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+ 13 6795 * 0 * 0 * 9682 1183 1011
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+P 185 4503 5798 3896 5767 * 5493 * * 5830 6011 * 5023 1092 4710 2955 3803 * 4654 5754 * 185
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+E 187 3296 5796 6649 3707 3582 4092 * 3292 5656 2247 * 5872 * 5594 5140 3654 6487 3276 5685 4664 187
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+W 188 4436 * 5750 5566 5751 3238 5464 4189 * 5859 * 4317 4653 4217 5675 2914 3818 4235 2306 3780 188
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+S 189 5032 * 4189 * * 3932 * * 4222 6122 * * * 5897 4805 623 4512 4815 * * 189
+ 0 * * * * 1040 961 8054 0 1832
+
+N 190 3408 * * 2006 4761 4408 4303 * 3324 4855 * 5887 3505 3329 3871 3598 5900 * * 6012 190
+ 24 * 5948 * * 391 2073 8113 0 1387
+
+S 191 5184 * 4779 3766 * * 6256 4786 4804 3066 * 5899 2276 4925 2220 4350 3959 4919 * 4618 191
+ 0 * * * * 0 * 8147 0 1118
+
+S 192 * * * * * 5878 * * * 5561 * * * * 4849 133 6053 * * * 192
+ 0 * * * * * * 8173 0 0
+
+D 193 4040 * 1140 3304 * * 4836 * 4357 * * 2650 5149 5650 * 4553 5938 4883 * * 193
+ 22 6053 * 0 * * * 8173 1036 0
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+P 194 4184 * * 5046 5874 * 4882 4257 6037 6299 5011 4466 1118 4564 * 4457 3479 3858 * * 194
+ 0 * * * * * * 8173 0 0
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+L 195 3390 * * 5711 6233 * * 2781 4939 1496 * * * * * * 5858 1634 * * 195
+ 0 * * * * * * 8142 0 0
+
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+ 0 * * * * * * 7964 0 0
+
+V 197 * * * * * * * 1576 * 956 * * * * * * 5754 2935 * * 197
+ 16 * 6541 * * * * 7937 0 0
+
+S 198 5655 * 5085 4686 * * 4855 3586 3643 * 5464 3930 * 4162 3704 3354 2418 2579 4619 * 198
+ 0 * * * * * 0 7866 0 1016
+
+V 199 5565 * * * 5767 * * 2389 * 4395 5427 * * * * * * 517 * * 199
+ 0 * * * * 0 * 7841 0 1016
+
+T 200 3191 * * 3091 * * * 4033 * * * * * * * 2546 887 * * * 200
+ 0 * * 0 * * * 5434 0 0
+
+//
+�HHsearch 1.5
+NAME 4162710e327474bbbd96cdac5a602313
+FAM
+FILE 4162710e327474bbbd96cdac5a602313
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:20:50 2013
+LENG 159 match states, 159 columns in multiple alignment
+FILT 160 out of 1038 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHCCCCCEEEECCHHHH
+HHHHHHCCEEEEEEEEEEECCCCCCCCCCCHHCEEEEEEEECCCCCCCCCEEEEEEEEC
+>ss_conf PSIPRED confidence values
+9999999968984847998786587999999997439879990776762865579996999979998899979989999999986079969999889999
+99997669999999637505761279888013299998860245678965899999979
+>Consensus
+mixxxxAxsxdGxIgxxgxlxWxxxxdxxxfxxxtxxxxvlmGrxTyexxxxxxxxxxxxVvSxxxxxxxxxxxxxxxxxxlxxxxxxxxixvxGGxxlx
+xxxlxliDelxltxxpxxxxGxxxfpxxxxxxxxlxxxxxxxxxxxxxxxxxxxxyxrx
+>4162710e327474bbbd96cdac5a602313
+MISLIAALAVDRVIGMENAMPWNLPACLAWFKRNTLDKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVY
+EQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
+>gi|2506058|dbj|BAA22616.1| fusion protein, composed of HCV p21 (NS2), N-terminal region of HCV p70 (NS3) and TAX of HTLV-I [synthetic construct]
+---IITSLTgrdknqVDGEVQVLSTATQSFLAtcvnGVCWTVYHGAGSKTLAGPKgpitqmytnvDQDLVGWPAPPGARSMTPCTCGSSDLYLVTRHADV
+iPVRRRGDSRGSLLsprpvsyLKGSAGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFIP--VESMETTMRSPVFTDNSSLVA------
+>gi|330723554|gb|AEC45924.1| dihydrofolate reductase [Mycoplasma hyorhinis MCLD]
+MIISILAMGKNNLIGKGDDLPWYVKEDFDFYREQTKHHDILVGKNTFFTLPKSLQKWSKIYIVSddkNFNYEnENVKTINNFSNLIKEYQNhpSKHLFVS
+GGYTLYKSIINKCDQLIISFIKGEHSGDIFLNELKWEKFEEISSKDK-------GKFIVKKYKK-
+>gi|158316784|ref|YP_001509292.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]gi|158112189|gb|ABW14386.1| bifunctional deaminase-reductase domain protein [Frankia sp. EAN1pec]
+-LVYFVASTVDGFVaGPDGADptgpdGFWPvPQDyvehlAtEYPETLpgparaalgvtaagIHFDTVLEGRRSYEVglrvgLTNAFPHLRHLVFSRTLTV
+SpdPGVELVAdDPVATVRELKrqDGKDVWLVGGGELAGALYQEIDELVVKLGPLTLgTGIPLFSrtAAFDpRIWVLADHSVLK----SG--AVFLTYRR-
+>gi|258650872|ref|YP_003200028.1| riboflavin biosynthesis protein [Nakamurella multipartita DSM 44233]gi|258554097|gb|ACV77039.1| putative riboflavin biosynthesis protein [Nakamurella multipartita DSM 44233]
+-VVMYSSVSVDGFIAdENDQpgplFDWLVSgdvplddsgalkvsqTSYDYVRPYWDeIGVTVVGRHVFDLTDgwdgQPPSGIDhVVVVTHRPAPEgwdpE
+APfHFVGDVESALASAQelaGERTVEVAAG-DVGGQVLAagLIDEVRMDVVPVVFgSGKRFFGSVDAPHL--------------------------
+>gi|254389245|ref|ZP_05004474.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064]gi|326444933|ref|ZP_08219667.1| putative riboflavin-specific deaminase/reductase [Streptomyces clavuligerus ATCC 27064]gi|197702961|gb|EDY48773.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064]
+-VVLSAAMTVDGYLDDASPERLLlsNAADFDRVDQVRAQsDAILIGATTVRKDNprllvnsdERRAKrvadgksayPLKVTVTRTGDLSADLnfwhhggk
+klVIt-VDdavekvrttlgdLADVVsvgpdlrdwglvl---delgRrNVGQLMVEGGGTIHTQLMaaDLADEVHLAIAPLLVG-qpGAArflgaadYPGG
+STARMKVLEVRA-------------------
+>gi|326802356|ref|YP_004320175.1| hypothetical protein Sph21_5009 [Sphingobacterium sp. 21]gi|326553120|gb|ADZ81505.1| hypothetical protein Sph21_5009 [Sphingobacterium sp. 21]
+-IIIVANIAANGKVLvSDH--PHHqlPQETMDFYLKLVNqIGNLVIGVRTFENFekfPdhvkALFKNVEIVVLADKPFISSTYPVVNKPTEAIDYFSkkG
+FTEIAIGGGTGTFNTFLEgnFVTDIYFNISPIIT----------------------------------------
+>gi|338707733|ref|YP_004661934.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. pomaceae ATCC 29192]gi|336294537|gb|AEI37644.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. pomaceae ATCC 29192]
+-ITLKLATSLDGCIAlENGKSHWITGErARAhaHLERM-RSELIVVGRGTWEVDnPrldvRlLgLEHRspIRAVLGHGSLP-PDWIGLEQ-PTDVSLTAA
+-DHVLVEGGAKAAAAFIkaDIVDRILFYRAPILIgGGiaslsDIGLQNLAEThgRWCHKETRMLGN-------DQLDAYVR-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 3785 * * * * * * 5171 * 4730 332 4943 * * * * * 4823 * * 1
+ 232 2753 * 977 1023 * * 5430 1320 0
+
+I 2 * 6890 * * 4411 * * 1204 6808 2321 4715 * * * 6750 * 5859 2127 * 7003 2
+ 0 * * * * * * 7963 0 0
+
+S 3 4080 * * 4224 5795 6218 5767 2356 2984 5047 7068 4605 * 5377 3455 3400 3368 3155 * 5801 3
+ 0 * * * * * * 8030 0 0
+
+L 4 3588 * * * 4422 5199 * 3061 * 1548 3373 * * * * 4148 * 3143 * 3118 4
+ 26 6251 7804 711 1362 * * 8277 1087 0
+
+I 5 6124 7113 5197 6375 3960 6040 5135 1549 4289 6370 4299 4386 * 6553 * 4167 7045 3163 5798 3010 5
+ 11 7045 * 0 * 0 * 8273 1000 1000
+
+A 6 2657 5388 * 6081 4109 5753 * 3167 * 3328 3472 4859 * 5644 7725 4815 4207 2405 3816 5908 6
+ 7 * 7660 * * * * 8264 0 0
+
+A 7 630 5377 6431 * 4729 6338 5497 4807 * 7124 6383 4218 7233 6559 7226 4321 5756 4695 7350 * 7
+ 0 * * * * 0 * 8264 0 1011
+
+L 8 4024 5268 * 5933 6799 * 7196 2577 5833 3267 3048 7183 * 4030 6505 4898 3367 2048 * 5709 8
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+ 105 4399 5475 661 1444 862 1153 8152 1537 1366
+
+E 139 4135 * 5460 2446 * 5707 4482 7372 2897 5871 * 6789 4620 3756 2629 4015 2894 5348 * 6749 139
+ 53 6128 5522 2488 283 2050 399 8095 1072 1344
+
+F 140 3806 7020 3232 3520 5173 5112 4456 5874 4254 5640 5411 * 3835 3709 3044 3574 3753 3881 * 5784 140
+ 142 3807 5494 2035 404 1880 457 8050 1564 1524
+
+H 141 5126 6436 6542 5273 2179 5578 3814 4002 5054 3376 * 6414 * 6271 4808 4282 3975 3491 5175 2949 141
+ 345 * 2234 * * * 0 7826 0 1630
+
+D 142 3281 5775 3373 2622 4706 2769 * 5432 5111 * * * 4631 3120 5468 3320 5358 4587 * 4695 142
+ 478 * 1826 * * 2782 227 6574 0 2598
+
+A 143 3001 5361 4479 3216 * 3751 * 3239 3313 * * * 2755 5197 4178 5444 5198 2872 * * 143
+ 225 5325 3068 1895 452 2709 239 6042 1133 3145
+
+D 144 5062 5012 1311 2828 * * * 4933 4841 5110 * 5129 * 3091 * * * 3004 * 5163 144
+ 115 5236 4311 1000 1000 1816 482 6099 1000 3087
+
+A 145 3942 * 4462 1647 3372 * 4434 5280 5288 4956 * * 3772 5386 4216 3784 3053 * * * 145
+ 73 5468 5220 2196 355 2371 310 5979 1118 2668
+
+Q 146 4587 * 2420 1894 * 5464 * * 3212 5563 5455 3449 * 4623 4094 5404 3907 5601 * 5253 146
+ 30 * 5579 * * 927 1077 6060 0 2432
+
+N 147 * * 2750 4597 * 2954 3848 5364 5989 * * 1738 4818 5877 5388 3926 3674 5693 * 4967 147
+ 53 * 4793 * * 3139 174 6785 0 1738
+
+S 148 3586 * 3253 3659 4723 1444 * * 3222 * * 3805 4405 4023 * 5986 * * * 5373 148
+ 441 5925 2017 2585 263 1103 904 6844 1028 1818
+
+H 149 5461 * 5575 5371 3535 4287 5833 4429 5512 4035 * 5369 3444 * * 3529 4514 2429 4628 2513 149
+ 0 * * * * 1601 577 6191 0 2228
+
+S 150 4698 5990 4936 3286 * 3768 * 4520 3353 5720 * 4089 2993 4696 2951 2535 4925 5727 * * 150
+ 0 * * * * 102 3874 6326 0 1817
+
+Y 151 5596 4980 5423 6011 1982 * 4139 4966 * 2864 * * 5324 * * * 5130 3514 5953 1876 151
+ 70 6043 4962 2000 415 0 * 7151 1018 1000
+
+C 152 3858 5115 4429 3134 * * 4372 3260 4456 5759 * 6117 * 3474 4450 4461 2657 2694 * 5920 152
+ 0 * * * * 0 * 7102 0 1127
+
+F 153 4507 * * 5633 1357 * 6267 3055 * 3192 6220 5330 * 4851 5546 * 6027 3752 6024 3275 153
+ 23 5959 * 2000 415 * * 7149 1020 0
+
+E 154 5832 4007 6095 3641 5081 * 4757 5972 3892 2251 * 6128 * 3239 3958 * 3809 2625 5866 5042 154
+ 19 6254 * 2000 415 * * 6869 1000 0
+
+I 155 * * 6163 3321 5970 4616 4625 3731 3625 4500 6355 4815 * 6011 3805 * 2220 2156 * 6113 155
+ 0 * * * * * * 6855 0 0
+
+L 156 * * * * 3967 * * 5249 5970 3227 * * * * 5900 5345 * * 2966 695 156
+ 0 * * * * * * 6855 0 0
+
+E 157 4381 6079 4969 3370 * * 5469 3994 3436 4835 5928 4386 * 3470 2213 5052 4947 3067 * 4515 157
+ 0 * * * * * * 6855 0 0
+
+R 158 * * * * * 5962 * * 1988 4890 * 3154 4898 5939 1009 6008 * 5418 * * 158
+ 82 4185 * 0 * * * 6810 1149 0
+
+R 159 5356 * 5140 4313 * * 5107 4013 1577 * * * 3140 4126 2981 3394 5157 4318 * * 159
+ 0 * * 0 * * * 5599 0 0
+
+//
+�HHsearch 1.5
+NAME 4186931bf3bd591aa12aac05cbb54275
+FAM
+FILE 4186931bf3bd591aa12aac05cbb54275
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:15:10 2013
+LENG 69 match states, 69 columns in multiple alignment
+FILT 106 out of 1048 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEEEEECCCCEEEEECCCCCEEEEEEHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEC
+>ss_conf PSIPRED confidence values
+997879999987999826895389971489876780045877689999999999989999587899979
+>Consensus
+xxxxxGxVkxxxxxkgyGfIxxxxxxxdiffhxsxxxxxxxxxlxxGxxVxfxxxxxxxGxxAxxVxxx
+>4186931bf3bd591aa12aac05cbb54275
+SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL
+>gi|288961931|ref|YP_003452241.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]gi|288914211|dbj|BAI75697.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]
+---mAYGTVRWYNLDSQSGLIEPWEDGATVYFDRATLRQSGLDIVADGEDVRYLAVGSEDAPVAQRVELI
+>gi|57339988|gb|AAW49981.1| hypothetical protein FTT1051 [synthetic construct]
+--MKIKAASVCNDSKTIKktWQTP-------MLSTQHQESE---SI-EGKAPAGNEQFGTQG-------LS
+>gi|242032877|ref|XP_002463833.1| hypothetical protein SORBIDRAFT_01g007080 [Sorghum bicolor]gi|241917687|gb|EER90831.1| hypothetical protein SORBIDRAFT_01g007080 [Sorghum bicolor]
+-----------------------------MAIRITMSYSGYvaQNLAASFGLRCTTA--------------
+>gi|307152296|ref|YP_003887680.1| cold-shock protein DNA-binding protein [Cyanothece sp. PCC 7822]gi|306982524|gb|ADN14405.1| Cold-shock protein DNA-binding protein [Cyanothece sp. PCC 7822]
+----EALVVRLFPEQDYGFLKTLDG-EEIYFHRNSVLHNDFERLAVGTGVRYSAIEDDQGPRATTVQI-
+>gi|82914243|ref|XP_728783.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]gi|23485305|gb|EAA20348.1| hypothetical protein [Plasmodium yoelii yoelii]
+-------------VQAHGpdFPADSGG-RLRHHRDAGRPG---NLFSPAQRVRFAEEMGEEGPQASSVRV-
+>gi|323498541|ref|ZP_08103534.1| hypothetical protein VISI1226_09719 [Vibrio sinaloensis DSM 21326]gi|323316430|gb|EGA69448.1| hypothetical protein VISI1226_09719 [Vibrio sinaloensis DSM 21326]
+--MaIQGTISEWDQHKGYGYIAVDDQEAQIRFHLFDFEAFGHP-PQLRDRVQFRLAKDDQGeLRAVHVER-
+>gi|294788309|ref|ZP_06753552.1| membrane protein,putative [Simonsiella muelleri ATCC 29453]gi|294483740|gb|EFG31424.1| membrane protein,putative [Simonsiella muelleri ATCC 29453]
+----SGKIVKWNSERGFGFVKTAEVANDIFFHVNTLVGKDEISPQQNESVtvYAKYDDDKKRWSATKITS-
+>gi|50085859|ref|YP_047369.1| hypothetical protein ACIAD2809 [Acinetobacter sp. ADP1]gi|49531835|emb|CAG69547.1| hypothetical protein; putative membrane protein [Acinetobacter sp. ADP1]
+---MKGKILDYSIQTSTGIIRAENQ-QRYSFSGSAWKEQ--QAPMRGMHVDFEID--------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 * * * * * * * * * * * * * * * 0 * * * * 1
+ 0 * * * * * * 3105 0 0
+
+G 2 3654 * 2230 * * 1415 * * 1985 * * 3646 * * * * * * * * 2
+ 101 3888 * 2000 415 * * 4582 1000 0
+
+K 3 * * * 5537 * * * 5588 4015 3509 1274 * 5030 * 1458 * * * * * 3
+ 83 4162 * 0 * * * 6947 1281 0
+
+M 4 4526 * * 4366 4208 * 4824 3400 3951 3428 3512 * 4663 4137 3562 4077 5588 3472 * 2970 4
+ 0 * * * * * * 7872 0 0
+
+T 5 4213 * * 6778 4879 * 4784 4226 3256 4127 5759 4765 * 2720 3125 4159 2616 5325 * 3545 5
+ 0 * * 1000 1000 * * 7719 1000 0
+
+G 6 3651 * 6592 * * 296 * * 5310 * * * * * 5400 6602 6369 5369 * * 6
+ 0 * * * * * * 7755 0 0
+
+I 7 4006 * * * 5363 * * 4185 2392 5488 6876 5676 * * 3180 5678 1453 3293 6474 6743 7
+ 0 * * * * * * 7755 0 0
+
+V 8 5310 4775 * * * 5400 * 1510 * 3566 * * * * * * * 1062 * * 8
+ 0 * * * * * * 7755 0 0
+
+K 9 4722 6546 5781 * 6769 5400 7091 4407 1364 4579 * 6980 * 6402 3090 3176 4026 3673 * 5159 9
+ 0 * * * * * * 7755 0 0
+
+W 10 6337 6212 4220 4113 3705 * 5091 6918 3875 6702 * 4834 * 5884 3153 2369 4668 4832 2069 * 10
+ 12 * 6914 * * * * 7755 0 0
+
+F 11 * 4789 * * 1536 5395 * 4847 * 3423 5554 * * * * * 6745 5088 2240 2354 11
+ 63 * 4553 0 * 0 * 7740 1000 1000
+
+N 12 * 6753 1887 6754 4039 6783 5381 5659 3966 4995 5723 1707 * 6943 4843 3654 * 4202 * * 12
+ 55 6783 5144 2807 222 * 0 7711 1000 1319
+
+A 13 4813 * 2833 3619 6740 6398 4123 5610 5573 6258 5986 5663 2299 4294 3525 3320 3961 4176 * 6245 13
+ 35 5365 * 2000 415 198 2963 7777 1114 1583
+
+D 14 3361 * 2942 2498 * 5054 5678 6599 3146 6051 * 4806 5989 4028 3843 3934 3648 3860 * 6515 14
+ 0 * * * * 0 * 7824 0 1000
+
+K 15 6031 * 4455 3467 * 4087 6438 6777 1595 5930 5656 3805 * 3685 2410 4829 5087 * * * 15
+ 0 * * * * * * 7824 0 0
+
+G 16 5446 * 4933 5740 * 656 5710 * 4582 * 6330 4754 * 5095 3495 5073 5356 6898 * * 16
+ 0 * * * * * * 7824 0 0
+
+F 17 6707 * * * 1594 * 4763 4720 6745 5307 * * 6232 * 6613 6436 4253 6373 4553 1294 17
+ 33 5459 * 0 * * * 7824 1114 0
+
+G 18 6373 * * 5459 * 163 * * 5356 6393 * * * * 5487 * 6232 * * * 18
+ 59 4635 * 1000 1000 * * 7824 1384 0
+
+F 19 4971 * * * 688 * * 4955 * 4217 5930 * * * 5566 6310 6107 3989 4407 3532 19
+ 0 * * * * * * 7824 0 0
+
+I 20 6393 6673 * * * 5459 * 633 * 3239 * * 5980 5356 * * 6629 2921 * 5487 20
+ 0 * * * * * * 7824 0 0
+
+T 21 3574 6472 4637 3001 * * 6383 4948 3580 4559 * 4539 6467 4084 3409 3495 2509 3517 * 6620 21
+ 15 * 6629 * * * * 7824 0 0
+
+P 22 3834 5018 3781 4387 * 3999 6641 5929 * 6789 * 4693 2207 4462 3558 3238 3740 3270 * 6566 22
+ 69 6454 4836 2322 322 * 0 7820 1059 1005
+
+D 23 4171 * 1844 2852 4697 5066 5478 5938 5124 4085 * 4103 3115 6924 4320 4729 5657 4988 6414 * 23
+ 79 4226 * 2114 379 2328 320 7661 1553 1421
+
+D 24 3969 * 2205 2925 5113 2508 4523 * 5361 5300 * 3492 4840 6307 4296 4105 4874 * * 6624 24
+ 83 4368 7069 810 1218 * 0 7676 1375 1318
+
+G 25 3996 6541 3812 5082 5094 1376 6841 6925 4953 5451 6822 5214 4317 4454 5281 4088 3455 6827 * 5435 25
+ 426 * 1968 * * * 0 7679 0 1440
+
+S 26 3472 * 3124 3119 * 1602 6195 6610 5922 6051 * 5675 3756 3669 3675 5647 6512 6170 * * 26
+ 37 5309 * 993 1008 237 2724 7363 1078 3724
+
+K 27 4662 * 3080 2418 6284 3265 6538 6494 2855 6017 5002 4401 3521 3908 4613 4663 4678 6502 * * 27
+ 0 * * * * 1423 673 7676 0 1388
+
+D 28 4591 * 1173 2928 * 5375 * * 5205 4330 * 3677 * 4904 3462 4497 5443 6264 * * 28
+ 0 * * * * * 0 7683 0 1205
+
+V 29 4676 5708 * * 4877 5321 * 1517 * 3742 5098 * * 6345 5080 * * 1780 * 3378 29
+ 0 * * * * 0 * 7683 0 1205
+
+F 30 4428 * 6675 * 845 * 5983 * 6806 3971 4252 * * 5503 4409 5733 * * 4665 3075 30
+ 0 * * * * * * 7854 0 0
+
+V 31 4789 6334 5460 * 1078 6327 5983 3901 * 3206 5141 * * * 6304 5531 * 2404 * * 31
+ 0 * * * * * * 7854 0 0
+
+H 32 6968 * 4409 6628 7158 5969 773 6886 6322 6362 6821 4869 4518 5397 4539 3181 6980 * * 5519 32
+ 0 * * * * * * 7854 0 0
+
+F 33 2616 * 5983 * 3339 5546 * 2829 3578 4265 5839 6424 6469 4279 2917 5216 4568 3711 * 4193 33
+ 0 * * * * * * 7854 0 0
+
+S 34 3099 6806 4826 4248 6783 6622 5849 5406 3991 * * 3162 * 4876 4285 1655 2748 * * * 34
+ 0 * * * * * * 7854 0 0
+
+A 35 2232 6903 2370 3964 * 3783 4550 5614 5737 5001 * 3160 * 4250 * 4045 3805 4683 * * 35
+ 0 * * * * * * 7854 0 0
+
+I 36 6970 * * 6469 2662 * * 2567 * 1669 5697 * * 5365 5983 5943 5578 2158 5721 * 36
+ 51 5751 5939 1780 496 * * 7854 1087 0
+
+Q 37 4093 5784 4488 2661 * 5662 6208 5144 3318 4521 * 6010 3996 3513 3456 3193 4849 4255 * 4013 37
+ 58 5743 5577 0 * * 0 7839 1081 1080
+
+N 38 3631 6647 3254 4358 * 2512 4405 6746 3141 5912 6222 4413 4317 3679 4171 3289 5626 6925 * 5719 38
+ 114 6283 3986 885 1126 1572 592 7860 1105 1309
+
+D 39 3479 4944 3656 3300 4811 4694 5631 5338 4025 5504 6788 3607 3931 4467 4564 3349 3577 5247 6619 4974 39
+ 396 6854 2112 0 * 1063 940 7772 1000 1828
+
+G 40 4155 * 2336 5242 * 1637 5488 * 6527 6139 6228 3442 5341 5287 6286 2894 4398 * * * 40
+ 280 3057 4158 1748 510 1522 618 7354 1778 3521
+
+Y 41 4394 5615 * 5632 2832 6255 3793 4297 * 2842 5453 5475 5264 4036 3209 5523 5609 3328 6586 3277 41
+ 428 4488 2238 1489 636 580 1596 7354 1427 3076
+
+K 42 4627 6157 3263 3740 6325 3791 5368 5453 3750 4761 * 3972 3804 4065 2531 3801 5536 5412 * 4695 42
+ 120 6671 3831 0 * 225 2793 7489 1000 3306
+
+S 43 3925 6647 3572 3775 * 5471 6341 4830 4377 4032 5232 5862 4418 5156 3341 2683 2805 4873 6893 5102 43
+ 13 * 6769 1000 1000 0 * 7747 1000 1836
+
+L 44 5679 * * * 4670 * * 2951 * 1342 5422 * 1949 6401 * * 6080 3343 * 6648 44
+ 36 * 5354 0 * 0 * 7808 1000 1000
+
+D 45 3551 4802 4432 4406 6513 4861 5544 5206 2821 5938 6670 5647 5992 3142 3613 2905 3849 4187 6347 5442 45
+ 25 6796 6946 1000 1000 0 * 7680 1000 1205
+
+E 46 3949 6448 3817 2576 6080 * * 4278 4725 4402 5761 4490 2822 4495 4821 4244 4683 2737 * 6966 46
+ 0 * * 0 * 0 * 7808 1000 1000
+
+G 47 5963 * 4078 * * 483 * * 5445 * * 2981 * * 6778 4661 * * * 6488 47
+ 0 * * * * * * 7821 0 0
+
+Q 48 3815 * 1904 2516 6904 * 6496 6160 4472 6111 3732 6961 * 2782 6398 4664 3578 5719 * 6470 48
+ 0 * * * * * * 7821 0 0
+
+K 49 3920 * 3943 3190 * 5667 5517 5022 4523 4885 5413 * 3407 3997 2104 4075 4166 4325 6504 5587 49
+ 13 6841 * 1000 1000 * * 7821 1000 0
+
+V 50 * 6820 * * 6327 6290 * 3649 * 3157 5902 * 5357 * * * * 448 * * 50
+ 13 6855 * 1000 1000 * * 7821 1000 0
+
+S 51 4968 5624 5069 1973 6509 6810 5773 5226 4976 4516 * * * 4697 3712 2609 2843 4579 6111 4367 51
+ 0 * * * * * * 7821 0 0
+
+F 52 4977 5897 * 6083 756 4905 * 6111 * 5139 * * * * * * * 3601 * 2426 52
+ 14 6664 * 1000 1000 * * 7821 1000 0
+
+T 53 4496 6202 3460 1889 * 6354 6888 5554 3784 5653 7040 3920 * 3893 3789 3562 3496 4383 * 6356 53
+ 27 * 5748 * * * * 7821 0 0
+
+I 54 4646 6398 6948 4140 4937 * * 2391 5860 2329 4716 * 4231 * 5815 6664 4106 2117 6378 5364 54
+ 30 6594 6584 1585 585 0 * 7854 1001 1099
+
+E 55 3547 4769 4066 2592 5400 2876 5567 5907 4352 6034 * 7170 5147 3689 3987 5119 4458 2834 * * 55
+ 0 * * * * 1052 950 7786 0 1105
+
+S 56 4001 4857 3705 2642 5356 5648 5073 5402 3724 5399 4826 4459 3575 3723 3462 6103 3563 5001 7042 * 56
+ 14 * 6737 * * * 0 7650 0 1001
+
+G 57 * * 2227 6778 6873 1966 * 5471 5829 6232 4459 3839 * 5265 4191 3220 3236 4328 * * 57
+ 62 5039 6451 1265 776 971 1030 7599 1282 1108
+
+A 58 3857 * 2754 3188 6650 4246 6765 5499 3582 * 5545 4690 2602 3764 3588 4118 4965 5355 * * 58
+ 116 3693 * 2125 376 959 1042 7651 1654 1110
+
+K 59 6021 * 4373 3625 5869 3884 5689 * 1930 6490 6230 4225 6185 3253 2230 4953 5286 * * 5583 59
+ 32 5490 * 1251 786 * 0 7660 1119 1000
+
+G 60 4827 5259 * 6468 * 533 * * 3747 6226 * 5645 * * 4520 3560 * * * * 60
+ 591 1766 4575 627 1504 * 0 7650 3483 1000
+
+P 61 4907 4853 5602 4700 4806 6268 * 4663 3274 2236 5828 * 1932 5624 4383 * 6241 4419 5188 4886 61
+ 19 6266 * 0 * 1882 457 7463 1003 1461
+
+A 62 3992 6471 6448 3673 * * 5808 5066 3203 5244 4576 5109 * 2176 2711 3493 5592 3466 6905 * 62
+ 30 5617 * 0 * * 0 7499 1113 1310
+
+A 63 208 6459 * * * 5238 * * * * * * * 5063 * 5953 * 4319 * * 63
+ 0 * * 1000 1000 1988 419 7499 1000 1310
+
+G 64 3115 * 6459 3367 4348 6140 6878 3918 3633 3642 * * 6711 5488 4958 3939 3239 2283 * 4756 64
+ 0 * * * * * 0 7510 0 1205
+
+N 65 4053 * 2916 3403 * 6387 4860 * 3941 * * 1916 * 3732 3562 3307 4733 5544 * 5942 65
+ 0 * * * * * 0 7510 0 1205
+
+V 66 4315 * * 5689 5882 * * 1709 * 4089 * * * * * * * 866 * * 66
+ 18 6356 * 0 * * 0 7471 1000 1205
+
+T 67 4703 4837 * 3490 6772 * 3740 5382 3359 4647 * * * 2999 2266 4190 2729 5311 * 5134 67
+ 0 * * * * 0 * 7443 0 1205
+
+S 68 4566 * * 6820 5243 * * 3567 3524 1835 * * 3173 6269 3331 4307 * 2590 6002 6003 68
+ 0 * * * * * * 7215 0 0
+
+L 69 * * * * * * * 1596 * 1521 4239 * * * * 3755 * 2845 * 4192 69
+ 0 * * 0 * * * 5467 0 0
+
+//
+�HHsearch 1.5
+NAME 448f640ce08539f9f492ab947cf5c879
+FAM
+FILE 448f640ce08539f9f492ab947cf5c879
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:10:18 2013
+LENG 196 match states, 196 columns in multiple alignment
+FILT 117 out of 167 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCEEEEEEEECCCEECCEEEECCCEEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCEEEECC
+CCCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9854554578996599999745976715289509989993762799998777645778898789999997447738999989989999878998897179
+777302688785289699986998177999999999862478765673010479999976779987868835588599999385899999998619
+>Consensus
+xxxxxvxxxxxxxWcxIxYyExxxrVGexfxxxxxxvxIDGfxdxxxxxrfcLgxlxnxxrxxxxxxxRxxIGxGvxLxxxxgxVxxxnxsxxxIFVqSx
+xxnxxxxxxxxtVxKvxpgxxxkvFdxxxfxxxlxxxxxxxxxxxxxlxxxcxiRISFvKGWGxxYxRqxItxxPCWiEIxlxxplxxlDxvlxxm
+>448f640ce08539f9f492ab947cf5c879
+LDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSP
+NCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM
+>gi|308489650|ref|XP_003107018.1| CRE-DAF-3 protein [Caenorhabditis remanei]gi|308252906|gb|EFO96858.1| CRE-DAF-3 protein [Caenorhabditis remanei]
+-----------VRWGVVSYYEEGDCYIER-ECYRGNFHIDSgFI--ISEQRLSLGLIQNPSRSTMAFKIRKAMIDGIRFSYKtDGSVWLQNNMRLPIFVT
+SGYLDDqCPGIRVNKVHKLYGHAKVKVFGFTRVKQIIRDrlyskqmarLYLQqnGnrnpMFEVYhripliaiqrearvttdSLVKYCCVKVSFGKGFGDA
+YPeRPIVSQCPVWLELKINSAFDYMDAILNDL
+>gi|24652852|ref|NP_725091.1| CG13188, isoform A [Drosophila melanogaster]gi|23240327|gb|AAF58603.2| CG13188, isoform A [Drosophila melanogaster]
+-------QIDDEIWAKVIVFERNRRVAKAY-ARAPVLTINGSDDGFDGMRIGLCGFDNPMRDQKTDEMKRVIGQGVKIKMDdAGNILIRRYAKSNVYVKS
+TASSPnEETSIGAEILKLPNQAlesekIVKLFDMKKFQSNVNRELRRAYPDRRRLETQCLSAVAFVKS------ENDILECPIWVLIVNVVAMDMLK---
+---
+>gi|268552851|ref|XP_002634408.1| C. briggsae CBR-DAF-14 protein [Caenorhabditis briggsae]gi|187035781|emb|CAP25118.1| CBR-DAF-14 protein [Caenorhabditis briggsae AF16]
+------------TWCHVQTFQLGVkkkaQAKEVFQTSQPTFTIEGGitTVGSTSSRMQLTC----GNSSKIQGIHQTFGEGIRMTKEKGTVWLTVLTaKC
+VVFIQSPFFNHINGKPLDTVIRVQNEHdelgnllhedklpTIKLFDSELYASELNAARSDPINRMETMEAFCKTRVSLAKGFNGDYAKK-----------
+----------------
+>gi|313232554|emb|CBY19224.1| unnamed protein product [Oikopleura dioica]
+------------DWARVSFYQKKMKRGPDFIARSRSFTIDGMTGPRCTsTRMPLGIRTLGLRgCPDTDRLLETVGHGIVIENKENCVLLRNISPVSVYVK
+SCQID-------STPIRIPAAHEVDLFFYDEFSRSIAER--NTLADLWQLREHCTLFISFGLCWGSStVQVESVDGLPCWLKLDLQHCW----------
+>gi|221125810|ref|XP_002162815.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
+----------VSGWCRVDCYERQHHVAT-FRMDEPVICIDGIHPVSDKHRISFAGLPTRSEDLKVLKVKSCIGKGVQLHQDErQNLWATRLGKNPIFVRG
+HTLCPELVK---LNGKLTQGVPMKVLDTSAFKEYMKKECeTSGLV-DDELRDKIMsrlkVCMSFIKD------TVVDEETPCWFEVWLI-----------
+--
+>gi|167517705|ref|XP_001743193.1| hypothetical protein [Monosiga brevicollis MX1]gi|163778292|gb|EDQ91907.1| predicted protein [Monosiga brevicollis MX1]
+----------RDVVASITYHERDSPLAQFY-LNQPIFNISCFRPVEDNtTTVSLSDIDNPCRDSRTEKIRRFIGSGLQVSIRRKCLYVTRLSRNPVFLKN
+YQSPStvSDSILLRENGELPDGAEVCLFDYQVFSKEIARMPAE-----L-ALKMATVSLAFVRT------GEFDDKIPCWIRIRMGDALR---------
+>gi|313217634|emb|CBY38686.1| unnamed protein product [Oikopleura dioica]gi|313218130|emb|CBY41437.1| unnamed protein product [Oikopleura dioica]gi|313231875|emb|CBY08987.1| unnamed protein product [Oikopleura dioica]
+----------EKPWCNVSVYECNNKIevystaktqlGVEYKVADanryaKKEAMKG-KNATQSDVFDLSSISNVNRSTDTWDLLEKLQRGLTLVYDREKR
+IVSChnNcKNLKIYVLSYLMNVECGKHEQSLIQVGPGASRVVYDGYQLAKTIEG-VNSTT--QNDLQKwalisqyanyFTVFRISFQP-WGPEYTKKRLT
+DCDLWLEIFMREYLDWINQIE---
+>gi|256052771|ref|XP_002569925.1| smad [Schistosoma mansoni]gi|227284678|emb|CAY17438.1| smad, putative [Schistosoma mansoni]
+-----------KPWANISYWESHHHVGRRWISGNNsSVIrssskqckkcynyVDSFNDTSL--------IPNLivHssmykSSSGWKQCCRLGSQGISLT
+LTTyGCVWLSNQAlatNLPIFVSSPCFHFHNAncssssssslnssaedFLvDRPVYRVPAGYSLLVFDLSSYENWLQQHSSssssassssyRQYsgnnhn
+gdnsnlsgnsnnsnnIDFDelhkthlwaknnNLCKNPIIHISLGKGWGPSYRRPDVTHCPARLEVWIN-------------
+>gi|71985803|ref|NP_492746.2| Temporarily Assigned Gene name family member (tag-68) [Caenorhabditis elegans]gi|38422270|emb|CAB70215.2| C. elegans protein F37D6.6, confirmed by transcript evidence [Caenorhabditis elegans]gi|38422275|emb|CAB70221.2| C. elegans protein F37D6.6, confirmed by transcript evidence [Caenorhabditis elegans]
+----------NRSWAKMTRYERKEQIGDTVWLHGPFAAV-GVLSKSvhDAQLECSpWDLKN----EVSfALIRQadPIG-----STNPEDVWLYNSGTRP
+LFL-SMTPNVSS--TKDTLRRLSPGYCIRVHRGEVSASAPASERTKVrRPSKDPALAQQNLVISVGKGWGPNYSRLYLTDIPCRYEVSF-----------
+---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 1984 0 0
+
+D 2 * * 1821 2520 * 3783 3882 * * * * 1993 4377 3938 * * * 4732 * * 2
+ 0 * * 2000 415 * * 2712 1030 0
+
+L 3 4933 * * * 3260 * * 2184 * 3327 3826 * 4817 4156 * 4179 4386 2148 * 4254 3
+ 0 * * * * * * 2954 0 0
+
+Q 4 * * 2555 5313 * 4241 3572 3308 * 4803 * * 5352 2546 2658 5212 2740 * * * 4
+ 211 3093 5707 915 1090 * * 3000 1093 0
+
+P 5 3324 3214 5328 3863 * * * * * 4389 * 4926 1449 * * 2312 * * * 4309 5
+ 26 * 5823 * * 0 * 3359 0 1000
+
+V 6 * * * * 4152 4060 * 3524 * * * * 4526 * * * * 408 * * 6
+ 0 * * 3322 152 0 * 3359 1000 1000
+
+T 7 3801 2706 3814 2937 * * 4926 * * 4951 * 5510 2972 3898 3115 3724 3607 5757 * * 7
+ 0 * * * * * * 3617 0 0
+
+Y 8 5214 * * 4113 3325 4736 * * * 6426 * 5618 4812 3132 * 5823 * * * 789 8
+ 0 * * * * * * 4050 0 0
+
+S 9 5253 5640 6326 1730 * 5215 5075 3787 5823 * * 5783 3937 3147 3129 3287 3644 * * * 9
+ 74 5783 4968 0 * * * 4664 1000 0
+
+E 10 4145 * 2888 1175 * 4448 4858 * 4736 5711 6984 3958 5061 5599 5493 * 4617 5556 5533 * 10
+ 0 * * 2322 322 * 0 5061 1028 1048
+
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+
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+
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+
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+P 35 5340 * 4355 5676 * 4147 4737 6634 4202 6021 5709 4042 1449 4135 3998 3631 3526 * * * 35
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+
+L 37 4179 5019 * 5516 3093 * * 2792 * 2766 * * * * * * 6194 1124 * 6501 37
+ 8 * 7558 * * * * 5969 0 0
+
+T 38 4116 5205 6272 * 5772 * 4062 2685 4634 3716 * 2593 * 6013 5610 4910 2148 3972 6020 6328 38
+ 24 5916 * 3700 115 * 0 5967 1037 1000
+
+V 39 * * * * * * * 959 * 6154 5515 * * * * * * 1153 * * 39
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+
+D 40 * * 370 5529 * 5555 5549 * 5162 * * 3710 * * * 4818 * * * 5497 40
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+
+G 41 4806 4656 * 5573 * 315 * * * * * 4790 * * * 3976 * * * * 41
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+
+F 42 6054 * * * 1054 3419 7125 5681 * 3855 5648 * * * 6296 2818 6515 5723 * 3189 42
+ 105 4901 4778 1523 617 474 1837 5853 1169 1301
+
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+ 151 4465 4207 1072 931 560 1637 5900 1286 1255
+
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+ 52 5029 7728 1000 1000 496 1781 5961 1153 1208
+
+N 47 5428 4926 1891 4263 * 3427 4894 7488 5312 4041 * 3476 * 3968 4669 3890 3763 4169 * 6117 47
+ 181 3490 5120 1777 498 513 1741 5973 1541 1054
+
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+ 461 1869 * 419 1989 1572 591 5944 2648 1146
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+
+F 51 * 5931 * 5773 1116 * * 2721 * 2672 3215 * * * * 6461 * 4603 * 4835 51
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+
+C 52 5659 994 5487 * * 2973 * * * * * 5170 5716 5785 * 1968 * * 6993 * 52
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+
+L 53 * * * * 3941 * * 5437 * 265 5691 6356 * * * 5782 * 5054 * * 53
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+
+G 54 3393 5577 * 5270 6021 951 6144 * * 5832 * 3482 * 6355 4548 3762 4681 7373 5041 * 54
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+L 56 * 5425 6217 5523 2704 * * 2730 5992 1114 5120 * * 6093 4626 * * 4883 * 4578 56
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+
+A 63 3814 * 2700 2327 6692 7267 7637 5759 4887 4850 * 4189 3290 3386 * 2874 4000 * 5976 * 63
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+
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+
+V 65 3480 * * 7385 * * * 2480 * * * * * * * 2303 2257 1846 5894 5764 65
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+
+E 66 3690 * 4515 1666 4685 5422 * 5011 2786 4661 7471 6239 6988 3415 4686 3855 * 6391 5440 5462 66
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+
+M 67 6064 * 3956 3380 * 4955 5159 * 2502 4306 4453 2757 * 4428 2442 4027 5316 5226 * * 67
+ 30 * 5616 * * * 0 5889 0 1207
+
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+
+R 69 * 5838 * * * * 5674 * 3449 4089 * * * 6687 342 6133 * * * * 69
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+
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+
+I 72 * * * * 4765 5637 * 393 * 4611 5263 * * * * * * 3122 * * 72
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+
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+
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+L 78 6231 * * * 3861 * * 2281 * 739 5338 * * * * * 7945 3568 * * 78
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+
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+I 81 * 6428 2550 1812 6617 6651 5488 4499 3289 4115 7959 5585 * 6018 3717 6607 4644 3065 * * 81
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+
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+
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+
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+
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+
+N 121 4817 2768 5809 4867 * 5390 6032 4849 4341 5554 * 4601 4351 4985 5395 1632 3797 5872 7317 4116 121
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+
+F 125 * * * * 154 * 5050 * * 5745 * * * * * * * * * 4252 125
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+
+N 126 * 5428 670 4755 5729 4427 7178 * * * * 2867 * 7155 4447 4688 6613 * * * 126
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+
+N 127 * 7681 6003 5307 3780 3981 4935 4303 6157 2786 2675 3023 6750 * 5626 4773 3676 * 6503 2828 127
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+
+Q 128 4393 * 4005 2369 * 7535 5462 5754 3713 * * 3652 * 2511 2720 4448 3738 * * 4433 128
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+
+E 129 4444 7695 4527 3706 * 6770 4950 5185 2263 3038 6365 5671 6625 2842 3042 4494 * 3749 * 6859 129
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+
+F 130 3288 4926 * * 890 7167 5985 6150 * 4860 6295 * 7068 * * 3421 5240 5515 * 3445 130
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+
+A 131 1591 5487 7456 4256 7014 4833 5547 * 3163 5867 5792 4583 6735 3584 4675 2939 6455 6017 * 4449 131
+ 6 7931 * 2322 322 * 0 5955 1000 1345
+
+A 132 4719 7622 4517 2828 * 6750 5204 * 3021 5282 5266 3609 7815 2155 4133 3284 4321 5579 7324 6232 132
+ 10 7244 * 4392 70 2656 249 5955 1000 1345
+
+L 133 3680 * 6062 3868 * * 4386 4690 6693 2165 3234 3378 * 4498 4353 4200 4714 4876 5409 3762 133
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+
+L 134 4989 6467 * 6144 * 6236 * 2892 5202 905 5386 7638 5147 4606 4545 7228 6154 3792 * * 134
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+
+A 135 2015 6783 7186 3048 5294 5533 4748 7217 5203 * 6813 4211 7257 3405 3189 2618 4864 6622 * 5907 135
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+
+S 137 2100 4909 * 2475 * 5666 5383 * 5014 6220 5177 5270 5929 5156 3453 2518 3650 6459 * 6569 137
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+
+V 138 3160 5160 5688 4756 4679 * 6411 5308 4407 3458 7592 6122 5352 4998 3573 3693 4135 2125 5446 4512 138
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+
+N 139 3704 5963 * 4673 * 4523 4322 4991 3537 4690 * 2848 4176 3670 3567 3071 3152 5084 * * 139
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+
+Q 140 4548 * 3919 3760 6545 4053 3240 6775 3740 4726 7262 4409 5363 2964 2454 3397 6184 5538 * * 140
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+
+G 141 3521 * 7606 4580 6612 1176 6036 6672 7110 4851 6062 6576 3960 5263 6643 3661 3210 5227 * 7223 141
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+E 143 3992 * 3453 2174 6093 6165 4617 4265 * * * 3080 2470 4338 4921 5553 4544 4418 * 6545 143
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+
+A 144 2616 * 2262 4152 6721 2555 4625 * 4167 5544 * 5162 4509 5872 4276 3811 4823 6019 * 6337 144
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+
+V 145 4397 * 5587 6130 5883 5657 4824 5110 5661 4388 4120 * 3413 4936 3571 5381 4303 1372 * 5667 145
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+
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+
+Q 147 5547 5627 2293 2904 5120 2725 7457 5714 4394 * * 4918 4426 3898 4103 2795 5680 * * * 147
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+
+L 148 4276 * 6053 * 7196 * * 5829 * 642 4448 * 2491 * * * * 5568 6118 6824 148
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+
+T 149 4314 4663 6403 3304 6141 6005 * 4311 5011 3620 * 4860 5753 3710 2570 3951 3059 3577 7024 5022 149
+ 10 * 7226 * * 715 1355 5923 0 1494
+
+R 150 3955 5589 2373 4917 * * 5215 * 2081 4563 6577 4347 7121 * 2318 5349 4386 6213 * 5066 150
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+
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+ 30 5592 * 1250 787 1240 794 5932 1076 1182
+
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+ 0 * * * * 1449 658 5948 0 1081
+
+T 153 5218 3556 * 6512 3853 5717 6353 3516 5247 3894 4714 4442 * * * 2226 2080 4027 * * 153
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+
+I 154 * * * * 4303 * * 1557 6730 2654 3947 * * * * 4216 4303 1879 * * 154
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+G 163 * * * * * 68 * * * * * 5683 * 6308 * 6190 * * * * 163
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+
+A 164 2430 * 4506 3091 * 4626 5658 * 4875 * * 4901 1492 4751 5830 3843 * 4739 * 7006 164
+ 43 * 5076 * * * 0 5576 0 1779
+
+E 165 4236 3848 2112 2574 6572 3368 5573 * 3423 6570 7015 4300 * 4585 6379 3536 4922 6087 * * 165
+ 35 5363 * 0 * 4073 88 5447 1058 1858
+
+Y 166 * * * * 6155 * * 6069 * * * * * * * * * 4544 * 107 166
+ 0 * * * * * 0 5445 0 1807
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+R 167 5571 * 6108 * * 4578 3136 * 3782 * * 4247 2653 4256 2366 2271 3815 * * * 167
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+
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+
+V 171 5843 6306 4721 * * * 6248 1016 * 3901 4817 * 6163 * * * * 1699 * * 171
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+S 173 5017 * 3401 2558 * 4146 5226 * 3747 * * 3856 * 3785 4484 1472 * * * * 173
+ 0 * * * * * 0 5898 0 1000
+
+T 174 5595 1348 * * * * 6303 4320 5945 4416 * * * * * 4497 1297 6717 * * 174
+ 0 * * * * * 0 5898 0 1000
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+P 175 * 5586 5351 * * * 7226 * * * * * 77 * * * * * * * 175
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+C 176 5277 362 * * * * * 5529 * 4312 * * * * * * 6542 3144 * * 176
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+W 177 * * * * * * * * * 6303 * * * * 4330 5409 * * 153 6078 177
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+I 178 * * 6265 * 3509 * * 1575 * 1573 7107 * * * * * * 2415 * 4930 178
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+E 179 5978 * 6763 431 * * * * 5568 4906 3892 6156 * 4514 4940 5571 * * * * 179
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+H 181 6123 * 5511 * 5257 * 2038 3990 3642 2810 * 5704 * 3744 3239 4764 4705 3786 4660 5532 181
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+
+L 182 * * * * 2533 * * 3441 * 768 4126 3714 6136 * * * * * * * 182
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+
+N 183 4601 5347 6392 * * 5031 2289 5457 6868 3208 * 1700 7111 4848 4251 4457 4131 4547 * * 183
+ 0 * * * * 1524 616 5730 0 1062
+
+G 184 3976 * 4155 4074 * 2732 4634 5036 4983 * * 3538 4288 4569 2469 3688 6808 3040 * * 184
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+
+P 185 1763 3999 * * * * 5008 * * * * 5550 1031 5308 5614 5383 * * * 4990 185
+ 0 * * * * 0 * 5555 0 1000
+
+L 186 4599 5066 * * 5163 * * * * 639 2990 * 5896 * 6007 * * * 5028 3841 186
+ 79 4228 * 0 * * * 5421 1132 0
+
+Q 187 3340 * 2333 3813 6756 5954 5366 * 3220 4507 6032 5700 * 1601 4743 5098 * * * * 187
+ 0 * * * * * * 5083 0 0
+
+W 188 * * 4950 4997 4760 * * 5685 5459 2372 4004 * * * * * * 3821 1121 3813 188
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+
+L 189 4227 * * * 4758 * * 2758 * 738 3612 * * * * * 4978 5897 * 4974 189
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+D 190 * * 279 4922 * 5428 * * 4603 * * 4448 * 4938 * * * * * * 190
+ 0 * * * * * * 4792 0 0
+
+K 191 3322 * 4167 3382 * * * * 2325 * * 3606 * 2424 2548 3748 4844 * * * 191
+ 0 * * * * * * 4659 0 0
+
+V 192 5101 * * * 5424 5366 * 2864 5844 3388 * * * * * * 4882 740 * 4635 192
+ 0 * * * * * * 4659 0 0
+
+L 193 * 5577 * 4330 4786 * * 4113 * 552 4397 * * 5831 * * 5553 5343 * 4567 193
+ 0 * * * * * * 4569 0 0
+
+T 194 4709 7061 * * * * 3436 6727 2727 5193 * 3228 * 3790 2870 2959 2347 6522 * 5494 194
+ 0 * * * * * * 4409 0 0
+
+Q 195 4293 3461 4187 4209 * 5175 5622 6714 5022 * * 5230 * 1190 6708 6323 2733 * * 5402 195
+ 0 * * * * * * 4287 0 0
+
+M 196 * * * 6263 * * * 3366 * 2521 482 * * * * * * * * * 196
+ 0 * * 0 * * * 3887 0 0
+
+//
+�HHsearch 1.5
+NAME 482b4b12963f255ad7693a467b7af4cc
+FAM
+FILE 482b4b12963f255ad7693a467b7af4cc
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:08:02 2013
+LENG 173 match states, 173 columns in multiple alignment
+FILT 128 out of 686 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEECCCCCCEEEEECCCCCCHHHHCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCHHHHCCCCCCEEEEEEEECCCCCEEEEEECCCCCCE
+EEEECCCCCCHHHCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEEECCCC
+>ss_conf PSIPRED confidence values
+9599996799886089988875222662585468996688689995488752389976884387347246787103689840168735999965887553
+8998567856666426783207896389889995699711699979864599789378997240489833679
+>Consensus
+xxixxyxxxxfxGxxxxxxxxxxxlxxxxxxisSixVxxgxwvxYexxnfxGxxxxlxxGxyxxxxxxxxxndxisSxrxxxxxxxxxixlyexxxfxGx
+xxxxxxdxxxlxxxxxndxisSixVxxGxwvxyexxxfxGxxxxlxxGxyxxxxxxgxxxxxisSirxixxxx
+>482b4b12963f255ad7693a467b7af4cc
+GKITFYEDRGFQGRHYECSSDHSNLQPYFSRCNSIRVDSGCWMIYEQPNFQGPQYFLRRGDYPDYQQWMGLNDSIRSCRLIPHTSSHRLRIYEREDYRGQ
+MVEITEDCSSLHERFHFSEIHSFHVLEGWWVLYEMPNYRGRQYLLRPGDYRRYHEWGAVDARVGSLRRAVDFY
+>gi|229895166|ref|ZP_04510342.1| putative exported protein precursor [Yersinia pestis Pestoides A]gi|229701928|gb|EEO89951.1| putative exported protein precursor [Yersinia pestis Pestoides A]
+-KVCFYMDDDYNGESLCAAqgNSVASIPDKwNDRISSISIPHGLVVtVYEDVDFLGASRSFEADvDLVSDKDLIYLNDNISAFKI-----KKAVCFYGES
+NFTGDSLCLSSgEQFDLYrgnyperkqsHlvNPLNDEVYSIKIPPGMQtTVYEDDDYNGKYFVLTEDYTPdDLLII-RMNNKISSMRVSQD--
+>gi|156384196|ref|XP_001633217.1| predicted protein [Nematostella vectensis]gi|156220284|gb|EDO41154.1| predicted protein [Nematostella vectensis]
+--AVVFEHAYYGGSRKAFDDyGCPDVTALFppgdiGGASS-LIInqTKKWELFTETQYKGLVKTEEPGWYATPEEMKFPNDRLKSIRPR-----------
+---------------------------------------------------------------------------------
+>gi|238798360|ref|ZP_04641843.1| hypothetical protein ymoll0001_1640 [Yersinia mollaretii ATCC 43969]gi|238717818|gb|EEQ09651.1| hypothetical protein ymoll0001_1640 [Yersinia mollaretii ATCC 43969]
+----------------------------------------mknkrillslLIyLSSTEIALAENNLTrnvidrihhdma-------------------vr
+sa----I-----TSPVCFYYENYFqgekfclsspelid-----------fTREnniqihtnkiksisipkssqitvyqgehfftlt--------------
+---------------------DNilq--EAWQKMIA---------gdevteifT-----
+>gi|238754017|ref|ZP_04615376.1| hypothetical protein yruck0001_29380 [Yersinia ruckeri ATCC 29473]gi|238707769|gb|EEQ00128.1| hypothetical protein yruck0001_29380 [Yersinia ruckeri ATCC 29473]
+----------------------------------------mkrknkilllILfISIPEIVFSQYLSVsnnideig-------------------ptyt--
+--L-----DNDEKLSTESFS-----------fNQPeeitll-----------------------------------GSqpg--EQWQEPV----------
+M-----
+>gi|294817978|ref|ZP_06776620.1| Hypothetical protein SCLAV_p1446 [Streptomyces clavuligerus ATCC 27064]gi|326446897|ref|ZP_08221631.1| hypothetical protein SclaA2_37770 [Streptomyces clavuligerus ATCC 27064]gi|294322793|gb|EFG04928.1| Hypothetical protein SCLAV_p1446 [Streptomyces clavuligerus ATCC 27064]
+------------------------------------------TAWEHSNYGGAYLQFFSdingcspttpSHKYDQLPQ-GWNDKISSMR-ipG---SLCG
+GYAFDHIKRYGPMTR-vDGNIPA-mpA--GWNDRVSSLEVLYA---------------------------------------------
+>gi|238754019|ref|ZP_04615378.1| hypothetical protein yruck0001_29400 [Yersinia ruckeri ATCC 29473]gi|238707771|gb|EEQ00130.1| hypothetical protein yruck0001_29400 [Yersinia ruckeri ATCC 29473]
+--TSIYSCGARPHDFISMIDIKEPLQSKg-------KTVAPI-CFYTEDHFQGEHFCLNPPEMIDLYNTEnqNl-NDKLSSIKIPD---GMQVTIYKNDK
+FNAPHYSFTESVNlaGLDKIGMAGQISSIKTFE----------------------------------------------
+>gi|238783059|ref|ZP_04627086.1| hypothetical protein yberc0001_4180 [Yersinia bercovieri ATCC 43970]gi|238716060|gb|EEQ08045.1| hypothetical protein yberc0001_4180 [Yersinia bercovieri ATCC 43970]
+--YQLFIGIAFATENKTkstiygid---------------ntsk----ENTQN-CLYYK------------------yNTQdnipcqnt-----------
+--------------------------SNiid--eTWVPI----------gkdsKSG--------------------------------------------
+--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 4007 * 3026 * * 1354 4182 * * * * 2508 3983 * * 2948 * * * * 1
+ 0 * * * * * * 4945 0 0
+
+K 2 * * * 4631 * 4382 * * 1128 5696 * 5080 * 4044 3570 2298 4134 * * * 2
+ 0 * * * * * * 6189 0 0
+
+I 3 2900 * * * 5489 * * 1509 * 3240 4184 * * * * * 4351 1941 * 5496 3
+ 0 * * * * * * 7162 0 0
+
+T 4 5645 3120 6438 4463 * * 6523 2771 4847 5661 * 6499 * 5485 4263 3522 1895 2820 * 6237 4
+ 0 * * * * * * 7496 0 0
+
+F 5 3651 * * * 2465 * * 2989 * 1501 4933 * * * * 5275 * 2311 * * 5
+ 0 * * * * * * 7496 0 0
+
+Y 6 * 5703 * * 1772 * 6020 5879 * * * * * * * 6822 * * 4968 702 6
+ 0 * * * * * * 7496 0 0
+
+E 7 4876 * 3186 1389 * 5478 * 6704 3671 * 6536 6310 5879 4613 4086 2537 5252 6025 * 6690 7
+ 0 * * * * * * 7496 0 0
+
+D 8 * 5598 2243 2665 * 3872 2355 * 3900 4292 * 4152 * 3591 4003 6245 * * * 6173 8
+ 0 * * * * * * 7496 0 0
+
+R 9 2930 5187 3591 2464 * 5598 5239 3682 4799 * 6643 4722 3433 6189 4503 3719 3434 4970 * 5843 9
+ 0 * * * * * * 7496 0 0
+
+G 10 4678 5446 3167 * 4893 2385 4903 * 5290 * * 1335 * 5365 * 4378 * 5879 * 4137 10
+ 0 * * * * * * 7496 0 0
+
+F 11 * 4700 * 6245 907 * 6020 * * 3592 * * * 5309 5598 5488 * * * 2008 11
+ 0 * * * * * * 7496 0 0
+
+Q 12 4653 * 5236 4231 * 2514 5039 * 3396 5552 4940 4388 5625 2473 3029 3780 4135 6421 6163 * 12
+ 15 6640 * 1000 1000 * * 7577 1001 0
+
+G 13 5569 * * 5464 * 160 5636 * * * * 6122 * 5884 * * 6710 * * * 13
+ 0 * * * * * * 7597 0 0
+
+R 14 3464 * 3588 3036 5362 5931 5195 6014 3179 3972 * 4232 6226 3960 2311 3805 5272 * * 5884 14
+ 0 * * * * * * 7597 0 0
+
+H 15 4177 4273 5931 4227 5636 * 3593 * 3775 4124 4188 4693 6431 5029 4024 1608 * * 6199 4299 15
+ 0 * * * * * * 7597 0 0
+
+Y 16 * * * 6224 2996 6484 4943 2464 3385 2760 4274 * * 4707 4103 5192 4125 3075 * 4594 16
+ 13 * 6760 * * * * 7597 0 0
+
+E 17 4267 3336 2920 1796 * 6415 5422 5055 5668 6238 * * 5447 6002 5487 3337 3367 4487 6221 5950 17
+ 52 4826 * 3168 170 * 0 7591 1360 1000
+
+C 18 4293 6583 * * 1670 * * 2598 * 2109 4849 * * * * 6021 6597 2712 * 6144 18
+ 14 6699 * 1000 1000 * 0 7467 1000 1420
+
+S 19 5586 5957 4375 3517 5166 * * 4469 3731 5376 6205 4149 5195 4739 5075 3321 2092 4729 5337 3415 19
+ 337 2263 * 767 1278 2909 206 7468 2254 1496
+
+S 20 4178 6670 2707 2307 6391 3096 5225 6369 5202 * * 3401 4683 5279 3794 3142 4639 * * * 20
+ 112 3747 * 954 1048 1929 439 7445 1412 1516
+
+D 21 4886 * 1532 3573 6413 4358 5736 4941 5409 6325 * 3213 5115 * * 2993 3688 * * 4365 21
+ 47 4951 * 1000 1000 * 0 7485 1118 1360
+
+H 22 4502 2262 6290 5394 6214 * 6613 3216 5471 4387 5970 4854 * 3231 5083 5107 4520 2067 * 6447 22
+ 0 * * * * * 0 7485 0 1360
+
+S 23 2946 * 3302 3758 * 4225 5523 * 4630 5607 6248 4584 2124 * 3400 2834 5582 * * 5748 23
+ 0 * * * * * 0 7485 0 1360
+
+N 24 * 6474 2047 5360 6689 5599 * 5035 5390 6240 4712 2282 3923 5026 5185 2559 3732 * 6406 * 24
+ 42 5133 * 3000 193 * 0 7615 1093 1360
+
+L 25 4524 * 4960 * 3775 * * 3652 * 930 * 5528 * 6240 * 4924 5257 3038 * 5000 25
+ 0 * * * * * 0 7615 0 1360
+
+Q 26 4544 6261 4480 4122 5399 4014 4980 * 3733 6375 5545 3565 3301 2764 4995 3258 2991 * 6540 6606 26
+ 121 3635 * 3079 182 * 0 7615 1466 1360
+
+P 27 3558 * 2485 4172 6710 4127 4551 * 5442 4470 5326 5138 3422 4071 4885 2718 3836 * 5313 5939 27
+ 131 3897 5655 835 1187 * 0 7641 1420 1360
+
+Y 28 4160 * 4928 4718 3845 2807 5632 5434 3988 2782 6313 3799 6350 4958 3729 4264 6511 4117 5031 4221 28
+ 1799 512 6485 793 1242 2915 205 7633 4959 1533
+
+F 29 5246 6524 5223 4988 1764 5394 5440 5324 * 4050 5330 1698 5457 5158 6579 * 6165 5420 5443 5418 29
+ 226 2784 * 557 1643 2069 393 7541 1994 1671
+
+S 30 6456 * 1412 * 5251 6197 5520 6442 6158 6500 * 1823 4238 5068 * 3174 * 4707 * * 30
+ 111 5338 4342 0 * 2481 285 7555 1074 1618
+
+R 31 * 6627 2479 3388 * 3785 6429 * 2187 * * 5035 6264 4578 2370 4272 4148 * 6402 6331 31
+ 123 3615 * 0 * 1259 781 7472 1521 1893
+
+C 32 2820 3835 * * 4138 * * 1661 5701 4788 4814 * * 6367 * * 4231 2022 * 6298 32
+ 162 3818 4814 1861 464 * 0 7560 1952 1495
+
+N 33 3348 5835 * 5127 6603 4532 4496 6202 6840 6449 * 3855 * 4866 4138 1002 4354 * * 6014 33
+ 0 * * * * 1593 581 7528 0 1772
+
+S 34 * * * * * * * * 5378 * * * 5993 5795 5261 126 * * * * 34
+ 20 * 6179 * * * 0 7791 0 1495
+
+I 35 3076 4257 * * 3562 6280 * 1610 * 3055 4008 * * * * 4557 * 2696 * 5353 35
+ 40 6594 5892 0 * 1596 580 7763 1000 1576
+
+R 36 5155 6216 5207 5448 * * 4517 4813 2052 4236 * 4610 * 3890 1855 4291 5285 5662 6381 4583 36
+ 34 * 5428 * * 0 * 7619 0 1548
+
+V 37 * * * 6989 * * 6309 2389 * 3992 5911 6305 * * * 5956 5824 594 * * 37
+ 24 5911 * 825 1199 695 1388 7900 1180 1071
+
+D 38 6697 * 5266 4219 4765 4653 5622 3907 4696 3364 3845 5690 2656 4252 3811 5642 3316 3257 * 6052 38
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+NAME 4939a1cdd4b26c7d9053b02c16db7e41
+FAM
+FILE 4939a1cdd4b26c7d9053b02c16db7e41
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:30:19 2013
+LENG 90 match states, 90 columns in multiple alignment
+FILT 165 out of 1035 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEEECHHHHHHHC
+>ss_conf PSIPRED confidence values
+988999999999839899999999999999999999769969976874899987357324389998789965976089988889999649
+>Consensus
+mxkxelxxxiaxxxxxsxxxxxxvlxxxxxxixxxLxxgxxVxlxxxGxFxxxxxxxrxxxnpxtxexixixxxxxvxFxpskxlkxxvn
+>4939a1cdd4b26c7d9053b02c16db7e41
+MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK
+>gi|257470064|ref|ZP_05634156.1| hypothetical protein FulcA4_12035 [Fusobacterium ulcerans ATCC 49185]gi|317064288|ref|ZP_07928773.1| predicted protein [Fusobacterium ulcerans ATCC 49185]gi|313689964|gb|EFS26799.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
+MTETEFIRFYKKKIKlRNVKEVQERIDTFWKTIFKALEIDGKVTFKDWGVFEKRKHGARRYILASLGIDNMTENKEVIKFRAGKGFENKIN
+>gi|189465367|ref|ZP_03014152.1| hypothetical protein BACINT_01716 [Bacteroides intestinalis DSM 17393]gi|189437641|gb|EDV06626.1| hypothetical protein BACINT_01716 [Bacteroides intestinalis DSM 17393]
+-ERKEFLNRVHLFTGISRSLLEGAMASFMDELRDCLADGWTVEFGELGYFTPSLNCRREVMEKKelRAASVTLRG---LNFRLGKEFYKEL-
+>gi|157325091|ref|YP_001468516.1| gp136 [Listeria phage A511]gi|66732779|gb|AAY53370.1| gp67 [Listeria phage P100]gi|66733099|gb|AAY52917.1| gp136 [Listeria phage A511]
+-NRTDIAREVAQRTGFYIKDVEQILAERDTVIIDALQGGVtKIKEHKLYQIEVETKPaKKNAWNGLDKVYFSIPEKKIIKFKPLVAVEEVI-
+>gi|261881157|ref|ZP_06007584.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]gi|270332024|gb|EFA42810.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
+LSPRELEEKISHNCTLTASDIRSVLAALNHVMTTELSAGRRLHLSSIGYFSLKVRSIKlEDRKKMRGNHLYA---SGILFRPEASVMSDM-
+>gi|232236|sp|Q01239.1|HCC1_CRYCO RecName: Full=Major basic nuclear protein 1; AltName: Full=Protein p14 alpha/beta chaingi|17961|emb|CAA41349.1| p14 (alpha and beta) [Crypthecodinium cohnii]
+MTKTGLAEAWRRRPSFLRRTAGQSWRAWPRSCAAEVKKTGKLTIPGLVMVKTRKKPATKaGKREMFGKVVLVkaSCQDVVKAYPVKALKT---
+>gi|194337423|ref|YP_002019217.1| Sporulation domain-containing protein [Pelodictyon phaeoclathratiforme BU-1]gi|194309900|gb|ACF44600.1| Sporulation domain protein [Pelodictyon phaeoclathratiforme BU-1]
+MTNHDCVGELAGLLDVERQVASSFLIDFSSAMVAELLAVRKLSLKGLGSFTVTHHPAE--KKNTASAIIYTPPSDRLTFSRQLSGAD---
+>gi|12045213|ref|NP_073024.1| DNA-binding protein HU, [Mycoplasma genitalium G37]gi|255660275|ref|ZP_05405684.1| DNA-binding protein HU, putative [Mycoplasma genitalium G37]gi|1351556|sp|P47595.1|Y353_MYCGE RecName: Full=Uncharacterized protein MG353gi|3844937|gb|AAC71578.1| DNA-binding protein HU, putative [Mycoplasma genitalium G37]gi|166078767|gb|ABY79385.1| DNA-binding protein HU, putative [synthetic Mycoplasma genitalium JCVI-1.0]
+-SRSEINKIIAVATGIKEKKIKEIFKYLNTLLLNELVSRSVCILpENLGKLRITIRNARYQKDMQTGEIRHIPPKPLVRYSPSKTIKET--
+>gi|288802083|ref|ZP_06407524.1| putative non-specific DNA binding protein [Prevotella melaninogenica D18]gi|288335518|gb|EFC73952.1| putative non-specific DNA binding protein [Prevotella melaninogenica D18]
+MSLAQIVKRVEKRSTVSSADVKAVLDALQYEVMEALENGNTVRLGDLGSFRLTMKSqGAPTAAEAKKKGAQLIKQVNVQFTKSTTMRDTL-
+>gi|298373791|ref|ZP_06983780.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058]gi|298274843|gb|EFI16395.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058]
+VTKQDIISNLSQKLDMPEEQVGIFISKLNDLLLKNLPTNKEITIDGVGTFSLVWSTYHKNTKLKDGEPREF---YKLKFEPAESLKSTVN
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 6440 * * * 4927 * * 4538 6627 3043 746 * 6137 5530 6431 * 6289 3003 * * 1
+ 0 * * 2000 415 * * 7639 1000 0
+
+N 2 5220 * 3424 6928 * 4914 6737 6664 3613 6187 * 2191 * * 5967 2988 1497 6838 * * 2
+ 12 6896 * 0 * * * 8064 1012 0
+
+K 3 4407 * 6307 4707 4396 * 7040 5376 1261 3903 6093 5179 6724 5576 2711 5785 3942 5489 * 7008 3
+ 10 * 7118 * * * * 8163 0 0
+
+T 4 3647 * 3150 2736 * 6946 6563 4661 2114 5750 * 4818 5916 3849 4300 3083 4809 5391 * * 4
+ 0 * * * * 0 * 8272 0 1000
+
+Q 5 4503 * 2279 1380 7344 5249 5179 6270 4087 * 6040 7599 * 3696 4206 4974 5173 * 6340 6587 5
+ 10 7154 * 2000 415 * * 8266 1000 0
+
+L 6 6169 7047 * * 2593 * * 2184 7303 1172 3925 * * * * 7334 * 3825 * * 6
+ 0 * * * * * * 8322 0 0
+
+I 7 2067 4184 * 5207 6495 * * 1778 7288 3625 5850 6167 * * 7495 5194 4393 2495 * * 7
+ 15 7347 7881 2000 415 * * 8328 1001 0
+
+D 8 3733 * 3285 2048 * 7417 5036 6156 2483 6937 6243 4738 * 4573 2918 3970 4796 6297 * 7527 8
+ 0 * * 0 * 0 * 8328 1000 1000
+
+V 9 3729 * 4583 2775 6603 6354 4879 3974 3669 3225 5349 5543 * 4016 2493 4887 4492 5728 * 4365 9
+ 9 7338 * 2585 263 * * 8328 1021 0
+
+I 10 4315 * * * 6182 * 7338 1582 6937 1945 4990 * * * * * 5804 2210 * 3998 10
+ 19 7314 7176 0 * * * 8328 1012 0
+
+A 11 1293 * * 3665 5766 7310 6502 7270 4176 6313 6311 7677 7343 4862 5276 2160 4345 5308 7284 6101 11
+ 0 * * * * 0 * 8315 0 1016
+
+E 12 3952 * 5142 2123 * 5702 4860 5876 2800 5395 6494 4134 7736 3323 3096 3534 4724 6165 * 6400 12
+ 106 3937 7452 1657 550 * * 8328 1824 0
+
+K 13 4065 7569 6510 3119 5573 5062 4502 4168 2858 4794 5501 3471 7441 4181 2246 4353 6175 6107 * 5439 13
+ 27 5758 * 0 * * 0 8328 1254 1000
+
+A 14 4417 4279 * * * 4889 4483 6187 6186 2940 4909 4244 6250 4801 5293 2258 1992 5177 * 5901 14
+ 28 6133 7725 321 2327 * 0 8348 1191 1000
+
+E 15 4588 6977 4135 4042 7159 1594 5366 * 4102 * * 3579 5420 5583 5490 2781 3102 * * * 15
+ 80 4213 * 1162 855 1087 918 8353 1741 1059
+
+L 16 5224 5730 * 7228 3121 6767 6868 2834 4785 1733 4074 7018 6097 7268 * 5674 4542 2775 * 4611 16
+ 34 5433 * 0 * 0 * 8348 1349 1000
+
+S 17 5904 * 4377 4539 6293 4856 4598 * 4424 6480 * 4562 3403 * 5997 1674 1920 * * 6004 17
+ 10 7229 * 2000 415 * * 8346 1000 0
+
+K 18 4907 * * 2583 * 6376 5984 4432 2035 4920 * 4855 4407 3446 2754 4089 6376 4775 7379 6221 18
+ 0 * * * * * * 8346 0 0
+
+T 19 2663 * 5168 3299 6013 2576 6339 6738 2097 7507 7293 5250 5732 5333 5414 3806 4706 4254 * 7236 19
+ 7 7737 * 1000 1000 * * 8346 1000 0
+
+Q 20 4308 7585 1704 2607 7492 6038 5843 5134 4126 5801 5243 5370 * 3130 5289 5807 4256 3819 * * 20
+ 0 * * * * * * 8346 0 0
+
+A 21 1719 4817 * * * * * 2532 * 3940 * * * * * 4634 3682 1746 7288 * 21
+ 0 * * * * * * 8346 0 0
+
+K 22 4315 * 4943 2528 7172 4757 6335 4875 2465 3748 7490 5179 6954 5019 2882 3805 4403 4595 * 5061 22
+ 0 * * * * * * 8346 0 0
+
+A 23 2796 7379 4522 2735 7227 3278 4856 5464 3204 5133 5157 4364 5866 3856 3854 4006 5035 5546 * 7337 23
+ 0 * * * * * * 8346 0 0
+
+A 24 3077 5328 5691 7169 3524 * 6756 2728 6138 3166 6861 7551 * 6911 7231 5433 5158 1498 5903 7224 24
+ 0 * * * * * * 8346 0 0
+
+L 25 5431 * * * 3441 6768 * 2594 * 1447 4536 * * * * * 6653 1909 6480 6319 25
+ 12 6954 * 2807 222 * * 8346 1027 0
+
+E 26 3993 7518 1868 2608 * 4981 5855 4864 3426 7024 5381 3837 * 4360 4003 5731 3658 * * 7235 26
+ 0 * * * * * * 8346 0 0
+
+S 27 2150 7261 3693 2995 * 3460 5763 5116 7148 3990 5044 4570 * 5770 4522 3581 3598 4348 * 7013 27
+ 0 * * * * * * 8346 0 0
+
+T 28 4625 * * * 1945 * * 2906 * 1567 4311 * * * 6511 * 5711 2927 * 5880 28
+ 0 * * * * * * 8346 0 0
+
+L 29 3898 7028 5716 4125 2786 4592 * 3763 6285 2654 4182 5157 7283 4847 4632 5036 3875 3070 5583 6172 29
+ 0 * * * * * * 8346 0 0
+
+A 30 3793 * 2180 2205 7187 4160 4878 * 3550 5734 * 4076 * 5055 4828 3722 4168 7164 * 5248 30
+ 12 6954 * 1585 585 * * 8346 1027 0
+
+A 31 3181 6299 7416 2867 5016 4257 * 3829 4700 2953 5409 6627 * 7547 6687 4006 3812 2522 7132 4336 31
+ 0 * * * * * * 8346 0 0
+
+I 32 5755 * * * 5420 * * 1390 * 2048 2808 * * * 6738 7132 5647 2684 * * 32
+ 0 * * * * * * 8346 0 0
+
+T 33 2948 6759 6970 3743 7231 4084 * 3611 2637 3920 6213 5979 6213 4782 4121 3416 4358 3254 * 5622 33
+ 0 * * * * * * 8346 0 0
+
+E 34 3369 7181 2486 1974 6970 6327 5462 7718 3508 6675 6756 3967 * 4167 3752 3934 4769 * * 6326 34
+ 7 * 7604 * * * * 8346 0 0
+
+S 35 2141 4738 6242 2832 * 4441 4030 6908 5767 3868 6454 5160 * 4081 5678 3995 3847 3781 * 4137 35
+ 0 * * * * 0 * 8346 0 1000
+
+L 36 5946 * * * 4726 * * 3320 * 509 4310 * * 7465 * * 8287 3575 * * 36
+ 9 7333 * 0 * * * 8346 1002 0
+
+K 37 2795 5936 4261 3405 * 3752 6239 4735 3045 3137 5732 6148 6363 4345 5060 2989 6437 4053 * 6473 37
+ 9 7283 * 1585 585 * * 8346 1001 0
+
+E 38 3678 * 2628 2671 * 5808 6187 6365 3118 4960 5255 3415 * 4291 3622 3707 3802 * * 6431 38
+ 48 5571 6421 2064 394 * * 8346 1218 0
+
+G 39 4873 7005 4345 3798 * 733 5204 * 4880 * * 3937 * 7394 4779 5218 5229 * * 6246 39
+ 17 7591 7318 1400 687 1615 570 8313 1170 1248
+
+D 40 6483 7152 4007 2202 7243 3182 4081 * 2836 * * 3130 6359 4804 3302 5235 6950 5247 * 4017 40
+ 47 4968 * 793 1242 914 1091 8332 1416 1229
+
+A 41 5546 7172 4675 2960 7003 5395 5710 3415 3152 * * 4038 6559 5760 2574 2297 4177 5560 * 6759 41
+ 9 7282 * 1000 1000 * 0 8330 1006 1061
+
+V 42 7316 6150 * * 4028 * * 2597 * 3150 * * * * * * 6635 666 * * 42
+ 0 * * * * 0 * 8330 0 1061
+
+Q 43 5218 5552 4166 2991 6444 6399 4129 4954 2873 5823 7276 3936 * 4694 2785 3664 3109 4891 * 5686 43
+ 17 6432 * 1297 754 * * 8346 1080 0
+
+L 44 * 6670 * 6507 3340 * * 1805 * 1073 7044 * * * * * * 3169 * * 44
+ 20 6176 * 0 * 0 * 8343 1184 1000
+
+V 45 5643 * 3969 4082 6173 2365 4768 * 3362 6063 6044 4705 2613 4726 3185 4327 4436 4667 * * 45
+ 0 * * * * 0 * 8344 0 1000
+
+G 46 7337 7325 2643 3497 * 1212 * 6751 4091 6461 * 2951 6296 6379 5418 4852 6971 * * 6986 46
+ 0 * * * * * * 8346 0 0
+
+F 47 * * * * 1258 * * 3154 7014 1626 5787 * 6751 * 7160 * * 3816 5323 7058 47
+ 0 * * * * * * 8346 0 0
+
+G 48 4818 5929 * * 5053 199 * 6876 6738 7566 7316 7283 * * * * * * * 6511 48
+ 0 * * * * * * 8346 0 0
+
+T 49 4810 * 7264 * 7415 5798 5323 4213 3104 4360 6907 5692 * 5148 3919 2873 1663 4163 7098 4243 49
+ 0 * * * * * * 8346 0 0
+
+F 50 * 6751 * * 484 * * 4046 * 2680 7277 * * * * * * 5370 5747 6676 50
+ 14 * 6732 * * * * 8346 0 0
+
+K 51 7537 6306 6319 2827 6612 5431 5801 4084 3041 5970 8027 6312 * 4219 2845 2368 3214 5632 6306 4750 51
+ 8 7496 * 1000 1000 0 * 8313 1000 1036
+
+V 52 4714 7820 * * 7175 6346 7891 2782 4971 2412 4360 7368 3260 7328 5558 4954 3522 1983 * 6644 52
+ 7 * 7695 * * * * 8327 0 0
+
+N 53 3747 6060 7175 4706 7334 4477 5041 4725 2317 5554 * 5353 * 5925 3132 2781 3744 3000 7268 5844 53
+ 63 4540 * 1714 525 * 0 8327 1526 1000
+
+H 54 3496 * 4184 3109 3997 6227 4153 3668 3862 2973 6132 7318 5249 5480 5415 5140 3513 3575 7157 4887 54
+ 27 7558 6241 1585 585 0 * 8327 1000 1000
+
+R 55 5393 7249 * 4675 6988 3625 6321 6550 2163 5611 7305 5313 6151 4100 2223 4428 3143 3703 * 5635 55
+ 98 6344 4228 1034 967 * 0 8311 1094 1106
+
+A 56 3095 5637 4799 4611 7139 4705 6016 6886 2164 5154 * 4814 3063 6836 4150 2657 4117 5854 * 6408 56
+ 120 4504 4802 203 2926 436 1938 8246 1476 1920
+
+E 57 2285 7446 5865 2627 6968 3609 * 6437 3639 5336 * 7669 2759 6233 4128 3277 5127 4942 * 5954 57
+ 91 5221 4866 1275 769 991 1009 8310 1253 1686
+
+R 58 5585 5739 5511 4502 6608 4180 5079 * 2160 7447 * 6151 7044 5067 1256 4210 5255 * 6554 6843 58
+ 189 4414 3725 187 3040 2071 392 8275 1572 1758
+
+T 59 5063 * 7141 3348 4684 5492 6990 4426 2646 4170 4272 4637 3940 4345 3970 4283 3255 3464 * 5874 59
+ 24 5949 * 0 * 649 1464 8154 1142 2507
+
+G 60 2892 * 5751 4517 6832 1716 7040 4032 6979 5865 5474 5137 6947 5439 4750 4128 4468 2838 * 4856 60
+ 20 * 6208 0 * 900 1108 8210 1061 1666
+
+R 61 4320 7137 5056 4310 5457 6926 5058 3925 3487 4844 5508 7294 5483 6244 1873 4782 3254 3583 6478 4693 61
+ 222 4705 3259 700 1379 * 0 8288 1429 1445
+
+N 62 5029 * 2819 4718 6773 6544 4679 6657 4658 6433 * 927 7040 6078 5509 4313 4839 6147 * * 62
+ 41 6067 6252 2224 347 3774 110 8192 1193 2757
+
+P 63 4966 * 6653 3224 4816 5192 7320 4276 4307 4210 6050 7107 1014 * 4780 6517 4854 5718 * 7114 63
+ 74 4331 * 1000 1000 1084 921 8200 1525 2769
+
+Q 64 4279 7290 4487 3572 4195 4144 6161 6418 2250 3995 6083 5820 7085 3719 2895 4115 4735 4105 * * 64
+ 129 3545 * 881 1129 1018 982 8250 2131 1944
+
+T 65 4497 5998 3453 5983 6231 5840 7242 7126 3561 5915 * 4105 6705 7324 4384 4640 946 7349 * * 65
+ 47 5571 6482 707 1369 692 1393 8272 1196 1591
+
+G 66 3070 * 7191 4034 6745 1213 7016 6252 2862 6299 6388 4979 5657 5720 4326 4784 6178 5726 * * 66
+ 39 5611 7305 1000 1000 1463 650 8323 1193 1323
+
+K 67 4527 * 5742 1348 7222 4074 5247 7465 2548 * 7267 6558 7233 3758 4612 4935 4231 4277 * * 67
+ 24 6755 7116 606 1544 * 0 8312 1046 1261
+
+E 68 5398 7033 4286 3039 6997 7128 7014 5270 3465 4931 4273 4542 3528 5854 3503 3002 2899 4365 5773 6464 68
+ 50 6129 5673 0 * * 0 8304 1116 1358
+
+I 69 5627 5614 * 5871 3660 * 7234 1950 4914 3547 3279 6876 * 6957 5087 5469 4782 2050 6728 5639 69
+ 20 6192 * 507 1754 1254 784 8292 1106 1610
+
+K 70 4917 7303 4506 3502 4967 6740 4790 4224 2777 5207 4729 4907 6319 3935 4003 4256 2818 3878 6897 4554 70
+ 172 5602 3447 1742 513 1464 649 8310 1234 1402
+
+I 71 4568 7365 * 6910 3789 * * 1540 4533 2962 4958 6896 5957 5895 6640 4595 4826 2466 * 6096 71
+ 200 4834 3402 1585 585 3274 157 8201 1361 2410
+
+A 72 4274 * 5438 3641 6873 6293 * 5687 2816 7293 * 4239 1250 4825 4999 4238 5753 5644 6779 6020 72
+ 130 4286 4830 1000 1000 * 0 8059 1460 3368
+
+A 73 1745 6714 5570 2840 6478 3647 * * 3944 * * 4675 2363 * 5641 3821 4288 * * * 73
+ 93 5585 4596 1242 793 737 1322 8013 1275 3674
+
+A 74 4399 7037 7111 5442 5441 4219 3151 5756 1853 5944 * 5183 * 5966 2195 4095 4394 5004 * 6088 74
+ 35 * 5389 * * 502 1768 8191 0 2509
+
+N 75 3498 6968 4269 7158 * 6199 5162 6798 1881 4187 7143 3996 4244 5064 3173 5028 3770 4476 7479 4328 75
+ 0 * * * * 2234 345 8261 0 1675
+
+V 76 5426 * 5109 6587 * 4006 5100 3676 2527 5142 7177 4363 * 6427 2759 4296 3354 2401 * 6270 76
+ 8 7451 * 1000 1000 0 * 8289 1000 1518
+
+P 77 5837 6961 * * 5378 * 6871 2039 * 3514 5503 * 3245 * * * 7195 1069 * * 77
+ 0 * * * * * * 8334 0 0
+
+A 78 4961 6664 7227 7285 7536 5859 4362 5116 1662 4277 7215 3643 * 5776 2706 4671 4335 3417 * 4776 78
+ 0 * * * * * * 8334 0 0
+
+F 79 5462 * * * 359 * * * * 3915 7078 * * * * * 6846 4385 5441 4489 79
+ 0 * * * * * * 8334 0 0
+
+V 80 6210 7211 * 5984 6321 * 5740 5203 1575 5938 * 6368 * 5136 2020 4286 2749 4751 * 5095 80
+ 0 * * * * * * 8332 0 0
+
+S 81 2398 5901 * * 4570 * 7476 4183 7142 6145 6377 * 1013 6203 * 4610 5039 4015 6039 * 81
+ 0 * * * * * * 8332 0 0
+
+G 82 3645 6208 3896 4617 * 2564 * * 5093 4637 * 5099 6328 * 4817 1246 5150 5666 * 6235 82
+ 15 * 6618 * * * * 8319 0 0
+
+K 83 3709 * 5737 4228 7130 5093 * 7232 1205 6738 5868 5353 3874 5080 3900 3421 5189 5102 * 6823 83
+ 0 * * * * 0 * 8272 0 1056
+
+A 84 3338 * 4500 2525 * 4507 5989 5721 2992 5087 4951 4788 6026 4359 4620 2943 3694 4020 * 7144 84
+ 0 * * * * * * 8312 0 0
+
+L 85 6309 * * * 2806 * * 3317 7162 927 4615 * * * 5772 * * 3134 5880 5567 85
+ 8 7455 * 2000 415 * * 8312 1000 0
+
+K 86 4840 * 7093 5190 5603 6590 * 4675 1218 3937 6990 7163 6888 5680 2264 4899 4609 4921 * 7265 86
+ 0 * * * * * * 8267 0 0
+
+D 87 4161 * 2566 2406 * 4697 6868 7327 2461 5170 * 4201 7168 4216 3096 4943 4995 6055 * 6282 87
+ 38 5256 * 3062 184 * * 8266 1377 0
+
+A 88 1959 * 7209 3738 4915 5429 6143 5571 2873 3329 3807 6790 6781 4810 3605 5149 4106 4929 * 7173 88
+ 32 6178 6990 0 * * * 8167 1061 0
+
+V 89 4951 5823 * * 6715 * * 2088 6367 1939 3714 * * * 6486 6666 5100 1709 * * 89
+ 99 3920 * 0 * 0 * 7836 1202 1000
+
+K 90 3506 * 3751 3742 * 5776 * * 3180 * * 987 * 4321 * 4488 4831 * * * 90
+ 0 * * 0 * * * 6868 0 0
+
+//
+�HHsearch 1.5
+NAME 497673b84b7766fe2450fe095360affb
+FAM
+FILE 497673b84b7766fe2450fe095360affb
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:23:20 2013
+LENG 182 match states, 182 columns in multiple alignment
+FILT 149 out of 540 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECHHHH
+HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9974689999999989999997488981226657899999568413314689999999999987998376652555533354799888899999458699
+9999999986443302455774446898678751078764846110456895565499996009889999999984993359
+>Consensus
+xxxxxxlxxxYxxxvxxxLxxkxxxxnxxxiPkixKIvinxxxxxxxxdxxxlxxaxxxLxxItGQkpxxtxakksiaxfkiRkgxxiGxkvTLRgxxmy
+xFLxklixxvlPrirdfxgixxxsfdxxGnxsfGixxxxxFPEixxdxxxxxxGxxItivtxaxxxxeaxxLlsxxgxPfxx
+>497673b84b7766fe2450fe095360affb
+MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMW
+IFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK
+>gi|74325185|ref|YP_316605.1| ribosomal protein L5 [Thalassiosira pseudonana]gi|74100251|gb|AAZ99412.1| ribosomal protein L5 [Thalassiosira pseudonana]
+-----FFNSYLNNVVKHDLINKFFYTNLKQIPKLETIVLNFGYQ--NSNFKHLISGLLALELLSSKKSRLTRSKHLNVFLKIKKGNPVGCKIVLKKTTMH
+VFYLKLITSVFPKIKHNKTAQS-QQNVKsvKSISIIIKNPLLFLELEsqYQFFKDIPKLDITILTDSKSQNEIFFLLKSVKFFI--
+>gi|300706059|ref|XP_002995340.1| hypothetical protein NCER_101808 [Nosema ceranae BRL01]gi|239604376|gb|EEQ81669.1| hypothetical protein NCER_101808 [Nosema ceranae BRL01]
+-------------------------KiNPMREIKIKKLSIVINVGgGSSN---KLNNAAKVLKQLTDQDCLFSKARYTLRNFGIRRNEKISVHVNISGEK
+AMEVLKKAL-----KVREYE-LSKSCFNATGCFGLGINEHIDL-GMKYDPDIGIFGMNFYVDLK--------------------
+>gi|15150728|ref|NP_150394.1| ribosomal protein L5 [Pylaiella littoralis]gi|15147734|emb|CAC50835.1| ribosomal protein L5 [Pylaiella littoralis]
+------LKNHYHDVIQKDLILSENTSTVAMLPALKKIDLA--LGGSHSDENFVIASLGSLNILTGQKPYLTQQKPV---GQKSSChkEAVGGKLTLRGSS
+MFNFLHKLLFGVFPHMRQFEGLRAPL--HKDLYCFVIKDIFSFQELVplFIYFESVGSLQCQFYFTTKSESEVVVLGNSLQL----
+>gi|321268737|gb|ADW79186.1| ribosomal protein L5 [Cyanophora paradoxa]
+-----RLQYHINHIVNYELISRLNINNIYKIPKKESIIIQSSQKKLVHDQTLLYPLYGCFELMSFQRPVFSISKNAISAYQLRKKQVLGCKTTLRNKYAL
+IFLDKLIYLYFPKVKALNLYKYKLNQNNINFAFGLNSIIPFEDIEnqYSKIDMNFGINVFINfvKYQNiNNQNILLYLSSIQFPIA-
+>gi|30351950|emb|CAD62688.1| mitochondrial ribosomal protein L5 [Zea mays]gi|194703766|gb|ACF85967.1| unknown [Zea mays]gi|195635755|gb|ACG37346.1| mitochondrial 60S ribosomal protein L5 [Zea mays]
+--MMLPLHIHYEDVLRQDLLLKQNHANIMQVPGLFEVKL---APKAGSDL-KIPIGKMAMEVLSGQRFKeakidpFAKARKSSRTnpfIGADKdGStVFA
+QPTVLRGHAMYNFLVRMLTVMsmLNSRADIRENT-------VKFFMETEFCEFSPELEdhFEIFEHIRGFNVTIVTSANTKDETSLLWSGFM-----
+>gi|110225686|ref|YP_665691.1| ribosomal protein L5 [Mesostigma viride]gi|17222557|gb|AAL36730.1|AF353999_10 ribosomal protein L5 [Mesostigma viride]
+---------------------KQNSKNIERNSSLEKLIIRFPFNTMKSER-DFLLHWTALGIISGQKPKIVFSTTADAKEKIKKGDPLFCFVTLRNSKMI
+EFLNKFYHAVFPILN-MEKNSFRFFKEETKqffgYSFFWEQGLLFPELEdrFELFKSSFEFQLFVKAEKKNN--SDIFLTALNIPL--
+>gi|323398663|ref|YP_004222738.1| ribosomal protein L5 [Glaucocystis nostochinearum]gi|321401356|gb|ADW83110.1| ribosomal protein L5 [Glaucocystis nostochinearum]
+-------KEYNDNVLKYDFSLRYFCPNNYYSLRIKKINIQILLSEILINENLFFFIISILKIISYQHSLPIFSKKAIANFSLKKHMIIGAIVCLRKLSLL
+CFISKFQNLLnqnLDLSKNYT-YK-EAENNLLNITIGLKNISVFPEIEsqFSKISRKIGADIMFTF---------------------
+>gi|49147184|ref|YP_025777.1| ribosomal protein L5 [Pseudendoclonium akinetum]gi|33439199|gb|AAQ18736.1| ribosomal protein L5 [Pseudendoclonium akinetum]
+----------------------------LNSYGLEKIILHSSSGKLLQAPSSSTTIDLAFSTVGCQTPTKVYSRRSIAGFKLSKSALLGAKATLRNLAKY
+DFFYKFYFLGagetnvtaMtrqSRITlgeqklaaPY-GLQ--SIQQQPNlstTSLAVKNVFLFNELDsldYDVFSNMAGFEIVFI---------------
+-------
+>gi|200004035|ref|YP_002221370.1| hypothetical protein BlDMPOM_p17 [Blastocystis sp. DMP/02-328]gi|198385459|gb|ACH86053.1| hypothetical protein [Blastocystis sp. DMP/02-328]
+----------YFQQINHNRYLKMLYKTPYQISNIDRISMFIRFDTQLNNKFIVLCSFflfKTTLFKTGHYIVINKKT----------KQILGLNYYFTKQ
+LIINFFNIFLLNLLiqPEIQN--SINLTSFDSDANFNFTIINSncYFFERILinqfYKRALQSCNFHITIKFKKNqNIYDHILLLNFFKFYF--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1453 0 0
+
+P 2 1567 * * * * * * * * * * * 594 * * * * * * * 2
+ 594 * 1567 * * * * 1743 0 0
+
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+ 0 * * * * * 0 2252 0 1029
+
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+
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+ 80 4216 * 1103 904 0 * 3294 1020 1029
+
+A 6 4298 * 4187 5374 3482 4334 6412 * 4786 * * 4162 3873 * 1330 3678 4393 5269 6717 * 6
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+
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+
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+ 24 * 5952 0 * * * 5405 1015 0
+
+K 10 4954 * 7155 4104 3825 * 1666 6068 3580 2565 6998 * * 5814 5255 6239 5300 * 6020 2800 10
+ 21 7087 7114 0 * 0 * 5503 1000 1012
+
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+ 0 * * * * * 0 5676 0 1000
+
+Y 12 5753 * 4472 2759 4690 * 3414 4447 2316 3641 * 3896 5987 5137 3546 * 4619 6231 5605 4118 12
+ 26 6111 8319 1000 1000 0 * 5676 1012 1000
+
+E 13 5752 * 2903 2184 * 5776 4400 * 3137 7245 * 1850 * 3283 6265 5618 5142 * * * 13
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+K 36 5824 8046 * 3902 * 5923 * * 502 * * 6693 * 5528 3805 3983 5456 * * * 36
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+V 37 5693 * * * * 6212 * 767 * 3168 6412 * * * * * * 1964 * * 37
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+
+V 38 6669 4174 6316 5584 7819 6747 4983 2717 5994 6467 * 5255 * 6144 5504 3643 2800 1355 * * 38
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+I 39 * 5731 * * 6443 * * 1741 * 1541 5273 * * * * * * 1732 * * 39
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+
+N 40 4765 6454 6448 6729 4703 * 3068 6832 6183 * * 1141 * 4280 4681 3010 4881 6961 * 4617 40
+ 89 * 4065 0 * 1289 759 6268 1200 1549
+
+Q 41 4976 3269 * * 3749 7080 * 1694 * 5910 2952 * * 8021 3951 2899 3768 4595 * 6596 41
+ 0 * * * * * 0 6109 0 1659
+
+G 42 6670 4153 5848 * 4459 1162 5569 * 5923 6072 4447 3808 5870 * 5525 3131 4689 * 6058 4388 42
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+
+L 43 4174 5132 6952 * 3467 * 5695 3094 * 2718 5676 4969 7053 6300 * 4095 4044 1618 * 6310 43
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+G 44 6015 * 4606 5016 * 1193 * * 2158 6706 * 5150 3247 6308 4128 4846 8210 * * * 44
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+E 45 4110 * 3946 1846 5308 3983 5001 5511 2693 5171 7707 4361 7119 4866 4930 3908 4001 6660 * 6904 45
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+A 46 1520 * 5163 4167 6552 4250 6099 4368 4682 4283 5994 7896 7108 5623 6754 2419 4875 4401 * 5253 46
+ 54 5930 5621 705 1371 636 1488 6352 1069 1222
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+K 47 2723 6406 * 5617 * 2548 5957 3523 4245 3048 * 4069 4539 6336 4683 3160 6176 3490 * * 47
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+
+E 48 3122 * 3102 3060 * 4380 4616 5172 4129 6917 6192 3558 6635 3281 5334 3068 3762 5891 * 5597 48
+ 406 5322 2181 2122 377 2268 336 6315 1138 1271
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+D 49 5259 * 1265 3013 * * 6498 7672 6183 * * 1939 * 6667 5231 3811 5377 6427 * * 49
+ 18 * 6304 * * 3463 137 5956 0 2525
+
+A 50 4039 * 6152 4541 4122 * 6591 6586 1465 4750 5070 5988 2938 5025 4441 2874 6008 * * * 50
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+R 51 4361 * 5343 4581 4674 5309 * 7595 1382 4460 * 3047 6023 4670 5256 3856 4530 5164 5696 5334 51
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+I 52 4061 * 6031 4771 5036 6070 4450 3696 3560 3004 7262 3816 5929 4630 3087 3593 5424 3602 7167 3989 52
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+L 53 5609 * * * 4401 6734 7528 2492 6286 1108 4911 5988 6701 7015 * 5575 6693 2640 * 7496 53
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+A 56 1348 4246 * * 5769 3793 4887 3726 * 4444 5963 4917 5502 6952 * 3076 4097 4687 * 6198 56
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+A 57 3212 * 5801 4145 2982 5062 * 2860 3614 2810 5147 * * 6343 4286 4280 7940 3108 6028 5603 57
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+L 60 5855 6782 * * 3832 * * 3523 6200 688 3284 * * * 6087 6284 6016 4776 * * 60
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+A 61 3330 * * 1762 5209 4596 * * 3580 4097 7849 4938 6087 3076 3824 3766 4051 7073 * 6248 61
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+
+L 62 3380 5600 7147 4719 4222 * * 3037 4364 2080 4660 5979 * 3085 6173 3733 4634 4022 * 6202 62
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+I 63 * * 8039 * 6936 * * 706 5065 2058 4567 * 5486 * * * * 5216 6198 * 63
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+
+T 64 3389 5408 * * 5977 5521 * 6984 * * * 6132 * * 5486 1919 953 5807 * * 64
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+G 65 5431 6405 5353 * 6296 438 7140 * 5821 6658 * 3651 * 6455 * 4975 6020 * 8039 6245 65
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+K 67 5500 6130 7061 4951 4413 6796 5678 * 1225 5752 * 6562 5508 3622 2520 * 3635 6802 * 5358 67
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+P 68 2840 5922 6579 5263 4882 6288 * 4737 * 7266 * * 718 * * 4537 6206 4261 * * 68
+ 62 5082 6288 3734 113 * 0 6391 1140 1019
+
+A 69 5744 5361 * 4546 7266 7377 * 2844 2904 3516 5500 * * 3668 5863 4718 3607 2020 6433 4466 69
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+
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+
+T 71 4672 5892 * * 7156 5341 5465 2986 8014 4063 * 4402 * * 3927 3625 1256 3734 * 6401 71
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+
+R 72 6574 6394 * 4318 3667 7261 * 5004 1689 6401 5715 5612 * 4141 2002 7087 4979 5714 6770 3722 72
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+A 73 895 * * * * 5131 * 5673 5158 * * 6182 * 6295 4403 2055 4007 * * 6739 73
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+
+K 74 * * * 4856 6204 4554 6057 * 917 * * * 6610 6638 2151 4159 4235 * * 6604 74
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+K 75 5651 6674 5479 6110 * 5686 5200 6692 1084 5985 7597 3894 4742 5206 3651 3739 4518 5695 * 4821 75
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+S 76 2600 * 5344 * 6186 5299 7035 * 5659 6250 * 2985 4476 * 6049 1415 2679 6225 * * 76
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+I 77 4853 * 5031 * * 5293 * 1227 6130 4728 7358 3435 * 7407 * 4095 * 1904 * * 77
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+
+S 78 1312 * * * * 5124 5828 4809 3979 5974 6848 7208 3990 6271 3501 2360 6490 4316 * * 78
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+
+N 79 3544 * 4385 4960 4554 2468 * 6689 5403 * 6822 2402 5673 4439 6538 2936 2535 * * * 79
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+
+F 80 * * * 5993 593 6212 * 6340 6199 4166 * * * 5343 * 6169 * 6546 2611 6253 80
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+
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+
+M 86 5029 * 2984 2756 5962 * 6632 5868 4161 5061 2015 5068 * 3041 4754 4227 6395 5605 8463 4590 86
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+I 88 4935 4956 * * 4757 * 6646 1359 * 2525 4641 5218 * * * 5479 7524 2187 6632 * 88
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+
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+
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+
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+
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+ 95 6718 4201 0 * 3246 161 6315 1010 1335
+
+R 118 4770 * 5340 3501 6808 5421 5904 6650 2196 * * 3716 5709 3687 1857 5037 3540 7000 * * 118
+ 276 * 2523 * * 375 2129 6225 0 1615
+
+G 119 * * 6634 4266 * 579 * * 3396 6031 * 6244 6007 6248 6509 5134 4317 * * 5216 119
+ 34 * 5426 * * 205 2919 6122 0 2070
+
+L 120 4728 * * 6158 3631 7244 * 1856 * 1945 * 3605 * * 6112 5377 7659 2537 * 5211 120
+ 0 * * * * 2461 289 6368 0 1231
+
+N 121 4918 6091 * 6155 6660 5943 6377 6742 2373 * * 3099 3035 4778 3374 1931 4976 7246 * 5295 121
+ 158 5621 3582 1000 1000 * 0 6367 1078 1180
+
+P 122 2952 7392 5466 3899 4035 3440 6712 3547 4460 3069 * 4088 3034 * 4165 4682 4382 5748 * 5635 122
+ 204 6284 3073 3322 152 2394 305 6219 1018 1719
+
+N 123 4546 * 6596 4409 6998 6607 * 6047 2659 4979 * 4022 3884 6428 2763 2137 3126 6321 * 4882 123
+ 16 * 6465 * * 1559 598 6023 0 2172
+
+S 124 2622 4660 * * 5774 3210 * * 4957 4624 * 3873 5125 3684 7492 1457 4196 * * * 124
+ 89 * 4069 1503 628 1552 602 6144 1200 1840
+
+F 125 5148 * * 5950 871 3049 * 3828 6526 4148 * 4410 6668 6073 * 5365 5783 4782 * * 125
+ 50 4866 * 1930 439 4647 59 6049 1130 1859
+
+D 126 5926 * 685 6411 * 7262 5989 * 4483 6676 * 3361 7134 5069 7293 3182 5487 * * * 126
+ 162 4589 3954 2217 349 1248 788 6041 1206 1825
+
+G 127 4158 5274 5612 3810 * 1944 4393 6773 3764 5727 6414 3231 5465 4567 3970 3308 4626 5482 7249 * 127
+ 47 * 4968 * * 2095 385 6135 0 1921
+
+R 128 4773 * 4903 3747 4691 5403 4170 * 3497 4747 * 2702 * 3362 3085 2883 3977 5682 * 5352 128
+ 103 4220 6018 1963 428 1555 600 6140 1230 1870
+
+G 129 5453 6561 5230 * * 549 * 6137 6169 6079 * 3804 4813 * * 4462 5885 5046 * 6189 129
+ 0 * * 3170 170 0 * 6227 1000 1640
+
+N 130 6777 4793 * 6029 * 5946 5444 4404 5220 6290 6216 758 * 5158 6220 3650 4482 4547 * * 130
+ 55 4746 * 1500 629 * * 6374 1178 0
+
+Y 131 7105 6173 * * 2079 * * 2717 6347 2551 5731 * * * * * 6389 3367 * 1839 131
+ 0 * * * * * * 6374 0 0
+
+N 132 3349 4499 4900 * 5533 3583 5092 * 6216 6684 * 2699 * 5629 * 1667 2807 6136 7512 6052 132
+ 0 * * * * * * 6374 0 0
+
+L 133 6078 * * * 1063 * * 2745 * 2075 3929 * * * * * 8045 6833 5954 5290 133
+ 0 * * * * * * 6374 0 0
+
+G 134 5225 * * 4876 6030 541 * 6296 5796 * * 5381 7087 5959 * 4030 5415 3876 7512 * 134
+ 11 * 7002 * * * * 6374 0 0
+
+L 135 6071 * * * 4582 * * 1362 6681 1779 4873 * 6402 * * * 4094 2907 6026 * 135
+ 0 * * * * * 0 6357 0 1019
+
+R 136 5002 * 4068 2946 6836 7258 7213 5099 1708 6344 * 3531 4002 6349 4163 3275 3606 * * 7084 136
+ 120 4444 4875 1000 1000 * 0 6357 1215 1019
+
+E 137 4088 * 1938 1640 4820 5870 * * * 6454 * 3031 3990 4560 * 3882 * * * * 137
+ 24 5907 * 370 2145 349 2218 6368 1301 1267
+
+Q 138 6062 4473 5888 4498 4577 6018 2433 3210 * 3365 4766 * 4657 2564 * 4934 5251 3700 * 4327 138
+ 136 3474 * 1000 1000 * 0 6358 1498 1019
+
+L 139 4025 6062 5688 4840 3645 6355 * 2318 4818 2395 8043 6330 6400 6120 4567 2867 3890 5209 * 4844 139
+ 60 4626 * 1467 648 0 * 6358 1196 1019
+
+I 140 5100 7262 3152 5600 3486 * 6111 2803 5529 2266 4891 4875 6233 * * 3300 7470 2869 6880 5575 140
+ 31 6210 7068 1000 1000 * * 6375 1036 0
+
+F 141 * 6185 * * 432 * * 4022 * 3127 7194 * * * * 4563 * 6811 6538 * 141
+ 114 6663 3920 0 * 0 * 6375 1023 1001
+
+P 142 7314 * * 3430 6112 * 5379 7273 6906 5131 * 4841 546 5489 * 5202 4633 6685 * * 142
+ 0 * * * * 0 * 6258 0 1380
+
+E 143 4896 6069 4761 657 * 2740 * * 5511 * * * * 3886 5992 6013 6627 * * * 143
+ 0 * * * * * * 6375 0 0
+
+I 144 7024 6069 * * 5080 * * 1470 * 1564 5043 6212 * 5206 6993 * 6533 2808 * 5939 144
+ 84 5433 4901 1000 1000 * * 6375 1105 0
+
+T 145 5407 6041 2872 1632 6582 * 6638 5187 2873 5885 * 4093 7008 4051 4991 5152 4144 4520 * 6143 145
+ 885 1124 * 1105 902 2394 304 6387 3391 1258
+
+Y 146 6180 * 7326 * 1987 * 6404 3798 * 4371 6383 7223 5954 4044 * 6163 5246 4417 5394 1361 146
+ 72 5459 5286 1000 1000 * 0 6388 1086 1200
+
+D 147 * * 1016 2211 * 6606 * 5618 4492 7137 6361 3495 5441 6207 * 4291 * 6545 6981 * 147
+ 0 * * * * * 0 6324 0 1352
+
+M 148 3497 * 4840 8101 3688 * 6153 4043 2808 3359 3861 5280 2897 3811 4267 5010 6525 5450 6606 4230 148
+ 16 6545 * 1000 1000 * 0 6324 1015 1352
+
+V 149 4929 * 4121 5443 1756 * * 2596 4913 5813 6498 5258 6361 5841 6937 5107 5007 3712 5133 2896 149
+ 167 3191 * 1685 537 381 2106 6324 1801 1352
+
+D 150 6967 * 3623 2497 * 4891 5180 2630 2798 4356 6594 4387 3458 4499 5234 4506 5794 5015 * 7518 150
+ 14 6645 * 1000 1000 * 0 6320 1018 1045
+
+A 151 6480 * 4046 5325 6155 2557 3825 * 3291 5561 4055 3262 6387 3770 2954 3872 4867 5406 6628 6587 151
+ 0 * * 0 * 0 * 6305 1018 1112
+
+L 152 6247 5233 * 7358 * * 7217 1758 4398 2474 4029 3633 5617 5260 6424 3805 4319 3345 * 7821 152
+ 28 * 5682 * * * * 6372 0 0
+
+R 153 6005 5630 * 4322 2559 4480 4092 4418 6477 4339 7722 4937 3297 4203 2633 4595 5820 6396 6769 3338 153
+ 12 * 6963 * * 838 1182 6335 0 1106
+
+G 154 * * 6118 5094 6942 282 6388 * 5400 6562 * 5949 7319 * * 4956 6216 * * 6424 154
+ 0 * * * * 0 * 6352 0 1075
+
+M 155 4360 4630 * * 2101 * * 3158 * 2059 1746 * * * * * 6204 6142 * * 155
+ 0 * * * * * * 6372 0 0
+
+D 156 * 6427 1630 4406 * 5462 3152 * 6212 * * 1791 * 3544 5799 4249 5951 * 6971 * 156
+ 0 * * * * * * 6372 0 0
+
+I 157 5605 3879 * * 4199 * * 1029 * 4731 * * * * * * 6532 1748 * 5584 157
+ 0 * * * * * * 6372 0 0
+
+A 158 3950 4506 6424 * 3685 * 4658 4324 * * 5215 4345 * 4431 * 2809 1451 4947 * 4354 158
+ 0 * * * * * * 6372 0 0
+
+V 159 7122 5103 * * 2010 6666 * 1315 * 3426 6204 * * * * * * 2385 7477 * 159
+ 0 * * * * * * 6372 0 0
+
+V 160 6077 5526 5807 * * * 3153 3897 3437 5412 * 4104 * 5197 6773 6328 3283 1314 * 4708 160
+ 20 6214 * 1000 1000 * * 6372 1028 0
+
+T 161 6002 5982 * * 3005 6877 * 4487 6186 2715 5183 * * * * 6088 835 5494 * * 161
+ 12 * 6884 * * * * 6342 0 0
+
+T 162 5885 * 5232 3504 6867 4869 7141 * 3899 6166 * 2749 * * 4694 2163 1787 6609 * 5220 162
+ 0 * * * * 0 * 6278 0 1006
+
+A 163 927 6565 * * * 5991 * * 4444 6163 * 4432 * 5138 4295 3018 2933 6987 * * 163
+ 12 * 6901 * * * * 6094 0 0
+
+E 164 6474 * 5976 4387 * 5923 6169 * 1654 5818 * 2479 4638 4017 3391 4089 3380 5171 * * 164
+ 126 3753 6700 1026 974 0 * 6072 1322 1013
+
+T 165 4463 5994 4132 6474 * 4518 * * 6217 5523 * 1995 * * * 2379 1584 6030 * * 165
+ 105 4078 6517 1975 424 0 * 6016 1292 1000
+
+D 166 7757 * 1723 5982 6260 5961 6884 4702 4108 4776 * 3124 5071 3293 3875 3815 4702 3817 * 6484 166
+ 29 * 5649 * * 0 * 6013 0 1012
+
+E 167 3512 * 2756 2663 6195 5828 5869 7374 2851 4765 6084 3931 * 3341 4243 3746 * 5541 5856 4985 167
+ 9 7334 * 1585 585 * 0 5968 1001 1041
+
+E 168 5251 * 2993 1108 5896 7347 3194 7281 4301 5319 7640 4611 * 3725 5494 6767 7599 * * 6419 168
+ 31 5571 * 2224 347 0 * 5925 1072 1041
+
+A 169 1277 7064 * * 6177 3021 5643 4451 * 4425 5274 5771 * * 5688 3243 2782 5976 * * 169
+ 0 * * * * * * 5989 0 0
+
+R 170 4325 * 5641 6117 3787 7955 5820 3350 2640 3114 6398 5174 * 4606 1855 4936 * 4803 * 5512 170
+ 0 * * * * * * 5989 0 0
+
+A 171 2714 * 5921 3775 3412 7549 * 3920 5295 1844 5973 6890 6218 6861 3868 5546 3477 3995 * * 171
+ 0 * * * * * * 5989 0 0
+
+L 172 7415 5933 * * 3430 * * 5233 5688 381 7543 * 6198 * * * * * * 4263 172
+ 0 * * * * * * 5989 0 0
+
+L 173 * 4634 * * 5263 4129 * 4574 * 577 6721 * * * * * 5307 4839 3654 6039 173
+ 0 * * * * * * 5989 0 0
+
+E 174 4932 * 7215 3818 * 5392 5821 * 2762 5825 5955 3348 * 4473 4212 1370 3682 7727 * * 174
+ 0 * * * * * * 5989 0 0
+
+L 175 3019 5137 6861 4467 4961 2034 5984 * 4252 3175 4874 7320 * 5422 5525 2250 5514 * * 5531 175
+ 0 * * * * * * 5989 0 0
+
+L 176 * * * * 1490 * * 3103 * 1511 3232 * * * 6628 * * 5116 * 5000 176
+ 13 * 6849 * * * * 5989 0 0
+
+G 177 5797 * 5791 7056 5907 914 5711 * 3194 * 5504 4624 * 2499 4604 * * * * * 177
+ 0 * * * * 0 * 5798 0 1000
+
+F 178 7362 6887 * * 1581 * * 2882 * 2060 2477 * * * * * 5394 3786 * * 178
+ 0 * * * * * * 5680 0 0
+
+P 179 6679 * * * 5000 * * * 7135 * * * 316 4109 5895 * * 5442 * 4296 179
+ 0 * * * * * * 5480 0 0
+
+F 180 * * * * 634 5860 6555 3629 * 3363 6979 * * * * * 4753 3705 * 5148 180
+ 75 4301 * 0 * * * 5364 1076 0
+
+R 181 3100 * 5660 4112 5747 * 5808 3664 3053 * 4657 5773 * 3845 2574 3798 6698 4445 * 2765 181
+ 0 * * * * 0 * 4568 0 1012
+
+K 182 4193 * 2469 3133 * 4410 * * 1627 * * 3533 4656 3873 5159 * 4115 * * * 182
+ 0 * * 0 * * * 3907 0 0
+
+//
+�HHsearch 1.5
+NAME 4bc967f8d6c71174670a6efb6d0861ff
+FAM
+FILE 4bc967f8d6c71174670a6efb6d0861ff
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:00:28 2013
+LENG 222 match states, 222 columns in multiple alignment
+FILT 117 out of 1276 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCHHHCEEEEEEE
+ECCCCCCCCCEECCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCEEEEECCCCEEECCCCCEEEEEEEEEECCCHHH
+CCEEEEEEEECCCCCEEEEEEC
+>ss_conf PSIPRED confidence values
+9389926987996899799998965888998469999958999827999994268755410266668738999614788078997568878884899978
+7378875533132216878873124575699605543323542899998158888997499999899382000353067079969888999990589643
+9489999993788977999989
+>Consensus
+xxxxxxxxxxxxxxGxxvxLxCxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxsLxIxxxxxxDxgxYxCxv
+xxxxxxxxxxxxxxxxxlxvxxxxxxxpxixxxxxxxxxxgxxxxlxCxxxxxxpxxxxxvxWxxxgxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxxd
+xgxyxCxvxxxxxxxxxxxixx
+>4bc967f8d6c71174670a6efb6d0861ff
+EVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPPGKRLEWIAASRNKGNKYTTEYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCAR
+NYYGSTWYFDVWGAGTTVTVSSESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPE
+GESVKCSVQHDSNPVQELDVNC
+>gi|5305517|gb|AAD41690.1|AF091139_1 immunoglobulin alpha heavy chain constant region [Trichosurus vulpecula]
+QMNSLDTGDTGL----YYCARANDYRTDVHRVPLDVWGKGTMVTVS------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------
+>gi|281349765|gb|EFB25349.1| hypothetical protein PANDA_021873 [Ailuropoda melanoleuca]
+--SVSQmKNQVTLSERAFLIVNHSFA--ANKsappfsgvFSVLVKLCSCPENH--------------KRKCDGSNKG-FEATNEE-KTTFPWEKLSVPMA
+DMAVCHCA--------------------------------------------------------------------------------------------
+-------------------------------
+>gi|18858393|ref|NP_571075.1| CD166 antigen homolog A precursor [Danio rerio]gi|2497299|sp|Q90460.1|C166A_DANRE RecName: Full=CD166 antigen homolog A; AltName: Full=Activated leukocyte cell adhesion molecule A; AltName: Full=DM-GRASP homolog; AltName: Full=Neurolin; AltName: CD_antigen=CD166; Flags: Precursorgi|452158|gb|AAA50024.1| transmembrane glycoprotein [Danio rerio]
+--------------GETIEVPCNngNNK-PDGLIFTKWKYAKDDGSPGDLLIKQAQKD--DPtvSAMDGYKTRVSIAAN-----SSLLIAQGSLTDQRVF
+TCMVV--S---STNLEEFSVEVKVH-KKPSAPVIKNKVKELENGKLTQLGECVVESANP--AADLIWMKNNQALvddgkTIIITSDVTKDpvTGLSSTSS
+RLQYTARKEDVASQFTCVAKHVTGPNQV-----
+>gi|334350079|ref|XP_001376500.2| PREDICTED: v-set and immunoglobulin domain-containing protein 1-like [Monodelphis domestica]
+-VEVTIPVKVMnVTVGTDATFLCTYtTTAATTKLTIQWsFYHIKKFDIIThspclniqsmeektisqclkmvhtrdargrcswtsqVYYS--QDG--QAS
+GIGKYKDRVTGT--STPGNASITISNMQPSDSGVYVCDVT--N---PPDFQGINQGLIVANVLVKPSKPYCSIRGTPEANHAISLSCFSAEGAP--PPKY
+QWFkLEEDTIKPVNEQYNPTTGLLV-------IGNLTTFEKGHYQCIASN-SLGNSSCEID-
+>gi|56207974|emb|CAI21226.1| novel immune-type receptor 9, allele 1 [Danio rerio]
+-------------SGDSVSLTCTVlNQKCVGNHSMYWLIIESQDYRPRIISTHGTP---VDQCEWISDADFRAL----RCVYSFSRKDFRLSNSATYSCT
+VTACG----EKLDRNVSKLDI-------------------------------------------------------------------------------
+-----------------------
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+------------------------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAA-QN-----
+------tqrkweaagvaeqw----RAYL---EGECLEWLRRYLEKGK-------------------------
+>gi|31339976|sp|Q8AXA0.1|B2MG_RAJEG RecName: Full=Beta-2-microglobulin; Flags: Precursorgi|24528462|gb|AAN62852.1| beta-2 microglobulin [Raja eglanteria]
+----------------------------------------------------------------------------------------------------
+---------------------AVP-SPPQVVVYTYKPVVHGEKNTLLCHAKEFNP-PNVELQLFEDGNVFsQANQTDLSFESNWKFKLTKFIELIPRE--
+-DVEYSCHVMYMGKT--------
+>gi|321475782|gb|EFX86744.1| hypothetical protein DAPPUDRAFT_44172 [Daphnia pulex]
+-------------NHHRRHSTSTAGYDHPSeltm--DdgylVLWFV-DPDRKPFYSLDVRRGRsgrH--WWNEE-rFgr-RVRFL----AstL--arLQI
+VNVTR---QDGGDYRCRVD----------FNSApsrnfkYRLVVIE-PPSSVVI--ldGFLQQLSVvagpleeGNDLILTCKAYGGYP-QP-WVTWWQGG
+QL-ldN--ttDARSPES-vSNLL---VVPRVGRQHL--HDAFTCQVTS------------
+>gi|5327167|emb|CAB46330.1| immunoglobulin light chain variable region [Mus musculus]
+----------------------------------------------------------------------------------------------------
+--------------------------------PAILSVSPGERVSFSCRASQS-iGT---SIHWYqqRTNGSPRLLIKYasesi----------------
+-------SG---------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+E 1 * * 2022 2035 * * 4260 * * * * * * 1503 * 3490 5990 * * * 1
+ 0 * * * * * * 6914 0 0
+
+V 2 * * 4945 * 3577 * * 1840 * 2032 6107 * * 5103 * * * 1945 * 4143 2
+ 0 * * * * * * 8200 0 0
+
+K 3 5045 * 4473 2846 4032 5546 4227 4040 3304 5390 * 4759 * 3176 4647 5527 4974 2166 * * 3
+ 0 * * * * * * 8733 0 0
+
+L 4 * * 4509 * 4817 * 5765 3437 * 1737 3930 5900 4904 5650 * 4949 5805 1627 * * 4
+ 0 * * * * * * 9333 0 0
+
+V 5 4367 * * 3939 * * * 3805 4852 5558 4749 4896 * 3634 5247 3022 1712 2709 * * 5
+ 0 * * * * * * 9230 0 0
+
+E 6 4810 * 4697 3844 6097 5820 6125 6137 3776 3940 * * 6143 1969 3754 3784 3780 2572 * * 6
+ 21 * 6143 * * * * 9258 0 0
+
+S 7 6296 * * 3593 6169 4111 4430 * 6646 4365 * 4338 1642 5112 * 3033 2421 5638 * * 7
+ 18 6316 * 0 * 0 * 9637 1205 1018
+
+G 8 4633 * 4913 3917 * 3470 5693 6162 3295 6056 * * 1660 3182 4518 3503 4596 5632 * * 8
+ 0 * * * * * * 9799 0 0
+
+G 9 3687 * 3391 3052 5951 4411 * 5954 3459 4568 * 3515 3069 3733 3974 3027 5275 * * * 9
+ 42 5112 * 0 * * * 9869 1230 0
+
+G 10 5471 * 4746 3407 * 5127 * 3606 6462 3064 * 6267 4450 3662 5971 3552 4076 1769 6307 * 10
+ 42 5128 * 0 * * * 9953 1230 0
+
+L 11 5558 * 4437 3670 6013 5074 5600 3698 5120 3491 4661 4691 6128 6017 3642 3141 3506 2519 * 5081 11
+ 415 2001 * 0 * * * 10046 4131 0
+
+V 12 2778 6537 * 6374 6519 3946 * 3585 4662 3664 * * 4164 6290 5227 4070 4003 1619 * 6506 12
+ 16 * 6475 * * * * 10190 0 0
+
+Q 13 4673 * 5758 4483 6602 4486 4513 3927 2953 4847 4624 5216 5460 3785 4225 3311 3515 3109 5280 5425 13
+ 0 * * * * * 0 10181 0 1391
+
+P 14 4994 * 5107 1767 5753 6530 * 4342 5518 3142 * * 3019 5895 4976 3882 4426 2989 * 5658 14
+ 0 * * * * * 0 10308 0 1391
+
+G 15 * * 5026 3532 * 521 6805 * 5752 5689 * 3709 * 6307 * 4317 * * * * 15
+ 0 * * * * * 0 10427 0 1391
+
+G 16 5223 * 3080 2013 * 3244 5291 * 4512 6301 6624 5819 * 2870 4541 2880 4313 6219 * 6346 16
+ 0 * * * * 916 1089 10427 0 1391
+
+S 17 4465 6324 4712 3770 * 6992 6360 6679 3728 * * 2730 2769 4302 6673 2634 2475 5651 * 7220 17
+ 0 * * * * 0 * 10478 0 1086
+
+L 18 2341 * * 6665 5737 6789 * 3430 6286 3093 * * 5854 * * 5345 5799 1081 * 6712 18
+ 0 * * * * * * 10483 0 0
+
+R 19 6446 6712 5593 3018 5824 * 5913 3925 4801 5443 * 4732 4454 5178 3972 3143 1607 4063 * * 19
+ 10 7206 * 1000 1000 * * 10483 1003 0
+
+L 20 5808 * * 8158 3827 * 7206 2701 * 581 4862 * * * * 6193 * 5005 * * 20
+ 0 * * * * * * 10483 0 0
+
+S 21 6719 * 4674 3361 5149 6180 5272 6516 * 3957 * 3970 2487 4421 3140 2824 3095 5298 6362 6286 21
+ 0 * * * * * * 10483 0 0
+
+C 22 4732 137 * * 6530 * * 6264 * * * * * * 6605 5725 * * * * 22
+ 0 * * * * * * 10483 0 0
+
+A 23 4007 7206 3963 4219 * 4874 4771 5347 4434 4629 * 3120 4366 3700 4307 2611 3325 3889 * 6743 23
+ 90 4043 * 797 1236 * * 10483 1924 0
+
+T 24 2590 6665 7373 6264 3189 6054 5193 3775 6758 3528 * 5719 4775 6496 * 4363 4852 2209 * 3083 24
+ 89 5245 4892 440 1927 * * 10483 1325 0
+
+S 25 3979 * 3749 3431 5418 5636 6964 6680 4903 5184 * 3275 3300 4853 5172 2496 2726 5146 7141 5924 25
+ 189 3856 4218 1531 612 1479 641 10414 2021 1455
+
+G 26 3414 6679 3607 3978 6249 2199 5324 * 4755 3698 * 3212 4046 4104 5110 4973 3834 * 6220 6644 26
+ 390 5568 2213 0 * 2622 256 10359 1165 2337
+
+F 27 4704 * 4055 6144 3218 5375 4704 5212 3765 3222 * 4198 3478 4489 4366 2874 3745 6369 * 4340 27
+ 118 5924 4008 0 * 181 3087 9993 1000 4939
+
+T 28 3999 6330 3632 4709 4428 4651 4893 5694 3508 4223 * 3525 3220 4845 6042 3042 3054 4804 8060 * 28
+ 91 6723 4272 1000 1000 2780 227 10369 1000 2255
+
+F 29 4553 4357 3573 3615 4349 3937 5095 4684 5129 3611 * 6551 2992 4697 5622 5006 4628 3900 6180 3287 29
+ 132 4128 5061 1672 543 1056 946 10349 1761 2841
+
+S 30 3566 * 3010 3931 5815 3446 5964 * 4227 5453 * 4495 2935 4116 4266 3408 3362 5454 * 5317 30
+ 291 4534 2840 291 2454 1380 699 10348 1543 2612
+
+D 31 4624 * 3464 4584 6372 4538 3337 6473 3474 3042 * 3594 3635 4289 7138 3248 4499 4259 * 5209 31
+ 202 3784 4108 649 1464 4313 74 10118 1850 4136
+
+F 32 3930 * 4360 4144 3988 4677 6201 3182 6144 3212 6303 3929 3333 * 6186 4483 3330 5080 * 3105 32
+ 121 3641 * 0 * 137 3469 9811 2031 4590
+
+Y 33 5202 * 5015 4672 4924 5168 5003 3848 5537 3527 5396 4359 5609 3809 4860 2891 3178 3523 * 3294 33
+ 33 5487 * 0 * * 0 10454 1226 1228
+
+M 34 * 5792 * * 4045 6145 6288 2288 5623 2127 4332 * 6740 * * 6335 5735 1592 5744 * 34
+ 14 * 6743 * * * 0 10448 0 1228
+
+E 35 5551 * 7591 3865 3752 5383 5023 4710 3381 3743 6407 4747 * 3699 3815 2953 3293 6495 * 2969 35
+ 0 * * * * 1736 515 10165 0 1403
+
+W 36 * * * * 5219 * * 6288 * 5103 * * * * * 6145 * 4311 244 5465 36
+ 137 4207 4787 646 1470 * 0 10448 1817 1228
+
+V 37 * 5582 6565 4634 2155 * 6831 5282 3486 3060 6889 6515 * 5084 4580 4996 5498 4518 4612 2112 37
+ 46 * 4982 3170 170 2579 264 10396 1003 1921
+
+R 38 6941 * * 6185 5691 7165 4606 6234 2131 3712 5184 4987 * 3759 1970 4273 * 5597 3921 3914 38
+ 126 5130 4177 0 * 2053 398 10349 1256 2220
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+
+//
+�HHsearch 1.5
+NAME 4c402988a256f524c3b41ec989161202
+FAM
+FILE 4c402988a256f524c3b41ec989161202
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:35:57 2013
+LENG 58 match states, 58 columns in multiple alignment
+FILT 161 out of 1130 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEHHHEEECC
+>ss_conf PSIPRED confidence values
+9889992452899988435369999999784489969999579977987876789987
+>Consensus
+xxxxxalxxxxxxxxxxlxxxxgxxxxvxxxxxxxwxxxxxxxxxxGxxPxxxvxxxx
+>4c402988a256f524c3b41ec989161202
+AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYG
+>gi|193586979|ref|XP_001952482.1| PREDICTED: tyrosine-protein kinase CSK-like [Acyrthosiphon pisum]
+---NTGRTHFGTTPQQLVTHSFCDRASPVSpVTNIGSYSSF----------VQHVKD--
+>gi|119593683|gb|EAW73277.1| protein kinase C and casein kinase substrate in neurons 2, isoform CRA_a [Homo sapiens]gi|119593684|gb|EAW73278.1| protein kinase C and casein kinase substrate in neurons 2, isoform CRA_a [Homo sapiens]
+---SyEKTQSYPTDWSDNESNNPfsstdangeLQSIRrQRHLGERSSIPGPV-----------------
+>gi|302414846|ref|XP_003005255.1| AbpA [Verticillium albo-atrum VaMs.102]gi|261356324|gb|EEY18752.1| AbpA [Verticillium albo-atrum VaMs.102]
+--QQELREANIPAAQPPAGAQAGGQRALIHSARANtsptlkWstrtggWAPTRrARAASSLATTSSSSRT-
+>gi|32565949|ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans]gi|24817571|emb|CAA19487.2| C. elegans protein Y37A1B.2b, confirmed by transcript evidence [Caenorhabditis elegans]
+---LRKAVENYPtPPGGSSEDAHRQLLerrrkQMLRrHTCSTLIKQDTSASPHKMKPpilmeeedEQHSTGK-
+>gi|161077253|ref|NP_001097376.1| endophilin B, isoform D [Drosophila melanogaster]gi|157400406|gb|ABV53852.1| endophilin B, isoform D [Drosophila melanogaster]
+---DKSLTNLLEDFHIEFDTTAvSTVIFVTECSpvNEDYMYGK-QGLLKGLVPRAFVEML-
+>gi|328776214|ref|XP_393399.3| PREDICTED: tyrosine-protein kinase CSK [Apis mellifera]
+-------------MTTHSNVTTPNITSHMNtGSTPVILTSNVTNPSNPAALS--VNP--
+>gi|226228854|ref|YP_002762960.1| hypothetical protein GAU_3448 [Gemmatimonas aurantiaca T-27]gi|226092045|dbj|BAH40490.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
+---------------------HHSEVTLLSRYNSEWALIRSANNEEGYCSLKYLTAI-
+>gi|125805800|ref|XP_694393.2| PREDICTED: myosin-VIIa [Danio rerio]
+--YAVAIQD-lsRqgASSALAIFWQGSHIAELQTrrcAVYHkGWRIFSRRrVDKSKeredksnwgsflRCNSDSA----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+ 45 5026 * 3785 109 0 * 9476 1257 1006
+
+Y 57 5390 6737 * 4409 4629 * 6709 2627 4862 1796 4650 6812 * 6748 * 5922 4399 2285 * 4095 57
+ 134 3494 * 0 * * * 8915 1227 0
+
+G 58 3465 * 2982 5455 * 1638 4170 * 5196 * * 3772 5027 * * 2608 4074 5117 * * 58
+ 0 * * 0 * * * 6974 0 0
+
+//
+�HHsearch 1.5
+NAME 4e1e30ab1e15c9c1545ff8328bcfebeb
+FAM
+FILE 4e1e30ab1e15c9c1545ff8328bcfebeb
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:42:23 2013
+LENG 75 match states, 75 columns in multiple alignment
+FILT 64 out of 66 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEECCCCCEEEEECCCEEEEECHHHEEECCC
+>ss_conf PSIPRED confidence values
+999999999100899957866899823216788899998614697965996499998402168963202888369
+>Consensus
+mkxGdrVrVxxsvxVyhxPxxrxxxfDlxGmEGeVxxxvxxwkGrxISanlPxxVxFxxkFxaHlredElExixx
+>4e1e30ab1e15c9c1545ff8328bcfebeb
+MNVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPVLVKFEQRFKAHFRPDEVTLIED
+>gi|254423582|ref|ZP_05037300.1| Ferredoxin thioredoxin reductase variable alpha chain [Synechococcus sp. PCC 7335]gi|196191071|gb|EDX86035.1| Ferredoxin thioredoxin reductase variable alpha chain [Synechococcus sp. PCC 7335]
+MKVGDRVRVKAPLTLFNHPKFRNQPHNVEGMEGVISAILTDWEGRPISANYKIVASFEvegakRPFK-aHLHEDELEV-iE-
+>gi|158334553|ref|YP_001515725.1| ferredoxin-thioredoxin reductase variable alpha chain [Acaryochloris marina MBIC11017]gi|158304794|gb|ABW26411.1| ferredoxin-thioredoxin reductase variable alpha chain [Acaryochloris marina MBIC11017]
+MQVGDQVRVKESVIIYHHPEHRNNPFDIKGTEGELIQVIKDWQGREVSANYPYLVKFSKKLRIHLGEHEIESV--
+>gi|302772070|ref|XP_002969453.1| hypothetical protein SELMODRAFT_170523 [Selaginella moellendorffii]gi|300162929|gb|EFJ29541.1| hypothetical protein SELMODRAFT_170523 [Selaginella moellendorffii]
+-GVGSRIRVKGPLKVFHVPK--NPEFDLGGQEGEVKEVLTSWKGKIISANLPYKTQFAlsidgkeVKLIAHLREDEFEVIG-
+>gi|729538|sp|P38365.2|FTRV_SPIOL RecName: Full=Ferredoxin-thioredoxin reductase, variable chain, chloroplastic; Short=FTR-A; Short=FTR-V; Short=Ferredoxin-thioredoxin reductase subunit A; Flags: Precursorgi|474766|emb|CAA55480.1| ferredoxin:thioredoxin reductase [Spinacia oleracea]gi|861138|emb|CAA54408.1| ferredoxin-thioredoxin reductase SU A [Spinacia oleracea]
+-KVGCKVKVKSPLKVYHVPKL--PEVELTpDMVGVIKQYVGFWKGKYISPNYPFKVEYRidvpdrgsVKLVVHLKEEEFEIIA-
+>gi|195655467|gb|ACG47201.1| ferredoxin-thioredoxin reductase, variable chain [Zea mays]
+-KIGRRVRVTAPLRVYHVLKA--PDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFElavegqpkpVRFFAHLREDEFEFVDG
+>gi|255074043|ref|XP_002500696.1| predicted protein [Micromonas sp. RCC299]gi|226515959|gb|ACO61954.1| predicted protein [Micromonas sp. RCC299]
+-EAGDKVKVVSKVLVYHVpKGDRKNGTDLSGWEGVVDSRADDYNGTYISANLEVKVAFavpndpkGKTFIVHCKENELEK---
+>gi|53801456|gb|AAU93930.1| plastid ferredoxin-thioredoxin reductase variable chain subunit A [Helicosporidium sp. ex Simulium jonesi]
+-REGATVRVTSPITVWHVPKFR-KGMNVQGLQGKIMQNVSVFRGVPLSPSKPWKVAIDakdpagqaFKFVMHLGDEEMEVLN-
+>gi|307110609|gb|EFN58845.1| hypothetical protein CHLNCDRAFT_140698 [Chlorella variabilis]
+-AEGARVKVKAPVKVYHVGKYK-AGLELEGMEGTVVQPnVCDYKhhdGKkhDLSATLPVKVQFmvpapdggkDVKVLVHLVsslagvaDDEVEA---
+>gi|219111423|ref|XP_002177463.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]gi|217411998|gb|EEC51926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
+-EKGALVRVCvEGVKAFQVPKKGQGTFDAdknfvlgekflllpVGMRGTITKIY---NQDEVSANFPVQVKFQpgtnleegydapVAFMMHMETYEIEVI
+--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * 4653 * * * 4076 4985 202 * * * * * * * * * 1
+ 0 * * * * * * 2473 0 0
+
+N 2 5248 * * 2740 * 5857 * * 964 * * 4650 5610 2541 4450 5954 * * * * 2
+ 0 * * * * * * 3275 0 0
+
+V 3 3271 * * 3212 * * * 2383 3617 5183 * * 3659 6449 * * 5826 1398 * * 3
+ 0 * * * * * * 3316 0 0
+
+G 4 * * * * * 0 * * * * * * * * * * * * * * 4
+ 0 * * * * * * 3316 0 0
+
+D 5 2369 5482 897 6281 * * * * 4225 5997 * * * 4594 5194 3866 5184 * * * 5
+ 0 * * * * * * 3316 0 0
+
+R 6 * * * * * * * * 1985 4238 * * * 3851 779 * 4558 * * * 6
+ 0 * * * * * * 3316 0 0
+
+V 7 * * * * * * * 3895 * * * * * * * * * 100 * * 7
+ 0 * * * * * * 3316 0 0
+
+R 8 * 5087 * * * * * * 2027 * * * * 5826 672 * 4674 4613 * * 8
+ 0 * * * * * * 3316 0 0
+
+V 9 * * * * * * * 3827 * * * * * * * * * 105 * * 9
+ 0 * * * * * * 3316 0 0
+
+T 10 4960 3960 * 5158 * * * 3684 1543 * * 4464 * 6270 4794 3918 2151 3857 * * 10
+ 79 4238 * 0 * * * 3316 1095 0
+
+S 11 2038 * 6722 2119 * 4020 * * 5205 * * 5924 * 4718 5680 2592 3280 3550 * * 11
+ 0 * * * * * * 3316 0 0
+
+S 12 4982 * * * * 4238 * * 4820 * * 6022 1476 * * 985 * * * * 12
+ 15 6582 * 0 * * * 3316 1000 0
+
+V 13 * * * * * * * 3480 * 2266 * * * * * * 5156 568 * * 13
+ 0 * * * * * * 3316 0 0
+
+V 14 * * * * * * * 2687 1692 4820 * * * * 3630 * 3332 1645 * * 14
+ 0 * * * * * * 3316 0 0
+
+V 15 4238 * * * * * * 4872 * 5143 6472 * * * * * * 195 * * 15
+ 0 * * * * * * 3316 0 0
+
+Y 16 * * * * 2345 * 4499 * * * * * * * * * * * 4558 481 16
+ 0 * * * * * * 3316 0 0
+
+H 17 * * * * * * 483 5295 * * * 2695 * 4238 * * 4860 5876 * * 17
+ 0 * * * * * * 3316 0 0
+
+H 18 4594 * * 5710 * * 1074 * * * * 5142 * * * * * 1197 * * 18
+ 96 4820 5103 0 * * * 3316 1049 0
+
+P 19 5945 * * * * 5312 * 5889 4808 4630 6348 * 252 * * 6210 * * * * 19
+ 0 * * * * * 0 3309 0 1034
+
+E 20 6434 * 4597 1691 * 3950 * * 1332 * * * * 3019 4262 * * * * * 20
+ 72 * 4357 * * 0 * 3309 0 1034
+
+H 21 3570 6112 4792 * 3767 * 1034 * 4222 5380 5095 3862 * * * * * 3286 * 5306 21
+ 206 * 2908 * * * 0 3302 0 1078
+
+K 22 5757 * * * * 3786 4374 * 2746 * * * 3808 * 643 * * * * * 22
+ 385 * 2094 * * 1700 531 3238 0 1421
+
+K 23 5498 * * * * 1633 * * 3129 * * 1771 * 2990 * 4803 5089 4136 * * 23
+ 0 * * 0 * 240 2707 3020 1000 1718
+
+T 24 3962 * 4893 2124 * 4201 * * 3249 * * 4215 2259 2144 * * 5374 * * * 24
+ 37 * 5309 * * 0 * 3297 0 1080
+
+A 25 1936 * 3884 2501 * 2434 * * * * * * 2131 * * 5265 4188 * * * 25
+ 0 * * * * 0 * 3326 0 1026
+
+F 26 * * * * 875 * 5143 * * 2371 3996 * * * * 5876 4820 3082 * * 26
+ 0 * * * * * * 3316 0 0
+
+D 27 * * 235 4017 * 5802 * * * * * 3821 * * * * * * * * 27
+ 0 * * * * * * 3316 0 0
+
+L 28 3836 * * * * * * 2334 * 850 3838 * * * * * * 3225 * * 28
+ 79 4238 * 3807 107 * * 3316 1095 0
+
+Q 29 * 4819 4991 3662 * 4872 * 5680 1492 6281 5233 4330 * 2603 5121 4820 4088 3875 * * 29
+ 33 5482 * 0 * * * 3316 1017 0
+
+G 30 * * 4358 * * 72 * * * * * * * * * * * * * * 30
+ 0 * * * * * * 3316 0 0
+
+M 31 5339 * * * * * 6209 5190 5199 2630 1047 * * 3029 5710 4368 4788 * 4820 * 31
+ 0 * * * * * * 3316 0 0
+
+E 32 * * 6022 415 * * * 5710 * * * 5826 * 3402 4238 6208 6108 5482 * * 32
+ 0 * * * * * * 3316 0 0
+
+G 33 * * * * * 0 * * * * * * * * * * * * * * 33
+ 0 * * * * * * 3316 0 0
+
+E 34 * * 4213 1057 6028 * 6259 * 4153 * * * * 6404 * * 2545 2338 * * 34
+ 0 * * * * * * 3316 0 0
+
+V 35 * * * * * * * 1587 * 3504 * * * * * * * 788 * * 35
+ 0 * * * * * * 3316 0 0
+
+A 36 4018 5997 4820 6127 4612 * 5132 3611 1865 4775 4218 5802 * * * 4383 3585 2267 * * 36
+ 0 * * * * * * 3316 0 0
+
+A 37 2665 * 4124 3801 * 4605 * * 3221 * * 4082 * 1710 * 2956 3808 * * * 37
+ 0 * * * * * * 3316 0 0
+
+V 38 * * 4594 * * * * 1636 * 6485 * 4558 5377 5680 3968 * * 2014 * 2132 38
+ 35 5378 * 0 * * * 3316 1021 0
+
+L 39 3562 * * * * * * 2992 * 1827 * * * * * * * 1137 * 4238 39
+ 101 * 3893 * * * * 3316 0 0
+
+T 40 4053 4766 3173 6258 * 2824 5877 * 5719 6217 * 3285 * * 4989 3198 1602 5977 * * 40
+ 0 * * * * * 0 3184 0 1132
+
+E 41 * * 1459 2525 5424 * 4106 6185 * 3816 * 6500 * 4048 * 5061 5064 2599 * * 41
+ 0 * * * * * 0 3184 0 1132
+
+W 42 * * * * 3366 * 5645 * * 4946 * * * * * * * * 416 3308 42
+ 0 * * * * 347 2226 3184 0 1132
+
+Q 43 * * 5123 3980 * * 5910 * 975 * * 2712 * 2590 3969 * * * * * 43
+ 35 5367 * 1585 585 0 * 3314 1021 1000
+
+G 44 * * * * * 79 * * * * * * * 4238 * * * * * * 44
+ 0 * * * * * * 3316 0 0
+
+R 45 * * 4238 * * * * * 1490 * * * * * 1045 * 4820 3816 * * 45
+ 35 5378 * 1000 1000 * * 3316 1021 0
+
+P 46 * * 5377 3480 * * * 4740 6028 * * * 1193 5710 2546 * 3641 4670 * 3535 46
+ 0 * * * * * * 3316 0 0
+
+I 47 * * * * * * * 835 * 2949 * * * * * * * 1689 * * 47
+ 0 * * * * * * 3316 0 0
+
+S 48 * * * * * * * * * * * * * * * 172 3157 * * * 48
+ 0 * * * * * * 3316 0 0
+
+A 49 456 * * * * * * * * * * * 1885 * * * * * * * 49
+ 0 * * * * * * 3316 0 0
+
+N 50 * * * * * * * * * * * 494 * * * 4558 2015 * * * 50
+ 0 * * * * * * 3316 0 0
+
+L 51 * * * * 2678 * * * 4558 613 6172 * * * 6157 * * * 5924 3280 51
+ 0 * * * * * * 3316 0 0
+
+P 52 * * * 3968 * * * * 5143 * * * 140 * * * * * * * 52
+ 0 * * * * * * 3316 0 0
+
+V 53 * * * * 2431 * * 2254 * 4881 * * * * * * * 1502 4558 2511 53
+ 0 * * * * * * 3316 0 0
+
+L 54 * 5680 * * * * * 3139 1239 2462 * * * 2784 6157 * * 3285 * * 54
+ 0 * * * * * * 3316 0 0
+
+V 55 5143 * * * * * * 3459 * * * * * * * * 5141 230 * * 55
+ 0 * * * * * * 3316 0 0
+
+K 56 2152 * * 2560 * 6271 * * 2472 * * * * 1664 4600 4601 * 6143 * * 56
+ 0 * * * * * * 3316 0 0
+
+F 57 * * * * 201 * * 3966 * 5184 * * * * * * * 5928 * 5482 57
+ 267 2567 * 2767 229 * * 3316 1389 0
+
+E 58 5934 * 2524 3275 6141 2031 6405 * * 4255 * 5052 4962 3842 5475 2686 5323 4363 * * 58
+ 1107 1474 2507 3123 176 0 * 3319 1856 1000
+
+Q 59 * * 5805 5400 4347 5312 * 5631 1808 * 5308 5035 3504 5845 3933 * * 1508 * * 59
+ 0 * * * * 0 * 3189 0 1398
+
+R 60 4238 * * * * * * * 697 * 5132 * 5143 * 2071 * 4820 * * * 60
+ 0 * * * * * * 3316 0 0
+
+F 61 * * * * 354 * * * * 4166 * * * * * * * 5377 * 2861 61
+ 0 * * * * * * 3316 0 0
+
+K 62 6127 * * * 2852 * * 3398 1745 4159 4238 * * 5559 2684 4088 * 3192 * * 62
+ 41 * 5143 * * * * 3316 0 0
+
+A 63 833 * * * * 5272 * 5818 6602 * 3322 * * * * 6134 5036 2058 * * 63
+ 15 6602 * 0 * 0 * 3299 1056 1031
+
+H 64 * * * * * * 0 * * * * * * * * * * * * * 64
+ 0 * * * * * * 3316 0 0
+
+F 65 * 4820 * * 1937 * * * * 736 3617 * * * * * * 5537 * * 65
+ 0 * * * * * * 3316 0 0
+
+R 66 5630 5537 * 4238 * 3630 4021 * 1818 * * * * 5081 1232 * * 5377 * * 66
+ 35 5378 * 2807 222 * * 3316 1021 0
+
+P 67 3229 * 2765 701 * * * * * * * * 4664 * * 4700 4238 * * * 67
+ 0 * * * * * * 3316 0 0
+
+D 68 * * 833 2730 5415 5444 5082 * * * * 3148 * 6086 * 4997 * * * 4238 68
+ 0 * * * * * * 3316 0 0
+
+E 69 * * * 0 * * * * * * * * * * * * * * * * 69
+ 0 * * * * * * 3316 0 0
+
+V 70 * * * * 2094 * * 2990 * 1081 4558 * * * * * * 3002 * * 70
+ 0 * * * * * * 3316 0 0
+
+T 71 5630 * 4593 328 * * * * 6108 * 5826 6022 * 4444 * * 4367 * * * 71
+ 0 * * * * * * 3316 0 0
+
+L 72 2793 * * * 3018 * * 3364 3963 3471 * * 6165 * * 4387 5295 1394 * 6237 72
+ 47 * 4972 * * * * 3323 0 0
+
+I 73 3361 * * * * * * 1222 * 1983 * * * * * * * 2178 * * 73
+ 128 3555 * 183 3067 0 * 3173 1158 1031
+
+E 74 3266 * 2125 2610 * 2522 * * * * * 3177 5227 4565 4715 3167 * * * * 74
+ 0 * * * * * * 3006 0 0
+
+D 75 * * 895 1499 * 3204 * * * * * * * * * * * * * * 75
+ 0 * * 0 * * * 1734 0 0
+
+//
+�HHsearch 1.5
+NAME 4f78b9c2edbc3ae2d8e9a0de15b7225f
+FAM
+FILE 4f78b9c2edbc3ae2d8e9a0de15b7225f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:28:29 2013
+LENG 73 match states, 73 columns in multiple alignment
+FILT 107 out of 1112 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 11.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCEECCCCC
+>ss_conf PSIPRED confidence values
+9857999967976658999999998406864479875258669998478899999999998499712323269
+>Consensus
+xxxxxxxxxxxxxcxxcxxxxxxxxxxxxxvxxxxxxxxxxxxxvxxxxxxxxxxxxxlxxxgxxxxxxxxxx
+>4f78b9c2edbc3ae2d8e9a0de15b7225f
+SGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDEQAAE
+>gi|289762151|ref|ZP_06521529.1| metal cation transporter P-type ATPase G ctpG [Mycobacterium tuberculosis GM 1503]gi|289709657|gb|EFD73673.1| metal cation transporter P-type ATPase G ctpG [Mycobacterium tuberculosis GM 1503]
+-DDDPGAMARGYQCAGIRDIATISDRCAlrQRHLVLAAAVPAYASRSASNRKAgvVQKIIDwstrtlsgvrrdvaaqpsgeTSDACcDGED-------
+>gi|84488951|ref|YP_447183.1| cation transport ATPase [Methanosphaera stadtmanae DSM 3091]gi|84372270|gb|ABC56540.1| predicted cation transport ATPase [Methanosphaera stadtmanae DSM 3091]
+------KVDKICDCaDDCCTGNTHHEHNHEHNHehnhehnhedCCDDDCCSDikicncgDCDD---------DDEEEEEVIKEGipllK------
+>gi|108763657|ref|YP_629240.1| copper-translocating P-type ATPase [Myxococcus xanthus DK 1622]gi|108467537|gb|ABF92722.1| copper-translocating P-type ATPase [Myxococcus xanthus DK 1622]
+-----SHVPHSRT---PPPSPAGEAPAIDPVCGMKVDPNApkggHLEHAGLTYAfCNPRCRERFRADPerYL--------
+>gi|304384108|ref|ZP_07366561.1| P-ATPase superfamily P-type ATPase cadmium transporter [Prevotella marshii DSM 16973]gi|304334735|gb|EFM01012.1| P-ATPase superfamily P-type ATPase cadmium transporter [Prevotella marshii DSM 16973]
+----------MDAGKYIGRENKCQMMfatELQPFFYYLCNKEEK--------------------------------
+>gi|340622612|ref|YP_004741064.1| putative cation-transporting P-type ATPase [Capnocytophaga canimorsus Cc5]gi|339902878|gb|AEK23957.1| Putative cation-transporting P-type ATPase [Capnocytophaga canimorsus Cc5]
+----NEa----QSYTYFVKgmscsgceqtvgerletisgvtvsq--inaKNKTVTLNAPSTISFHKLSQTlegthysihktleeattiSQKTssnngVFY
+---cpMqCEGDKtyskagd-CPICGMDLV------
+>gi|187928736|ref|YP_001899223.1| heavy metal translocating P-type ATPase [Ralstonia pickettii 12J]gi|241114288|ref|YP_002973763.1| heavy metal translocating P-type ATPase [Ralstonia pickettii 12D]gi|187725626|gb|ACD26791.1| heavy metal translocating P-type ATPase [Ralstonia pickettii 12J]gi|240868861|gb|ACS66519.1| heavy metal translocating P-type ATPase [Ralstonia pickettii 12D]
+---EVGHQRYWFCSRHCEKTFLADPARYlshdahdahdhDGAAHDHAPTGVAAVSastkqLAKDPicGmmVDKATALSAERGGRKY-------
+>gi|120610206|ref|YP_969884.1| heavy metal translocating P-type ATPase [Acidovorax citrulli AAC00-1]gi|120588670|gb|ABM32110.1| heavy metal translocating P-type ATPase [Acidovorax citrulli AAC00-1]
+-------------mCPGGWAHSLGaml-SD--PSESPAASSAidrealpgSPSVDGdaLLDDPQEWpsfgrPHASATgPAQ------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 * * * * * * * * * * * * * * * 0 * * * * 1
+ 0 * * * * * * 1000 0 0
+
+G 2 3215 * 2911 2142 * 3250 * * * * * * * * 3513 2165 * 3094 * * 2
+ 0 * * * * * * 5380 0 0
+
+T 3 * * 2673 2749 * 3925 * * 2804 * 3777 * 3712 * 3760 3882 3075 3721 * * 3
+ 238 2718 * 1815 482 * * 6659 1437 0
+
+R 4 5305 * 3625 4059 * * 4091 * 3019 3935 * * 5318 2768 2105 * 2994 4151 * * 4
+ 0 * * * * * * 9215 0 0
+
+Y 5 2861 5659 4623 * * * 4139 4086 4675 3738 4804 4225 3885 4752 4430 5044 3463 2635 * 4327 5
+ 97 3945 * 2722 237 * * 11091 1833 0
+
+S 6 6256 5672 5262 2709 * 4015 4615 4365 3733 3702 4054 4459 4345 3991 3622 4714 3379 4271 * * 6
+ 31 5543 * 1202 823 0 * 12036 2109 1000
+
+W 7 3324 5405 * 4998 3007 4628 5030 3204 4329 2848 5424 6219 * 5164 5556 4227 5090 3843 5352 3476 7
+ 41 5899 6448 1000 1000 * 0 12803 1092 1072
+
+K 8 4020 * 4213 3615 6598 5383 3964 5308 3345 4809 4898 5322 3939 3369 3684 3046 4616 4865 * 4303 8
+ 0 * * * * * 0 12810 0 1304
+
+V 9 4652 * 3848 4495 3983 6094 6358 2378 4951 2882 6360 4526 5094 5037 5788 5361 3920 2538 * * 9
+ 0 * * * * * 0 12810 0 1304
+
+S 10 3671 6080 3284 3468 6206 5535 4117 6170 3127 5320 6281 4586 3826 4234 4544 3465 3985 5094 6521 4247 10
+ 224 4864 3188 0 * 756 1294 12810 1289 1304
+
+G 11 5349 * 3673 4442 * 1599 4515 4314 5036 5880 6020 3582 4026 4425 4990 5169 4133 5888 6098 5328 11
+ 97 5225 4696 1876 459 734 1326 12764 2100 2938
+
+M 12 3666 5580 4857 5307 4372 4364 6051 2676 * 3475 2594 5338 4368 4952 6190 4786 * 3168 6133 4813 12
+ 24 * 5903 * * 1842 472 12905 0 2397
+
+D 13 3858 3855 3018 4003 6553 6352 3266 5704 4307 * 4318 6546 4157 3678 4096 3463 4014 4194 * 5738 13
+ 101 3889 * 1264 777 920 1084 12903 2311 2245
+
+C 14 4764 1225 3936 6080 5844 4545 4716 5417 4450 4775 5270 5660 4837 * 5179 3845 4430 5972 6475 * 14
+ 42 5112 * 0 * * 0 13122 1296 1469
+
+A 15 2824 6001 3525 3984 * 3635 * 6523 5403 5446 4047 3762 3328 4189 3374 4278 4601 4908 6324 4988 15
+ 36 6149 6577 1585 585 * 0 13316 1018 1469
+
+A 16 3292 * 5099 5155 5125 2704 4339 * 6256 5075 4774 3694 4278 6151 4221 3035 2904 4014 * 5982 16
+ 47 5450 6818 0 * 488 1801 13298 1298 1702
+
+C 17 6735 1047 4658 4638 * 4133 5712 4147 5853 4315 4643 6656 4821 4883 6526 6513 5800 4217 6148 * 17
+ 25 6034 9260 3079 182 1012 988 13364 1325 1292
+
+A 18 2652 5938 5844 3379 5103 3265 * 4782 2868 4224 6909 4839 3567 6223 4536 5352 4786 3655 * 5218 18
+ 114 3925 6663 2769 229 * 0 13350 2247 1265
+
+R 19 3259 6032 3542 5154 * 3306 5793 6780 3239 4540 5308 3722 4380 4345 3512 3311 4222 5577 5158 * 19
+ 11 * 7090 * * 3255 160 13146 0 2431
+
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+A 24 3152 * 4298 4968 5066 4705 3427 4519 4581 4080 * 4278 4478 3605 4306 3019 3898 3655 * * 24
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+L 28 3343 * 6715 4786 4725 4400 3856 3914 5064 2840 4233 3642 6280 4167 4351 4394 5072 3337 * 4700 28
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+A 29 3070 6701 3203 3148 5802 4264 3650 * 3876 5002 * 4517 3460 4605 4591 3148 4048 * * 6567 29
+ 87 4603 5872 2240 343 1680 540 13527 1642 2982
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+
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+ 122 3997 5779 2416 299 236 2729 13490 2250 2261
+
+Q 33 3623 4552 3584 3653 * 3288 3366 6047 4044 6552 * 4303 3781 4035 5371 3196 4202 6106 6869 4947 33
+ 14 6922 9272 1585 585 1920 443 13691 1011 1436
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+V 34 2896 3892 5493 5131 4733 4821 4292 5891 6280 3894 3843 4743 4738 6671 5242 3343 4346 2825 5011 5267 34
+ 0 * * * * 1456 654 13669 0 1498
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+Q 35 3926 4960 3653 3779 6027 3713 4608 6642 3480 3963 * 5022 4125 3636 4086 2993 4396 4945 * 5617 35
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+A 39 3689 5264 4198 2964 6969 4673 4092 5220 4905 3411 5573 4528 4032 5690 4330 3018 3881 4483 6344 6528 39
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+
+T 40 3230 * 4983 3839 6209 5060 5072 6907 3809 4612 5395 3694 3336 3764 4518 2775 3360 5071 * 7048 40
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+A 53 2763 4620 3602 3329 5837 4329 5003 6457 4931 5165 5669 4630 3404 3451 3139 4498 6578 4970 * 6203 53
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+
+Q 54 3839 6478 3910 2659 * 4116 6565 6249 3247 5815 6825 5500 3762 4064 3211 3176 3943 4593 * * 54
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+V 55 3671 6048 4670 5633 4113 4510 5908 2261 * 2737 4624 * 4720 4878 * 6936 4846 2322 * 6095 55
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+E 56 2992 * 3648 3735 5402 5922 4463 2913 3869 3407 4869 * 5303 4058 4534 3926 6492 3481 6767 * 56
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+
+A 58 2561 5008 4949 3715 4851 4877 5555 4476 3782 4376 * 4355 3887 4836 4478 3983 3131 4021 * * 58
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+L 59 3882 4477 5165 4691 5267 6087 5784 2077 * 1725 6221 * 5934 5315 5376 3979 * 3645 * * 59
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+Q 60 3415 6188 3638 2499 6111 5385 4863 * 3619 4588 * 4490 3498 3824 3706 3987 3752 6793 * 6275 60
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+K 61 2852 * 3203 3115 * 3291 * 4653 3238 5997 * 5412 5121 6446 3784 2542 4465 5604 * * 61
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+A 62 2722 3581 3902 4330 6393 3665 6227 3745 6234 3167 5145 5101 4298 * 6451 3633 4527 3856 * 4955 62
+ 126 3582 * 1243 792 0 * 12319 2728 1749
+
+G 63 3817 7223 3945 3975 * 1179 * 5663 4581 * * 3754 3964 6253 4373 4279 4657 * * * 63
+ 300 4808 2717 1567 594 * * 12427 1473 0
+
+Y 64 6299 7115 5143 5176 2959 5548 3765 3765 4014 5861 4052 * 4428 * 3827 * 4720 4517 4502 2030 64
+ 104 5354 4462 1585 585 0 * 11864 1183 3561
+
+S 65 3514 * 3319 2948 * 3599 6289 5968 3698 4133 6444 * 3925 3980 4290 3805 3278 4055 * 6539 65
+ 0 * * * * * 0 12238 0 1754
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+L 66 2416 4553 3973 4732 4954 3396 5762 3071 * 3142 6183 * 4596 5825 6068 6392 5183 3271 * 4057 66
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+R 67 3251 5390 5807 3123 * 3573 * 3883 2675 4383 4958 * 3829 4225 3876 4635 * 3297 * 5960 67
+ 68 4445 * 3700 115 * * 11306 1052 0
+
+D 68 3705 * 3699 3424 * 3824 * 4596 4882 2906 4075 * 3284 4833 * 3923 3103 3405 * * 68
+ 0 * * * * * * 9099 0 0
+
+E 69 1784 * * 2900 * * * 2765 * * 2778 * 2879 * * 2767 * * * * 69
+ 0 * * * * * * 4825 0 0
+
+Q 70 * * 1000 * * * * * * * * * * 1000 * * * * * * 70
+ 0 * * * * * * 1752 0 0
+
+A 71 0 * * * * * * * * * * * * * * * * * * * 71
+ 0 * * * * * * 1000 0 0
+
+A 72 0 * * * * * * * * * * * * * * * * * * * 72
+ 0 * * * * * * 1000 0 0
+
+E 73 * * * 0 * * * * * * * * * * * * * * * * 73
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 5039b5951b98074071f6c69dc58114cc
+FAM
+FILE 5039b5951b98074071f6c69dc58114cc
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:00:59 2013
+LENG 127 match states, 127 columns in multiple alignment
+FILT 147 out of 1021 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCEEEEECCCCCEEEEEECCCCHHHCEEEEEEECC
+CCCCCCEECCCEEEEECCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9289914859995899899998974888888349999979999968999995578831326766762588754888789999987996569899999836
+998766799999999826998987589
+>Consensus
+xxxvxqxxxxxxxxGxxvxlxCxxxxxxxxxxxvxWxxxxxxxxxxxlxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxLxixxxxxxDsgxYxCxxxx
+xxxxxxxfgxgtxLxVxxxxxxpxxxx
+>5039b5951b98074071f6c69dc58114cc
+EVKLQESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHE
+YYYAMDYWGQGTTVTVSSAWRHPQFGG
+>gi|62464905|gb|AAX83161.1| immunoglobulin heavy chain variable region [Aotus nancymaae]
+--------------GDPVPHLRCLWLLHRQ-------willeldpPAPKGRG--WSGldisivwWVHQl-QRLPQES-----sh---YFSRHVQEPVLVE
+---------AE-LCDR-----------------------------
+>gi|50428758|gb|AAT77091.1| anti-HCC scFv antibody [synthetic construct]
+EIVMTQTPLsSPVTLGQPASISFRSSQS-LVHsdgNtYLSWLQQRPGQPPRLL--IYK---VSNRFSGGPRQIQ--WQwGQGQIFTLKNQQGWKLRMSGF
+ITARKL--HNFRvgTFGPRDQAGNRRAAAH-----
+>gi|6840832|gb|AAF28780.1| immune-type receptor 2 [Sphoeroides nephelus]
+---HPKRVLVFANVGDNITLGCSSEDSSAN--TFRWFKQTLGEKPRIISSFFKHEKKLEYAKEFQNsQISTNITEGNYHL--KIANLSISDSSTYYCGCI
+--FSYAIEFEEIYMVHV-----------
+>gi|309262028|ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus]
+---------------------------------------------------------------------VFLLTLLHGIQCEVKLVESGGGLVqpggSLR
+LScatsgftfSDFY--MEWVRQPPGKRLEwiaakSA--------
+>gi|255709618|gb|ACU30711.1| CD8 alpha chain [Ctenopharyngodon idella]
+----------IYKEGEKVQVDCDLKQSG----TLTFWFRINSKGADYLFSVKS---ADIKENDlNSEHYTVNTNsGK---VQLDIKSFKKkTDSGVYVCA
+AM--NSNKLFFGGLTRIEGEPDPT------
+>gi|149632037|ref|XP_001512632.1| PREDICTED: similar to T cell receptor gamma chain [Ornithorhynchus anatinus]
+---------------------------------------------------------------------ACGHRVSTVSGVKYFGTGTKLVVTGFKHCaL
+QSGAYIKVFGSGTKLIVENTTP------
+>gi|74218336|dbj|BAE23783.1| unnamed protein product [Mus musculus]
+----------------------------------------------------------------------------MLEMIRKLLLYDDHKSNLVSSPS-
+QLS-iQHKLC----FTMRNKDK------
+>gi|149602051|ref|XP_001518834.1| PREDICTED: similar to OB binding protein-2 [Ornithorhynchus anatinus]
+-FQLVVPNSVTVEEGLCVLIPCTFTYplsfQNSHEALAFWFQE-EGGSQGDP--VATNDPNRPVKDWSRDRFNLTGNPQMDNCSLSIDYARAGDSRKYL-
+-------------------------------
+>gi|6013137|gb|AAF01256.1| coxsackie-adenovirus-receptor homolog [Canis lupus familiaris]
+-LSITTPEqMIEKAKGETAYLPCKFTL-SPEDQGpldIEWLLSPADNqkvDQVIILYSGDKIYDDYYQ-DLKGRVHFTsNDLKSGDASINVTNLRLSDIG
+TYQCKVKKA---PGVGNKKIQLTVLVKPSGI----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+E 1 * * 2874 1813 * 3902 * * 4096 * * * 3824 1682 3808 * * * * * 1
+ 100 3902 * 0 * * * 6504 1072 0
+
+V 2 * * * 5500 3848 4647 * 2233 * 2397 3064 * * 4423 * * 4256 2162 * 5379 2
+ 0 * * * * * * 8628 0 0
+
+K 3 4023 * 4485 3132 5751 * 4043 * 4320 4747 * 4554 * 2418 4690 3399 3298 3070 * 5098 3
+ 35 5366 * 1000 1000 * * 8869 1072 0
+
+L 4 * * * * 4072 5800 5089 3390 * 1853 4742 * * 5139 * 6178 5217 1270 * * 4
+ 0 * * * * * * 9251 0 0
+
+Q 5 5437 * 6073 3845 * 5395 5590 4969 4077 5377 6274 * 6402 1634 5059 3451 2324 4561 * 5490 5
+ 29 * 5668 * * * * 9540 0 0
+
+E 6 5331 * * 3482 * 4073 6532 * 4449 4594 6252 6445 4812 1231 4752 4494 3698 3583 * * 6
+ 41 5170 * 0 * 904 1103 9539 1201 1112
+
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+ 233 2872 6319 0 * * 0 9710 2691 1000
+
+G 8 3257 * 4401 3529 * 3961 5699 * 3316 6780 6710 4722 2199 3676 4348 3415 4791 4845 * 6471 8
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+
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+
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+
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+
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+
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+
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+
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+
+L 20 * * * * 3635 * 5247 2522 * 950 3801 * * 6592 * 6807 * 3181 * * 20
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+
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+ 0 * * 2807 222 0 * 10221 1000 1000
+
+C 22 6169 202 * * 4548 * 6390 * * 6811 * * 6232 * 5395 6961 * * * 7002 22
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+
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+
+A 24 4161 5604 * 6498 2781 6113 4254 3479 5876 2999 7121 6887 5487 5218 * 4928 4233 2929 * 2424 24
+ 254 3212 4218 812 1217 934 1069 10204 2998 1456
+
+S 25 6322 * 4945 3865 6088 5253 5065 6116 3395 5541 6715 4552 4006 4364 3928 1838 3144 6227 6120 4815 25
+ 145 6031 3640 1613 571 2471 287 10113 1392 2110
+
+G 26 3817 * 3180 4586 5264 2432 5114 4499 5472 4189 6825 4018 5529 3350 5296 3839 4057 5211 6115 5147 26
+ 250 4852 3007 2279 333 3109 178 10042 1599 3172
+
+F 27 4055 5293 4725 4483 4927 4040 6345 5804 4039 3978 5817 4986 4328 4061 5700 2130 3056 * 5795 4691 27
+ 95 6901 4181 1585 585 46 5006 10034 1102 4573
+
+T 28 4411 7074 3589 5247 7408 3583 5535 4949 3449 4330 6082 3484 4156 4128 5351 3299 3433 3940 7346 4499 28
+ 225 5109 3112 2109 380 2288 330 10203 1361 1917
+
+F 29 3406 7042 4403 5299 3558 4683 5934 5111 4324 3494 5299 4524 3945 4877 3597 3143 4569 4419 5823 4402 29
+ 129 5987 3845 587 1581 1615 570 10175 1129 3811
+
+S 30 4148 * 3678 3807 * 3669 6489 6091 4704 * 5538 3765 3165 3682 4684 2384 3605 4779 6750 6899 30
+ 415 3927 2441 1082 922 966 1035 10132 1922 4134
+
+S 31 4578 5880 3660 3242 6050 4092 3754 5149 4956 4808 * 2970 4332 4936 6647 3008 4477 4030 * 4013 31
+ 157 4014 4609 1732 517 2261 338 10004 1733 4850
+
+Y 32 4202 * 4082 5756 5224 4948 4678 6012 4894 3482 4580 4434 3159 4907 4160 3832 3359 4768 6868 2955 32
+ 75 5513 5132 0 * 251 2645 10030 1226 4621
+
+T 33 5233 7144 4544 5210 5598 4283 5757 5967 5523 4319 5494 4411 3719 4699 3591 3173 3295 3220 4463 3539 33
+ 47 5687 6343 1036 965 716 1355 10213 1239 2057
+
+M 34 6668 6289 * * 4293 7179 * 2529 4856 2369 2900 * * 7411 7198 * 5920 1607 5701 7059 34
+ 46 5416 6973 970 1031 * 0 10239 1280 1558
+
+S 35 3801 6917 7151 4626 3010 6831 3581 5923 4697 3794 7528 4267 7367 4484 4958 2956 3792 5185 6775 2728 35
+ 26 7407 6363 1000 1000 1211 816 10218 1000 1707
+
+W 36 * 7087 * * 6152 6007 * * 6361 4515 * * * * 6597 * * 5970 183 * 36
+ 55 4745 * 747 1307 * 0 10195 1561 1521
+
+V 37 6374 5179 6906 7357 2612 * 5072 3815 6141 3156 5471 6005 * 5583 6174 4251 5519 4567 5581 1536 37
+ 23 7028 6891 2672 246 800 1232 10195 1283 1521
+
+R 38 5256 6375 * * 4330 * 5287 6432 2125 4247 * 7905 7026 2705 1713 4986 5953 5125 5388 5486 38
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+
+Q 39 5580 * 4661 4588 6052 4525 4424 * 3389 4031 5430 6342 5655 1542 3723 3884 7072 4256 5552 6252 39
+ 47 * 4950 * * 2403 302 10241 0 1678
+
+T 40 4984 5572 3609 4366 5704 4139 6195 5225 3580 4813 5607 3676 3654 4348 3147 3403 3927 4095 * 5481 40
+ 49 7023 5274 2000 415 2996 193 10196 1005 2125
+
+P 41 3777 5787 4150 3465 5612 4207 6724 7026 4519 3183 * 4273 1877 5360 4328 3958 5253 5541 7267 * 41
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+
+E 42 5454 * 3054 3443 * 1623 6115 5999 4903 5763 7027 4429 4759 4871 4609 3143 4614 5042 * 7035 42
+ 74 5447 5206 2625 255 1971 425 10200 1422 1897
+
+K 43 4006 6927 4341 3397 * 3273 5959 6899 3264 4173 * 3506 5277 3323 3303 3435 4054 5974 * 6139 43
+ 84 5032 5279 624 1510 * 0 10140 1369 2123
+
+R 44 3457 6774 5108 4488 5384 2176 5623 5906 4123 4835 4995 4297 3900 4604 4530 3163 3884 4696 * * 44
+ 136 4220 4786 271 2547 4059 89 10108 1934 2572
+
+L 45 5041 5457 7405 4365 4159 * 5536 4738 5600 2039 * 5422 1857 4372 5484 4101 4435 4933 7337 * 45
+ 11 7079 * 0 * 3126 175 10019 1000 3004
+
+E 46 5650 6775 4274 2224 * 4467 4445 5271 5001 5068 * 4304 5031 2740 3939 4395 3175 3976 * 6753 46
+ 44 6843 5533 1585 585 1585 585 10052 1109 2783
+
+W 47 5576 5559 5792 5824 2676 5124 6192 4211 4473 2456 5297 5210 6101 5110 4069 4340 7060 3716 3557 3868 47
+ 33 * 5451 3322 152 2809 222 10082 1000 2533
+
+V 48 6699 5880 5282 6895 6828 * 6073 1854 5152 1561 4710 5443 5840 6820 * 4758 6007 3008 * 7004 48
+ 146 7388 3467 1000 1000 2643 252 10051 1000 2652
+
+A 49 2673 7250 * 6026 3199 2708 5338 2868 * 3029 5082 6718 6780 * * 4662 5214 3226 * 4218 49
+ 32 6937 6215 2807 222 * 0 9994 1011 3792
+
+S 50 4901 * 5892 4988 4052 5701 4850 4077 4263 4807 5208 * 5005 6804 3903 2601 3466 4806 5974 2211 50
+ 33 6854 6170 1000 1000 1543 606 9993 1018 4038
+
+I 51 5068 5238 * * 3686 4504 5166 2815 4784 3201 4809 6171 * 4163 6044 3077 4151 3089 6640 3572 51
+ 10 * 7183 2000 415 1840 472 10095 1000 3278
+
+N 52 3898 6659 4393 6322 3298 5056 4185 4993 5316 3820 6214 3938 5407 5823 4336 3491 4173 4248 5300 2671 52
+ 239 5460 2945 995 1005 * 0 10164 1287 2772
+
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+ 216 5357 3124 0 * 2871 212 9927 1252 4807
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+ 196 5975 3172 0 * 2160 365 9790 1028 5675
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+ 524 7102 1749 1000 1000 2920 205 9857 1000 5787
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+ 63 * 4552 0 * 1085 919 9428 1000 7213
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+ 25 6720 6969 0 * 2432 296 10009 1000 5322
+
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+ 48 6110 5794 594 1567 3548 129 10092 1096 4771
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+ 43 * 5085 * * 4305 75 10116 0 4686
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+ 30 5613 * 1215 813 1233 799 10031 1272 4811
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+ 34 * 5420 * * 1878 458 10135 0 3368
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+ 43 6921 5554 1585 585 3146 173 10129 1008 3111
+
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+ 45 7188 5377 594 1567 1352 717 10110 1125 3167
+
+V 64 6734 4539 4875 4802 2685 5241 * 4235 4320 3543 6252 4414 3641 5122 5587 4221 3516 3749 * 3298 64
+ 130 4045 5298 922 1083 2289 330 10183 1961 2694
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+K 65 4919 * 3960 3352 6337 3892 5467 * 2902 5991 5511 4781 3821 3562 3358 2876 3626 6105 * 6665 65
+ 55 4972 7475 0 * 472 1841 10161 1463 2703
+
+G 66 3777 * 2885 3452 * 2242 * * 3394 7064 * 4070 4297 4382 3830 3193 4900 6088 * * 66
+ 95 4462 5777 1240 794 2389 306 10241 1964 1532
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+ 22 * 6053 * * 2947 200 10235 0 1686
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+ 39 5966 6568 1287 760 806 1224 10229 1173 1836
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+ 48 5342 6981 1013 987 1354 716 10285 1404 1650
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+ 54 7186 5073 0 * 1110 898 10265 1000 1656
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+ 154 4616 4049 0 * 700 1380 10318 1638 2385
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+N 74 3785 * 5199 4219 6124 3030 4537 5422 3814 4525 6813 3460 3007 5432 3844 3597 3496 4897 7163 * 74
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+ 214 * 2861 * * 1550 603 10265 0 3407
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+ 49 5866 5958 538 1684 500 1772 10186 1133 4534
+
+N 77 5214 6145 4710 4354 7072 2619 4323 5593 3870 4450 6276 3351 5409 4529 3582 3917 2687 5699 * 6072 77
+ 62 6292 5085 498 1777 1674 542 10331 1105 2321
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+ 0 * * 1585 585 271 2545 10251 1000 2360
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+ 63 5089 6260 1563 596 1142 871 10365 1365 1125
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+ 63 4709 7902 590 1575 1940 436 10312 1742 1486
+
+L 81 7198 6451 * 5935 4401 * 6758 3927 * 472 6251 * 6542 * * * * 3530 6410 * 81
+ 0 * * 0 * 1073 931 10320 1000 1442
+
+Q 82 6551 * 5326 3387 6216 5950 4217 3799 3460 4398 6076 4637 4695 4272 3152 3759 2552 3777 * * 82
+ 57 * 4685 * * 939 1063 10322 0 1164
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+ 0 * * * * 2925 204 10300 0 1810
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+ 0 * * * * 2469 287 10302 0 1688
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+ 0 * * * * * 0 10302 0 1542
+
+L 86 2505 5919 7128 * 4604 5674 * 3430 * 1831 6368 6976 6405 * * 4620 3913 2141 * * 86
+ 0 * * 3585 126 2227 347 10302 1000 1542
+
+K 87 6050 * 4144 3263 6793 5223 4845 6622 3264 5282 7034 6999 4847 2454 2968 3717 2627 * 6651 7543 87
+ 0 * * * * * 0 10317 0 1398
+
+S 88 3730 * 6546 3297 5641 5268 * 4594 4347 3003 4125 * 2377 5620 5378 3558 3731 3564 6377 * 88
+ 20 6152 * 0 * * 0 10317 1143 1398
+
+E 89 3584 7052 4207 2411 * 4023 6093 6958 3547 6648 * 3548 * 4354 4503 2030 4384 7032 * 6917 89
+ 0 * * * * * 0 10317 0 1398
+
+D 90 6980 * 389 5061 * 4865 4590 * 6361 7007 * 5849 * 4639 5115 7149 6717 * * * 90
+ 8 * 7444 * * * 0 10317 0 1398
+
+T 91 2986 * 5267 3827 * 4803 5506 * 6232 6034 4417 4461 6974 4825 6121 1458 2702 5411 * * 91
+ 11 * 7052 * * 1301 751 10313 0 1509
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+A 92 1842 * 7283 5668 * 870 * * * 5170 * * 6694 * 5827 3738 * 5827 * * 92
+ 16 6536 * 480 1820 2275 334 10338 1144 1406
+
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+ 28 7304 6299 2000 415 1481 640 10339 1131 1293
+
+Y 94 * 5313 * * 4255 5989 5336 * * 5457 * * * * * 7322 6715 5552 6949 297 94
+ 19 * 6278 * * 1037 964 10309 0 1402
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+ 0 * * 3700 115 356 2194 10348 1000 1376
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+C 96 * 116 * * * 6731 * * 7008 5512 * * * * 7307 6100 5851 * * * 96
+ 19 6944 7735 0 * * 0 10331 1004 1000
+
+V 97 1577 4831 5485 4057 * 3143 5906 5399 4567 5826 5309 * * 3404 4524 3637 6875 3612 * * 97
+ 52 6893 5209 1976 423 1037 964 10059 1099 1088
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+ 146 3695 5724 1433 667 2243 342 9895 2253 1421
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+H 99 4718 6567 4526 3750 3955 3132 7054 3968 3803 4355 6861 6700 * 4914 3821 2350 5132 5830 4320 4358 99
+ 450 3033 2776 1545 605 1620 568 9896 2393 1715
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+E 100 3679 6537 3380 4299 6450 4246 4013 5439 4337 3794 6579 3813 4206 4019 3809 3482 3498 4783 6588 * 100
+ 300 4624 2764 3011 191 2345 316 9455 1435 3403
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+Y 101 4743 5371 4578 5293 6199 2946 6009 5218 4635 4601 5387 3723 4070 6449 3456 2535 3318 6205 6167 4575 101
+ 523 2451 3042 1178 842 874 1137 9306 2819 4415
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+ 465 5411 1988 1239 795 2043 401 9426 1502 3684
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+Y 103 4614 * 4475 5151 4930 3145 5450 6097 3999 3701 * 3174 6273 * 4327 2661 3980 5071 6196 3002 103
+ 216 4483 3404 935 1068 3579 126 9085 1421 5184
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+A 104 4542 * 2896 4146 5862 2892 * * 5842 4718 5932 2712 2944 5877 5716 3290 5205 5982 * 3667 104
+ 77 4949 5672 900 1108 316 2346 8846 1649 5555
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+M 105 4053 * 4575 2992 4710 5421 5553 4317 3650 4153 5025 6671 2916 3278 3932 4887 5006 3558 * 6409 105
+ 71 5016 5879 2357 313 608 1539 9573 1433 2225
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+D 106 3748 * 4031 3733 5409 4174 5542 3135 4270 2675 5045 6699 4500 4097 4422 5821 3718 4961 6835 4546 106
+ 108 4294 5573 1332 730 2530 274 9664 1583 1587
+
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+ 79 5070 5412 654 1457 561 1633 9623 1355 1755
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+W 108 6323 5505 6576 * 1091 6441 4930 4930 5681 4039 5443 * * 6510 4545 4994 5699 4982 3054 4363 108
+ 93 4494 5779 1784 495 661 1443 9653 1500 1648
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+G 109 5071 6672 * 5453 6330 1008 5454 6444 5649 6481 * 6599 5648 4628 4861 2645 4622 6598 6203 4925 109
+ 23 * 5955 0 * * 0 9662 1005 1436
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+Q 110 4642 6686 4222 3770 * 3617 6687 * 3991 6532 * 2823 2871 3264 3561 2652 4947 * * * 110
+ 48 4935 * 1038 963 1841 472 9596 1413 1813
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+G 111 3415 * 5425 * * 728 6449 5494 6202 5729 * 6598 4566 6469 4521 4081 5499 6526 6189 * 111
+ 50 4878 * 2493 282 711 1362 9642 1268 1554
+
+T 112 3802 * 4827 * * 6238 * 4257 * 4546 6316 5136 5502 5383 * 4255 822 4393 * 4961 112
+ 15 6603 * 1000 1000 * 0 9514 1018 1129
+
+T 113 5626 6596 6335 4874 4231 5441 4210 5700 1991 3745 5550 5017 4652 3007 2678 4745 5952 * 6644 6486 113
+ 15 6603 * 0 * 0 * 9514 1018 1129
+
+V 114 4479 * * 6586 6656 5290 * 3663 6401 600 * * * 4979 * * 6476 3111 * * 114
+ 0 * * * * * * 9560 0 0
+
+T 115 6297 * 4303 4910 5610 5022 4214 3213 6586 4137 * 5542 5407 6312 3903 3238 2268 2756 * 4758 115
+ 16 6463 * 2322 322 * * 9462 1000 0
+
+V 116 * 5245 * 6483 * 5442 * 3079 6387 4859 4609 5879 4842 * 6069 5189 * 645 * * 116
+ 37 5319 * 588 1579 * * 9453 1160 0
+
+S 117 6016 5075 * 3247 * 5285 6440 3768 4007 2859 6370 * 5368 4296 3526 2506 2723 5243 * 6505 117
+ 41 5174 * 1901 450 * * 9263 1259 0
+
+S 118 3392 * 3548 4085 * 2768 6026 6157 5033 4608 * 4574 3076 4164 4305 2800 4462 4534 * 6211 118
+ 120 3952 6014 2698 241 * * 9080 1459 0
+
+A 119 2336 4953 4822 4982 5846 3907 4352 5963 2938 5116 * 4273 3494 4496 4496 3675 4367 4707 * * 119
+ 0 * * * * * 0 8866 0 1000
+
+W 120 3277 * 4332 3322 * * 5577 3633 4178 4794 * * 2059 * 4057 3489 3717 3785 5911 * 120
+ 0 * * * * 0 * 8633 0 1000
+
+R 121 3642 5568 5794 4220 * 5767 * * 2967 4759 * 5568 2474 3210 4797 3640 2478 5624 * 5728 121
+ 0 * * * * * * 8612 0 0
+
+H 122 4730 5301 3924 3831 5571 * 2932 * 5313 2856 5387 2421 4449 5382 5358 3164 4315 5724 * * 122
+ 0 * * * * * * 8190 0 0
+
+P 123 5174 5195 * * * * 5124 5088 5048 5472 * * 590 * 5088 3586 5220 5032 * * 123
+ 0 * * * * * * 7650 0 0
+
+Q 124 * * 4337 2814 * * * * 4511 3298 * 4405 * 1626 3236 3271 4710 4517 * * 124
+ 92 4015 * 0 * * * 6387 1000 0
+
+F 125 * * * * 1912 * * 4413 * 1438 4098 * * * * 4404 4215 3272 * 4181 125
+ 0 * * * * * * 6143 0 0
+
+G 126 * * * 3630 * 1240 * * * * * * * * * 1630 3587 3480 * * 126
+ 0 * * * * * * 4393 0 0
+
+G 127 * * * 3101 * 390 * * * * * * 3057 * * * * * * * 127
+ 0 * * 0 * * * 3453 0 0
+
+//
+�HHsearch 1.5
+NAME 52f7b42c2dd929be3683545ebc8d1362
+FAM
+FILE 52f7b42c2dd929be3683545ebc8d1362
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:59:00 2013
+LENG 140 match states, 140 columns in multiple alignment
+FILT 112 out of 736 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC
+HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEC
+>ss_conf PSIPRED confidence values
+9837999999986175068996530012679899999999999860036984668999818981899988988899999982988677899985770454
+9999999999877516637999999999777423579719
+>Consensus
+xkxxxxxiklxvxaGxAxpxPplGpxLGxxGinixxfxkxfNxxTxxxxgxxvpVxixvxxdrsfxxxvxxPxxsxllxkaagxxxgsxxpxxxxxGxit
+lxxvxeIAkxKxxdxxxxxlxxxvkxVxGTaxSmGixVxx
+>52f7b42c2dd929be3683545ebc8d1362
+AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVT
+RKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
+>gi|156937968|ref|YP_001435764.1| 50S ribosomal protein L11P [Ignicoccus hospitalis KIN4/I]gi|156566952|gb|ABU82357.1| LSU ribosomal protein L11P [Ignicoccus hospitalis KIN4/I]
+-----KVLTFSVEGGNAKPAPPIKPALESVGLDPNEVVQKINEVTKRYKGFTVTVKVIVdPDTKEYEIEVEPPNITELLLKLAGAKAPSGDPIHQKVGDL
+PFEKVIEAALLKAPELTAKTLKGAVKTVLGTARAIGLTVDK
+>gi|76802860|ref|YP_330955.1| 50S ribosomal protein L11P [Natronomonas pharaonis DSM 2160]gi|119390738|sp|Q3INI5.1|RL11_NATPD RecName: Full=50S ribosomal protein L11Pgi|76558725|emb|CAI50318.1| ribosomal protein L11 [Natronomonas pharaonis DSM 2160]
+-----GTIEVLVAGGQADPGPPLGPELGPTPVDVQAVVNEINDQTEAFDGTEVPVTIDYDDDGSFDIDVGVPPTAALIKDELDFETGSGEPNEEFVADMS
+AEQLKTVAEQKLPDLLAYDTRNAAKEVAGTCVSLGVTIEG
+>gi|116335068|ref|YP_802563.1| ribosomal protein L11 [Candidatus Carsonella ruddii PV]gi|13272288|gb|AAK17071.1|AF274444_1 ribosomal protein L11 [Candidatus Carsonella ruddii]gi|116235349|dbj|BAF35197.1| ribosomal protein L11 [Candidatus Carsonella ruddii PV]
+---LKFKLKLILKPNKATPSSGIGPILGQYGINLIDFCNKFNDLT-KFIcLEKINVKIAIFNDNSYQILINTMSLSDYIKEKKNILSFSKKPGYNQLTNI
+NLNDVVEISYF------------------------------
+>gi|156098390|ref|XP_001615227.1| 50S ribosomal protein L11 [Plasmodium vivax SaI-1]gi|148804101|gb|EDL45500.1| 50S ribosomal protein L11, putative [Plasmodium vivax]
+---RIGRFNLVVLSGSAKPSASIGQTLGPLGINMMTFFKEFNERTKNIsKNVPIQVTLEPLNDRTYRFYLRTPTVVWFIRRCARVPMFSPTAKHHTVGSI
+TLAEVFHIAKCKRMDppLINLTLKSICKYIIGTCNSMGIKVC-
+>gi|7524989|ref|NP_050087.1| ribosomal protein L11 [Dictyostelium discoideum]gi|74894767|sp|Q23884.1|RM11_DICDI RecName: Full=60S ribosomal protein L11, mitochondrialgi|1088423|dbj|BAA04733.1| ribosomal protein L11 [Dictyostelium discoideum]gi|4958892|dbj|BAA78069.1| ribosomal protein L11 [Dictyostelium discoideum]
+----LVRLKLIIGAGTASMTPPLGPNLGQYGINSIEFFNDFNTETKe-lFEtGLALRVILWINVMKAFYFELQMPKISNLLKEYYKVECEAAKGGNVYIe
+KERLLKDCFKIAILLCTfnkaekQweqIEKKYLRITVLEILGTCRSCKIYVK-
+>gi|340052452|emb|CCC46732.1| putative ribosomal protein L11 [Trypanosoma vivax Y486]
+--RVLHNWRFFIRAGKATTGPPVGQEFSKLGLKAMDFAKSFNDRTKPFfkDDVELIVRIQVYFDKSYLFAIEPPPTAWFILRALRKKRRETGPVgvrGHY
+CALMTLEMAYEIAKMKPLCwgrPEYPLLETRVRRVVGQARRMGVCFI-
+>gi|71013111|ref|XP_758556.1| hypothetical protein UM02409.1 [Ustilago maydis 521]gi|46098214|gb|EAK83447.1| hypothetical protein UM02409.1 [Ustilago maydis 521]
+---AVNIIYLRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATGDWKGLRVTVQLTV-QNRQAAVSV-VPSASSLVIKALKEPPRDRKKEKNIKhgGN
+IPLDEIVEIARKMRFKSFAKSLSGTVKEILGTAQSVGCTVNG
+>gi|11496550|ref|NP_044561.1| ribosomal protein L11 [Toxoplasma gondii RH]gi|5231253|gb|AAD41147.1|U87145_16 ribosomal protein L11 [Toxoplasma gondii]gi|3377956|emb|CAA72240.1| ribosomal protein L11 [Toxoplasma gondii]
+-----KIIKLILHTELTNFLSSLSSILGPIGININLFFQEYNKRIKLKNNIDLPLHIIVYNDKSYVLNFNLIYTSFFFITkLQKVFKKK--QNKQYL---
+----IKKFSFLKQIKLFPKSNISICKTIKATLNS-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 1276 * * 4916 * * * * 4058 * 4330 * 4692 * * 2034 3317 5048 * 5032 1
+ 104 5049 4676 2487 283 * * 3727 1039 0
+
+K 2 3723 * * * * 3893 * * 537 * * 5089 5215 * 3525 * 5332 * * * 2
+ 0 * * * * * 0 3883 0 1000
+
+K 3 3815 * * 3669 5675 * * * 1171 5584 * * 3685 5917 2741 5294 4151 4635 * * 3
+ 144 3393 * 1440 663 0 * 4176 1138 1000
+
+V 4 4647 * 5368 * 4754 * * 2120 3561 2886 5559 * * * 5651 * * 1386 * 5325 4
+ 0 * * * * * * 4662 0 0
+
+A 5 4517 * * 6092 6190 6185 * 3117 2550 2352 6030 6200 * 3909 5026 5014 3911 2260 * * 5
+ 18 * 6363 * * * * 4810 0 0
+
+A 6 2465 * * 4603 6334 2704 5732 4137 2815 6352 * 5056 5308 4893 2831 4808 4281 4446 * 5683 6
+ 83 5011 5309 1756 506 0 * 5619 1124 1000
+
+Q 7 6928 6904 * 6379 4604 * 6656 2855 3014 3238 6294 4695 6781 6297 3197 * 3001 2362 * 4298 7
+ 0 * * * * 1147 866 5591 0 1092
+
+I 8 4915 * * * 4191 * * 1486 * 2214 6323 * 7046 * * * * 1824 5770 5727 8
+ 0 * * * * * 0 5594 0 1025
+
+K 9 * * 6993 6081 5301 * * 6329 1248 5316 6527 3725 * * 1889 5379 4116 5653 * 4814 9
+ 0 * * 1585 585 0 * 5594 1025 1025
+
+L 10 5532 7435 * * 4404 6597 * 2436 * 993 4984 * * * * 7265 3445 3351 * * 10
+ 0 * * * * * * 5641 0 0
+
+Q 11 5515 * * 4869 5793 * 5832 2934 3333 3499 6120 4599 5168 2814 2714 4774 3859 3623 6492 6148 11
+ 12 6861 * 0 * * * 5641 1000 0
+
+L 12 5670 4691 * * 6123 * * 1746 * 2480 5736 * * 6718 * 6475 6127 1336 * * 12
+ 0 * * * * * * 5682 0 0
+
+P 13 4409 * 7111 2649 5579 3928 5253 4872 3676 3995 * 5297 2159 4885 3820 5401 4000 4538 7737 6575 13
+ 30 * 5605 * * * * 5682 0 0
+
+A 14 877 * * * * 1513 * * * * * * 5353 * * 4053 5597 * * * 14
+ 0 * * * * * 0 5634 0 1065
+
+G 15 5733 * * 5597 * 273 * * 6575 * * 5500 * 3547 * 6065 * * * * 15
+ 0 * * * * * 0 5634 0 1065
+
+K 16 3760 * 4567 3529 * 5331 * 5510 1656 4829 4192 4321 * 3045 5039 3613 4923 5212 * * 16
+ 0 * * * * * 0 5634 0 1065
+
+A 17 396 * * * 6159 * * 4986 * 6456 6704 * 5109 6091 * 5875 5597 3439 * * 17
+ 94 * 3983 * * * 0 5634 0 1065
+
+T 18 3486 * * * * 4637 * * 2442 5589 5988 2873 5154 * 4886 2162 2237 5953 * * 18
+ 0 * * * * 551 1656 5538 0 1413
+
+P 19 2323 * * * 5561 7422 * * * 5261 4968 * 721 * * 4616 4460 5488 * * 19
+ 42 * 5108 * * 0 * 5642 0 1095
+
+A 20 2056 * * 5710 * 1718 5598 * 6075 5576 * 4304 5197 6323 * 2471 3194 * * * 20
+ 42 * 5132 * * * 0 5690 0 1110
+
+P 21 4139 * * 6040 * 6254 * * 5535 * * 6278 360 7368 * 3905 * * * 5119 21
+ 31 * 5535 * * 995 1005 5635 0 1276
+
+P 22 3846 * * 6158 * 6389 5594 * 4480 5696 * * 689 4542 * 3163 5538 5423 * * 22
+ 26 * 5802 * * 1290 759 5681 0 1225
+
+V 23 5156 * * * 4229 * * 2340 * 1255 5600 * * * * 5555 * 1943 * * 23
+ 0 * * 0 * 188 3036 5674 1025 1225
+
+G 24 2717 * * * * 470 * * 6506 5574 6125 * * 5206 * 4630 * 6337 * * 24
+ 0 * * * * * 0 5686 0 1000
+
+P 25 * * 5206 * * * * * 5536 * * * 569 2428 * 3894 6665 6154 * * 25
+ 0 * * * * * 0 5686 0 1000
+
+A 26 1583 * 6726 5231 * * * 3834 3029 5125 4812 5315 * 3494 6500 3721 3535 3537 * * 26
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+D 140 * * 2753 3905 * 1303 * * 2812 * * 4438 4068 6698 3525 * 6212 * * 5539 140
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+
+//
+�HHsearch 1.5
+NAME 530957bbdb4e54c1b80f11ba55b52a90
+FAM
+FILE 530957bbdb4e54c1b80f11ba55b52a90
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:30:49 2013
+LENG 241 match states, 241 columns in multiple alignment
+FILT 117 out of 2257 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHHC
+CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHH
+HHHCCEEEEEECCEEEECCCHHHHHHCHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9799999998179984467423799849979999999999889999999488878887299999974426878885227999413433556499999740
+3445789999999982859999875543344541660318999999999999996099999995876569999999999999997289989999788899
+96388899998997985089999874707899999875249
+>Consensus
+xixxxxlxxxxxxxxxxxlxxxsxxixxGxxxxlxGxnGsGKStLlxxlxGxxxxxxGxixxxgxxxxxxxxxxxxxxixxxxqxxxxxxxtxxenlxxx
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxlxxxxxxxxxxLSxGxxxrlxlaxalxxxpxllllDEPxxxLDxxxxxxlxxxlxxxxxxxtiixxthxxxx
+xxxxdxvxxlxxgxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+>530957bbdb4e54c1b80f11ba55b52a90
+DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA
+NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST
+VKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD
+>gi|258578069|ref|XP_002543216.1| hypothetical protein UREG_02732 [Uncinocarpus reesii 1704]gi|237903482|gb|EEP77883.1| hypothetical protein UREG_02732 [Uncinocarpus reesii 1704]
+RLEVTDLVVGYARDLPAVLRGLSFTVEKNQRNEC-------------NLFPLCPLKAHVQLHPPTQLSRPQ--GYRTAL-HQP-----------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------
+>gi|3644002|gb|AAC69488.1| ATP-binding protein [Pseudomonas aeruginosa]
+-LQTQALIKRYG--GLLVTDSVSIDVREGELHAIIGPNGAGKTTLINQLSGNFGRMRAMLCMRVRKSLHYLFTIGLAeGCCvrirsPPFSKSSQCSRtRC
+SAAMGaksqpvLLLAsYVGPGRS--RQSCPSCARDHPAVASd--------RCIGSRAGlwRTSSIGASHGFAAKPRVLLLDEPMAGMSPQESTSVIELLK
+SLKGSHSILLIEHDMEAvFALADRITVLVYGKVLCTGTPDEIRNNPEVKTVYL------
+>gi|170017200|ref|YP_001728119.1| ABC-type multidrug transport system, ATPase component [Leuconostoc citreum KM20]gi|169804057|gb|ACA82675.1| ABC-type multidrug transport system, ATPase component [Leuconostoc citreum KM20]
+-MEIKNYSVTFGNR--QLSTNLNVSFSKSKMNIVMGANGAGKSTLLDFVAGVGPKGAVGEKVG-----I----PSYKKIAYQLQQVHFFPtLTVAQTVEF
+YskltnKPKTKMYENAQTVRENLLDPI-----------WDTKMGQLSGGERQIVLTYGQCLLDKEVYIFDEPTSGVDETNAPVILSMINDLVINEHKIVI
+MTSHHSDQLKQFDLNLIT-----------------------------
+>gi|332716583|ref|YP_004444049.1| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium sp. H13-3]gi|325063268|gb|ADY66958.1| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium sp. H13-3]
+-IRLRSVTIC-RDAGgqdlerGFRLREAEVEIGRGDRLMINGEQGVNRRLLFAAMAGLWPWGQGSIEMPEQSDTL-----------FIAQHGYLPTGTLR
+EILAYPRapQRFVEADYVAALTACGLGEMAPRLDE-----HIRWDKKLDSDEQASIRIANALLLKPKFIVIDDLLEGLEKQTQDTLAEVLNG-IDGVAII
+YIGRSE---TFLSVLTPALAH----------------------------
+>gi|120436602|ref|YP_862288.1| ABC-type transporter ATP-binding protein [Gramella forsetii KT0803]gi|117578752|emb|CAL67221.1| ABC-type transporter ATP-binding protein [Gramella forsetii KT0803]
+-LNIEGLEASIE-GET-LFKNVDINLAKGDKVVVFSKDSRATSAFYEIINGKQNAVNGKFQWGVT-----------TSQSYLPADNSdffDNDLTLVDWL
+RQWatsEEEREEVYIRGFLGKMLF----------SGEEALKTCRVLSGGEKVRCMLSRMMMIRANVLMLDEPTNHLDLESITAFNNSLKNF--KGTVLFT
+THDHEFAQTlANRVIELtPGGVIDRYLSFDEYMSD--------------
+>gi|295115774|emb|CBL36621.1| ABC-type sugar transport system, ATPase component [butyrate-producing bacterium SM4/1]
+---------------EPYLQDVSFDVREGEIFGLYGLVGAGRTELLETMFGICTRAAGRVYFRNRLMNFNSAkEAIEHGFALITEErkanGLFLKGDLTF
+NTTIANLDQYKVGmaLSDQKMVKATAQEIKIMHTKCMGPD-DMISSLSGGNQQKVIFGKWLERSPQVFMMDEPTRGIDVGAKYEIYELIIKMANrERPLL
+LFPLRCRRFWESQTVSELCQTVIFLELSTRR------------------
+>gi|254674125|emb|CBA09909.1| ABC transporter, ATP-binding protein, putative [Neisseria meningitidis alpha275]
+AIKFEHVDFSYEAGKP-LLNGFNLTIRPGEKVGLIGRSGAGQIHHRQPAFALLRTAKRHG-FDRRAGHKRRHPRIFTRPNRFGHARYLAAAPFRARQHYL
+RPPRRDRCRNGFRRRTRRSR--------------------------------------------------------------------------------
+-----------------------------------------
+>gi|330961459|gb|EGH61719.1| ABC transporter family protein 61 [Pseudomonas syringae pv. maculicola str. ES4326]
+-VTLEH------CELPYgpPDSRFIdLTLHGPMRVAVIGPNGCGKSTLLKVIAGQLAP-ASGIARHIL------------RTHLIDQHAQTFDPehGIEQ
+VLRNELGTVEEGRFrQVFANA------------GLDARQMAtPFGRLSGGERLRATLAWLAGGrprTDATVAARRSEQSSRHRGAGSSRAVARTIQR--R
+AHRECSRS-------------------------------------------
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
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+//
+�HHsearch 1.5
+NAME 530b8b90a2b272c2660145f9c38cb283
+FAM
+FILE 530b8b90a2b272c2660145f9c38cb283
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:10:30 2013
+LENG 60 match states, 60 columns in multiple alignment
+FILT 153 out of 1152 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEHHHEEECC
+>ss_conf PSIPRED confidence values
+997799992251899988135579999999881599979999679978987666689985
+>Consensus
+xxxxxxxalxxxxxxxxxelxxxxgdxixvxxxxxxxwxxxxxxxgxxGxxPxxxvxxxx
+>530b8b90a2b272c2660145f9c38cb283
+CGAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYG
+>gi|193586979|ref|XP_001952482.1| PREDICTED: tyrosine-protein kinase CSK-like [Acyrthosiphon pisum]
+-----NTGRTHFGTTPQQLVTHSFCDRASPVSpVTNIGSYSSF----------VQHVKD--
+>gi|119593683|gb|EAW73277.1| protein kinase C and casein kinase substrate in neurons 2, isoform CRA_a [Homo sapiens]gi|119593684|gb|EAW73278.1| protein kinase C and casein kinase substrate in neurons 2, isoform CRA_a [Homo sapiens]
+----SSyEKTQSYPTDWSDNESNNPfsstdangeLQSIRrQRHLGERSSIPGPV-----------------
+>gi|302414846|ref|XP_003005255.1| AbpA [Verticillium albo-atrum VaMs.102]gi|261356324|gb|EEY18752.1| AbpA [Verticillium albo-atrum VaMs.102]
+---AQQELREANIPAAQPPAGAQAGGQRALIHSARANtsptlkWstrtggWAPTRrARAASSLATTSSSSRT-
+>gi|161077253|ref|NP_001097376.1| endophilin B, isoform D [Drosophila melanogaster]gi|157400406|gb|ABV53852.1| endophilin B, isoform D [Drosophila melanogaster]
+-----DKSLTNLLEDFHIEFDTTAvSTVIFVTECSpvNEDYMYGK-QGLLKGLVPRAFVEML-
+>gi|32565949|ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans]gi|24817571|emb|CAA19487.2| C. elegans protein Y37A1B.2b, confirmed by transcript evidence [Caenorhabditis elegans]
+-----LRKAVENYPtPPGGSSEDAHRQLLerrrkQMLRrHTCSTLIKQDTSASPHKMKPpilmeeedEQHSTGK-
+>gi|55648067|ref|XP_512320.1| PREDICTED: cdc42-interacting protein 4 isoform 6 [Pan troglodytes]
+----HCVAIYHFEDlGPPPPPSQGPARALSLWPrVKTSVlWKKTKGTAGP-GSGGKREAR---
+>gi|328776214|ref|XP_393399.3| PREDICTED: tyrosine-protein kinase CSK [Apis mellifera]
+---------------MTTHSNVTTPNITSHMNtGSTPVILTSNVTNPSNPAALS--VNP--
+>gi|125805800|ref|XP_694393.2| PREDICTED: myosin-VIIa [Danio rerio]
+-RSMYAVAIQD-lsRqgASSALAIFWQGSHIAELQTrrcAVYHkGWRIFSRRrVDKSKeredksnwgsflRCNSDSA----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+C 1 * 239 * * * * * * * 3838 * * * * * * * * * 3593 1
+ 0 * * * * * * 4997 0 0
+
+G 2 4750 * 4560 3611 * 1647 5557 * 5613 * * 5702 2796 5595 2710 2826 * * * * 2
+ 21 * 6100 * * * * 7655 0 0
+
+A 3 2403 * 4947 5049 6175 3388 * 5143 4706 5223 4648 6224 4238 4665 4203 3031 3162 3357 * 6174 3
+ 149 5918 3617 0 * * 0 8291 1008 1000
+
+E 4 4245 5209 4783 3854 * 4179 5441 6375 3725 3710 4716 5639 3982 3724 2936 3098 3716 4661 * 6340 4
+ 0 * * * * * 0 8817 0 1649
+
+Y 5 * * 6524 5163 3582 6408 3705 5174 3304 2775 4568 7180 6618 4355 3089 4170 3475 5048 7011 3250 5
+ 13 * 6748 4000 93 0 * 9377 1080 1649
+
+V 6 2189 3271 6653 6820 3667 4694 * 5203 * 3323 4822 5447 6696 6599 * 4475 6531 2508 6406 3435 6
+ 36 5764 7254 0 * 0 * 10038 1212 1000
+
+R 7 5640 7226 * 4172 7334 5029 5297 3732 2768 3624 7093 7336 6817 4719 2176 5823 3860 2485 * 7502 7
+ 0 * * * * * 0 10071 0 1026
+
+A 8 1205 4500 6025 5688 7497 4287 * 5585 4605 4839 7250 * 4758 * 5335 4359 4085 2782 * 6347 8
+ 31 6235 6943 4562 62 * 0 10147 1098 1026
+
+L 9 6081 * 6236 5384 7372 * * 2751 4749 1343 4223 6186 6292 4148 3802 4580 4075 4616 7344 7449 9
+ 8 * 7419 * * * 0 10133 0 1224
+
+F 10 4550 4439 5286 4341 3325 5691 4445 6270 4157 5789 7246 * 5773 4297 4482 4797 3680 4825 5734 1758 10
+ 28 6721 6638 2000 415 * 0 10152 1032 1375
+
+D 11 4068 7236 1809 3485 * 4686 5355 * 5720 * * 3023 3718 6032 4497 2522 4505 * * * 11
+ 35 7581 5756 1000 1000 2302 327 10113 1000 1601
+
+F 12 7135 6182 5270 6352 1756 6444 3817 * * 5360 * 4713 4486 6969 5806 4267 6736 6528 5881 1555 12
+ 26 5826 * 3907 100 279 2507 10036 1542 1807
+
+N 13 4877 7464 3583 2660 7005 4226 4366 6232 3753 4855 * 4420 4446 4762 3598 3584 3487 3813 7253 5351 13
+ 43 5099 * 869 1144 * 0 10180 1445 1026
+
+G 14 2165 6924 6188 4784 * 2534 * 5989 4692 * * 6341 2199 6191 5787 2811 3731 6391 * * 14
+ 131 4044 5256 214 2860 1413 679 10216 2096 1130
+
+N 15 3575 7536 3916 3252 6368 4823 4985 6731 3486 6801 5521 4184 4077 3723 3269 3258 3485 5050 * 6225 15
+ 0 * * * * * 0 10180 0 1642
+
+D 16 3669 7156 3154 3507 5178 3801 4633 6884 4232 * 5984 3416 3273 5740 3945 3390 3911 5618 6525 5444 16
+ 128 3877 5910 2116 378 2343 317 10253 2215 1642
+
+E 17 3141 6956 3307 3161 * 3654 4990 6090 4746 7083 6375 4352 2558 4058 4913 4108 3358 6558 7557 * 17
+ 22 6049 * 1756 506 655 1454 10227 1169 1834
+
+E 18 5300 6698 2095 4558 7267 2342 5406 5612 4422 5802 * 4229 4031 5064 3977 4069 3883 5146 7184 7481 18
+ 59 5090 6569 2234 345 * 0 10270 1446 1221
+
+D 19 4221 * 3147 1417 6960 4194 5416 * 6962 4353 5506 5830 3736 4518 4947 3795 4742 5971 * * 19
+ 49 5717 6152 1681 539 1555 600 10220 1247 1424
+
+L 20 5331 7470 * 6002 5553 6344 7037 2652 7252 1072 5125 7314 5477 5708 5269 4104 * 3455 7076 6381 20
+ 37 6246 6339 2362 312 * 0 10239 1150 1540
+
+P 21 3166 5858 4332 3935 5776 3832 7537 6960 4978 7006 6379 4020 4142 4679 5159 1861 3123 5720 6853 * 21
+ 33 6493 6408 0 * 2012 411 10193 1097 1756
+
+F 22 4456 * 6071 * 1925 * 4950 3207 5875 2039 4297 6608 5089 6034 6401 5446 6796 3255 5578 * 22
+ 12 6949 * 3585 126 602 1552 10181 1001 1758
+
+K 23 4781 7358 4306 3534 7424 5367 4969 * 3005 5472 * 4159 4327 3239 2847 3198 3358 4462 * 6807 23
+ 32 6354 6730 1000 1000 * 0 10300 1096 1170
+
+K 24 2875 7195 5951 3021 5268 6302 6101 4562 2270 5433 * 5189 3696 4961 3459 4033 4389 4186 * * 24
+ 44 5290 7799 2143 370 1772 500 10279 1373 1345
+
+G 25 5238 5647 3736 5720 * 823 * * 4646 5788 6625 3691 5445 5432 4541 4067 * * * * 25
+ 28 6307 7183 2862 214 0 * 10290 1146 1311
+
+D 26 3852 7250 1488 2251 * 3973 5661 5938 6815 * 7221 5241 5455 3613 4679 4961 4928 * * 7091 26
+ 20 6193 * 1272 771 * 0 10304 1138 1018
+
+I 27 4440 6046 * 4009 5028 7119 5529 2708 3748 3598 5554 6265 5275 5235 3690 3723 5043 2311 * 4823 27
+ 25 * 5845 4000 93 * 0 10304 1000 1018
+
+L 28 4863 6688 * * 4133 5588 6631 1973 * 2083 7225 * 5165 6158 4819 * 6490 2116 6323 4678 28
+ 33 5458 * 2719 238 * 0 10237 1335 1404
+
+R 29 4391 7202 4470 3049 4591 5228 5503 4375 4112 3215 7225 4751 5500 4533 3952 3456 3394 3721 6481 5123 29
+ 15 6618 * 0 * * 0 10237 1077 1404
+
+I 30 4951 * 5774 6342 6988 6154 5262 2253 * 2431 4796 6116 4860 4813 6631 5983 6975 1581 * 7513 30
+ 46 5331 7324 0 * * 0 10237 1347 1404
+
+R 31 4199 6272 5963 5667 6486 4639 5276 2966 5191 1978 6474 6010 5101 5294 4290 4556 3948 3026 5710 5107 31
+ 22 * 6068 * * 1542 607 10222 0 1584
+
+D 32 5101 5590 3976 2443 6027 3846 4125 7111 3487 5246 * 4143 4878 3903 3417 3514 5031 4752 * 4989 32
+ 353 2247 7339 600 1555 1608 574 10232 4792 1657
+
+K 33 4776 5314 3305 3216 6702 4034 5684 4842 2832 4984 6237 5151 5095 3971 3605 3860 3586 4459 7093 6499 33
+ 178 4374 3878 2139 372 * 0 10286 1933 1548
+
+P 34 4480 5551 2916 3630 * 3311 4762 4200 5281 4241 6342 5074 4736 4601 5095 2992 3069 4515 * 6454 34
+ 153 4124 4536 4104 86 827 1197 10128 2185 2816
+
+E 35 7247 4791 2741 2842 5480 3567 4667 * 5195 6336 7135 2874 4235 5213 3854 3914 3599 7166 7058 5249 35
+ 47 4971 * 2202 353 1024 976 10180 1561 2562
+
+E 36 4520 6743 2567 3308 6353 3230 5038 5428 3911 4806 6261 4048 4102 5818 4396 2999 4177 6411 7176 7233 36
+ 182 3449 5212 1113 895 2044 401 10235 2693 1761
+
+Q 37 5548 7121 2628 4081 * 1331 5278 5980 4944 5115 7584 4035 5864 6598 6986 4715 4857 4573 7180 5206 37
+ 58 5017 6894 3638 121 1115 894 10238 1605 2078
+
+W 38 7601 * * 5909 3870 5000 6033 5781 6406 4395 5525 * * 6965 5845 5163 6348 5229 706 4089 38
+ 13 6845 * 2585 263 * 0 10258 1047 1671
+
+W 39 5011 5175 5376 * 3559 5450 * 3679 5498 3464 4587 6816 5918 7102 4981 5865 6040 4224 1546 3569 39
+ 44 5621 6655 2555 269 1587 584 10258 1268 1671
+
+N 40 4453 * 5007 4675 4554 5604 7621 4745 2850 3294 5512 5771 4317 3774 3046 4189 4598 5083 4092 3856 40
+ 30 6221 7116 4731 55 1994 417 10243 1153 1631
+
+A 41 2941 4222 6105 * 6335 1414 * 5333 5522 * 6248 7330 5693 5444 4741 4922 4508 2440 * 7137 41
+ 46 6649 5540 0 * 1254 784 10268 1105 1570
+
+E 42 4483 5704 4483 3125 5810 5836 4916 7070 2834 5107 6185 5833 6556 4485 2299 3888 3279 4234 * 5787 42
+ 539 3361 2220 2630 254 1180 840 10275 2861 1772
+
+D 43 4391 6869 3480 4984 6960 4585 3812 6024 3746 3348 * 2841 * 6003 3011 3507 3603 4219 * 6595 43
+ 91 4030 * 1079 925 245 2680 9833 1843 4890
+
+S 44 3760 4454 4518 4709 7247 4290 5536 4939 3521 2449 4939 6362 4786 4264 4539 4234 3854 3355 * 5604 44
+ 507 1773 7993 385 2095 * 0 10204 5624 1626
+
+E 45 4231 6751 3172 3732 6162 3135 5295 * 4097 6238 6938 3235 4499 5440 3725 3271 3069 4956 * 6154 45
+ 101 3891 * 1489 636 3285 156 10209 2139 1710
+
+G 46 5152 5998 4534 4393 6147 1099 6925 * 3688 5749 7629 4195 4754 4328 4807 3598 6029 * * * 46
+ 28 5718 * 1488 636 2068 393 10176 1229 1626
+
+K 47 3850 6514 5519 3033 6145 5405 5278 4584 2437 5284 7591 4737 4689 3429 2907 3413 5135 5554 * 6806 47
+ 33 7143 6024 0 * 1691 535 10195 1000 1447
+
+R 48 3533 * 6160 2660 6172 5617 6013 4184 3774 4136 7198 4577 5079 4071 3370 3172 3852 4005 6298 5889 48
+ 72 4367 * 2764 230 435 1942 10120 1749 1530
+
+G 49 4555 6060 6051 5144 6924 621 * 6990 4519 7447 * 6227 4473 7072 4792 4156 * * * 5308 49
+ 91 4707 5447 2812 222 * 0 10147 1573 1032
+
+M 50 4286 6572 6773 6372 3110 * 5915 3541 7134 2234 4619 6300 5549 * 5821 3642 6330 4820 2707 3246 50
+ 46 4980 * 4186 82 1766 502 10064 1439 1521
+
+I 51 4165 5515 6392 * 1757 6036 * 3113 5405 3279 6036 * 5213 * * 5118 6502 2004 * 5274 51
+ 46 4987 * 1484 638 1863 464 10096 1513 1329
+
+P 52 5608 * 5547 5669 6432 5520 5828 * 6301 5064 6787 5675 473 7012 6235 4604 5292 * * 6895 52
+ 51 4849 * 2001 415 956 1045 10087 1526 1200
+
+V 53 2697 6314 * 4659 5386 3886 6535 4485 3577 3761 7291 5491 5819 4458 4292 2351 3825 3653 * * 53
+ 28 6960 6440 1000 1000 * 0 10094 1000 1021
+
+P 54 4275 * 3763 4492 6078 4370 6810 5566 4887 7045 6223 2595 5493 3574 3685 2357 3203 6160 * 6051 54
+ 0 * * * * * 0 9931 0 1255
+
+Y 55 7321 4211 7169 6049 2712 5315 3261 3985 6981 4097 6868 4544 5731 5469 6054 3727 * 4987 5808 1871 55
+ 52 4821 * 2832 218 778 1262 9895 1479 1255
+
+V 56 3603 6191 * 6093 5231 5347 * 3210 * 2400 6293 * * 5875 * 3893 4681 1372 6724 6836 56
+ 9 7254 * 0 * * 0 9872 1000 1021
+
+E 57 3512 6611 4260 2251 * * 4972 6923 2600 4892 * 5073 5866 3736 3695 3421 3931 5440 6401 6920 57
+ 21 6080 * 0 * 1388 695 9692 1092 1125
+
+K 58 4753 * 4908 2402 6884 4856 * 3475 4135 3467 4640 6040 2621 4691 3987 4672 5748 3724 * 7189 58
+ 53 4802 * 3768 110 0 * 9505 1258 1021
+
+Y 59 4614 6726 * 4065 5863 * 6562 2495 5193 1720 6600 * * 6435 6387 5764 4965 2294 * 3927 59
+ 74 4318 * 0 * * * 8876 1089 0
+
+G 60 3639 * 2889 * * 2045 5184 * 4430 * * 4321 5026 * * 1615 4026 * * * 60
+ 0 * * 0 * * * 7177 0 0
+
+//
+�HHsearch 1.5
+NAME 5364a334c335e7d706a5569fbc3f602d
+FAM
+FILE 5364a334c335e7d706a5569fbc3f602d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:04:47 2013
+LENG 165 match states, 165 columns in multiple alignment
+FILT 114 out of 1143 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEEEEEEEECCEECEEEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
+EECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCCEEEEEEEECC
+>ss_conf PSIPRED confidence values
+9988899999999880216999996776917999999885236782536988899877957981672578888887545752255553104688769998
+43799985556999936884348981699998837999999985688899893457999928309
+>Consensus
+xxxxxvxxdixixxtxxGxixixLxxxxaPxxxxnFxxlxxxxxgxxYxgxxfxrixxxxxiqxGxxxxxxxxxxxsxxxxxxxxexxxxxxxxxGxvsx
+xxxxxxxxxsxFfIxlxxxxxldxxxxvfGxVxxGxxvlxxIxxxxxxxgxPxxxixIxxcgxlx
+>5364a334c335e7d706a5569fbc3f602d
+MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSM
+ANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
+>gi|156848109|ref|XP_001646937.1| hypothetical protein Kpol_2000p44 [Vanderwaltozyma polyspora DSM 70294]gi|156117619|gb|EDO19079.1| hypothetical protein Kpol_2000p44 [Vanderwaltozyma polyspora DSM 70294]
+---------------TIGSFGVTLDCKDSSVEAYNFLKLCKAN---YYNYQCFYDIRKGHSIEFGDGLYR-FKDRKELrvHSTFINsllNknnvdtivpe
+latcsSSVNTKEADMGRIGfktTFKDKERLIGSKVVVAlTDwDSNDGSV--SFFGRVnRRNWDVLDNFNRaIIDEKNELVTDIRI-------
+>gi|85710701|ref|ZP_01041765.1| putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type [Erythrobacter sp. NAP1]gi|85687879|gb|EAQ27884.1| putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type [Erythrobacter sp. NAP1]
+---------------NARKVVIQLMPApFSQGWTQNIRTLAR--AEW-YDGISVNRVQDNYVVQWGDPgydnpesgetetkplpdglnvmseadyaatgl
+isvpdprgrprinytlgaammrnamiaangaielpatftealeSGETPPPIKLETGDAYGELATLALgwpvtgsfgnaeepanqfwpvHC-YGMVGVGRN
+ySPDTGsGAELYTVIGHAPrHLDRNIALVGRIVSGMEHLSSLPRGSGTLGfyteeeadkrMPILSIRVAS-----
+>gi|328865705|gb|EGG14091.1| phosphoglycerate/bisphosphoglycerate mutase [Dictyostelium fasciculatum]
+--------------TSKGGIIVELYRDKARLSCERFTNQI--EVGR-YQDTIIHRIVKNLFIQCGRYSINSSSLDNSLMNNNDSSsnsnnddsitsftst
+stttsiydnnnnnnntqptslnssstilnqlyvdssdddeleqeqqqddivyisdnkesnltnskkesssskqqelldkdqfkrlikenNDNGLSFNERG
+LVAMGSYN------QIIFTLDACGALNRKYPIIGRVHpSTMQMLCILESTPTnESNCPIDPIFLTN-----
+>gi|156839035|ref|XP_001643213.1| hypothetical protein Kpol_457p6 [Vanderwaltozyma polyspora DSM 70294]gi|156113813|gb|EDO15355.1| hypothetical protein Kpol_457p6 [Vanderwaltozyma polyspora DSM 70294]
+--------------TSKGNLNVELWAKECPIASKLFIETCL--SKF-WVGSSLGEFgedGSKLYIDFDGDTKF---------KDSIAMEsNSRLLFNREG
+LLGW-----DIDAGLWFVTTSEKC-DGKRKILIGKIV--------------------------------
+>gi|309366416|emb|CAR98339.1| hypothetical protein CBG_27914 [Caenorhabditis briggsae AF16]
+----RIIFDVVSGNLMMGRIIIMLSN-FEPELRKHFYKMADGNRTnRSFSGTIFHRKTNKFIEGGVLTSSNDTSTVESLYTTKPVNNPKFYSKY--VMIA
+NRNIHDDYRGTRFLITTSPLLHCDQDHIPLGTIVCGREIFDQIAELPcDQDGKFLSTLSIHHS----
+>gi|321456758|gb|EFX67858.1| hypothetical protein DAPPUDRAFT_330682 [Daphnia pulex]
+----KCYFRMNINGVMSERIIVQLEKAKAPIMCAKFIEMCTKKDG--YKGSKIYKTIKGesVFCSSGWFHTYDLDQRCDVFTADKSDVAEQRGSM-RFQI
+KKSENGIAQVSTEFNVILANRPRHHRSTSVFAQIIEGLTVFDQISGMDMKQNR----VIFAECGV--
+>gi|159482122|ref|XP_001699122.1| hypothetical protein CHLREDRAFT_193502 [Chlamydomonas reinhardtii]gi|158273185|gb|EDO98977.1| predicted protein [Chlamydomonas reinhardtii]
+---------------EMGDVVVKLLPDLAPASVRELRRMAALLAleGTGCDGCKLYRSEVNFLVQGVIRHPG------AYVATPRRPNPPQKKMMERGLA
+CWAGGM---GGPDWFVNLIDQSGFGDDHLCWGKI-DDMSLLDAIVKLPTK-----------------
+>gi|308813275|ref|XP_003083944.1| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (ISS) [Ostreococcus tauri]gi|116055826|emb|CAL57911.1| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (ISS) [Ostreococcus tauri]
+--------------LNEATLEITVDGYNAPLTAGNFVDNVR--RGV-YRNAPMRRSET--AILGGASN--pDAPSVPleikasdafdPSYRFPLDvqnGE
+aIPSIPLSINGSVAMARS-sdGQSDKDQFFVYLFDkrsaglggLSFEEGEFSVFGYVTKGEEYLGSI-----------------------
+>gi|342181197|emb|CCC90675.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
+-PRPIVTAAVLIE-TSVGTFVVDLYGADCPAATGELVNLCRCK---YFNGCIATEVIPDSvlifshpveALQQQTFASLLDMgGMRHLPLRDGTLdatst
+rqavyaewkrmrrhvarpqdgakgavgaenvefvirpplEAPGTIRY-SGLLLLevpqvesgATTVCHPLKMRLLITLSnrHLDYLEGQFIVVGEVREGC
+DVVEKMRAAPhrrltTSSGittRPSRLVRIKHTTVLP
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 344 2239 * 0 * * * 2117 1037 0
+
+V 2 * * * * * 3061 * 2712 3104 * * * 2371 * * 2840 * 1846 * * 2
+ 0 * * * * * * 3309 0 0
+
+N 3 * * * * 4533 * * * 3628 * * 1243 * * 2108 4399 2936 * * 4530 3
+ 198 2963 * 0 * * * 5539 1342 0
+
+P 4 4745 * 4923 * * * * * 2980 4963 * * 928 3886 3333 3668 * * * * 4
+ 0 * * * * * * 6329 0 0
+
+T 5 * 5213 * 5386 * * 4415 2952 2786 5277 * 4128 * 5241 2765 4350 3611 2971 * 3144 5
+ 0 * * * * * * 7053 0 0
+
+V 6 3528 3743 * * 5320 * * 2644 * 5411 * * 5627 * 4958 * 5257 1025 * 4054 6
+ 0 * * * * * * 7121 0 0
+
+F 7 * * * 5571 1787 * * 5243 * 5438 * 4730 * * 5333 3653 4105 5060 5006 1402 7
+ 0 * * * * * * 7151 0 0
+
+F 8 5021 * * * 1512 * * 3770 * 1710 2538 * * 5538 * * 5427 5464 * * 8
+ 0 * * * * * * 7159 0 0
+
+D 9 5021 * 957 3194 4572 * 4317 * 4787 * * * 5618 4766 4986 * 3931 4011 * * 9
+ 134 * 3492 * * * * 7159 0 0
+
+I 10 * 5409 * * 3094 * * 1576 5528 3593 3517 * 5403 * * 4996 * 1851 * * 10
+ 76 5166 5419 0 * * 0 7074 1034 1328
+
+A 11 2065 * * 2512 * 4080 * 4214 3276 5035 * 4930 * * * 2803 3851 3420 * * 11
+ 0 * * * * * 0 7084 0 1445
+
+V 12 5347 * * 5365 * * 5132 1439 3998 4637 5789 * * * 4620 3550 5798 1791 * * 12
+ 40 5188 * 1000 1000 * 0 7207 1028 1445
+
+D 13 4344 * 2461 2987 4794 3061 * 4721 5855 3758 * 2225 5635 * 5479 4151 5723 * * 5245 13
+ 152 3739 5300 750 1303 * 0 7237 1333 1445
+
+G 14 6053 * 3200 3171 * 1926 6010 * 4208 6037 * 2897 6221 5792 4424 4450 3217 4276 * * 14
+ 44 5062 * 957 1045 248 2661 7365 1111 1631
+
+E 15 4673 6260 6287 3831 * 6295 * 4398 3668 4853 * 5579 * 4419 4213 6097 985 4777 * 6218 15
+ 37 5312 * 2010 412 0 * 7893 1166 1005
+
+P 16 5243 * 3940 4392 4600 6766 6673 5580 5104 4641 5280 2984 3055 5048 5079 2210 2884 6744 * 5854 16
+ 0 * * * * * * 8197 0 0
+
+L 17 3071 5943 6549 4058 4148 6004 6910 4287 2767 2513 4514 * 6736 4315 5657 5072 4664 3341 * 4344 17
+ 0 * * * * * * 8240 0 0
+
+G 18 5765 * * 5698 * 166 6299 * 6761 * * * * 6558 5571 * 7005 6694 * * 18
+ 27 6334 7340 0 * * * 8249 1060 0
+
+R 19 6314 6360 2525 4852 6713 6526 * 7170 3645 5871 * 3863 4917 6954 1759 3543 3195 4567 * * 19
+ 0 * * * * 0 * 8273 0 1000
+
+V 20 * * * * 2875 * * 1530 * 2088 3856 * * * * * * 2230 * * 20
+ 0 * * * * * * 8262 0 0
+
+S 21 6937 * 4117 3945 6778 5492 * 2852 4764 4080 * 4577 6915 5372 4673 3896 2931 1866 * 5856 21
+ 0 * * * * * * 8262 0 0
+
+F 22 4437 7016 * * 3058 * * 1086 * 3285 4796 * * * * * * 2207 * * 22
+ 0 * * * * * * 8262 0 0
+
+E 23 5717 * 2962 1499 * 3400 * 4754 4882 5112 5727 * * 3030 3920 6894 4440 4557 * * 23
+ 16 * 6480 * * * * 8262 0 0
+
+L 24 6453 * * * 5721 * * 4364 * 364 6335 * * * * 6613 * 3040 * * 24
+ 14 * 6709 * * * 0 8233 0 1016
+
+F 25 5073 * 2802 5082 2071 6585 5234 * 5673 4264 6432 4645 * * 4506 5436 * * 4081 1873 25
+ 0 * * * * 896 1112 8216 0 1129
+
+A 26 3480 4683 4285 4911 * 2502 5933 * 4547 5742 * 3538 2637 * 3505 4520 3798 4200 * 5176 26
+ 62 5973 5262 617 1523 * 0 8268 1080 1000
+
+D 27 4513 6828 1490 2538 * * 6061 * 3046 6811 * 4042 * 6016 4998 4419 4201 5423 * 4563 27
+ 71 5616 5173 498 1777 370 2143 8257 1116 1309
+
+K 28 3328 6326 3837 2776 4365 4331 5053 4460 3384 3349 5600 6048 * 5084 5215 4686 5204 3521 4302 6892 28
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+D 160 5552 * 2651 4267 * 3591 2966 * 2941 * * 3211 * 5828 3610 2641 4764 5516 * * 160
+ 0 * * * * * * 7519 0 0
+
+C 161 4491 779 * 5106 * 5560 * 5453 * 5445 * * * * * 3269 4381 3001 * * 161
+ 0 * * 0 * * * 7185 1000 0
+
+G 162 * 5325 4979 4085 * 553 * * 5237 * * 4554 * * 5262 4381 4801 5392 * * 162
+ 0 * * * * * * 6880 0 0
+
+Q 163 3545 * * 2419 * * 4847 3240 * 2710 * * * 4244 5141 4885 5197 1777 * * 163
+ 0 * * * * * * 6748 0 0
+
+L 164 * * * * 4701 * * 2954 * 766 4523 * * * * * 4548 3691 4652 4612 164
+ 0 * * * * * * 6085 0 0
+
+E 165 * * * 1639 * * * * 2569 * * 2619 2426 2630 * * * * * * 165
+ 0 * * 0 * * * 3531 0 0
+
+//
+�HHsearch 1.5
+NAME 53ff759256b5d7f5f74b908ef8b7590f
+FAM
+FILE 53ff759256b5d7f5f74b908ef8b7590f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:43:32 2013
+LENG 239 match states, 239 columns in multiple alignment
+FILT 133 out of 556 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEECCCCCCCEECCCCEEECCCCCCEECCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEHHHCCC
+CCCEEEEEEECCCCCCEEEEECCCCEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEEECCCCCCEEECCCHHHHHHHHHCCCCCCCCCEEECCCCCCC
+CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
+>ss_conf PSIPRED confidence values
+9874340258999835077720777621340316688008999999879888378999824897799980147702639997987776665461312379
+9988987874089970688707981899995499999987898748885426599878726760100502011243445411799970251841655588
+689899889971257576999864131210135778789
+>Consensus
+gkxxxxqrrgxgxxxxrxxxxxxxxxxxyrxidxxxxxxgxVxxIxyDPxRsaxIAlvxxxxgxxxYIlAxxglxxGdxIxxgxxxxixxGnxlpLxxIP
+xGtxIxNIExxpgxGgklxRaAGtxAxIixkxxxxxxvkLPSGexkxixxxcxAtIGxVsnxxxxxxxxxKAGxxrxxxxxxxxxxPxVRGvAMNpvdHP
+hGGgxxxxxgxpxxxxrxxxpgxkvgxixxrrtgxxxxx
+>53ff759256b5d7f5f74b908ef8b7590f
+GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVDAEIAPGNTLPLAEIP
+EGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVGGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHP
+FGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGGNE
+>gi|11496537|ref|NP_044547.1| ribosomal protein L2 [Toxoplasma gondii RH]gi|74824921|sp|Q9MTE5.1|RK2_TOXGO RecName: Full=50S ribosomal protein L2, apicoplastgi|5231240|gb|AAD41134.1|U87145_3 ribosomal protein L2 [Toxoplasma gondii]
+---------------------------LYKILDSNfanYGmsFSSAFYvNIIYDSFRRIFLAVYFIi--NsiiKNiyRYFLLTKNLKIGSQIN-fG-FkA
+PLKIGNALPLYKILLGSFIYNIEIRYKGKGSLVKNANHNAIILMIgD-IYVTVKLPSGEIKLLLKNLFCILGqLEIRRKVNKNIKKHAGFNRKL-----S
+IRPKIRGAAMNAVDHPHGGGEG---------------------------------
+>gi|295791976|gb|ADG28988.1| ribosomal protein L2 [Vandenboschia radicans]
+-------------------------------------NRGIITSRHRGGGHKRLYRKIDFERNKMEI--------------CGII-----GSIEYDTKVP
+LGTIIHNIEIIPGRGGRLARAAGTTAKVIAKEGQLATLRLPSGEVRSISQNCIATVGRVGNVDINNKDLGKAGSKRW-----------------------
+---------------------------------------
+>gi|149195350|ref|ZP_01872436.1| 50S ribosomal protein L2 [Caminibacter mediatlanticus TB-2]gi|149134482|gb|EDM22972.1| 50S ribosomal protein L2 [Caminibacter mediatlanticus TB-2]
+----------------------------YRIIDFKrnkFGVPGKVVTIEYDPYRNCRICLISY-------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------
+>gi|115756514|ref|XP_001202571.1| PREDICTED: similar to MGC84466 protein [Strongylocentrotus purpuratus]gi|115938363|ref|XP_789607.2| PREDICTED: similar to MGC84466 protein [Strongylocentrotus purpuratus]
+-----SGRRGGGaKRNYRMVDFKRVGPVEGPPME------EKVLAVRYDPNRTANIAIVA-GGNKKRYIIASANMEPGDIIRtsghIGRMtVVANEGDAY
+PLGALPIGSLVHCVEIYPGEGAIRVRSGGTSAQILRKVGGQVILQLPSKLQISVNERCVATVGRASGDQHNRMVIGKAGRSRWFgRRPSSGLWQRKGG--
+----------------------------------------------
+>gi|11466313|ref|NP_051141.1| ribosomal protein L2 [Cafeteria roenbergensis]gi|6180095|gb|AAF05792.1|AF193903_15 ribosomal protein L2 [Cafeteria roenbergensis]
+-------------------------------------------GVSYNPIKSGMLFQfINKESGEIFYQPATskfsllEGLNLNETSS---QD----SFR
+EPLSNFNIGEFCSHI----GSSSKinYIKASGSVGKVLQRytwIKNYMLIVLPSGEQKLFLKTQSAVKGANLGNTKLFEKLKMAGRSRWLS-----KRPS
+VRGVAMNPIDHPHGGGEGKTSgGRPS-VSK----------------------
+>gi|23464625|ref|NP_696993.1| ribosomal protein L29 [Monosiga brevicollis ATCC 50154]gi|23344087|gb|AAN28363.1| ribosomal protein L29 [Monosiga brevicollis]
+---------------------------RLRLIDRSrelgIYTKSEIIDIQYNPNISSNIALLSTLNtpSIKFYILASNTMKIGDIIEGYKyndieklnNV
+nlnnnEINNnkIESNYLYNLPIGTNIYNITSLsnknilnekslnniklntkqtylseknlknklknsyltnhlNKNNGVYSRAAGTFSILLKNiEennEL
+RSIVRLPSKKIINIPSNNIASIGKVSNELHKYEIKGKAGTNRLL-----NNRPKVRGKAQNPVDHPMGGKTSGsgGLGKPKKTAW---------------
+-------
+>gi|8928598|ref|NP_059403.1| ribosomal protein L2 [Paramecium aurelia]gi|133115|sp|P15765.1|RM02_PARTE RecName: Full=60S ribosomal protein L2, mitochondrialgi|578755|emb|CAA34047.1| unnamed protein product [Paramecium aurelia]gi|1019633|gb|AAA79258.1| ribosomal protein L2 [Paramecium aurelia]
+--------------------------------------------------KKPYVALVRDSYNSLSYYIAPAGFFVGRTLKTLPtkhdyykkggwKFYIr
+GLGTYVMLRVLRVNDVIFNLLSPSRVLYRLALAAGTYFKILYQSfcKTFYVMTIPSGLIIRVPSEGLAVMGRNSNTQNNKRVLGLAGVNFFN-----GTN
+PRVRGVAMNPVDHPNGGRTK---------------------------------
+>gi|66773824|sp|Q5DUX7.1|RL2H_NYCOV RecName: Full=60S ribosomal protein L2, hydrogenosomalgi|60416551|emb|CAI38861.1| ribosomal protein L2 [Nyctotherus ovalis]
+----------------------------------------------------------------------------------------------------
+--TLVSYVPNILNGRPLFARARGSACLVRYRNklqhLGLIWVKLPSGKYRRVSNGNSVLLGKIAPKLRSELGNTRAG--YWV---NRGIKPQVRGIVKNP
+VDHPNGGRA----------------------------------
+>gi|74002880|ref|XP_545130.2| PREDICTED: similar to Cystatin A (Stefin A) (Cystatin AS) [Canis familiaris]
+--------------------------------------------------------------GRLRTYFSELQLPQGWFLSCGKKAQLSISHVLPTGTIP
+EImrhHRVCCLEEKAATEASWPE----PPQMMSLsppttrdqgDPGEAALGLQEGHHLS-QQSC----GRCSGQKWLHLQAHPEGhCAYHKYVDKRDCWP
+RMQGVAMSPVGHPFS-------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 5046 * * * * 141 * * * * * * * * * 3998 * * * * 1
+ 0 * * * * * * 3470 0 0
+
+R 2 * * * * * * 3466 * 511 * * * * * 2545 * 4789 * * * 2
+ 48 4947 * 0 * * * 3470 1000 0
+
+R 3 * * * * * * 3938 2241 2877 * * 5111 4876 * 1269 4710 * 3819 * * 3
+ 0 * * * * * * 3542 0 0
+
+I 4 * * * * * * * 966 * 2101 * * 4833 * * * 2791 3727 * * 4
+ 143 * 3403 * * * * 3542 0 0
+
+Q 5 * * * * * * * 2227 4745 2198 * * 4369 5421 1533 3696 * 4766 * * 5
+ 0 * * * * * 0 3436 0 1136
+
+G 6 2232 * * * * 5556 * * * * * 3012 3774 3290 4524 2542 4249 2331 * * 6
+ 0 * * * * * 0 3682 0 1136
+
+Q 7 * * * * * 4487 * * * * * * * 245 3880 4524 * * * * 7
+ 0 * * * * * 0 3682 0 1136
+
+R 8 * * * * * * * * * * * 3681 * * 213 4076 * * * * 8
+ 0 * * * * * 0 3682 0 1136
+
+R 9 4281 * * * * * 5290 5079 2244 * * * * * 666 * * 4258 * * 9
+ 71 * 4386 * * * 0 3682 0 1136
+
+G 10 * * * * * 66 * * * * * * * * 4476 * * * * * 10
+ 71 * 4387 1000 1000 1594 581 3598 1046 1223
+
+R 11 4352 * * * * 2780 3952 * 1885 * * 4969 * * 1190 * * * * * 11
+ 0 * * * * 1714 525 3669 0 1213
+
+G 12 4190 * * * * 347 * 4518 4524 * * * * * * 3795 * * * * 12
+ 495 4487 2023 0 * * 0 3682 1010 1136
+
+T 13 * * * * * 1771 * * 4043 * * 4570 * * * 1253 2437 * * * 13
+ 0 * * * * 0 * 3293 0 1534
+
+S 14 * * * * 4968 3811 * 4441 5055 4153 * 4842 2003 6289 2596 2117 5731 * * 4253 14
+ 0 * * * * * * 3972 0 0
+
+T 15 * * * * 4711 * * 4686 2114 * * 3725 * 2937 3682 * 2625 2209 5083 * 15
+ 0 * * * * * * 4365 0 0
+
+F 16 * * * * 1032 * * * * 5295 * 4727 * 4711 * * 5110 * 5468 1482 16
+ 0 * * * * * * 4365 0 0
+
+R 17 * * 4615 * * 5159 3858 5414 3412 * * * * 4437 646 * 4064 * * * 17
+ 60 4615 * 1000 1000 * * 4365 1016 0
+
+A 18 1729 * * 5110 * * * * 4914 5295 5018 4635 * 3944 * 2316 5671 3883 2423 * 18
+ 0 * * * * * * 4365 0 0
+
+P 19 * * * * * 4711 3781 2860 5674 4092 * 3860 1716 5222 5468 3574 5061 2872 * * 19
+ 0 * * * * * * 4365 0 0
+
+S 20 * * 2597 * * 3988 * 5159 2845 * * 6439 4914 5547 4860 1352 3156 * * * 20
+ 167 * 3195 * * * * 4365 0 0
+
+H 21 * * * * 3172 4376 1163 * * * * 3969 * * 4430 4555 4878 4995 2794 4965 21
+ 0 * * 0 * 0 * 4203 1223 1223
+
+R 22 * * * * * 4109 3702 5671 2140 3625 3858 * * 4502 1538 * 4914 4404 * * 22
+ 0 * * * * * * 4365 0 0
+
+Y 23 4266 * * 5110 3544 * 3792 5222 3279 * * 4686 * * 1139 5457 * * * 3110 23
+ 0 * * * * * * 4365 0 0
+
+K 24 4650 * 3138 * * * * 2317 2387 4474 * * 4727 4185 3509 4807 * 2558 * 5414 24
+ 79 5061 5414 0 * * * 4365 1009 0
+
+A 25 1661 * * * * 1016 * * * * * 5200 * 5079 5238 4081 4415 * * * 25
+ 0 * * * * 0 * 4363 0 1010
+
+D 26 3186 * 4815 3774 * * * * 2859 4880 4177 * 1186 * 5848 4482 4246 * * * 26
+ 76 * 4285 * * * * 4393 0 0
+
+L 27 2319 * * * * 4893 * 3936 4064 3319 * 4706 3929 * 4923 4044 3376 2019 * * 27
+ 161 * 3240 * * * 0 4387 0 1064
+
+E 28 5792 6455 4514 4482 5414 6243 5482 4345 2539 2415 4985 3824 * 4627 2154 4418 * * * * 28
+ 35 5395 * 598 1559 1816 482 5506 1034 1327
+
+H 29 * 6478 * 6413 3465 4029 4858 4968 * 3543 * 6968 * 5016 * 6334 6868 4384 * 823 29
+ 0 * * * * * 0 5611 0 1223
+
+R 30 5498 * * * 6643 6242 * 3593 3734 5858 * * 2427 6368 960 6907 5108 5808 * 6374 30
+ 43 * 5077 1585 585 0 * 5627 1223 1223
+
+K 31 4967 * * * 6648 5596 5011 3563 3060 2957 5228 3348 3144 4373 4507 4038 3553 4513 6508 4576 31
+ 270 3373 3753 1194 829 * 0 5125 1458 1096
+
+V 32 * * 6487 * 4026 * * 1122 6384 2705 4902 * * * * 5585 5636 2521 * 4208 32
+ 104 4495 5305 1585 585 * 0 5013 1223 1473
+
+E 33 6463 * 693 3748 * 6360 * * 4719 * * 2812 * * * 3958 4686 * * * 33
+ 80 * 4219 * * 1302 750 4942 0 1797
+
+D 34 6330 * 4941 5015 1301 5448 4720 4525 5582 3777 5383 4387 5660 5102 5299 4195 * * 6805 3178 34
+ 105 4643 5051 830 1193 2948 200 4968 1071 1661
+
+G 35 3489 * 4275 3249 5170 4228 5664 * 1962 4194 * 3091 5133 6766 4337 3777 6601 7914 5724 5011 35
+ 1628 564 * 1535 611 984 1016 4980 2849 1671
+
+D 36 5484 * 3579 3081 4856 3528 5913 3752 3126 6515 5634 4305 4355 4488 3939 4175 3928 6410 * 3716 36
+ 244 3397 4037 724 1342 1919 443 5005 1416 1473
+
+V 37 5210 * 3202 4200 6295 2931 5028 * 4243 3726 * 2821 3985 5419 6714 4423 3756 3699 * 3800 37
+ 123 3811 6587 997 1003 1783 495 5535 1285 1863
+
+I 38 4724 * * 5151 4802 5595 4913 2091 4201 3649 5188 4728 7704 5077 * 3744 4056 2676 * 3563 38
+ 42 5785 6539 1049 952 1359 713 5537 1336 1691
+
+A 39 4957 * 6209 3050 4566 5602 * 3831 2627 5088 * 4414 2811 5314 3441 3428 4348 4534 6638 7074 39
+ 95 4182 6845 532 1696 189 3029 5593 1205 1440
+
+G 40 2870 5899 4775 3137 5435 1207 5755 * 4679 5703 6715 5590 * 6915 * 3400 * * * 5068 40
+ 11 7022 * 1000 1000 * 0 5690 1000 1043
+
+T 41 4852 6611 5974 4013 5900 * * 2946 2179 3701 6258 7210 * 5776 3899 5336 3209 2585 * 5141 41
+ 0 * * * * 1756 506 5690 0 1043
+
+V 42 * * * * 4142 * * 1664 * 6014 * * * * * * * 708 * * 42
+ 0 * * * * * 0 5689 0 1017
+
+V 43 5004 5082 6776 3076 7500 * 7026 2648 3253 2229 6817 7140 * 6662 7167 4628 4691 2632 * 4401 43
+ 125 3596 * 760 1288 * 0 5689 1217 1017
+
+D 44 3976 * 2720 2883 * 4619 5060 * 3759 6768 * 3977 * 4309 2351 2890 4310 * * * 44
+ 0 * * * * * 0 5707 0 1017
+
+I 45 * * * * 4820 * * 1000 5222 2287 * * * * 6464 6183 5749 2401 * * 45
+ 0 * * * * * 0 5700 0 1017
+
+E 46 * * 6675 1377 4647 5896 5449 3120 4448 3448 5031 5744 * 4149 4698 4616 * 3504 * * 46
+ 0 * * * * * 0 5700 0 1017
+
+H 47 * * 6569 5638 * * 1935 6435 4320 6678 * 5303 * 6808 4448 5566 * * * 902 47
+ 0 * * * * * 0 5700 0 1017
+
+D 48 5888 5854 473 4441 * 6464 6623 * 6041 5744 * 4185 * 6771 * 4924 4662 7073 * * 48
+ 0 * * * * * 0 5700 0 1017
+
+P 49 7236 * 6902 5566 * 4450 * * * * * 5744 481 6414 4517 3970 5101 * 5764 5946 49
+ 0 * * * * * 0 5700 0 1017
+
+A 50 4014 4248 * * 4509 2120 * 4312 5251 * * 1290 * * * 5041 5765 6435 5764 4403 50
+ 0 * * * * * 0 5700 0 1017
+
+R 51 * * * * * * 4426 6332 3795 5151 * 4693 * 6392 353 * * 7086 * * 51
+ 0 * * * * * 0 5759 0 1017
+
+S 52 * * 6711 6829 * 3628 4120 6056 4611 * 6448 3055 6984 * 5844 1428 2106 7245 6275 7183 52
+ 0 * * * * * 0 5759 0 1017
+
+A 53 806 3805 * * * 3746 * 5844 * * 5608 * 4787 * 5465 3252 4156 5367 * * 53
+ 0 * * * * * 0 5759 0 1017
+
+P 54 * * * 6925 2664 * 3335 6611 4472 4407 5776 3247 2004 * 3408 6914 * * 6956 2747 54
+ 0 * * * * * 0 5759 0 1017
+
+V 55 5744 * * * * * * 930 * 1933 * * * * 5608 * 5526 2824 * 6482 55
+ 0 * * * * * 0 5759 0 1017
+
+A 56 625 4597 * * 5776 3851 * 5315 6056 5919 4716 4970 * * 6482 4006 * 5478 * * 56
+ 34 5441 * 0 * * 0 5759 1029 1017
+
+A 57 7642 5018 * 5370 * * 6165 3240 3243 1004 * * 6129 5247 4004 5622 5024 4011 * * 57
+ 27 5776 * 0 * * 0 5759 1017 1017
+
+V 58 5298 5625 * * 5447 * * 1958 5608 2885 7307 6338 * * * * 7129 1121 * 4942 58
+ 96 4983 4945 1409 681 * 0 5759 1101 1017
+
+E 59 2962 5151 4406 4486 4651 5723 3832 4664 2453 3907 6963 5053 * 6120 3166 5004 * 3902 6525 4028 59
+ 219 4699 3287 598 1560 1089 916 5709 1087 1125
+
+F 60 6640 * 4569 7171 2302 4112 4634 4128 4803 3692 6755 3981 * * * 4148 6164 6129 5882 1759 60
+ 207 3416 4654 3040 187 844 1175 5658 1296 1592
+
+E 61 * 6376 3825 2142 * 3297 6799 4541 3660 4049 * 4003 4598 5494 4044 3098 4388 5243 * 5636 61
+ 48 6882 5371 0 * 1948 433 5517 1046 1532
+
+D 62 * * 1910 5313 * 3537 4968 5028 5672 * * 2019 4123 4741 6350 3467 5146 4809 * 4956 62
+ 142 4394 4442 357 2189 1200 824 5537 1131 1469
+
+G 63 6394 * 6156 5179 6578 898 7154 * 4114 5443 * 2948 5292 6364 5398 4783 3691 7150 * * 63
+ 343 2298 6944 2294 329 1138 874 5796 2074 1439
+
+D 64 4729 * 4442 2580 5269 4627 4749 3763 2582 3858 * 4880 * 3802 4510 3290 5387 4347 * 6503 64
+ 0 * * * * * 0 5812 0 1335
+
+R 65 6768 * 7203 3958 4328 5119 5884 4629 2257 2647 4390 4252 4938 5343 4196 4822 4348 4863 * 3572 65
+ 201 2943 * 1084 921 2296 328 5812 1409 1335
+
+R 66 4686 6620 * 4422 3074 4999 6226 7249 3240 6001 6189 4920 * 6951 1885 2220 4244 6333 * 7064 66
+ 0 * * * * 169 3176 5810 0 1283
+
+L 67 * * * 6863 4099 * 6023 5388 * 3445 6794 5187 * * * 6103 4666 * 3793 645 67
+ 16 * 6525 * * 0 * 5836 0 1000
+
+I 68 7211 * 6416 * 4334 * 6774 829 * 3904 4442 * * 5312 6900 * 6507 2843 * 3984 68
+ 0 * * * * * 0 5831 0 1003
+
+L 69 6292 6054 * * 5407 * * 1535 5835 1212 7191 * 3136 * * * * 4893 * * 69
+ 0 * * * * * 0 5857 0 1003
+
+A 70 628 4608 * 7577 * * 5021 5428 4365 3773 * * 5679 5258 6968 4203 6496 * * 6379 70
+ 0 * * * * * 0 5857 0 1003
+
+P 71 4536 5262 7052 5407 4894 * 7588 * * 7191 7564 6224 1309 5056 * 3931 1915 3815 * * 71
+ 26 5813 * 2585 263 * 0 5857 1017 1003
+
+E 72 3531 * 3827 1592 * * 4129 7489 3015 4258 * 3523 * 4219 6236 4172 5102 5817 * 5933 72
+ 0 * * * * * 0 5857 0 1003
+
+G 73 * * 5237 5061 * 1000 * * 3187 6702 * 2240 * 5407 6018 7633 3873 * * * 73
+ 0 * * * * * 0 5857 0 1003
+
+V 74 3799 6460 * * 4708 * 6496 3344 4765 1667 2128 * * * * 5039 3906 3721 * 6005 74
+ 0 * * * * * 0 5857 0 1003
+
+G 75 4537 * 6968 5381 3601 5400 4814 * 1591 5335 5398 4566 5407 4310 3749 3605 5294 7272 * 3347 75
+ 0 * * * * * 0 5857 0 1003
+
+V 76 3386 * * 4340 * 6930 * 2167 4259 4130 * * 3255 4477 * 7207 3760 1875 * 6401 76
+ 0 * * * * * 0 5857 0 1003
+
+G 77 * * 7224 * * 129 * * * * * 3670 * * * * * * * * 77
+ 0 * * * * * 0 5857 0 1003
+
+D 78 * * 1071 4825 * * * 6178 4843 * 5990 3369 * 2490 5625 3671 5842 * 5407 6663 78
+ 51 * 4837 * * * 0 5857 0 1003
+
+E 79 7252 7036 * 3575 3783 * * 2223 3506 3931 6524 5066 6957 4914 5678 4555 3152 2614 6844 4925 79
+ 0 * * 0 * 229 2770 5832 1223 1268
+
+L 80 8454 * * * 5433 * * 925 * 2841 7260 * * * * 5813 5835 2064 * 5230 80
+ 0 * * * * * 0 5857 0 1003
+
+Q 81 4698 * * 2972 4350 6881 7194 3546 2861 4839 4983 4553 * 3688 3913 3760 4069 4319 * 3188 81
+ 143 7121 3517 2000 415 0 * 5857 1010 1003
+
+V 82 3195 3455 6149 * 4735 6285 * 2969 * * * 3425 6491 * 6271 1811 2838 6015 6162 4797 82
+ 205 3063 6287 1702 530 807 1223 5619 1582 1249
+
+G 83 * 6642 4292 * 5421 893 5329 5150 6932 5008 6961 5501 6608 6800 6822 2829 4311 * * 4810 83
+ 270 3204 4009 3344 150 2274 334 5767 1391 1117
+
+V 84 4212 6302 3632 2995 5506 5233 * 3608 2654 5549 5685 4158 2933 * 4382 3581 5875 4277 * 6669 84
+ 459 1953 6152 2393 305 135 3486 5605 1862 1278
+
+D 85 6003 * 3057 2866 5332 3797 4472 6537 2679 6411 7172 2011 5945 4103 * 5195 5255 5404 * * 85
+ 391 2174 5990 1621 567 * 0 5804 1818 1046
+
+A 86 1532 6406 4446 4833 4450 5369 5861 3439 6176 4970 * 4650 4481 5344 5957 4236 4807 3032 * * 86
+ 65 5220 5838 3288 156 1702 530 5836 1081 1110
+
+E 87 4281 * 3766 2681 * 5895 * 5365 4319 4332 6043 3503 2808 4465 4341 3365 3554 5260 * 5096 87
+ 12 6900 * 0 * * 0 5781 1000 1123
+
+I 88 3997 * * * 3802 * * 1706 5663 2313 5964 5097 3451 7020 5703 5208 4456 3438 * 6692 88
+ 88 4339 6660 0 * * 0 5781 1122 1123
+
+A 89 3574 * 6018 3911 * 5795 4603 5582 1650 7251 6701 3734 * 4170 3977 3673 3599 4693 7271 5717 89
+ 48 * 4946 2322 322 1781 496 5776 1017 1164
+
+P 90 5534 * 5229 3111 4966 * * 2692 5999 3745 * 3240 2509 * 5099 5634 3822 2737 * 7061 90
+ 62 4577 * 633 1493 0 * 5759 1198 1231
+
+G 91 * * * * * 146 * 6453 * * 6760 5767 * * 6521 4432 * * * * 91
+ 0 * * * * * * 5861 0 0
+
+N 92 * 5612 2424 6453 4803 6637 3778 6563 * * * 1044 6760 5601 7147 3487 4908 * * 6954 92
+ 0 * * * * * * 5861 0 0
+
+T 93 2442 4029 * 6816 5198 * 6937 2784 * 5752 6445 * * * 4485 2366 3725 2524 6781 4715 93
+ 0 * * * * * * 5893 0 0
+
+L 94 7001 * 6429 5238 6047 * 5687 4034 6013 1216 4056 4721 6422 5607 * 4969 3740 4027 5825 3374 94
+ 0 * * * * * * 5895 0 0
+
+P 95 5963 6157 * 6383 5260 6578 7075 5534 4333 4610 5251 5629 792 4743 5944 5008 5422 6149 * 4160 95
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+//
+�HHsearch 1.5
+NAME 55e5f4d58d11858b673e58b73804fab3
+FAM
+FILE 55e5f4d58d11858b673e58b73804fab3
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:19:11 2013
+LENG 155 match states, 155 columns in multiple alignment
+FILT 124 out of 1153 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEECCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCC
+CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCHHCCCCCC
+>ss_conf PSIPRED confidence values
+9621207998741312798766628899999836888677886789999999998749863888888889986420444045589999999998488888
+8765568999999999999997267888763536988705568998011145569
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGxxlyxxxCxxCHgxxgxgxxgPxLxxxxxxxxxxxxxxxlxxxixxgxxxx
+MpxxxxxlsdeeixxlxxYlxslxxxxxxxxxxxxxxxxxxxxpxxxxxxxxxxx
+>55e5f4d58d11858b673e58b73804fab3
+APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQ
+MGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQPKSSGEDQS
+>gi|148555142|ref|YP_001262724.1| pyrrolo-quinoline quinone [Sphingomonas wittichii RW1]gi|148500332|gb|ABQ68586.1| Pyrrolo-quinoline quinone [Sphingomonas wittichii RW1]
+-------NSERLIVFRIGGpA-PRLPP-LREARPftVAPAQYRGTQAQEQHGAALYGENCGRCHGGPTGAGGYPNLW---KM--TPETHAAFESIVLDGA
+faYAGMASFADVLSKQDARDIHAFLAKP--------------------------------
+>gi|159043030|ref|YP_001531824.1| cytochrome c class I [Dinoroseobacter shibae DFL 12]gi|157910790|gb|ABV92223.1| cytochrome c class I [Dinoroseobacter shibae DFL 12]
+-------------------------------------------GditvDAAAGEKVFR-TGKAYHQVSVdaESRASPRLNGavdravgsiEGFSYSDAFv
+vlnaegtirSTEKFAAFLAKPKnfeKGTMIAFAGLRKKEDRKNMIAYLATCWV------------------------------
+>gi|209486095|gb|ACI48510.1| nitrite reductase [uncultured bacterium]
+---------------------------------------------------------------LRKGATGKPLTPDITLGKG---TDYLKVFISYGSPGG
+MPNWPtsGEMSEKLVDVMARYVQQDPPQP---PEWGMEQMKQTWK------------
+>gi|255034827|ref|YP_003085448.1| heme-binding protein [Dyadobacter fermentans DSM 18053]gi|254947583|gb|ACT92283.1| heme-binding protein [Dyadobacter fermentans DSM 18053]
+-----------------------KGP-GRAWKVEQAVELVEDSLAnrdFERGKQIFSAvLCSRCHAIQGEGAdVGPELTQ----LGTRFSVKDMLEAIII
+PdkavsdqyasisfqmkdgqsivgRevnqdanfyyvsqnpfdpktirkvakkdvassrlspVSIMLPGlINGLNPNELRDLVAYLM--AGGNKN------
+--------------------
+>gi|162448635|ref|YP_001611002.1| cytochrome b6 [Sorangium cellulosum 'So ce 56']gi|161159217|emb|CAN90522.1| cytochrome b6 [Sorangium cellulosum 'So ce 56']
+-----------------------RTARAVALFKQGVPPegalamLRNDP--ETRGEDLYKKECASCHRLNDLGPpkdkQtAPDLTgfgTKAWALEVLRDP
+--DADHLFGKtafkemmpSAVKPPADPeAAkv-FTPMSEADQETIAA---------------------------------
+>gi|320332835|ref|YP_004169546.1| class I cytochrome c [Deinococcus maricopensis DSM 21211]gi|319754124|gb|ADV65881.1| cytochrome c class I [Deinococcus maricopensis DSM 21211]
+-VVFRNGVRPSDVMAPIarRLSDQDVADLAAYYARQPLGPaWPTNAADRERGRALFtrgdpnrnLMACAVCHGADGRGTEGgvASIARLPAAYAQ--KAM
+GVFRDLP--GFGGIPHAEamrialHPLTDTELQQLAAYVSSM--------------------------------
+>gi|94495110|ref|ZP_01301691.1| Cytochrome c, class I [Sphingomonas sp. SKA58]gi|94425376|gb|EAT10396.1| Cytochrome c, class I [Sphingomonas sp. SKA58]
+----------------SSLSDAEMQRLANHFSALP--GL--KPTILLSDLPMLkdQAGipvpaCVNCHAP---GKAGPILAGQRSSYVA--ARLKGWQQE
+KAVVDArqspeTMAMIARRIPLSDVDSLAAAIGQS--------------------------------
+>gi|313681723|ref|YP_004059461.1| sulfite dehydrogenase (cytochrome) subunit sorb [Sulfuricurvum kujiense DSM 16994]gi|313154583|gb|ADR33261.1| sulfite dehydrogenase (cytochrome) subunit SorB [Sulfuricurvum kujiense DSM 16994]
+-------------------------------------PYVDYPIEAGDHDEVAQQYCLICHSFGYVLNQGKK-SRPYWT-----GT----------VQKM
+VNEFKAPIPKEDQQTIINYLVKHYGYE----------------------------
+>gi|291280072|ref|YP_003496907.1| cytochrome c family protein [Deferribacter desulfuricans SSM1]gi|290754774|dbj|BAI81151.1| cytochrome c family protein [Deferribacter desulfuricans SSM1]
+------------------------------LIMIFSAVSYSK-kYPADYGRNTWKKNCRlAC-HDGSKTGvpkLAPNSkTQQQW--------ENVFA-qn
+rkyIYEMHKGVD---fSH--lSEKDWNMIKLFVIQHAYDSDQPES-----------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 0 * * * * * * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+P 2 * * * * * * * * * * * * 953 * * * * 1048 * * 2
+ 0 * * * * * * 1744 0 0
+
+Q 3 * * * * * * * * * * * * * 1980 * 2082 1953 1988 * * 3
+ 0 * * * * * * 2812 0 0
+
+F 4 * * * * 610 * * * * 1536 * * * * * * * * * * 4
+ 0 * * * * * * 3625 0 0
+
+F 5 * * * 2641 2549 * * * * * * 2473 * * 1626 * 2603 * * * 5
+ 0 * * * * * * 3625 0 0
+
+N 6 2914 * * * * * * * * * * 1751 * 2685 2842 * 2916 * 2810 * 6
+ 0 * * * * * * 3905 0 0
+
+I 7 * * * * * 2739 * 1723 * * * * 2914 2916 * 2842 2810 * * * 7
+ 0 * * * * * * 3905 0 0
+
+I 8 * * * 3409 * * * 3265 * 2376 * 3351 3107 2369 * 3446 * 3189 * * 8
+ 0 * * * * * * 4704 0 0
+
+D 9 3546 * 2599 * * * * * 3655 * * 3556 3708 3675 3409 2484 2669 * * * 9
+ 0 * * * * * * 5075 0 0
+
+G 10 * * * 3601 * 588 * * * * * * 2533 * 3655 * * * * * 10
+ 0 * * * * * * 5075 0 0
+
+S 11 * * * 2708 * * * * * 3669 * * * * 2665 905 3708 * * * 11
+ 0 * * * * * * 5075 0 0
+
+P 12 * * 3409 3675 * 3556 * * 3315 2707 * * 2599 * * * * 1626 * * 12
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+
+L 13 3741 * * * * * * * * 1019 3315 * * * * * * 2502 * 2691 13
+ 0 * * * * * * 5075 0 0
+
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+
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+
+D 16 2151 * 3792 * * 3765 * * 2204 * * * 3796 * 3918 2846 * 2891 * * 16
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+
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+ 693 2872 2030 581 1593 * 0 5815 1336 1043
+
+A 18 3578 * * * * 1629 * * 3543 * * * 3358 * 2699 2562 * 3535 * * 18
+ 0 * * * * 2100 383 5123 0 1731
+
+M 19 3774 * * 2702 * 2856 * 3924 * 2187 2906 * * 3753 * * 3793 3838 * * 19
+ 0 * * * * 788 1248 5475 0 1545
+
+E 20 * * * 3088 4034 4055 * * 2995 * * * 1643 * 3974 3047 2934 * * * 20
+ 402 * 2038 * * * 0 5834 0 1180
+
+E 21 2939 * 2397 1851 * * * * 3817 * * * 3104 3742 * * * 2832 * * 21
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+
+G 22 1816 * 3953 2939 * 2842 * * 4645 4851 4650 * 4868 3093 * 4683 4726 4677 * * 22
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+
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+
+D 24 4349 * 3416 4333 4298 * 5182 3822 * 3006 3722 * * 3259 5112 5074 4341 3278 5225 3107 24
+ 0 * * * * * * 7795 0 0
+
+T 25 2611 * 5376 4049 5484 3199 * 4540 3504 5676 5507 4837 3329 4617 4113 4287 2611 * * * 25
+ 0 * * * * * * 8063 0 0
+
+E 26 2805 * 3037 3419 5556 4682 * * 3429 3810 * * 1764 4643 4045 * * 5492 * * 26
+ 54 * 4763 * * * * 8124 0 0
+
+A 27 1864 * 4548 3549 4553 5424 * 4767 * 2453 5427 * * 5644 3881 4652 3577 4086 * 5782 27
+ 0 * * * * 1227 804 8180 0 1212
+
+V 28 1437 * * 5531 3049 4639 * 3507 5665 5835 * * 4039 * * 4645 * 2610 * 4098 28
+ 0 * * * * 0 * 8203 0 1082
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+K 29 1980 * 4178 2969 * 5899 5698 3750 3173 * 5789 5573 3755 5875 3410 5997 * 3961 5637 5791 29
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+
+H 30 2677 * 4934 4100 4551 6080 4121 5574 4289 5789 * 5542 4654 2751 3762 3742 * 3646 * 3191 30
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+F 31 4369 4768 4903 5717 2342 * 4511 5027 * 2704 * 5820 * 5959 * 4888 5651 3901 3407 2407 31
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+
+L 32 1688 * 6101 4758 5037 5994 * 5733 5975 2258 5827 * 4251 4356 5622 3907 3957 4513 * 4878 32
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+
+E 33 2173 * 4379 3322 5891 4410 * * 3268 * 4469 5782 3889 3110 5942 3362 3528 * * 5997 33
+ 143 3402 * 753 1298 * * 8420 1603 0
+
+T 34 3318 * 5928 5285 * 3770 5921 * 4316 2979 3086 6189 4574 2580 4594 4100 2898 * * 5952 34
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+
+G 35 3862 * 5139 3317 5507 3166 * 5992 4230 3116 4622 4558 2127 4122 5153 4585 5906 5112 * * 35
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+
+E 36 3266 * 4187 3294 4401 4101 6119 3274 4986 3019 * * 4068 5159 4116 3836 3806 4467 6311 5940 36
+ 115 6225 3984 3310 153 1933 438 8541 1178 1172
+
+N 37 2744 5898 3509 3555 * 4374 * 4869 5836 4568 * 2779 3117 4132 * 3884 4558 3753 5924 * 37
+ 91 4036 * 1995 417 594 1567 8427 1433 1439
+
+V 38 2737 * 4939 4323 * 3185 6272 5362 4755 5280 6471 6394 1386 5427 5358 5345 4610 6024 6356 6512 38
+ 63 4543 * 1542 607 857 1159 8680 1379 1089
+
+Y 39 3821 6402 4968 5402 3201 6262 6156 5408 5299 3161 4627 4834 5142 5502 4825 4043 6345 3250 4129 2567 39
+ 166 3743 4869 1624 566 0 * 8876 1402 1000
+
+N 40 2119 * 5578 6177 6532 3780 * 5866 4239 4003 6514 5276 3050 * 3294 3058 3923 4057 * 6220 40
+ 120 3874 6465 2485 284 2314 324 8861 1520 1298
+
+E 41 2283 * 3024 4124 5417 3441 6092 6369 4515 4733 * 4205 3900 5376 4733 3866 4369 3884 * 5442 41
+ 49 5491 6470 0 * 1827 478 8893 1197 1283
+
+D 42 2975 * 2071 4406 4688 5091 * 6236 4454 5442 * 4007 3688 4871 4417 3324 3605 5432 * 6420 42
+ 62 4567 * 470 1847 1242 793 8941 1267 1265
+
+P 43 1967 6183 4130 3161 * 4703 6622 6761 3661 5411 * 4928 2410 4817 * 4646 3795 4933 * * 43
+ 84 6441 4464 2000 415 * 0 9047 1000 1115
+
+E 44 2531 * 3559 2894 5503 3679 * 5006 4697 3563 6112 4657 3938 4999 * 3545 4304 4197 * 6412 44
+ 109 4030 6471 961 1040 826 1197 8984 1534 1458
+
+I 45 2381 * 3827 4282 6436 4853 6288 4837 5061 3543 6549 2898 4466 4357 4721 3382 4526 4351 * 6463 45
+ 214 2988 6384 1500 629 0 * 9102 1884 1220
+
+L 46 2600 * 6703 4666 5409 6310 6596 3173 4993 2684 5044 6068 3044 5293 5188 4793 6743 2739 6841 5771 46
+ 13 * 6789 0 * 836 1185 9182 1007 1086
+
+P 47 2077 * 4435 2581 7041 4866 6863 7020 3182 4721 5893 4963 5052 4597 3252 5203 4381 4541 * * 47
+ 35 5381 * 1153 862 * 0 9221 1091 1067
+
+E 48 2799 * 3807 4164 6634 5289 5795 5200 2891 4555 5589 4582 4918 3695 2608 3630 * 4769 5910 * 48
+ 27 7082 6484 1425 672 0 * 9235 1047 1067
+
+A 49 3292 * 6419 * * 442 6976 6580 6859 * * 5712 4772 5923 5953 * 5962 5744 * * 49
+ 13 * 6758 0 * 0 * 9251 1007 1007
+
+E 50 3241 * 4595 2477 5229 4693 5035 * 2887 6482 6932 6552 5157 3750 2490 3928 5182 6904 6483 5720 50
+ 15 * 6608 * * * 0 9323 0 1043
+
+E 51 2399 * 4017 3192 5815 4223 4662 4740 3536 5192 6671 5981 4788 3331 3346 5608 4418 5887 7031 5260 51
+ 0 * * * * * 0 9287 0 1143
+
+L 52 3629 * 5827 6998 5310 7027 * 2702 6543 1200 5192 4981 * 6693 6906 6984 5754 2900 * 5401 52
+ 38 * 5280 * * * 0 9298 0 1143
+
+Y 53 3867 * * * 1644 * * 5279 * 4335 5590 * * 6784 * * 6391 3342 5254 1436 53
+ 90 4271 6801 2105 382 1671 544 9208 1637 1345
+
+A 54 2645 * 4535 3194 * 6627 6942 4098 3219 4078 4885 3455 * 3119 3752 4591 5011 4421 6519 * 54
+ 66 5952 5122 2323 322 659 1448 9232 1139 1276
+
+G 55 2672 * 4386 3863 * 4397 6642 6664 3312 5915 5473 4343 * 2728 3073 3751 3855 5056 6799 5801 55
+ 224 2799 * 1470 646 921 1084 9273 2131 1364
+
+M 56 4352 * 5259 4445 7075 3624 3637 * 3824 4436 5403 2120 7166 3266 4918 4056 4314 5967 6457 4112 56
+ 133 3506 * 1594 580 677 1417 9315 1800 1124
+
+C 57 * 0 * * * * * * * * * * * * * * * * * * 57
+ 0 * * * * * 0 9322 0 1000
+
+S 58 1867 * * 6605 5372 3293 6560 4308 4976 4471 4948 5329 6063 4038 5099 3405 4131 3260 * 4911 58
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+
+G 59 2301 * * 6486 5963 2582 5901 4597 5741 5003 4877 4482 4726 6028 4754 2664 3873 3965 6447 5356 59
+ 13 * 6851 2322 322 0 * 9322 1000 1000
+
+C 60 * 0 * * * * * * * * * * * * * * * * * * 60
+ 0 * * 0 * 0 * 9326 1000 1000
+
+H 61 * * * * * * 0 * * * * * * * * * * * * * 61
+ 14 * 6741 * * * * 9342 0 0
+
+G 62 2864 * * 5810 6733 1365 6634 5069 * 4353 6807 5228 * 5380 4633 2650 3690 5523 * * 62
+ 42 5771 6634 977 1023 * 0 9325 1053 1000
+
+H 63 3139 * 4328 3911 4187 4110 5467 4209 4215 3871 * 4239 2796 5341 5745 5010 4385 2969 * 6436 63
+ 150 7295 3432 3907 100 778 1263 9316 1029 1081
+
+Y 64 4235 * 2244 4764 5153 2543 6988 * 4396 6013 6624 3312 4406 4085 5365 3881 3948 5903 * 4726 64
+ 41 6483 5892 1000 1000 2348 316 9180 1000 1809
+
+A 65 3100 * 3575 5674 6639 1166 * 5735 5818 3606 5175 5227 4570 6748 4768 5944 * 6671 * 4752 65
+ 51 5310 6698 2475 286 3107 178 9200 1211 1747
+
+E 66 3968 * 3551 3010 6898 5383 5172 4544 2684 5153 5904 4607 4500 4750 3798 3729 5370 3322 * 5092 66
+ 170 4354 3999 1381 699 249 2658 9232 1589 1713
+
+G 67 3907 * 4587 5355 6569 915 6756 5761 4132 5625 * 4953 5404 6661 5574 4161 4256 5247 * * 67
+ 11 * 7096 * * 942 1060 9229 0 1892
+
+K 68 3400 * 4203 6110 6747 2858 6944 4762 3520 4948 5268 3181 3760 4338 4317 4031 4681 3121 * * 68
+ 431 1999 6949 2714 239 1805 487 9310 3027 1484
+
+I 69 3154 * 4682 5346 4734 4933 5944 2766 4581 3066 4866 5640 4239 4654 5335 4210 3770 3277 * 5211 69
+ 582 1590 * 2261 338 2373 310 9302 3809 1509
+
+G 70 2193 * * 4873 6681 1309 6105 7093 5738 6142 5761 4603 5285 * 5333 4058 3925 6577 * 4932 70
+ 699 1381 * 829 1194 1522 618 9263 4408 1537
+
+P 71 3620 * 6615 * * 5225 6079 6549 4270 5736 5975 * 651 * 4676 4914 5242 5275 * 6919 71
+ 25 5886 * 1867 462 0 * 9289 1048 1322
+
+G 72 3382 * 3359 5188 6584 4406 * 5213 4132 5841 5514 2368 3168 4616 4215 3312 4004 5316 * 6558 72
+ 37 * 5289 * * * * 9303 0 0
+
+L 73 4951 * * * 3098 6676 6574 3033 * 854 5975 6039 6023 * * 6992 5451 4923 5996 5093 73
+ 202 4947 3348 504 1763 0 * 9207 1208 1146
+
+N 74 2262 * 5216 4420 5629 3510 6614 5238 3534 4890 * 4551 5753 * 3947 3332 2523 5068 * 5383 74
+ 330 3045 3586 3551 129 2703 241 9231 1898 2134
+
+D 75 5942 * 2354 5716 6753 2113 * 5214 3351 5582 5187 4150 5309 3811 3469 3905 4457 * * * 75
+ 285 3204 3825 1896 452 2362 312 9228 1827 2856
+
+A 76 2869 * 3229 5121 * 2732 4566 3994 6255 4154 * 4532 3959 2868 3801 4801 5347 5252 * * 76
+ 141 4554 4298 1498 631 2783 226 9177 1223 3084
+
+Y 77 3252 * 3523 3541 4941 3891 4356 3799 5583 3763 5627 6529 3949 4186 4139 4256 4319 5647 6281 3960 77
+ 95 5415 4636 3941 97 1156 859 9106 1061 3170
+
+W 78 3663 6805 6483 4723 4462 4860 4308 5071 4827 4237 4345 6373 5604 4961 4486 4306 4199 6030 1881 3957 78
+ 105 6522 4074 1000 1000 2235 344 9180 1000 2496
+
+T 79 4727 * 5121 3962 6590 4173 * 3320 3425 2906 4899 4981 3972 4122 3352 4024 4139 4221 * 5594 79
+ 172 5155 3566 356 2192 2656 249 9089 1333 2699
+
+Y 80 4787 * * 4629 3758 4992 4993 6395 3601 4272 5387 4487 6518 5510 4306 4592 4468 3703 4344 1857 80
+ 174 5022 3598 2820 220 3177 169 8987 1151 3197
+
+P 81 2855 * 4160 4334 4760 2476 6404 4960 5003 3547 * 4172 3228 6532 3954 4063 4514 4724 * * 81
+ 242 3529 3886 3511 132 1431 668 8943 1455 3470
+
+G 82 3094 * 3636 5248 5376 1950 * 4673 4180 3934 6440 5476 4240 3911 5047 3772 4500 5497 6590 * 82
+ 551 5029 1802 1767 502 2780 227 8920 1166 2953
+
+N 83 4430 * 2992 3783 * 3952 5997 6528 4274 3672 5096 5101 5108 4319 2774 3788 3154 4672 * 5249 83
+ 195 4010 3952 4309 75 3660 119 8601 1235 4454
+
+E 84 4636 * 4468 3605 5917 * 3898 4599 3156 3251 5036 4746 3614 6166 3478 4535 4955 5299 4272 3561 84
+ 77 4593 6538 1626 565 506 1756 8612 1127 4523
+
+T 85 3345 * 2886 4733 * 3863 6723 6611 3354 * 6576 3541 3618 5683 6382 2728 2782 5762 * 5768 85
+ 79 4553 6508 2580 264 2205 353 9196 1194 2293
+
+D 86 3059 * 2734 3360 6905 5712 6704 4431 3690 4249 5824 5101 3006 4008 3805 4307 4833 6921 * 5636 86
+ 125 5929 3914 2561 268 219 2828 9165 1134 2076
+
+V 87 2447 * 2745 3053 4865 3963 6749 5683 3737 3804 6949 4240 5773 4732 4428 4795 5732 4394 7070 * 87
+ 52 5714 5926 1903 449 * 0 9078 1069 1626
+
+G 88 2880 * 3568 3124 6137 3774 4875 * 3609 6766 6679 4084 * 4866 3448 5413 3986 5482 5813 2930 88
+ 26 5830 * 820 1206 779 1261 9066 1133 1834
+
+L 89 4977 * 5594 6625 4138 6450 5800 2598 5752 1328 3966 5641 * 6887 * * 4541 3317 * 4902 89
+ 10 7156 * 1585 585 * 0 9187 1000 1305
+
+F 90 3347 6541 5360 4122 2706 6448 4685 3563 4155 3639 4633 7055 * 4598 4097 4777 4291 3964 5618 3942 90
+ 0 * * * * * 0 9187 0 1305
+
+S 91 2848 * 4224 3227 * 6685 4451 6625 3408 4363 6662 4161 5249 3676 2969 3973 3980 5850 4974 5773 91
+ 23 6820 7173 1585 585 * 0 9187 1000 1305
+
+T 92 3232 * 5925 5713 3111 5797 5907 4033 4229 5252 6021 5352 6932 3863 4036 3183 3723 3097 4092 5170 92
+ 14 * 6691 * * * 0 9191 0 1384
+
+L 93 4353 * 5866 5644 4087 5145 6436 1845 5819 2019 4357 * 6666 * 6855 7036 4806 2880 * 5264 93
+ 82 4627 6057 1654 552 1860 465 9179 1279 1452
+
+Y 94 3908 6751 6964 5177 5667 5858 6608 4933 2665 3931 5590 4959 5879 4435 2787 3599 3454 3257 5755 5189 94
+ 173 4180 4107 3604 124 * 0 9187 1533 1513
+
+G 95 3889 * 3167 3199 6825 3323 4112 4958 3950 6630 * 2451 5870 3912 3807 4058 6823 * * 4967 95
+ 68 4756 6746 1088 917 2440 294 9155 1551 2217
+
+G 96 4910 * 6827 4952 5607 979 5137 * 4151 5687 * 4675 3214 * 4721 4938 6023 5109 * 4974 96
+ 373 2562 4100 1420 675 405 2031 9155 2836 2063
+
+A 97 3436 * 5129 4897 * 3513 5154 3562 4438 4447 5759 4301 4540 4093 2430 4301 5393 3445 * 5038 97
+ 680 1611 4360 2295 329 0 * 9222 3877 1659
+
+T 98 4025 6577 3372 3670 3900 4296 3734 4616 3545 5832 6828 4114 3467 4587 4534 3570 4557 5104 * 5764 98
+ 48 5375 6805 2584 263 397 2056 9210 1298 1578
+
+G 99 2897 * 4308 6018 6440 1663 5192 6743 3944 * 5680 4454 3582 4579 5071 4855 3782 6588 6670 5424 99
+ 323 2369 7143 1761 504 616 1525 9260 2740 1195
+
+Q 100 3130 6005 4962 4111 5010 3791 7408 4088 3875 3499 4128 4913 3426 4626 6010 5284 3989 3666 6669 4684 100
+ 13 6839 * 2583 263 0 * 9266 1074 1076
+
+M 101 5532 * * 6808 5289 * * 4485 6799 6609 394 7232 * * 5717 5823 5249 4343 * * 101
+ 122 6976 3771 0 * * * 9303 1000 0
+
+G 102 3234 * * 6318 * 4604 5000 4964 5098 6541 5340 6029 1090 4505 5189 5337 3860 4545 6671 6738 102
+ 147 3844 5205 1364 710 654 1456 9225 1673 1549
+
+P 103 2380 * 7133 4154 5760 2792 6115 6825 6884 5234 4443 7190 2535 5343 4962 2681 5055 4412 6893 * 103
+ 76 4543 6851 1284 762 926 1078 9227 1409 1474
+
+M 104 4184 * 6681 * 1939 6276 4307 3917 4398 3593 4546 5398 * 4396 * 4717 6929 4104 3106 3646 104
+ 198 6628 3080 4000 93 807 1223 9289 1000 1240
+
+W 105 2428 * 4333 3924 4881 3392 * 6498 2750 3731 5277 4698 4840 7178 4703 4025 4534 4395 6509 5223 105
+ 270 2824 5078 1188 834 1601 577 9097 2481 2019
+
+G 106 3543 * 3176 3839 5759 2757 4580 6897 3447 5511 * 5337 4064 3646 4103 3506 3771 * * 5675 106
+ 343 5083 2456 657 1452 503 1763 9147 1185 1862
+
+S 107 4040 * 3783 4416 * 4775 5069 4649 3686 3906 5580 5056 3750 4103 3201 3385 3482 3448 * * 107
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+
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+
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+K 139 4503 * * 4317 * 4081 4013 * 1286 3193 * * 4226 4300 4321 * * 3170 * * 139
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+A 140 3136 * 4503 3165 * * 4300 * 2097 4317 * * 4120 4251 3111 3208 * * 4013 * 140
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+S 149 * * * * * * * * * * * * * 1839 * 473 * * * * 149
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+D 153 * * 0 * * * * * * * * * * * * * * * * * 153
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+S 155 * * * * * * * * * * * * * * * 0 * * * * 155
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 564c9b9e5d4cd66b1fd7f125a716af4e
+FAM
+FILE 564c9b9e5d4cd66b1fd7f125a716af4e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:34:38 2013
+LENG 113 match states, 113 columns in multiple alignment
+FILT 158 out of 1138 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCHHCCEEEEEEECCCCC
+CEECCCEEEEECC
+>ss_conf PSIPRED confidence values
+9789980986999689989999998588656667855999998999996899996465487758848998415489999987783009799999925998
+8899999999719
+>Consensus
+xxxvxqxpxxvxxxxGxxvxLxCxxxxxxxxxxxxxxvxWyrxxxxxxxxxlxxxxxxxxxxxxxrxxxxxxxxxxxLxixxxxxxDsgxYxCxxxxxxx
+xxxgxgtxlxvxx
+>564c9b9e5d4cd66b1fd7f125a716af4e
+DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLNWYLQKAGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVP
+PTFGGGTKLEIKR
+>gi|3002929|gb|AAC08955.1| T cell receptor beta chain [Homo sapiens]
+-AQVTQNPRYLITVTDKGdvpegYKVSRKE--KR----NFPLIL---ESPSPNQTSLYFCARsfeQGYEQYFGPGTRLTvTEKRNfPLILESPSPNQTSL
+YFCASSlLgTg-dlwpAQHFGDGTRLSI--
+>gi|291010643|gb|ADD71699.1| immunoglobulin gamma heavy chain [Pteropus alecto]
+QVTLKES-GPGLMRPTQTLTLTCSFSGFSLST-ADMGVSWVRQPPGKALEWLATIWwdddKNYSPSLKSRLTMTKdtSKNQVLLTLTNTDPRDTATYYCA
+RTGlkvGysYVDVWGQGSPVTVS-
+>gi|281349765|gb|EFB25349.1| hypothetical protein PANDA_021873 [Ailuropoda melanoleuca]
+--SVSQMKNQVTLSERAFLIVNHSFAANKSAPpfsGVFSVLVKLCSCPENH----KRKCDGSNKG----FEATnEEKTTFPWEKLSVPMADMAVCHCA--
+-----------------
+>gi|62464905|gb|AAX83161.1| immunoglobulin heavy chain variable region [Aotus nancymaae]
+---------------GDPVPHLRCLWLLHR----Q------willeldpPAPKGRG--WSGldisivwWVHql-qrlpQES-----sh---YFSrhVQEP
+VLVE---------A------------------------
+>gi|321468336|gb|EFX79321.1| hypothetical protein DAPPUDRAFT_212574 [Daphnia pulex]
+--TISYISQEKVIDIGGSIELECSVQYVR-----DFPVLWIKIDNVDPSRTIPLSTGSNLIVKDSRFSLRYDQasSTYTLQIKDIQENDAGKYQCQ----
+---------------
+>gi|328702162|ref|XP_003241824.1| PREDICTED: roundabout homolog 2-like [Acyrthosiphon pisum]
+--RITEHPTDITVPKNEPITLGCKAEGRP-----EPTIEWYKDG-----ELLKippnGAAAGGGGDNgarsSQKVILSDGSLFFLRVAHNKKEQDSGVYW
+CVAKNVAGTEVSRNATLQVAE
+>gi|74218336|dbj|BAE23783.1| unnamed protein product [Mus musculus]
+-------------------------------------------------------------------------MLEMIRKLLLYDDHKSNLVSSPSqLS-
+iQHKLC----FTMRN
+>gi|73972829|ref|XP_851243.1| PREDICTED: similar to triggering receptor expressed on myeloid cells-like 4 [Canis familiaris]
+----EQKPELLRKLEGETISVKCLYQSWQDS---KSVKAWCRQVSARTCTVLASYPRIQGMQWKPGNSIQDwvRLGYFIVTMTKLKVEDSGFYSCGIYKS
+SE-ILT---------
+>gi|149546673|ref|XP_001515336.1| PREDICTED: similar to small intestinal receptor adhesion molecule, partial [Ornithorhynchus anatinus]
+QFSVIGPAEPILALEGKDVELPCHLKPKMNA--ESMEVRWFRSQPSDIVHLYENRKdrfQQQMEEYHKRTKLVTdamDYGSVAVRVYNVTVSDEGQFRCS
+-------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 7222 0 0
+
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+ 23 5998 * 0 * * * 8780 1009 0
+
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+ 0 * * * * * * 9293 0 0
+
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+ 0 * * * * * * 9493 0 0
+
+T 5 5668 * 4309 3964 6705 * 6014 3496 4421 5345 * 5950 6847 3441 4176 2945 1767 4292 5342 6752 5
+ 26 6803 6860 0 * * * 9497 1000 0
+
+Q 6 4477 * * 3441 * 5143 4926 5988 4947 4304 6428 6084 4352 1025 6476 4482 4517 4769 * * 6
+ 112 * 3741 * * 0 * 9586 0 1000
+
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+ 13 * 6818 * * 0 * 9499 0 1965
+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 0 * * * * * * 10034 0 0
+
+I 21 * * * * 3513 * 6964 2704 * 847 3751 * 6822 * * * * 3159 * * 21
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+
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+ 0 * * * * * * 10034 0 0
+
+C 23 6105 148 * * 6051 * 6092 * * * * 6933 * * 5793 6345 * 6851 * 7364 23
+ 19 * 6261 * * * * 10034 0 0
+
+R 24 5453 6955 3839 3343 6523 5298 4066 5100 3953 4889 6191 3605 5918 4436 4303 2163 3526 5659 6106 5409 24
+ 51 5809 5897 1443 662 * 0 10032 1239 1145
+
+S 25 4193 5573 7317 6567 2918 6289 5079 3704 * 2815 6562 5117 5589 5272 * 5042 4285 2463 * 2601 25
+ 61 6315 5123 1952 431 653 1457 10035 1118 1691
+
+S 26 3928 * 4632 3307 7117 4281 4817 5568 3936 5973 7392 4610 4345 4461 4212 1995 3179 6265 5803 6822 26
+ 174 3616 4961 1668 545 1542 607 9994 2425 1738
+
+Q 27 4055 * 3194 6224 6389 2121 5774 5493 3813 4565 6877 4372 4354 4023 4613 3335 3750 7484 6152 5619 27
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+
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+
+L 29 4804 * 4548 4855 * 2901 4196 5221 4326 4118 5535 4782 3332 4374 4288 3159 3476 4223 6112 4730 29
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+
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+ 596 * 1563 * * * 0 9207 0 7544
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+H 31 2855 * 3582 * * * 5658 5312 4778 3723 6000 3273 3095 4024 * 2228 3470 5655 * * 31
+ 1316 * 741 * * * 0 8421 0 8475
+
+S 32 4432 4007 3203 4423 4303 * * * * 4119 * 4347 2400 * * 2205 2535 * * * 32
+ 995 2870 1468 1077 927 4476 66 6442 1301 9197
+
+N 33 3269 * 4008 * * 3696 3896 * * 4057 * 3295 4080 * 2892 1899 * 3923 * * 33
+ 275 4268 3042 1000 1000 2299 328 6499 1013 9217
+
+G 34 4040 * 4279 3042 * 2820 * * * * * 3043 * 4384 3710 2040 3812 4668 * 5307 34
+ 40 5176 * 0 * 140 3431 8279 1026 8622
+
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+ 19 * 6232 * * 956 1045 10009 0 2183
+
+T 36 4763 7406 4240 4109 4608 4163 4901 4751 5296 3693 5601 3980 2974 4616 4701 4286 3657 4168 7212 3429 36
+ 19 7242 7321 0 * 308 2379 10029 1018 1875
+
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+
+L 38 6419 * * * 4753 5034 6777 2350 4327 2656 3693 6347 7110 6131 * 6164 7197 1562 5346 6403 38
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+
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+
+W 40 * 7284 * * 5793 6428 * * 6143 4434 * * * * * 7269 * 5359 219 6188 40
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+
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+ 31 6197 7001 2535 273 1695 533 9991 1353 1504
+
+L 42 7241 6122 * 6976 4189 * 5312 6991 2204 3940 6474 7473 5250 3048 1546 5059 6470 4768 * 5926 42
+ 142 4685 4192 2143 370 1000 1000 10017 1539 1560
+
+Q 43 6192 * 4485 4585 5742 4408 3687 5327 3202 4529 6964 5524 4932 1696 4307 3842 4739 5734 5916 6011 43
+ 67 5910 5104 354 2199 1511 624 9973 1310 2246
+
+K 44 4223 5434 3665 4545 6185 4223 4709 4740 3225 3798 7479 3904 4152 4272 3628 3452 3701 4930 * 5836 44
+ 175 6907 3237 2807 222 2006 413 9951 1001 2259
+
+A 45 3702 6833 3942 3173 4555 3973 6186 5975 4610 3639 6964 4210 2013 5218 5551 4241 4702 6030 5889 * 45
+ 79 6181 4653 2241 343 2365 311 9819 1122 3645
+
+G 46 4225 * 3654 3962 5710 1665 6782 5631 4645 7453 * 4139 5960 5406 4245 2857 3775 5661 6211 * 46
+ 77 4750 6054 2665 248 1424 673 9761 1441 3660
+
+Q 47 4463 6962 4525 3259 * 2973 6251 7141 2680 5060 7223 4734 4377 2747 4016 3726 4237 6126 * 5716 47
+ 45 6075 6002 2164 364 * 0 9865 1117 2997
+
+S 48 3396 7320 4269 4336 7282 2728 4815 4973 3757 5341 4363 4308 4241 3838 4953 3306 3928 4239 * * 48
+ 106 4635 5024 532 1697 * 0 9841 1706 3228
+
+P 49 4535 5152 5140 4797 4931 4906 6601 4670 6533 2547 6920 5527 1579 4403 5776 5594 4440 4648 * 5057 49
+ 33 7309 5966 0 * 1228 803 9724 1000 3649
+
+K 50 6920 * 4098 2498 * 4255 4897 4224 3558 5163 5116 4612 4668 2830 3826 4384 3828 3933 * * 50
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+
+L 51 5090 7545 6196 5039 2997 4975 5642 4557 4868 2599 6094 4494 5124 5392 4477 3456 4726 3624 3902 3856 51
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+
+L 52 6767 5269 * 7320 5331 5343 6905 2284 * 1470 3756 5674 5821 5648 * 4961 5354 2999 * 5522 52
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+
+I 53 3344 5098 * 5764 3713 4188 7252 2564 4843 3266 4166 5163 5710 6002 6685 4415 4220 3224 * 3779 53
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+Y 54 4168 5196 5715 5282 3744 3976 4507 5303 6884 4073 5528 4012 7229 4789 4527 2566 5158 4739 4829 2666 54
+ 47 5597 6445 1767 502 * 0 9933 1255 2493
+
+K 55 5475 5399 5072 5635 4185 4105 5712 3221 4272 3341 6926 5343 7050 4140 4727 3129 2838 4838 * 3471 55
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+
+V 56 4733 6049 3503 5019 4958 4034 4147 4863 5039 4215 7276 2737 5448 4304 4895 3556 3456 4708 6215 3868 56
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+
+S 57 4305 5556 3879 5497 6168 2777 5043 7241 3733 4767 7471 3497 5218 5229 5073 2640 3264 4540 6182 5029 57
+ 249 2793 6115 1796 490 2175 361 9918 3465 2880
+
+N 58 4560 * 3612 3577 6962 3638 * 5073 3354 6245 5456 3346 6845 4076 3997 3486 3189 3836 * 4563 58
+ 91 4367 6312 1974 424 3794 108 9935 1660 2729
+
+R 59 5477 * 5673 3474 4840 3287 4523 3958 3906 4182 6113 4832 4800 4162 4137 3584 3785 4196 * 3438 59
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+
+F 60 3931 * 3221 3394 5865 2919 5551 6254 3400 5096 5420 3920 4332 3736 5341 3512 4306 5607 7336 5600 60
+ 12 * 6968 * * 2467 288 9993 0 2327
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+S 61 4324 * 3623 2794 * 3679 6041 4371 3233 5497 6837 3731 2928 4318 5369 3664 5290 4423 7333 7049 61
+ 84 5896 4652 1000 1000 3590 125 9986 1296 2257
+
+G 62 4952 * 3374 3248 * 2727 5661 7385 3862 4088 7122 3257 4753 5745 4039 3312 3229 6030 * 6554 62
+ 165 3934 4546 1573 591 1878 458 9966 2094 2870
+
+V 63 5752 6579 6038 5447 3393 5494 6366 4203 4542 2928 6377 3779 5010 6206 5089 4185 3830 2769 6853 2887 63
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+
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+
+S 68 4655 * 4262 3721 6522 5730 5162 4582 3405 3959 6919 4181 7212 4702 4013 2541 2534 4479 * 6116 68
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+
+G 69 3012 6879 5707 5622 4035 3418 5140 2957 6982 3053 4272 5587 5117 6283 5171 4030 3805 3457 7548 5891 69
+ 46 * 4995 * * 2896 208 10054 0 1907
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+
+S 72 4035 * 2802 3960 7642 4447 4426 6232 4490 5944 6256 3990 3599 5070 6170 2425 3239 4400 5777 * 72
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+
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+
+D 75 5201 * 3237 4351 5340 4735 5341 6280 3768 4338 6365 3389 5078 4085 3764 2897 2974 4374 * 6002 75
+ 36 5697 7479 511 1745 2371 310 10148 1267 1560
+
+F 76 3908 4303 * 7356 2402 4345 5149 5153 6150 3039 6923 6647 5702 6504 6339 3052 5760 3203 5685 3081 76
+ 60 4871 7255 287 2472 1257 782 10151 1528 1537
+
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+ 31 5573 * 2173 362 1234 799 10134 1344 1423
+
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+G 89 1968 * 5811 5827 * 750 6325 * * 6908 * 5681 6808 * 7071 4614 * 5892 * * 89
+ 0 * * * * * 0 10118 0 1175
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+I 90 5620 6926 5549 4962 4054 6453 5851 3271 5026 3216 4446 3652 * 4960 4939 4738 2192 3173 6861 5561 90
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+Y 91 * 5489 * * 4055 7124 4974 * * 5642 * * * * * * 5867 5905 6912 293 91
+ 10 * 7221 * * * 0 10094 0 1030
+
+F 92 5508 7000 * 4816 2701 6926 4945 3464 7351 4130 6784 6827 * 4665 4543 4370 3245 4761 4792 1947 92
+ 0 * * * * 958 1043 10080 0 1187
+
+C 93 7173 108 * * * * 6310 7147 7122 6086 * * * * * 5979 * 6997 * * 93
+ 11 6995 * 1282 764 0 * 10053 1140 1020
+
+S 94 1827 6288 6118 3594 * 3212 6705 5634 4671 5241 4464 * * 3350 4524 3929 4994 3312 * 5618 94
+ 35 6030 6849 1147 866 * * 9730 1114 0
+
+Q 95 2649 5282 * 5929 4313 6721 6680 3710 3895 3406 5718 6109 6781 4506 4638 3781 4714 2039 * 6643 95
+ 232 3274 4466 1497 631 * 0 9573 2323 1000
+
+T 96 3736 5704 4517 4313 4895 3532 5982 4598 3947 5654 5775 4206 * 5152 3657 2332 3940 4677 4759 5046 96
+ 447 2025 5574 1242 793 2979 196 9582 3705 1728
+
+T 97 3427 5657 3057 4236 4260 3673 * 5134 6503 4634 6305 3169 3749 5635 5308 3449 3303 5145 * 4682 97
+ 172 3749 4714 2233 345 2950 200 9314 1792 1893
+
+H 98 4891 4867 3644 5516 6604 2853 4911 * 4797 4595 5400 3060 3639 6526 4253 2841 3536 5424 * 4847 98
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+V 99 4672 * 3760 5279 * 2550 5804 6574 4294 4769 6790 2932 4032 4960 4893 3514 4634 4518 5306 3175 99
+ 149 3657 5754 1296 755 1602 577 9230 2341 2244
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+P 100 3045 * 4265 3392 5376 3999 * 4543 3716 4874 7004 4668 3959 2993 4909 3710 4391 4280 * 4448 100
+ 242 3275 4282 1420 675 290 2455 9281 2192 2197
+
+P 101 3886 * 4313 5189 5010 6021 5006 4300 3456 2068 5210 5649 5038 4032 5947 4620 3904 4044 * 3757 101
+ 69 4427 * 2001 415 578 1600 9289 1643 1638
+
+T 102 6237 6606 4950 4620 5640 4505 5836 3557 4318 3053 4674 * * 4367 4924 3859 4135 2237 * 3215 102
+ 12 6929 * 1399 688 1238 796 9337 1220 1471
+
+F 103 5656 5343 5842 5975 1306 * * 4405 * 4037 5614 * 6222 4873 4507 4339 4104 4620 3383 4223 103
+ 34 6213 6668 1000 1000 * 0 9375 1009 1217
+
+G 104 4535 5525 6459 5614 * 855 6462 6637 4652 5330 * 5695 4386 * 6424 3064 4694 6738 6942 6656 104
+ 33 6403 6550 0 * * 0 9362 1349 1352
+
+G 105 5371 4897 3968 3064 * 3142 5123 * 4279 6550 5539 3254 3482 3336 3897 3400 3913 6427 * * 105
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+
+G 106 3681 6707 * * 6482 636 5475 6765 * 6654 6485 4940 5581 6228 5415 4697 5518 5121 5295 * 106
+ 0 * * * * 1667 546 9242 0 1298
+
+T 107 4097 * 6290 6761 * 4915 * 4467 5354 4804 6572 6781 6482 5510 * 3708 903 4010 * 4188 107
+ 43 5081 * 448 1905 * 0 9247 1240 1162
+
+K 108 * 6621 6311 5658 4304 * 5644 4988 2278 4410 4363 5014 4969 3169 2280 6534 3453 * * 3809 108
+ 17 6452 * 0 * 0 * 9123 1000 1162
+
+L 109 * * * * 6455 4813 6525 3443 6318 872 * * 6354 6473 6550 6692 6722 2070 * * 109
+ 16 6463 * 2000 415 * * 9102 1000 0
+
+E 110 6293 6351 4810 4049 * 5107 6399 3460 6500 3828 * 4710 5404 3812 3804 3651 2083 3506 * 4120 110
+ 20 6173 * 2322 322 * * 8904 1000 0
+
+I 111 4511 6097 * * 5193 * * 3156 * 4356 5355 * 5271 * 6522 4081 6284 690 * * 111
+ 0 * * * * * * 8823 0 0
+
+K 112 4766 * 4123 2599 * * 5608 4857 2703 2760 4925 * * 4612 3275 3092 3768 5897 * * 112
+ 0 * * * * * * 8240 0 0
+
+R 113 * * 3597 3402 * 1653 * * 5011 * * 4316 2983 * 2509 5207 4069 4841 * * 113
+ 0 * * 0 * * * 7078 0 0
+
+//
+�HHsearch 1.5
+NAME 56a96aae83069ea95d56b56dc6e8cd1a
+FAM
+FILE 56a96aae83069ea95d56b56dc6e8cd1a
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:44:52 2013
+LENG 172 match states, 172 columns in multiple alignment
+FILT 146 out of 1066 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCC
+CHHHHHHHHHCCCCCCHHHHHHCCCCEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9988889888589999951888827525799999999987995889987289999999999999854898989981998899985579999998578787
+659999885043688225565440536999899988999899999999999999986606664766323799
+>Consensus
+xxxxxxxxxxxrvxIixtGdExGxxxDxnxxxlxxxLxxxGxxvxxxxxvxDdxxxIxxxlxxxxxxxxxDlVittGGtgxgxxDxtxxalxxxxxxxlx
+gxxxxxxxixxxxpgxxxxlsrxxxgxxxxxxixxLPGxPxaxxxxxxxxlxpxlxxxxxxxxxxxxxxxxx
+>56a96aae83069ea95d56b56dc6e8cd1a
+MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVE
+GFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKKGS
+>gi|213966091|ref|ZP_03394279.1| molybdenum cofactor biosynthesis protein [Corynebacterium amycolatum SK46]gi|213951289|gb|EEB62683.1| molybdenum cofactor biosynthesis protein [Corynebacterium amycolatum SK46]
+--------QVRNAFVVLVGDHFE-NPDGAASLMVELLEEDGYSVDAVVSTGAVKREIRKALDTAV-VGGADLVVTVGGVGVGPRAKTPDATRKVLDVRLQ
+GIEQAIRNSGMGAGALDAGLSRGLAGVSGQTVIINLAESRAAVRDGMATI----------------------
+>gi|145608252|ref|XP_360715.2| hypothetical protein MGG_03258 [Magnaporthe oryzae 70-15]gi|145015744|gb|EDK00234.1| hypothetical protein MGG_03258 [Magnaporthe oryzae 70-15]
+-------QPMPIVRVFSTGKELlreqnevanganqphgrdklhtadpreSSIRDVNGVFLTAAFREVGAESQFLGQLADETKDIADAVSHILSSNPTpNV
+IVTSGGVSVGKFDHVRGALEQHV----HGTRILFHGLAIR-PGHPVLFAMLPNMAGRETAFFGFPGNPGAAAACFRFLAVPYVRHL--------------
+>gi|220905312|ref|YP_002480624.1| MoeA domain-containing protein domain I and II [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774]gi|219869611|gb|ACL49946.1| MoeA domain protein domain I and II [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774]
+-------WDRLQLHLAAVADPAptpkkngpavtaaaDGII----PALAALAQDIDCHVQTAPCLPADAGVVRDFLQSALK--AGAHALLLCATGDDALTA
+VRDLMERE------G-RIVAPDIGLL-PGAPAMT-----AVYEGRPVFCLPCSPAGSLTAFDALVAPALLL---------------
+>gi|315161293|gb|EFU05310.1| molybdenum cofactor synthesis domain protein [Enterococcus faecalis TX0645]
+-------GKSMKAEIIAVGTEllLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQR--SDLIVLCGGLGPTEDDLTKQVVAQHLHKS
+LVEDQEGLNRLhqffqqsKR-PMTeNNLRQVLAIEGGqvlqnptglavgsfvtEGTTSYLLLPGPPNELIPMFQQAARPLLIDA--------------
+>gi|331003726|ref|ZP_08327220.1| hypothetical protein HMPREF0491_02082 [Lachnospiraceae oral taxon 107 str. F0167]gi|330412109|gb|EGG91504.1| hypothetical protein HMPREF0491_02082 [Lachnospiraceae oral taxon 107 str. F0167]
+------PYRQKKVGIVTTGNEvyYGRIKDTFTPVVINKMKQYGAEIIAHEISSDDVEMEIECIKKVMAA-GADIVLCTGGMSVDPDDKTPYAIGQN----
+--ASRVITYGAPVL-PGAMFML-----AY-ggENenITFMGLPGCVMYEKKTIFDIVLPRI-----------------
+>gi|150377598|ref|YP_001314193.1| molybdopterin binding domain-containing protein [Sinorhizobium medicae WSM419]gi|150032145|gb|ABR64260.1| molybdopterin binding domain [Sinorhizobium medicae WSM419]
+-------VRSPRIRVIDVASV--NHETFSTRLVAECVMTSNGTIAAIETANRDAASIAAALAGE----ACDLLLLIGGTGAGRLDATAEALTLS------
+G-ASIAHGIAVRP-GDTTAI-----GRLGSTPLVALAGAPDHVFAGFLAFVQPVLDRL--------------
+>gi|329120716|ref|ZP_08249378.1| CinA family protein [Neisseria bacilliformis ATCC BAA-1200]gi|327460513|gb|EGF06849.1| CinA family protein [Neisseria bacilliformis ATCC BAA-1200]
+----------TRdFNLIIIGDEilHGSRQDKHFPYFKNLLETHGLRLNSVQYLPDERPQLAKQLERSFSDG--LPAFVTGGIGATPDDHTRQAAAEAAKC
+PLQRHPEAAALIEAVtrKRGestdspehrQRLHMADFPQGAqiipnpYNGIagftllHHHFLPGFPVMAHPMAEWVLHTHYAESF-------------
+>gi|332025568|gb|EGI65731.1| Gephyrin [Acromyrmex echinatior]
+---------QLSIGVLSIGNNLeepgkplksGYVYDISRIIIISLLKNNDFSSLDFGIVNNTSSSIKENIKKALD--KVDILVTLGSAN--DKDLLKQIL
+LEYFEAEI-----YFGNINIK-PGKSTTL--ATCKINDkIKYLLCLSGNPVTAFIIAQALLLPFLKNM--------------
+>gi|262197738|ref|YP_003268947.1| 4-diphosphocytidyl-2C-methyl-D-erythritolsynthas e [Haliangium ochraceum DSM 14365]gi|262081085|gb|ACY17054.1| 4-diphosphocytidyl-2C-methyl-D-erythritolsynthas e [Haliangium ochraceum DSM 14365]
+------GFRPRRVGMVLTELPgvKESQLGRAAANMRARLQRFDCELSDELRCAHTPEAVAAAIVRLRQG-GAGMVLVLGASAIVDrRDVVPSAIEDI---
+---G--GVVEHFGMPvDPGNLLLI-----ARLDEIPVLGVPGCARTLKPsGFDWVLARLCAD---------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+S 2 * * * * * * * * * * * * * * * 0 * * * * 2
+ 0 * * * * * * 1000 0 0
+
+Q 3 * * * * * * * * * * * * * 0 * * * * * * 3
+ 0 * * * * * * 1000 0 0
+
+V 4 * * * * * * * * * * * * * * * * * 0 * * 4
+ 0 * * * * * * 1000 0 0
+
+S 5 * * * * * * * * * * * * * * * 0 * * * * 5
+ 0 * * * * * * 1749 0 0
+
+T 6 * * * * * * * * 1020 * * * * * * * 980 * * * 6
+ 0 * * * * * * 1749 0 0
+
+E 7 * * * 2148 * 2937 * * 2181 * * * 1240 * * * * * * * 7
+ 0 * * * * * * 3120 0 0
+
+F 8 5847 * 5781 * 2633 4027 4322 5700 3660 4190 6536 * 5258 6450 4081 5800 5091 3032 4815 2144 8
+ 46 * 5003 * * * * 7444 0 0
+
+I 9 4140 6682 4256 4240 * 4389 5529 5193 2138 6313 6661 6055 3614 3790 2060 5337 5133 5659 * * 9
+ 15 6548 * 2516 277 0 * 7447 1071 1128
+
+P 10 6920 * 7053 5618 * 6166 5661 * 2762 5974 5707 6836 2123 4581 1852 3532 3659 5326 * * 10
+ 45 6779 5550 1314 742 0 * 7557 1075 1001
+
+T 11 6316 6553 * 6789 5430 6037 * 3279 5802 2638 2941 * 1642 * 4972 * 5955 3130 6466 5411 11
+ 29 5996 7832 1034 966 0 * 8044 1130 1056
+
+R 12 5430 * 7579 6173 6701 6080 7232 7226 2343 5123 * 3273 * 5745 1560 4115 2969 4914 * 6123 12
+ 25 5877 * 1125 885 0 * 8143 1137 1051
+
+I 13 2028 6185 * * 4040 6083 * 2486 * 4416 * * * * * 5033 5712 1422 * 5835 13
+ 11 7014 * 2322 322 * * 8156 1009 0
+
+A 14 1942 3904 * 3950 5639 2134 6419 4836 5286 4802 * 6694 * * 4612 3518 4904 4418 6818 5310 14
+ 0 * * * * * * 8156 0 0
+
+I 15 6761 7089 * * 4348 * * 1258 * 2242 4625 * * * * 6547 * 1980 * * 15
+ 15 * 6596 * * * * 8156 0 0
+
+L 16 5288 * * * 3545 * * 1392 * 1701 5572 * * * * * 6965 2547 * * 16
+ 6 * 7960 * * 0 * 8130 0 1039
+
+T 17 2679 7500 6063 * 7086 5365 * 3446 * 3746 7411 6254 3872 * 6730 2199 2612 2762 * * 17
+ 52 * 4828 0 * 0 * 8156 1000 1000
+
+V 18 5606 * * * 6786 7024 * 2365 * 4667 7142 * * * * 5020 1254 1934 * 6571 18
+ 0 * * * * * 0 8144 0 1269
+
+S 19 4486 * * 7121 * 486 * * * * 7015 5652 * * * 2522 5327 * * 7024 19
+ 0 * * * * * 0 8144 0 1269
+
+N 20 5043 * 1008 7605 6756 4636 7080 * 5517 5527 * 2752 7285 7486 * 3142 3422 * * * 20
+ 44 5065 * 834 1187 0 * 8150 1227 1269
+
+R 21 * * 5618 668 * 6734 6059 * 5253 6862 * 5195 4160 7515 5007 3380 3894 6964 * * 21
+ 845 1223 6073 1426 671 * * 8162 4378 0
+
+R 22 3758 6719 6994 4364 6985 4053 4860 3172 4168 2538 5474 4270 7194 5668 3500 3496 6089 3220 * 5720 22
+ 695 1423 6738 3027 189 * 0 8137 3971 1071
+
+G 23 3864 * 3713 4965 7441 652 7389 * 7125 7341 5742 5633 7034 * 6086 4683 4781 5808 7088 * 23
+ 121 4179 5291 2613 257 354 2200 8119 1461 1232
+
+E 24 6142 7563 4587 2184 * 4604 5388 4970 2813 4251 5949 6914 5624 2941 3388 4737 3654 6804 * 5025 24
+ 139 3448 * 2486 284 279 2507 8130 2039 1300
+
+E 25 4542 6080 4937 5198 * 5913 6943 2292 3908 5080 6913 4980 6073 5466 3348 4364 3122 2401 * 5116 25
+ 73 4336 * 1885 455 973 1027 8162 1456 1060
+
+D 26 4288 6280 4469 3642 5345 7016 7130 3455 4459 3017 * * 4214 4747 2745 5505 4410 3262 * 3360 26
+ 47 5943 5994 619 1519 * 0 8166 1073 1000
+
+D 27 4781 * 809 3648 * 5002 * * * 6715 * 2490 6846 6482 5768 4959 5383 * * * 27
+ 14 * 6727 0 * 2044 401 8138 1000 1165
+
+T 28 3633 5852 7191 4459 5961 4525 5694 5741 3701 4190 6930 * 5441 7119 4257 2122 2075 4464 * 5833 28
+ 27 7191 6426 3322 152 * 0 8140 1000 1190
+
+S 29 3540 6215 6068 * 4881 6782 4158 4051 * 5567 * 1027 * * 6715 2972 3849 6939 * * 29
+ 13 6825 * 0 * 2817 221 8128 1063 1333
+
+G 30 2645 * 7428 6464 5042 2101 6198 5272 6894 4106 6236 * 7056 6107 4484 2081 3153 5699 * 7445 30
+ 22 * 6024 * * 409 2018 8128 0 1276
+
+H 31 2974 * 5535 5152 5218 5103 4226 4864 5628 3971 7130 7273 2060 4293 3728 4117 4744 4668 6250 3878 31
+ 0 * * 0 * 590 1576 8145 1097 1184
+
+Y 32 3490 7166 7096 5986 3062 5313 * 3465 4497 2531 3642 6042 * 6262 7407 4861 4189 3558 4350 3462 32
+ 15 * 6590 2000 415 0 * 8171 1012 1012
+
+L 33 4394 6803 * * 4405 * 6885 1890 * 1104 5334 * * 7242 * * 6087 3230 * * 33
+ 12 6921 * 1000 1000 * 0 8155 1005 1039
+
+R 34 1973 4859 6872 4224 7480 4618 * 4258 3338 5839 4969 6580 5135 4224 3688 3963 3929 3450 * 6559 34
+ 12 6900 * 2000 415 * 0 8170 1002 1039
+
+D 35 2239 * 3939 2509 * 4244 6931 * 4035 6277 * 4130 5750 4628 3471 2705 5347 6263 7094 6996 35
+ 0 * * * * * 0 8170 0 1039
+
+S 36 3849 6069 * 3748 4129 7211 6034 3888 5440 1720 5784 7440 * 5022 3602 4699 4394 4246 4942 4068 36
+ 11 7001 * 2000 415 * 0 8170 1000 1039
+
+A 37 3773 5002 7125 * 3936 7398 * 3470 * 816 5336 * * * * 7098 * 3243 7290 6056 37
+ 14 * 6684 2322 322 0 * 8170 1039 1039
+
+Q 38 4103 6892 4391 2377 4850 5940 5079 6025 3495 4648 6278 4772 5963 3550 2758 3620 3855 * 7036 6382 38
+ 42 * 5137 * * * 0 8174 0 1017
+
+E 39 3348 * 4078 2321 7147 4177 6885 * 3170 4976 5454 4180 6918 4224 2828 3134 4861 * * * 39
+ 74 4477 7623 192 3008 * 0 8107 1387 1297
+
+A 40 2892 5331 5580 5504 4122 * 3775 4224 5503 3262 5377 4924 5514 4531 3146 4869 7294 5378 3643 3220 40
+ 65 4936 6437 1556 600 1548 604 8109 1398 1350
+
+G 41 5542 * 4172 4954 6696 479 6996 * 5704 5563 6152 5999 6293 6970 5417 5504 7069 * * 6340 41
+ 69 4942 6122 581 1593 488 1800 8130 1288 1319
+
+H 42 2882 3995 6045 7651 3449 3211 4394 3120 5086 3478 5410 * * * 7302 5570 7451 3083 4756 3497 42
+ 53 5000 7651 2540 272 642 1477 8155 1208 1241
+
+H 43 5973 * 3416 1855 6837 6809 3967 5541 3297 4631 * 4489 5309 4702 3878 3652 3939 4385 * * 43
+ 34 5405 * 342 2246 1748 510 8172 1170 1087
+
+V 44 4119 5671 7156 * 5207 7214 5118 2967 * 2590 * 7589 3874 * 7165 4760 4092 1416 * 6881 44
+ 39 6737 5862 3408 143 0 * 8170 1121 1039
+
+V 45 3958 6978 4594 3868 5401 4739 6318 2736 3916 4260 7221 4354 7006 4969 4008 4495 3291 2753 6368 6472 45
+ 21 * 6128 * * 0 * 8192 0 1102
+
+D 46 3053 * 3077 4447 4244 3304 5606 5798 4258 5291 6434 6026 6754 4697 2969 3606 4683 4908 6335 3725 46
+ 0 * * * * 0 * 8190 0 1061
+
+K 47 3722 6242 7003 3909 4389 4664 4597 3093 5507 3715 5363 6266 5570 5613 3915 4378 3162 3157 7386 3838 47
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+//
+�HHsearch 1.5
+NAME 5b39e5a7108ee75bcacb74b9050dfe57
+FAM
+FILE 5b39e5a7108ee75bcacb74b9050dfe57
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:02:50 2013
+LENG 152 match states, 152 columns in multiple alignment
+FILT 7 out of 9 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
+HHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCC
+>ss_conf PSIPRED confidence values
+9721477899999999999998766523530012333256169960606889999999742532046889997099999999885042103666777511
+0767877533336504888766752131478330022887699998863489
+>Consensus
+mxxxxxxxvxfxtaxasikliqasxvldlteddfdfltxdxvwiatdrxrarrxveacvygtldfvgyprfpapvefiaaviayyvhpvniqtaclimeg
+aefteniingvexpvkAAElfafTLrvrAGxkexvxxAEeNxRqkLRAxGvm
+>5b39e5a7108ee75bcacb74b9050dfe57
+MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG
+AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM
+>gi|89888099|ref|YP_512793.1| gpD [Enterobacteria phage ID18 sensu lato]gi|71843204|gb|AAZ49372.1| gpD [Enterobacteria phage ID18]gi|71843217|gb|AAZ49384.1| gpD [Enterobacteria phage WA14]
+MK-ANENAVAFQTAIASIKLIQASSVLDLTEDDFEFLTRDRVWIATDRSRARRAIEACVYGTLDFVGYPRFPAPIEFIAAVIAYYVHPVNIQTACLIMEG
+AEFTENIINGVDAPVKAAELFAFTLRVRAGNTELITYAENNAREKLRAQGVM
+>gi|262064213|gb|ACY07191.1| D [Enterobacteria phage G4]gi|262064224|gb|ACY07201.1| D [Enterobacteria phage G4]
+MSKSNESAVAFQTAIASIKLIQASSVLDLTEDDFDFLTRDRVWIATDRSRARRAIEACVYGTLDFVGYPRFPAPVEFISAVIAYYVHPVNIQTACLIMEG
+AEFTENIVNGVERPVKASELFAFTLLVRAGNKDLIGHAETNIREQLRAQGAM
+>gi|89888658|ref|YP_512413.1| gpD [Enterobacteria phage WA13 sensu lato]gi|71842768|gb|AAZ48973.1| gpD [Enterobacteria phage ID32]gi|71842779|gb|AAZ48983.1| gpD [Enterobacteria phage NC35]gi|71842791|gb|AAZ48994.1| gpD [Enterobacteria phage WA13]gi|71842801|gb|AAZ49003.1| gpD [Enterobacteria phage WA45]
+MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG
+AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASGV-
+>gi|89888612|ref|YP_512373.1| gpD [Enterobacteria phage ID2 Moscow/ID/2001]gi|71842745|gb|AAZ48952.1| gpD [Enterobacteria phage ID2 Moscow/ID/2001]
+MN-SNESAVAFATALASIKLIQASSVLDLTEDDFDFLTRDRVWIATDRSRARRAIEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG
+AEFTENIINGIDQPVKAAELFAFTLRVRAGNTDHVTHAETNVREQLRAQGVM
+>gi|242346747|ref|YP_002985209.1| gpD [Enterobacteria phage St-1]gi|240129558|gb|ACS44791.1| gpD [Enterobacteria phage St-1]
+MN--IVSDVNYATSVAALRMLQASAVLDITEEDFDFLTGDKIWIATDRNRARRCVEACVYGALDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLVMEG
+AEFSENIINGVERPVNAAELFAYTLRIKAGFKETVIDAEENARQKLRANGL-
+>gi|15432|emb|CAA25348.1| unnamed protein product [Enterobacteria phage alpha3]
+----------------------------------------------------------------------------------------------------
+---------------NAAEPLRYTLRIKAGFKETVMDAEENARQKLRANGL-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 1326 0 0
+
+S 2 * * * * * * * * 2627 * * 1558 * * * 1004 * * * * 2
+ 1004 * 996 * * * * 1326 0 0
+
+Q 3 * * * * * * * * 1575 * * 1547 * 1634 * * * * * * 3
+ 0 * * * * 634 1491 1252 0 1123
+
+V 4 2390 * * * * * * * * 2114 * * * * * 1393 * 2340 * * 4
+ 0 * * * * 0 * 1276 0 1007
+
+T 5 * * * * * * * 2444 * * * 1052 * * * * 2608 2558 * * 5
+ 0 * * * * * * 1326 0 0
+
+E 6 2558 * * 629 * * * * * * * * * * * * * 2444 * * 6
+ 0 * * * * * * 1326 0 0
+
+Q 7 * * * * * * * * * * * 2627 * 2608 * 988 2558 * * * 7
+ 0 * * * * * * 1326 0 0
+
+S 8 1052 * 1500 * * * * * * * * * * * * 2608 * * * * 8
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+
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+
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+
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+
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+
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+
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+L 20 * * * * * * * * * 629 1500 * * * * * * * * * 20
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+E 99 * * * 0 * * * * * * * * * * * * * * * * 99
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+G 100 * * * * * 0 * * * * * * * * * * * * * * 100
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+A 101 0 * * * * * * * * * * * * * * * * * * * 101
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+E 102 * * * 0 * * * * * * * * * * * * * * * * 102
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+
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+
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+I 108 * * * * * * * 588 * * * * * * * * * 1580 * * 108
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+R 113 2627 * * * * * * * * * * * * 2682 552 * * * * * 113
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+K 116 * * * * * * * * 517 * * 1730 * * * * * * * * 116
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+A 117 0 * * * * * * * * * * * * * * * * * * * 117
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+
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+M 152 * * * * * * * * * * 0 * * * * * * * * * 152
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+
+//
+�HHsearch 1.5
+NAME 5b7549a440ece6efc515d1ecf5eab975
+FAM
+FILE 5b7549a440ece6efc515d1ecf5eab975
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:12:57 2013
+LENG 95 match states, 95 columns in multiple alignment
+FILT 103 out of 270 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCEEEEECHHHCCCCC
+>ss_conf PSIPRED confidence values
+98877756304766778653688788998862158988999866860179987543898868985879689999986990159997868810479
+>Consensus
+xxSxGxRxxTRxxxxkxxRxxGxxxxsxxlxxfxxGDxVxIxidpsvxkGmPhxxyhGkTGxVxxxxgxAxxVxvxxgxxxKxixvrxeHlkxxx
+>5b7549a440ece6efc515d1ecf5eab975
+PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQE
+>gi|159042508|ref|YP_001541760.1| 50S ribosomal protein L21e [Caldivirga maquilingensis IC-167]gi|157921343|gb|ABW02770.1| Ribosomal protein L21e [Caldivirga maquilingensis IC-167]
+ARTHGYRFKSRKLLSKTPREKGRPGLFKWLLAryYRVGDKLAIDIDPVYVSTAPHKRYQGRVGTLIGWRGRALVLEVNFMGERRIIITTPEHVKPLN
+>gi|296241777|ref|YP_003649264.1| 50S ribosomal protein L21E [Thermosphaera aggregans DSM 11486]gi|296094361|gb|ADG90312.1| LSU ribosomal protein L21E [Thermosphaera aggregans DSM 11486]
+RAPRGLRHRTRKLLRKNVRERGsIPPLSLLLVEYKEGDVVHIKINPSVHEGMPHRRYHGRTGVIVGRRGLSYIVKVMAGDKEKILFVRPEHLRLAS
+>gi|167042538|gb|ABZ07262.1| putative ribosomal protein L21e [uncultured marine microorganism HF4000_ANIW133F6]gi|167043078|gb|ABZ07789.1| putative ribosomal protein L21e [uncultured marine microorganism HF4000_ANIW141C7]
+RRSHGTRQGTRSILRRSKTQRGRINIARVMHQYEIGDRVAVVLDGAQQKGMPHRRFQGATGIIQAQQGRAWVIDLHDKNMAKTVVARAEHLRPLE
+>gi|48477461|ref|YP_023167.1| 50S ribosomal protein L21e [Picrophilus torridus DSM 9790]gi|73914084|sp|Q6L228.1|RL21_PICTO RecName: Full=50S ribosomal protein L21egi|48430109|gb|AAT42974.1| large subunit ribosomal protein L21E [Picrophilus torridus DSM 9790]
+KMSKGPRSGSRRVMTKSVKNKGMPKVNEMMKTFEVGDRAAIVINSAVPDGMPHHDFQGITGVITGMQGSCYILSFKVGNVEKKVIAAPVHLRKV-
+>gi|339757944|gb|EGQ43201.1| ribosomal protein L21E [Candidatus Nanosalina sp. J07AB43]
+QKSQGSQQGARKKLKRDSREKT--TVNDRLQSFEQGDKALIHVDSSVQEGRPHMRFHGKTADVTGQRGDAYIVEFDEGDETKTLQIDPAHLNE--
+>gi|148688544|gb|EDL20491.1| mCG5613 [Mus musculus]
+TNTKGKRRGTRYMFSRPFRKHGIVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNkqVKGkiLAKRINVRIEHIKHS-
+>gi|290559669|gb|EFD92995.1| Ribosomal protein L21e [Candidatus Parvarchaeum acidophilus ARMAN-5]
+--GNGIHKRSRKRLKLDINERGKIDIKKALQSFDVGDKVVIDPDSRIQRNLPQRSFFGAVGVVLNKKGKAYTIEVKQQGKyPKKIDVLPVHMKRL-
+>gi|162606458|ref|XP_001713259.1| 60S ribosomal protein L21 [Guillardia theta]gi|12580725|emb|CAC27043.1| 60S ribosomal protein L21 [Guillardia theta]
+SRSKGKKSNTRYILTKSKKLTGIK-SNIIINNVSIGDLVDIVIDPSFQSTMPFKFYHGKTGEVFSLNSNSLGIKIQkiVGNRkvCKKINIGLEHLRI--
+>gi|255514076|gb|EET90339.1| Ribosomal protein L21e [Candidatus Micrarchaeum acidiphilum ARMAN-2]
+------------------------SIRDYIKDFQIGERVAIVPKGNF-GNIPHPRYKGKIGEVVERRGKAYVVQIKVMNATRKLVVPAVHLEK--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+P 1 2701 * * * * * 6048 * 2296 * * * 2011 3031 3304 3546 4119 * 6304 * 1
+ 0 * * * * * * 3951 0 0
+
+S 2 4204 * * * * 6686 1904 6513 2734 5710 4059 2818 7194 5899 2116 4947 * * * * 2
+ 0 * * * * * * 4274 0 0
+
+S 3 4815 * * * * 4301 4688 * * * * * 3814 * * 558 3006 * * * 3
+ 0 * * * * * * 4327 0 0
+
+N 4 6161 * * 4794 3331 5839 2123 * 1765 * * 3022 * 4568 4410 5639 5854 * 6729 4314 4
+ 0 * * * * * * 4327 0 0
+
+G 5 * * * 5009 * 63 * * * * * * * * * 6427 * * * * 5
+ 0 * * * * * * 4327 0 0
+
+P 6 * * * 4984 2610 * * 4901 3243 3011 6411 5775 3199 6755 4618 5625 4376 5538 6603 1986 6
+ 0 * * * * * * 4327 0 0
+
+L 7 * * * * * 5189 5426 * 3919 4600 * 6762 * 4666 334 * * * * * 7
+ 0 * * * * * * 4382 0 0
+
+E 8 2968 4906 * 6180 5247 4857 3116 * 3331 * * 5605 * 5026 2163 2149 5419 * * 5257 8
+ 0 * * * * * * 4382 0 0
+
+G 9 6485 * * * * 1458 * * 2190 * * 3860 * 6182 1817 6645 * 5099 * * 9
+ 0 * * * * * * 4382 0 0
+
+T 10 4143 * 5189 * * 6344 * * * * * * * * * 2141 563 * * * 10
+ 40 5189 * 1000 1000 * * 4382 1072 0
+
+R 11 * * * * * 5244 * * * * * * * * 39 * * * * * 11
+ 0 * * * * * 0 4327 0 1072
+
+G 12 7162 * 3117 * 6201 4046 4289 * 2148 * * 4896 * 4738 3948 2924 6687 * * 2002 12
+ 0 * * * * 0 * 4327 0 1072
+
+K 13 5392 6513 * * 6762 * * 3767 1454 2123 2430 * * * 4308 * 5865 5730 * 5975 13
+ 15 * 6632 * * * * 4383 0 0
+
+L 14 6618 * * * 1287 * * 5695 * 1163 3640 * * * * * * * * 4880 14
+ 0 * * * * * 0 4397 0 1000
+
+K 15 2897 * * 6746 * * * * 2262 * * 5211 * 4818 3194 1549 2894 * * * 15
+ 0 * * * * * 0 4397 0 1000
+
+N 16 * * * * * * * * 837 5502 * 4986 * 3910 1720 * 5912 * * * 16
+ 82 * 4173 1585 585 * 0 4397 1000 1000
+
+K 17 3814 * 2506 6743 * 4035 4371 * 2467 * * 4899 2568 6863 4851 2762 4330 6547 * * 17
+ 0 * * * * * 0 4317 0 1226
+
+P 18 5352 * * * 1380 * 5818 3956 4045 4708 * 5813 2647 6881 4769 5627 * 2899 * 4900 18
+ 73 * 4345 1000 1000 803 1228 4317 1000 1226
+
+R 19 * * * 5241 * 4840 * * 3296 * * 5418 * 5111 372 * 6425 * * * 19
+ 0 * * 0 * 0 * 4294 1030 1281
+
+D 20 5462 * 4696 1722 * 4222 6988 * 2272 6040 * 4367 4558 4056 3651 4820 4080 5901 * 6630 20
+ 0 * * * * * * 4403 0 0
+
+R 21 7235 * * * * 5672 1776 * 2025 * * 5221 * 5700 1661 4464 6040 6227 * * 21
+ 0 * * * * * * 4403 0 0
+
+G 22 * * * * * 186 * * 5358 * 6736 5700 * * 4942 5997 5674 * * * 22
+ 201 3597 4409 0 * * * 4403 1286 0
+
+T 23 4518 5217 * 6312 6571 5852 6162 3060 4330 3343 2868 4577 4566 6041 3742 6537 4092 2263 * 5778 23
+ 45 * 5018 * * * 0 4329 0 1150
+
+S 24 4630 6292 * 5945 * 6191 * 3171 5974 4030 * 4050 1604 5660 * 2804 6944 2708 * 6027 24
+ 23 * 5974 * * 633 1494 4305 0 1279
+
+P 25 5615 5222 5539 6970 * 3435 4190 6324 4029 5106 7401 3762 1720 6887 3796 2938 4176 6243 * 6560 25
+ 0 * * * * 1527 615 4357 0 1135
+
+P 26 4592 * * * 6779 * * 2239 * 1428 7023 5230 3593 * * 5380 4042 2610 * * 26
+ 0 * * 0 * 0 * 4387 1074 1074
+
+Q 27 3618 * 6038 * 5825 4268 * * 4486 5239 * 3512 5864 5021 4723 1210 2854 5742 * * 27
+ 0 * * * * * * 4425 0 0
+
+R 28 * * 4302 6396 5147 * * 4359 2832 4701 * 6632 7288 7109 1702 5272 1768 6090 * 5942 28
+ 0 * * * * * * 4425 0 0
+
+A 29 3050 5142 * * 4333 * 5239 3901 5723 3177 4215 6932 * * 4284 6697 5175 4481 5312 1483 29
+ 0 * * * * * * 4425 0 0
+
+V 30 * * * * 4987 6891 * 2575 * 912 2294 5674 * * * * 7288 5422 * 7004 30
+ 0 * * * * * * 4425 0 0
+
+E 31 3858 * 6643 4111 * 5142 4287 5725 3269 5329 * 6049 * 1913 2530 5620 3737 6292 * 3752 31
+ 0 * * * * * * 4425 0 0
+
+E 32 5825 6932 3493 2513 * * * 3501 3465 * * 3184 5608 4034 6750 3628 2967 3040 * * 32
+ 40 5825 6687 1000 1000 * * 4425 1029 0
+
+F 33 * * * * 1061 * 5140 6360 * * * * * * * 5224 * 5185 * 1232 33
+ 0 * * * * * 0 4418 0 1000
+
+D 34 7018 * 3313 2480 * * 4639 * 1341 * * 3620 * 4337 3316 4791 6620 * * * 34
+ 0 * * 1000 1000 0 * 4418 1000 1000
+
+D 35 * * 5034 3250 * * * 2523 2828 4550 5186 5069 3626 5166 4231 6965 6553 1961 * 6377 35
+ 77 5245 5300 1000 1000 * * 4437 1072 0
+
+G 36 * * 6207 * * 38 * * * * * 6296 * * * * * * * * 36
+ 0 * * * * * 0 4391 0 1096
+
+E 37 * * 552 2668 * * 6335 * * * * 6862 * 2956 * 6521 * * * * 37
+ 0 * * * * * 0 4391 0 1096
+
+K 38 6335 * * * 5444 * * 2539 1634 3982 5846 * * * 3456 5169 4873 * * 2080 38
+ 0 * * * * 0 * 4391 0 1096
+
+V 39 4036 * * * * * * * * 5834 * * * * * * * 118 * * 39
+ 0 * * * * * * 4437 0 0
+
+H 40 3149 * 1269 * * 6429 2386 4583 * 4881 * 6580 * * * 4881 4922 3317 * 5957 40
+ 0 * * * * * * 4437 0 0
+
+L 41 * * * * * * * 442 * 3105 * * * * * * * 2760 * * 41
+ 0 * * * * * * 4437 0 0
+
+K 42 6052 6697 2735 * 6301 * 5254 3179 1656 4351 6073 5860 * * 4632 * 5185 2253 * * 42
+ 0 * * * * * * 4437 0 0
+
+I 43 3474 4308 * * * 2759 * 1337 * 4505 * * 4613 * * * 6139 2206 * * 43
+ 17 6429 * 3585 126 * * 4437 1022 0
+
+D 44 * * 1052 3465 * * 5737 * 4701 * 4061 1748 * * * * 6350 * * * 44
+ 0 * * * * * * 4437 0 0
+
+P 45 4721 * * * * 1993 * * * * * * 1006 * * 2438 * 5146 * * 45
+ 0 * * * * * * 4437 0 0
+
+S 46 2063 6713 * * 6899 6965 * * * 6061 6429 4958 * * 4427 995 3556 5834 * 5300 46
+ 0 * * * * * * 4437 0 0
+
+V 47 7192 5300 * 4297 3462 * * 1910 7061 6536 7040 * * 3885 * * 6653 1386 6315 4023 47
+ 34 6429 6397 2807 222 * * 4437 1022 0
+
+P 48 * * * * * * 1416 5156 6026 * 5552 * 4266 1310 5624 4879 * 4904 6749 6936 48
+ 0 * * * * 0 * 4420 0 1018
+
+N 49 5414 * 4245 4344 * 6397 5842 * 717 7061 * 4988 * 6665 4149 3764 5973 5798 * 5371 49
+ 11 7061 * 0 * * * 4437 1000 0
+
+G 50 * * * 6061 * 252 * * * * * 4523 * * 5300 * 3712 * * * 50
+ 0 * * * * * * 4437 0 0
+
+R 51 4472 6061 * * 6867 * * 6397 * 4146 639 5300 * 4341 3875 5326 4493 6818 * * 51
+ 0 * * * * * * 4437 0 0
+
+F 52 4536 * * * 4343 * * * * * * * 202 * * * 5146 * * 6665 52
+ 22 * 6061 * * * * 4437 0 0
+
+H 53 6653 * 6463 * 3187 * 644 * * * * 5615 4187 4799 * * * * * 3084 53
+ 14 6653 * 0 * * 0 4420 1011 1037
+
+P 54 5731 * * * * 6793 3649 * 1396 7432 5722 6370 2615 4613 2001 5528 * * * * 54
+ 0 * * * * * 0 4420 0 1037
+
+R 55 5106 4034 6417 * 3280 6929 6089 5981 5995 6235 6663 6564 * * 1175 5092 * 3442 * 2806 55
+ 0 * * * * * 0 4420 0 1037
+
+F 56 * * * * 1385 * * * * 5251 * * * * * * * * * 759 56
+ 0 * * * * * 0 4420 0 1037
+
+D 57 * 5910 6223 * 5586 * 528 6663 6328 * * 6574 5251 2483 * 5818 * * * * 57
+ 0 * * * * * 0 4420 0 1037
+
+G 58 * * * * * 79 * * * * * * * * * 5219 * * 5251 * 58
+ 0 * * * * * 0 4420 0 1037
+
+Q 59 4567 * * * * * * 6417 1254 4187 * * * 4240 1476 5731 7017 * * 4928 59
+ 0 * * * * * 0 4420 0 1037
+
+T 60 * * * * * * * 4244 * * * 5251 5126 * 5731 * 478 2682 * * 60
+ 0 * * * * * 0 4420 0 1037
+
+G 61 4463 6595 * * * 166 * * * * * * * * 5219 * * * 5251 * 61
+ 0 * * * * * 0 4420 0 1037
+
+T 62 6645 * 5722 3002 * * * 3352 3063 6791 7327 * * * 2010 6863 2747 2268 * * 62
+ 0 * * * * * 0 4420 0 1037
+
+V 63 * 6653 * * * * * 1843 * 5813 * * * * * 5251 * 584 * * 63
+ 0 * * * * * 0 4420 0 1037
+
+E 64 6237 5126 * 4210 2250 * * 3889 6642 3732 6795 6586 * 5927 * * 3635 2243 3675 2887 64
+ 0 * * * * 0 * 4420 0 1037
+
+G 65 5692 * 4881 4636 * 1297 6369 7048 5573 * * 1464 * * * 3650 5883 * * * 65
+ 0 * * * * * * 4403 0 0
+
+K 66 6368 * * * 6523 * * 3232 2196 5392 4970 * 6315 3819 4114 * 4389 1364 5701 * 66
+ 17 6455 * 1000 1000 * * 4403 1004 0
+
+Q 67 6193 * * * 5866 4174 * * 4397 * * 3225 * 3121 1572 4982 1855 * * * 67
+ 0 * * * * * * 4394 0 0
+
+G 68 * * * * * 970 * * 2780 * * 5413 2819 3522 3841 6025 7285 * * * 68
+ 0 * * * * * * 4394 0 0
+
+D 69 * * 3659 5804 * 6971 2827 * 2760 * * 3600 * * 1292 3638 5386 6455 * * 69
+ 0 * * * * * * 4355 0 0
+
+A 70 487 3808 * 6036 * 4314 * * * * * * * * * 2915 5859 * * * 70
+ 0 * * * * * * 4355 0 0
+
+Y 71 * * * * 4497 * * 3954 * 3002 4062 * * * * * * 1787 4727 1399 71
+ 0 * * * * * * 4355 0 0
+
+K 72 5892 * * 3899 * 1196 * 2678 3867 3566 * * * * 5859 * 4789 3096 * * 72
+ 0 * * * * * * 4355 0 0
+
+V 73 * * * * * * * 2099 * 2966 * * * * * * * 647 * * 73
+ 0 * * * * * * 4355 0 0
+
+D 74 4415 * 4427 1724 * 6325 * 2226 3040 5401 6064 6455 * 4079 4683 4327 * 4103 * * 74
+ 0 * * * * * * 4355 0 0
+
+I 75 * 7373 * * 4575 * * 1895 6455 3558 4542 * * * * * 6754 903 * * 75
+ 42 6455 5882 1000 1000 * * 4355 1004 0
+
+V 76 7019 * 5488 6265 6724 6027 4103 * 2347 * 5250 1824 6016 4773 3326 5757 3776 5182 6575 3514 76
+ 731 1331 * 1000 1000 * 0 4334 2341 1022
+
+D 77 * * 2127 5488 4313 * 6928 3838 3687 3870 6858 6431 * 5566 * * * 1263 5941 * 77
+ 0 * * * * 0 * 4334 0 1022
+
+G 78 * 6953 6273 * * 909 * 6667 3374 * 4570 3658 * 3601 2989 6588 * * * * 78
+ 30 5585 * 1000 1000 * * 4355 1052 0
+
+G 79 * * 2982 5272 * 1580 3825 * 6588 * * 1845 6163 * 6985 4143 5671 4167 * * 79
+ 481 1818 * 1000 1000 * * 4355 1990 0
+
+K 80 4052 * * 3700 * 6667 6730 3232 1577 2834 4633 * * * 3237 4824 6542 3851 * * 80
+ 303 2402 * 1210 817 * * 4355 1664 0
+
+E 81 2814 6006 5742 2210 6828 5892 * 5023 3375 4565 6511 5398 3981 5040 3328 7007 3259 4422 * 5294 81
+ 0 * * * * * * 4355 0 0
+
+K 82 * * * * * * * * 113 * * * * 6036 4050 * * * * * 82
+ 24 5892 * 2000 415 * * 4355 1037 0
+
+T 83 * * 6588 4690 * * 5279 3666 2345 4877 * * * 5827 1545 * 2354 4869 * 5299 83
+ 0 * * * * * * 4355 0 0
+
+I 84 * * * * 4746 * * 1165 * 1772 * * * * * * * 2159 * * 84
+ 0 * * * * * * 4355 0 0
+
+I 85 * 5044 5579 * 3605 * 2891 1496 * * * 2397 * 4703 * 3772 6036 4927 * 5171 85
+ 0 * * * * * * 4355 0 0
+
+V 86 3013 * * * * * * 2551 * 4676 * * * * * 4673 3389 911 * * 86
+ 0 * * * * * * 4355 0 0
+
+T 87 5423 * 5562 * * 4868 4616 * 4983 3256 * 6001 5594 * 747 4855 3975 * * 6168 87
+ 0 * * * * * * 4355 0 0
+
+A 88 3322 * * * 4386 * * 2008 6363 5245 * * 1305 6776 * * 4635 3171 * * 88
+ 0 * * * * * * 4355 0 0
+
+A 89 3564 * 3651 634 * * * * * * * 5859 * 4256 * * * 3038 * * 89
+ 0 * * * * * * 4355 0 0
+
+H 90 * * * * * * 45 * * * * * * 5017 * * * * * * 90
+ 0 * * * * * * 4355 0 0
+
+L 91 * * * * * * * 2183 * 1139 5086 * * * * * * 1755 * * 91
+ 0 * * * * * * 4355 0 0
+
+R 92 7315 * * 5383 6474 * 6533 6750 1352 6881 * 5253 * 4971 1408 5307 5344 4228 * * 92
+ 24 5892 * 2000 415 * * 4355 1037 0
+
+R 93 4371 * * 4635 * 5882 3307 6006 2169 4848 6158 * 1446 4779 3564 * 5742 * * * 93
+ 21 * 6101 * * * * 4355 0 0
+
+Q 94 6284 5924 5704 * 3860 * 6441 4586 * 2583 * 6850 * 2296 * 1409 * 4237 * 5593 94
+ 0 * * * * 0 * 4177 0 1011
+
+E 95 4623 * * 2949 * 4265 * * 1243 * * 3367 5691 4605 4773 4514 4290 3909 * * 95
+ 0 * * 0 * * * 3401 0 0
+
+//
+�HHsearch 1.5
+NAME 5b8f9d914431e9d2b55e563b03e7b909
+FAM
+FILE 5b8f9d914431e9d2b55e563b03e7b909
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:30:08 2013
+LENG 206 match states, 206 columns in multiple alignment
+FILT 56 out of 58 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCC
+CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECEECCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCCCCEEEEECCCEEE
+EEECCC
+>ss_conf PSIPRED confidence values
+9854335689867887635667987356978100899999998653438683242066445556654546755402113120347542036999828474
+6478875015089999999999887426837998853586538761200304588775789994164177568999888658998885127984666897
+776279
+>Consensus
+xqxxxxlrpxpsdxlpxxxlxexpdpxxxPkxxdLxxxxLrxxLGxxfDxxxmSixxPxxxxxxxxxxxxxxxxlxxxdxxxrxxxxxxlpxexxxlxfx
+xxxxxGxxxxxsxxxxrxlrxWLxxxtxCpvxyxWxDLGxxFWPRwIKxGxCxxxxSCSxPxGMxCkpsxsxxlxlLRWxCxxxxxxxCxWxxvxyPiit
+eCxCsC
+>5b8f9d914431e9d2b55e563b03e7b909
+MQHYLHIRPAPSDNLPLVDLIEHPDPIFDPKEKDLNETLLRSLLGGHYDPGFMATSPPEDRPGGGGGAAGGAEDLAELDQLLRQRPSGAMPSEIKGLEFS
+EGLAQGKKQRLSKKLRRKLQMWLWSQTFCPVLYAWNDLGSRFWPRYVKVGSCFSKRSCSVPEGMVCKPSKSVHLTVLRWRCQRRGGQRCGWIPIQYPIIS
+ECKCSC
+>gi|99030980|gb|ABF61775.1| noggin1 [Nematostella vectensis]
+--------------DPPVRLSLPPELNFGILPTNINREELLAILGQDYDREYVAETFSEVLLR------KTNKSIYDNENFYRKTLVKSMPEGLRKLDFQ
+--M-PGEGRNLGPKASRKLQLWLWELSSCPVYQKWKDQGQLIWPRYRNIGRCSRKSTCSYPGGMKCKRSKTKRVALLRWFCRG---KLCQWLKFFVSVIT
+ECSCQC
+>gi|225691084|gb|ACO06226.1| noggin 2 [Schmidtea mediterranea]
+--------------------------NFKTEEIARAAfkltngQLLKLLNRKNFNSNFMSITEPESSNDIKQ--FYISKSLNLIE-KQNQ-------KSF
+lrKAL----QLFHLKKFRKTinRDFRRKLRTFLDLFSWCPVTYQWKDMGPKFWPRWIKQGSCaNLSKSCSYPEGLVCQEYEHKNIAVLRFLCmSDWAIDK
+CKWYKIYIPFLLTCRCGC
+>gi|225713144|gb|ACO12418.1| Noggin precursor [Lepeophtheirus salmonis]gi|290462987|gb|ADD24541.1| Noggin [Lepeophtheirus salmonis]
+------------DTGPLQRAITYTNPLVplefwekakrKPRRKHLKIDLLLRKMGQDFDSSWMSASKPQKDL-------KSVVEISddQVAELVEQVSDL
+NLKEDLSNIlsisPFNnesekdddtKTRdDDGEpRIKeeivSSKDitqMANLLQQWLIKKSSCPVTYKWKDLGEYFWPRWIRMGSCTQEKsgfvdkkpNC
+SWPKGLHCVPGEALTLQILRWHCKRRRphigsskrdrPMKCKWYKVPYPVTSSCKCDC
+>gi|225691090|gb|ACO06229.1| noggin-like protein 4 [Schmidtea mediterranea]
+--------------LKVKVLSEKIDPILfndlMPESHSLHEGRLMKILGDRFDSFWTSVNTPHN--------LGYETEVS-YDPKLE--------IFLDS
+LNITEI----RGQPISFEMKRLIQNWLVNKATCKISYYWEDLGNLFWPRFIKKTICVntNSESCSWPPGMKCGLSGPMKIHHLRWTC-------------
+------------
+>gi|118344598|ref|NP_001072068.1| noggin4 [Takifugu rubripes]gi|59800376|gb|AAX07475.1| noggin4 [Takifugu rubripes]
+---FLQLRAsLPSYSQPIRtytllANIED--YHYMPKPTERRASRLLRLLGSSLDLFWMSIEKPSEVS--GSHPddlvpLHGDKRLEKAAALNQQK----
+LEKEAEALELGF-LP--------PQVASSVRAWLVHSAICRLRHRWVDLGPAFWPRWLRQTDCEswdGGRSCSFPGGMECVRAKTTHIKILAWHCsESRG
+EdgsrgnksdvrtgaemgevmKRCVWRQVPYPVVTACTCSC
+>gi|225691092|gb|ACO06230.1| noggin-like protein 5 [Schmidtea mediterranea]
+-------------------------------------KKLKKILDSDhlFD-NWLALTKPAEIYIP----LNGT---NKID--SRLRNLIK----MKNFV
+FKN--KRGEKMNLTSDILDSIKLWLEEESSCQMEYIWHELEPSFWPRWIKKGLCVSLTSCSWPPGMSCKAKKTKNLDLLQFRC-----------------
+--------
+>gi|27374944|emb|CAD59735.1| noggin-l [Suberites domuncula]
+-----------------------------SRAQSLDVQlTLLNILGADLNQGLQSITEMTGS---SPTVCTNETALEQSDEGLR--P-SDVPEFFQDRYF
+EEGFNNTAVYSIHsgdtRmAIRRTL-----NTLNCRVTYNWADAGVNFFPRYFSAGSCFE-RRCSIPDraDFLCRPDVfnqeqMGTLTALRWDCCwevve
+tivrgRRgrtfrrLSRRynCGWRRIRFPIVCDCDCNC
+>gi|340374294|ref|XP_003385673.1| PREDICTED: noggin-2-like [Amphimedon queenslandica]
+----------------------------------LDIALLYGHLGPDFDSTYTQLEDPTAMNPP------INPPIP--P---E---LVTLPRTMVNRTFF
+---P-DMVYNASEQF--TIRRWVGDQLGCKLEAGWVDLRQNFFPRWYAGRKCLpIRGNCSIPSgGQQCWPDLtdLDYVTMLAWDACyvpvGTTEaYTFGW
+RKVSVPIIRRCSCTC
+#
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+//
+�HHsearch 1.5
+NAME 5ce3a21f2652f5e4378c3552cceb2340
+FAM
+FILE 5ce3a21f2652f5e4378c3552cceb2340
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:28:08 2013
+LENG 139 match states, 139 columns in multiple alignment
+FILT 103 out of 548 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
+CCCEECEEECCEEEEEEECCCCEEEEEECCEEEEECCCC
+>ss_conf PSIPRED confidence values
+9887666777678877223110003566665556787445447988888788640676795486776402798541347886048999998864867686
+875614243167899993899699999389288640159
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCxrxxlxVdFxdlGWxxwIixPxxyxaxyCxGxCxxpxxxxxxxtnhaixxxlxxxxxxxxxx
+xpCCvPxxxxxlxilyxdxxxxixxxxlxxMvvxxCgCx
+>5ce3a21f2652f5e4378c3552cceb2340
+STGSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVP
+KPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH
+>gi|335280265|ref|XP_003353533.1| PREDICTED: bone morphogenetic protein 4-like [Sus scrofa]
+----------------------------------IEGLYIDGCYVEPKEEtgpigdGCNHfWIReeragAEEGRELLTIvslLGSDPLEPKPSGRAQKKS
+TL----------------------------------------------------
+>gi|73961483|ref|XP_854725.1| PREDICTED: similar to left-right determination, factor B preproprotein [Canis familiaris]
+----------------PRLELHTLDLGTYGAQgdcdpevpvTQAARCCRQEVYIDLRGMKWaENWVLEPPGFLAYECVGTCQQPPRPL-P-F-------E
+WPLLGPR-----QCVPSETTSLPMIITVKEGGrprPPVVSLPNMRVQKCSCS
+>gi|40556096|ref|NP_955181.1| CNPV157 TGF-beta-like protein [Canarypox virus]gi|40233921|gb|AAR83504.1| CNPV157 TGF-beta-like protein [Canarypox virus]
+----------------------------------DAICNIRSINIKFADYGM-KWILSPLSTVLTYCYGICSISS---YQKTSL-MYGTIITNHMPDNTI
+PQCCYPITRSNFTIRYKVGR-NIKTDVINNFMPLECACG
+>gi|162424750|gb|ABX90061.1| Tgf-beta [Amphimedon queenslandica]
+--------------------------------GDSEECSKSSLSIDKGQLAQilDIEIDFPETFDLNVCGGHCPGS---KYINQFHSKITYLLLATseve
+hlANKHHYSKTCVPTKYHSLNYIKFDQNGSV-IKTLDQFSVAECSC-
+>gi|291395261|ref|XP_002714159.1| PREDICTED: glial cell derived neurotrophic factor [Oryctolagus cuniculus]
+--------------------------------GKNRGCVLTAIHLNVTDLGLG--YETKEELIFRYCSGSCDAAE------TMyDKILKNLSKSrrLVSD
+KAGQACCRPIAFDDD-LSFLDD--NLVYHILRKHSAKRCGC-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+G 69 * * 6299 * * 37 * * * * * * * * * 6297 * * * * 69
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+ 180 * 3094 * * 2945 201 7163 0 2129
+
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+ 125 6356 3823 1000 1000 1586 584 7054 1000 2575
+
+S 77 3029 * 4759 4731 5529 3915 5251 * 4093 5126 5675 3763 3107 4537 5424 2934 2981 5127 * 4656 77
+ 366 4844 2400 3519 132 1615 570 7050 1108 2433
+
+Y 78 * 4839 5596 6408 4225 4063 2073 6375 4410 6067 5439 5096 4912 5414 3336 3523 5317 3299 * 3540 78
+ 131 5412 3979 649 1465 1762 504 6835 1030 2842
+
+M 79 5633 * 6159 * 3669 4371 * 4283 4240 2526 3489 4672 4854 5517 4849 4668 5003 3572 6319 2519 79
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+
+N 80 3907 5621 3948 6030 * 4259 4525 5541 3968 6543 * 1996 4140 4164 3569 3096 5043 * * 4427 80
+ 91 5216 4864 1033 968 1677 541 7113 1061 2371
+
+A 81 1758 * 3768 * 4465 4989 5382 6225 5912 5017 6414 3750 2994 4863 6387 3163 4890 4925 * 4908 81
+ 116 5517 4165 1448 659 1622 567 7108 1033 2165
+
+T 82 4735 * 4275 * 5302 6413 6554 5410 * * 4689 4099 3566 4232 5802 2977 1404 6281 * 3855 82
+ 120 6774 3818 1000 1000 2209 352 7188 1000 2072
+
+N 83 6123 7407 6426 * 4685 4408 5470 * 3058 4880 4722 1358 3814 5419 5538 3168 4679 6494 * * 83
+ 99 5822 4370 0 * 778 1263 7137 1007 2181
+
+H 84 4704 * 5135 6723 5555 * 770 5543 4648 5270 5247 5154 6988 * 5361 4463 5053 * * 3903 84
+ 74 * 4316 * * 3674 118 7326 0 1721
+
+A 85 1117 * 4931 6293 6225 * 6796 * 6132 4576 6413 6703 3805 6698 * 2641 3088 4856 * * 85
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+
+I 86 4649 * * * 3968 6612 * 1792 4959 2830 3899 5737 6552 4573 5497 5230 3566 3020 * 5082 86
+ 98 6225 4250 2487 284 2492 282 7339 1052 1885
+
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+ 102 5512 4423 1000 1000 2522 276 7211 1038 2007
+
+Q 88 6366 * * 7631 * 4081 4210 4939 3230 2823 4393 * 6207 1599 3702 4301 4556 * * 5158 88
+ 51 * 4835 * * 3973 95 7105 0 2053
+
+T 89 3320 * * 4553 4542 4808 6680 5706 4402 4344 6011 3222 6688 6651 4457 2131 2346 5834 * 5459 89
+ 67 * 4471 * * 1647 555 7069 0 2138
+
+L 90 4444 * * 6460 5038 * * 3479 4980 1111 3903 6391 7080 6210 3490 5253 5467 3663 * 6456 90
+ 76 4286 * 1060 943 796 1238 7121 1327 2025
+
+V 91 4374 5747 4958 5026 5760 6821 * 3795 5161 1714 3296 6820 6900 * 4957 4339 5080 2878 5094 4552 91
+ 64 * 4521 * * 1539 609 7192 0 1405
+
+H 92 3565 * * 6361 5554 6257 2094 6412 3633 4062 * 2754 4909 4047 3412 3967 3969 * * 5735 92
+ 223 6740 2900 639 1483 1016 985 7198 1040 1521
+
+F 93 3365 * 4869 3517 3741 3857 4805 4894 4072 3341 6601 3972 5364 3385 5461 4045 4940 4046 * 4660 93
+ 123 3921 5998 414 2002 1540 608 7140 1566 2026
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+I 94 4582 * * 4406 4647 5567 4566 2884 4064 2430 3384 6925 6166 4284 3791 6363 5594 3572 * 3868 94
+ 175 3721 4692 1605 575 1123 887 7204 1436 1762
+
+N 95 4018 5270 3572 4552 * 2981 6125 5384 4409 4726 6014 3178 5926 3548 3421 3504 4090 4513 * 5383 95
+ 234 3008 5296 1307 747 753 1299 7188 1678 1604
+
+P 96 3608 * 4549 3683 * 4896 6082 * 3913 3916 6574 4665 1611 5036 3672 3558 5734 5231 * * 96
+ 183 4077 4064 2064 394 930 1073 7291 1267 1352
+
+E 97 4196 * 2645 4410 6194 3085 4725 * 3604 4463 * 3018 5125 4895 3226 3986 5356 6659 5455 5117 97
+ 263 3999 3262 1569 593 355 2197 7194 1301 1563
+
+T 98 2698 * 3997 4515 * 3692 5195 6145 3498 3718 * 3250 6307 5038 4201 3323 3728 4294 5897 6573 98
+ 86 4870 5385 1357 714 1963 428 7003 1173 1833
+
+V 99 4085 * 5304 4033 6613 5069 4258 3106 6095 4812 6435 4799 * 4690 3368 3786 4119 1882 * 6442 99
+ 136 3653 6591 1370 706 1407 683 7180 1443 1742
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+ 14 6742 * 1000 1000 1029 971 7267 1000 1549
+
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+ 16 6532 * 2585 263 575 1606 7277 1000 1287
+
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+ 19 6286 * 0 * * * 7344 1181 0
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+ 13 6774 * 1000 1000 * * 7135 1000 0
+
+Q 108 3190 * 5190 3034 6086 * 5890 * 2330 6459 * 5056 6995 3656 2520 3048 4171 6829 * 5488 108
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+L 109 * 5823 * * 3338 * * * * 1842 2939 * * 5804 4276 5584 4251 * 6026 1663 109
+ 0 * * * * * * 7135 0 0
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+N 110 3832 * 3100 2877 * 3760 5292 4630 3388 5823 6845 5502 * 5530 3634 2188 4394 * * 5369 110
+ 0 * * * * * * 7135 0 0
+
+A 111 2917 * 3451 5166 * 4745 5421 * 7260 * 5113 5003 1929 5066 6814 1913 4516 * * 6580 111
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+I 112 * 6315 5353 7011 4768 6550 6927 2405 6444 1346 3053 * * 3991 * 6358 * 3306 * 6768 112
+ 99 6468 4177 1585 585 * * 7135 1003 0
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+S 113 6191 * 4211 4802 * 5664 5538 4990 4046 4201 * 3859 4044 5123 4704 1854 2443 4859 * 5850 113
+ 0 * * * * 0 * 7020 0 1253
+
+V 114 4632 5674 * * 3868 * * 1969 * 2583 2296 * * * * 6083 * 2342 * 4891 114
+ 18 * 6302 * * * * 7126 0 0
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+
+F 117 6479 * * 5575 2922 * 4719 4042 5372 2117 4051 5414 5488 5299 4353 5243 5743 3591 5236 2761 117
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+
+D 118 * * 1400 3867 * 5028 6194 5525 4647 4794 5020 2588 5641 4845 4755 4337 4736 4859 * * 118
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+ 47 * 4952 * * 0 * 6973 0 1016
+
+S 120 * * 2501 2965 5765 3821 5082 6388 3381 5805 * 2452 5759 4623 3591 3566 4589 * * * 120
+ 286 * 2475 0 * 814 1213 6965 1000 1122
+
+S 121 * * 4831 6050 * 1276 4699 6595 4076 6146 * 3065 * 5237 4183 3865 3608 6046 5998 4962 121
+ 115 5517 4188 1000 1000 371 2142 6711 1030 2029
+
+N 122 5579 * 3975 4006 5431 3326 6465 5783 3474 * * 2623 5254 3565 3895 3217 3172 4607 * 6503 122
+ 29 5632 * 1084 921 136 3475 6816 1118 1553
+
+V 123 4964 * * 6659 4735 * 6159 1738 6392 2475 5094 6416 4466 5433 6603 5625 5021 2366 * 4319 123
+ 28 * 5715 * * * 0 6893 0 1000
+
+I 124 5033 * 5555 3417 5368 5620 6130 3503 3262 4367 5456 6471 6567 3668 3707 4516 3690 2229 * 5613 124
+ 80 5537 4940 1585 585 0 * 6832 1087 1081
+
+L 125 6226 * * * 3622 5021 * 3026 4060 2572 4213 5701 * 6103 6279 5123 3002 2579 5330 3691 125
+ 44 5058 * 637 1485 580 1595 6860 1137 1109
+
+K 126 3973 * 4407 4223 * 4689 3783 5166 2300 6815 6211 6694 * 3478 2708 3352 3812 4343 * * 126
+ 44 5056 * 435 1942 * 0 6865 1132 1000
+
+K 127 6718 * 4342 3155 5257 * 4101 3931 3398 6348 6324 3663 4995 4812 3527 3688 2596 3746 * 6762 127
+ 13 * 6815 * * * 0 6865 0 1000
+
+Y 128 6294 * * * 3670 * 6646 2887 6451 1446 5789 * 5328 6950 * * * 3167 4888 2404 128
+ 28 * 5720 * * 0 * 6867 0 1038
+
+R 129 6672 * 3066 2894 * 6713 4061 * 4398 * * 3782 1727 4425 3526 3657 * 4960 * * 129
+ 0 * * * * * 0 6814 0 1029
+
+N 130 6672 * 1850 3552 * 3418 * * 3678 * * 1430 * 4020 * 6350 6532 * * * 130
+ 0 * * * * 0 * 6814 0 1029
+
+M 131 6656 * * * 3541 * 6056 3648 * 3106 749 * * 5733 * 4698 * 4607 * * 131
+ 0 * * * * * * 6867 0 0
+
+V 132 6793 * * 4743 * * * 2137 4312 4061 4604 * * 6487 3017 3014 4976 1813 * * 132
+ 28 * 5703 * * * * 6867 0 0
+
+V 133 1545 * * * * * * 3158 * * * * 4552 * * * 5122 1077 * * 133
+ 0 * * * * * 0 6867 0 1038
+
+R 134 3591 * 3833 2391 * 5650 * * 2374 2957 5906 5507 * 5561 3576 4336 3904 4197 * * 134
+ 0 * * * * * 0 6867 0 1038
+
+A 135 3498 * 4156 1550 * 4246 4584 * 2828 5578 * * * 6711 4762 2740 4021 * * * 135
+ 0 * * * * * 0 6869 0 1038
+
+C 136 * 0 * * * * * * * * * * * * * * * * * * 136
+ 0 * * * * * 0 6860 0 1038
+
+G 137 2943 * 5062 * * 932 5038 * 4762 * * * * * 6651 2416 4916 5783 * * 137
+ 0 * * * * * 0 6860 0 1038
+
+C 138 * 31 * * * 5541 * * * * * * * * * * * * * * 138
+ 38 5281 * 2663 248 0 * 6836 1108 1038
+
+H 139 4916 * * * * 3325 3308 5224 5415 5369 * 5523 5569 5545 1729 1715 5562 * * * 139
+ 0 * * 0 * * * 5894 0 0
+
+//
+�HHsearch 1.5
+NAME 5d895b2caff816955040ab755eaf5b19
+FAM
+FILE 5d895b2caff816955040ab755eaf5b19
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:01:04 2013
+LENG 167 match states, 167 columns in multiple alignment
+FILT 119 out of 452 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHH
+CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
+>ss_conf PSIPRED confidence values
+9600111688999875101489998736888666634677798589999886664188899999999999999863776657999978884103060221
+4563200243457778950899997389889999634899999999997532899479999257789
+>Consensus
+rPxxxyrxxxxxxYtrxxyxxgxpxxKixxfxxGxxxxxxxfxxxxxLxaxexxxixxxxiEAaRixxnrxlxkxxGxxxxkxxIrvfPxxxxtxkpxxx
+xagadrxexrMgxgkGkpxxwxArVxxGqvifeixxxxxxxakeALxxAxxKlPxxxkivxxxxxxx
+>5d895b2caff816955040ab755eaf5b19
+KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAA
+AAAAAAAADGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
+>gi|339758767|gb|EGQ44020.1| ribosomal protein L16/L10E [Candidatus Nanosalina sp. J07AB43]
+RPASIYREQPSQPYTRkaqnkrDNYVAGAPAPRVTQYEMGARNK--EFEQDVVLISEEDCSIRSEALESGRVAANSFLSKEFNmEEDYKLKIRPYPHHIL
+RYHPLAGIAQADRYYEGMRKPFGRPIGRAAIVDEGDVVFKVSIDSEnvQEARKALERTNHKMPVTCRVKLA-----
+>gi|242824789|ref|XP_002488329.1| 50S ribosomal protein L10e, putative [Talaromyces stipitatus ATCC 10500]gi|218713250|gb|EED12675.1| 50S ribosomal protein L10e, putative [Talaromyces stipitatus ATCC 10500]
+RPARCYHYCKNKPFPKSRFNRGVPDHKIRFFDTGRKKATVDdFPCCIHLVSSEYEQLSSEALEAALICANKYLVKTAGKESFHLRIRVHPYHTTRINKML
+SVAGADRLQTGMRGTWGKPVGKVARVNVDQILVSVRTTDRhrLVAIEALRRSMYKFPGRQKVIVSK----
+>gi|73997710|ref|XP_854316.1| PREDICTED: similar to ribosomal protein L10 [Canis familiaris]
+-----------------------------------------FGVCVHK---QTKIFKKEHLEKKSINTNSNVDHMEtNEDE--------IFDLSREKPLL
+AMYLVYFlTQLSIQGAFGKPQGTVARGHIGQVIMSICTKLQnkEHVIEALHRAKFKFPDCQKIHSSKK---
+>gi|25987151|gb|AAN75748.1|AF319171_3 ribosomal protein L16 [Magnolia x soulangeana]
+----------------------MLYPKRTKYSKYR-kgrcSRGrepdgtqLGFG-RYGTKSCRAGRLSYRAIEAARRAtigqfhraMSGQFRR-NG----
+KIWVRVLADLPITGKPT---------EVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQWS----
+>gi|328766533|gb|EGF76587.1| hypothetical protein BATDEDRAFT_7062 [Batrachochytrium dendrobatidis JAM81]
+---------------------------------------------YGLQLFEPGRLKDKQLDTVRTMVNRILKseK-----GSKLILRIFPHRPVTAKGA
+---------ETRMGKGKGAVEYYATWVSEGVVIMEITGARKDVALKALNVAAQALPLRTRVV-------
+>gi|10802927|gb|AAG23675.1|AF288091_20 ribosomal protein L16 [Thraustochytrium aureum]
+---------KNTSFTKS--Q-rkkrflvDLDSSKICSVNKL------TF-GSMGLMLLEDSFIQAKHFKIAYDFLKKNISK-RG----LFWILKFPDQSF
+TKKPLG---------SRIGKGKGNVAFWAIFVNKGNVFIEIESDSYQKSILLLKKLEKRFPFSGKII-------
+>gi|11466316|ref|NP_051144.1| ribosomal protein L16 [Cafeteria roenbergensis]gi|6180098|gb|AAF05795.1|AF193903_18 ribosomal protein L16 [Cafeteria roenbergensis]
+---------PRKKYKKNF-SKHLSFRKTTQNNGL------VY-GNIGLQVAEYGKISHLRLNALKKILTFSLQR-KG----KIWLRVYPMIPKTKKPLE-
+--------VRMGKGKGNLHYWETTIFPGEILFELTTVDSKIAVNGLKQVMKRLGLKSRII-------
+>gi|21450002|ref|NP_659264.1| ribosomal protein L16 [Laminaria digitata]gi|21425327|emb|CAC87960.1| ribosomal protein L16 [Laminaria digitata]
+---------KKTKYRKYFKPRGLPNTSTKTQKLA------EL-TCFALIAMESSYLNGRQIEAARQNIRRKVKR-EG----KLEILVFPDIAISRKASA-
+--------ARMGKGKGKVDHWIASVSAGQTMFLLYGIHAEQGIPALSSGANKLPLKVKIY-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+K 1 * * * * * * 3808 * 1751 * * * * * 663 * * * * * 1
+ 0 * * * * * * 3463 0 0
+
+P 2 * * * * * * * * * * * * 0 * * * * * * * 2
+ 0 * * 1297 754 * * 3463 1261 0
+
+G 3 853 * * * 4381 1649 * * * * * 4547 * * * * * * 4768 * 3
+ 0 * * * * * * 3707 0 0
+
+A 4 3697 * * * * * 4768 * 2681 * * * * 5074 1041 3007 * 5169 4006 * 4
+ 54 * 4768 * * * * 3707 0 0
+
+M 5 * 1035 * * * * * 3352 5274 * 2319 3282 * * * 4533 4583 * * * 5
+ 0 * * * * * 0 3655 0 1029
+
+Y 6 * * 4182 * 4157 * * * * * * * * * * * * * * 170 6
+ 0 * * * * * 0 3655 0 1029
+
+R 7 * * * * * * 4658 * 4533 * * * * 3968 509 5185 3023 * * * 7
+ 0 * * * * * 0 3655 0 1029
+
+N 8 * * 3769 2843 4347 5699 3347 * 3523 * * 3308 * * 2832 4583 * 4800 * 2220 8
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+
+S 9 * 2698 * * 2804 3914 * 2061 * 3381 * * 4724 4545 * 4532 5102 2760 * * 9
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+
+S 10 5618 * 3492 3324 * 5290 * * 1472 * 5530 4621 3659 * 4511 2793 3733 * * * 10
+ 0 * * * * * 0 4361 0 1029
+
+K 11 * * * * * 1963 * 5021 2008 * * 2088 * 4170 3322 4275 * 5530 * * 11
+ 0 * * * * * 0 4361 0 1029
+
+P 12 * * * * * * 5636 * 2004 * 4296 * 1603 3321 4468 4966 2528 * * * 12
+ 122 3993 5769 1728 518 * 0 4361 1172 1029
+
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+ 0 * * * * 1347 721 4369 0 1074
+
+Y 14 * * * * 2966 * * * * * * * * * * * 4916 * * 253 14
+ 0 * * * * * 0 4406 0 1029
+
+T 15 5061 5308 * * * * * * 2807 * * * 2512 * 4436 4999 970 4700 * * 15
+ 46 4999 * 1813 483 * 0 4406 1102 1029
+
+R 16 * * * * * * * * 1569 * * 4339 * * 777 * 5057 * * * 16
+ 44 5050 * 2703 240 0 * 4406 1095 1029
+
+R 17 * * 5164 * * * 5610 4894 1785 5419 * 4593 5296 * 2202 2214 * 5116 * 3724 17
+ 174 * 3139 * * * * 4474 0 0
+
+E 18 * * 3731 1332 3135 * 4299 * 3093 * * 3465 * * 3014 5004 * * * * 18
+ 84 * 4144 * * * 0 4233 0 1156
+
+Y 19 * * * * 2124 * * * 3948 * * * * * * * * * * 503 19
+ 0 * * 0 * 0 * 4074 1064 1236
+
+I 20 * 2593 * * * * * 1282 * * 3462 4096 4485 3139 * 4593 * 3750 * * 20
+ 72 * 4355 * * * * 4474 0 0
+
+S 21 4491 * 5948 * * 3121 3308 * 2432 * * * 4158 * 1216 4964 5671 * * * 21
+ 45 5036 * 3842 104 0 * 4511 1104 1045
+
+G 22 4577 * 3510 4981 * 580 4693 5284 4366 * 5222 * 5058 * * * * * * * 22
+ 0 * * * * * 0 4574 0 1018
+
+I 23 2436 5133 * * 5248 * * 3189 4203 3452 2482 5662 5398 * * * 4935 2001 * * 23
+ 27 * 5750 * * * 0 4909 0 1018
+
+P 24 * * 4750 * * 4441 * * 5544 2279 * * 642 5665 * 5107 * * * * 24
+ 0 * * * * * 0 4897 0 1063
+
+G 25 5406 * 2708 4769 5107 2840 5446 * 5238 * 6029 4608 4076 2332 5665 3191 * 5092 * 3382 25
+ 0 * * * * * 0 4897 0 1063
+
+K 26 3108 * * * * * 5510 4271 4319 6100 5520 * 1265 * 5155 2741 3379 4890 * * 26
+ 0 * * * * * 0 4920 0 1063
+
+K 27 * * * * 5529 * * 5520 517 5264 5561 * * 4780 3000 4354 * * * * 27
+ 28 5721 * 0 * * 0 4920 1000 1063
+
+I 28 * * * * * * * 807 5700 4734 * 5476 * * 2943 * 3584 2880 * * 28
+ 0 * * * * * 0 4907 0 1103
+
+A 29 3412 3136 * * 5476 * * 4748 3539 5449 * * 5695 * 2850 6024 1443 3598 * * 29
+ 0 * * * * * 0 4907 0 1103
+
+Q 30 * * * * 4499 * 3891 2828 1869 3989 5097 * * 2773 3814 4146 3558 5449 * * 30
+ 118 4313 5139 766 1280 * 0 4907 1045 1103
+
+F 31 * * * * 954 * * 5133 * * 4467 4388 * 5155 * 5547 * 4754 5795 1955 31
+ 32 * 5527 * * * 0 4885 0 1170
+
+D 32 * * 1734 3152 * * 3953 4832 3802 * 5952 2886 5738 4725 3694 4678 4484 4426 * * 32
+ 0 * * * * * 0 4854 0 1238
+
+M 33 4645 * * * * 4346 * 4310 1929 3969 1485 * * 5151 * 3912 4606 4612 * * 33
+ 0 * * 1000 1000 661 1443 4854 1029 1238
+
+G 34 5407 * * * * 482 * * 5331 3626 5891 * 5615 * 4932 * * * * 3565 34
+ 193 * 3001 * * 807 1223 4951 0 1063
+
+N 35 4358 * 3666 * * * 4034 * 5542 * * 1822 * 2876 2319 4910 3481 4389 * * 35
+ 322 2935 3849 1841 472 * 0 4719 1261 1357
+
+N 36 4159 * 5494 * 5703 * * 4799 1944 2955 4256 3836 3212 5009 3957 * 4820 4473 * 3800 36
+ 386 2089 * 1785 494 1132 879 4524 1591 1582
+
+G 37 3898 * 5856 5018 * 4483 4776 * 1699 5027 5896 3756 * 5119 3315 3328 3348 5848 5974 6189 37
+ 209 * 2887 * * 3652 120 4699 0 1333
+
+A 38 1646 * 5838 * * 3442 * * 3514 * 6093 4113 4185 4570 2165 4414 5200 5890 * * 38
+ 747 * 1306 * * * 0 4623 0 1671
+
+G 39 5272 * 4878 * * 1082 4496 * 2488 3455 * 4017 * * * 4306 4583 * * * 39
+ 781 1258 * 1784 495 3684 117 4123 1525 2527
+
+P 40 3605 4719 * * * * * 3190 4304 2348 4016 * 4111 4429 * * 4578 1666 * * 40
+ 155 3292 * 0 * 173 3145 4323 1117 2415
+
+T 41 3606 4535 2414 2347 * 4333 4440 * 4227 * 6160 3174 * 6042 5679 5404 3434 3925 * * 41
+ 441 2037 5671 723 1343 2108 381 4912 1767 1190
+
+Y 42 5884 * * * 654 * * * * 4264 * * * * * * * * 6192 1828 42
+ 134 * 3493 0 * 414 2003 4968 1029 1195
+
+P 43 * * 2935 2924 6031 1592 * * * * * * 1655 5682 * 6118 4680 * * * 43
+ 492 * 1792 * * 0 * 4875 0 1304
+
+A 44 5005 4173 * * 5854 2699 5341 3396 * 4211 4705 * 4690 4337 * 4208 3971 2342 * 2979 44
+ 0 * * * * 0 * 4729 0 1557
+
+Q 45 6548 2241 3582 2531 * * * 5426 3433 * * 4154 * 3336 3616 3338 4626 5095 * * 45
+ 0 * * * * * * 5091 0 0
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+//
+�HHsearch 1.5
+NAME 60dd783edaf524b39db3af7ecfd53a48
+FAM
+FILE 60dd783edaf524b39db3af7ecfd53a48
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:17:44 2013
+LENG 114 match states, 114 columns in multiple alignment
+FILT 132 out of 875 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCEEECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
+CCHHHEEECCEECC
+>ss_conf PSIPRED confidence values
+9899996378625589999999999999879594479999986986797898986699999998289999999999999999999969393649999998
+89999578779886
+>Consensus
+PxixixTNxxxxxxxxxxxxxlsxxiaxxlxkpexxixvxvxxxxxmxxggxxxpxxxvxixxxxgxxxxxxxxxxxxixxxlxxxlgvxxxrixIxfxx
+xxxxxwgxxGxtxx
+>60dd783edaf524b39db3af7ecfd53a48
+PMFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYD
+MNAANVGWNGSTFA
+>gi|225698066|pdb|3FWT|A Chain A, Crystal Structure Of Leishmania Major Mif2
+PFLQTIVSVSLDDQKrANLSAAYGMICr-EELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVFY
+YSTKHCGW--NGT---
+>gi|319935323|ref|ZP_08009761.1| hypothetical protein HMPREF9488_00592 [Coprobacillus sp. 29_1]gi|319809731|gb|EFW06132.1| hypothetical protein HMPREF9488_00592 [Coprobacillus sp. 29_1]
+PFMRFTTTKTLTLKQeKALKESAGKFISILPNKKEEQLMIHIEDNQVMYFKGKEMDCMKIECQLFHHIEISYKQEFVKAMMNEIEMITKIPVSHQYMTID
+EYD--NWGKNGELA-
+>gi|336255477|ref|YP_004598584.1| 4-oxalocrotonate tautomerase [Halopiger xanaduensis SH-6]gi|335339466|gb|AEH38705.1| 4-oxalocrotonate tautomerase [Halopiger xanaduensis SH-6]
+PLLQFDTTLSlSADEKEALADRVTAIYTEEMATTAGHVAVTIREhePAALHLGRaVEGPLCFLDAEIRQGRPFERKRAFALETMAYVGERFDVPDENMKV
+VFTEHPGESM--------
+>gi|312219511|emb|CBX99454.1| similar to MIF domain containing protein [Leptosphaeria maculans]
+---ELRTNVIIK-DEYTLVTDLSHHLSTRYQRPETSIMITVNHSACLLLGGSFEPTYILAINALPvQLQPTTNKRNAAMIQTFMAESIGVSPERGIIKFL
+PIPEDSLAMNGMTI-
+>gi|296136495|ref|YP_003643737.1| 4-oxalocrotonate tautomerase [Thiomonas intermedia K12]gi|295796617|gb|ADG31407.1| 4-oxalocrotonate tautomerase [Thiomonas intermedia K12]
+PFITLHLSGSPDPElSRDLSKRIGALACKLLRKDLRRTSVLVRYVphADWFIADQSlqelgRNAFRLEVTVTDETNTRdEKAIFQREAFQALSTWIGNVH
+PHSNIHVIDCRATAYGYGGVT--
+>gi|302876815|ref|YP_003845448.1| 4-oxalocrotonate tautomerase family enzyme [Clostridium cellulovorans 743B]gi|307687498|ref|ZP_07629944.1| 4-oxalocrotonate tautomerase family enzyme [Clostridium cellulovorans 743B]gi|302579672|gb|ADL53684.1| 4-oxalocrotonate tautomerase family enzyme [Clostridium cellulovorans 743B]
+PYINVKLVKeQTSLEqQKKIIEGLTDLVVTVMGREKSLTVITLDELsaNQWSIGGETleqsadkKAVSFVNIKVSKGTTDAeEISKMMKATKELLAEVLG
+NNEEANYFILDELNPDAWGFDGisMT--
+>gi|315303670|ref|ZP_07874195.1| 4-oxalocrotonate tautomerase [Listeria ivanovii FSL F6-596]gi|313627960|gb|EFR96568.1| 4-oxalocrotonate tautomerase [Listeria ivanovii FSL F6-596]
+---------------ENINRAIHNALIECFQIPENDSFQLWvsTDATANfvdaHYllPTgkRNNEFLYLEIFCGPGRSIEQKRSLYQTIVAQMEQATSLS
+KQNIFILLNEVSLENWSFGDG---
+>gi|293606869|ref|ZP_06689217.1| 4-oxalocrotonate tautomerase [Achromobacter piechaudii ATCC 43553]gi|292814721|gb|EFF73854.1| 4-oxalocrotonate tautomerase [Achromobacter piechaudii ATCC 43553]
+PILNVQILQGHSAAQkAALLRAASDAVVQSIAAPLPSVRIVLqeVPAENVIVAGEIGkRMVRVDVALIEGRDEAKKAALIAALNQAVCSSIDISGEDVRV
+LIRDVPKVDMGVANG---
+>gi|338811969|ref|ZP_08624168.1| 4-oxalocrotonate tautomerase [Acetonema longum DSM 6540]gi|337275938|gb|EGO64376.1| 4-oxalocrotonate tautomerase [Acetonema longum DSM 6540]
+--------------------------------------------------------------------QAQKDEISQTFTREISRILKGDHGPVTVEFNE
+IPRPEADSKQTP--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+P 1 * * * * * * * * * * * * 30 * * 5619 * * * * 1
+ 30 * 5619 * * * * 7763 0 0
+
+M 2 6639 3370 * 6240 2153 * 5038 3355 6260 2941 5548 6442 * * 6346 * 4293 3306 * 2423 2
+ 0 * * * * 0 * 7845 0 1084
+
+F 3 3638 3881 * * 4723 * * 1606 * 1706 5743 * * * * * * 2820 * 5735 3
+ 0 * * * * * * 7907 0 0
+
+I 4 6121 * 5348 2649 6117 * 6522 4394 3964 6220 4640 4061 * 2677 2836 3707 2891 5038 * 6258 4
+ 0 * * * * * * 8093 0 0
+
+V 5 5126 6326 * * 3560 * * 1906 * 1767 5209 * * * * * 4572 2032 * * 5
+ 0 * * * * * * 8126 0 0
+
+N 6 4804 * 3209 3428 4053 * 4043 4968 2619 6671 * 5293 * 3420 4680 4107 2525 5517 * 5258 6
+ 0 * * * * * * 8126 0 0
+
+T 7 5827 6446 * * * * * 5090 * 3370 * * * * * 4096 539 3348 * * 7
+ 0 * * * * * * 8126 0 0
+
+N 8 4450 * * * * 6382 * * 5554 * * 455 6446 * * 3458 3743 6111 * * 8
+ 0 * * * * * * 8126 0 0
+
+V 9 4736 5973 5395 4684 5236 5963 6279 4233 4103 2155 6159 * * 4455 5847 4802 5324 1495 * * 9
+ 87 4362 6682 256 2623 * * 8126 1398 0
+
+P 10 3740 * 4106 5890 6558 5817 5387 4811 2831 6624 * 3560 2430 3941 4733 2343 5014 6571 * * 10
+ 340 2348 6232 103 3855 0 * 8133 2937 1000
+
+R 11 2528 * 4589 4154 6290 * 6464 3544 3643 3157 4834 5410 4054 6686 5651 2994 3477 5059 * 4913 11
+ 35 * 5372 * * * 0 8073 0 1029
+
+A 12 3610 6110 2309 4678 * 4580 * 6709 4888 5264 * 3349 6362 5786 6633 2085 2790 5543 * 6446 12
+ 16 * 6503 * * 1823 479 8052 0 1285
+
+S 13 3095 * 2430 3509 * 5461 6107 * 3172 4095 * * 4027 3332 4603 3299 7017 3650 * 6392 13
+ 29 * 5646 * * 0 * 8058 0 1291
+
+V 14 3916 6444 2805 2274 4121 6364 6079 3509 4053 4251 * 5218 * 4361 5785 * 6381 2460 * * 14
+ 213 3140 5391 0 * 0 * 8103 2018 1099
+
+P 15 3768 * 4824 4259 * 4942 * * 2616 * 4541 4868 2205 2972 5584 2921 4607 5155 * * 15
+ 362 2173 * 0 * 0 * 8170 3155 1134
+
+E 16 3462 * 2864 2351 6504 * * 5255 2363 6091 * 4649 * 3759 4067 3660 5526 4858 * 5578 16
+ 0 * * * * * * 8778 0 0
+
+G 17 2692 * 3016 3209 * 2967 5429 5038 3157 6768 * 3840 6643 4471 4521 3562 4364 6817 * * 17
+ 0 * * * * * * 8778 0 0
+
+F 18 4961 6694 * * 1494 * * 3243 * 1335 * * * * * * 6911 3662 6186 * 18
+ 0 * * * * * * 8778 0 0
+
+L 19 2372 5289 6524 4017 5060 6998 4464 3864 3624 2152 4247 5598 7046 5750 5138 5211 5832 3871 * 6643 19
+ 0 * * * * * * 8778 0 0
+
+S 20 3420 * 3705 2944 * 5323 6422 6515 2330 3864 7029 6272 6998 4651 4201 3059 3385 4422 * * 20
+ 0 * * * * * * 8778 0 0
+
+E 21 3575 5624 3180 2037 * 3693 * 5870 3174 * * 4694 * 4680 3536 4130 4434 4612 5138 * 21
+ 0 * * * * * * 8778 0 0
+
+L 22 3707 6821 * * 3594 * * 2490 * 1498 4506 * * * * 4544 3759 3076 * 5624 22
+ 0 * * * * * * 8837 0 0
+
+T 23 3881 4038 6464 5171 6578 3405 4204 5599 6352 * 6453 5637 * 5449 6518 1557 2457 5179 * 5299 23
+ 28 * 5691 * * * * 8837 0 0
+
+Q 24 3163 6277 3378 2869 5819 5779 4045 6956 2713 5505 * 4032 * 3136 4458 3518 5491 6697 * 5391 24
+ 0 * * * * 0 * 8753 0 1147
+
+Q 25 1801 4757 * 5775 3519 6296 5782 3698 5258 2154 6790 6535 * 7231 5851 4907 4214 3629 * * 25
+ 0 * * * * * * 8837 0 0
+
+L 26 3735 6721 * * 4264 * * 2093 * 2009 3939 * * * * * 4008 2224 * 4671 26
+ 16 6518 * 0 * * * 8837 1041 0
+
+A 27 1504 3760 * 6452 * 4743 6644 4447 6336 * 6438 6718 6578 6226 4351 1905 5112 4284 * 6000 27
+ 0 * * * * 0 * 8825 0 1041
+
+Q 28 4335 * 3115 1941 6395 6466 6528 5480 2757 4568 6582 4582 * 3697 5122 3329 4112 6296 * * 28
+ 0 * * * * * * 8837 0 0
+
+A 29 3118 6374 5676 4537 6469 * 5088 2940 5089 2735 4662 6159 * 7184 5119 4072 3632 2118 * * 29
+ 0 * * * * * * 8837 0 0
+
+T 30 6011 * * * 3558 * * 4482 * 1112 2730 * 3591 * * 6960 3731 5129 6634 4777 30
+ 0 * * * * * * 8837 0 0
+
+G 31 3917 6846 3414 4753 * 1332 6747 * 3537 * * 3038 6159 3360 4868 5285 6870 * * * 31
+ 0 * * * * * * 8837 0 0
+
+K 32 4499 6304 6159 * 5637 * * 5302 706 5680 5635 6915 * * 3379 6452 4606 3995 * 6450 32
+ 0 * * * * * * 8837 0 0
+
+P 33 6846 * 3177 4598 * 6216 * * 4938 * 6233 5459 787 * 5667 3038 4788 * * * 33
+ 0 * * * * * * 8837 0 0
+
+A 34 4157 * 5707 1319 * 6582 * 3887 3340 3921 4677 6159 3762 3981 6040 5339 6216 4734 * * 34
+ 0 * * * * * * 8837 0 0
+
+Q 35 3346 * 2385 3050 * 4969 6738 5273 3923 6892 6129 3117 4822 5511 3789 2856 4589 * 6790 * 35
+ 16 * 6496 * * * * 8837 0 0
+
+Y 36 4334 6655 3542 5733 4488 5525 4502 6447 3477 3769 * 5510 * 5367 2716 4303 * 4204 4667 2265 36
+ 0 * * * * * 0 8812 0 1034
+
+I 37 5448 4569 * * 5490 * * 1777 6462 3156 3776 * * 5556 4048 5513 3985 1957 * * 37
+ 0 * * * * * 0 8829 0 1034
+
+A 38 3319 4030 * 6256 4237 * 6252 4863 * 5170 1585 5652 * 5867 4866 3746 3362 3489 6452 5615 38
+ 0 * * * * * 0 8829 0 1034
+
+V 39 4079 6743 * * * 6648 4708 2901 * 4493 4566 6139 * 4483 * 5052 3903 980 * * 39
+ 54 4766 * 1585 585 * 0 8829 1315 1034
+
+H 40 4015 7330 6347 4217 6932 4514 3703 4936 5982 3770 4020 4295 6743 4315 3349 3198 2594 3827 * * 40
+ 0 * * * * 0 * 8829 0 1034
+
+V 41 5690 * * * 3304 6680 * 1999 * 2136 6467 * * * * 6713 * 1827 5152 4032 41
+ 164 3318 7154 1000 1000 * * 8854 2197 0
+
+V 42 4984 6590 3201 2699 * * 4043 4411 4334 3843 7066 4057 6569 3875 3147 4077 4061 3665 * 6473 42
+ 72 4743 6489 1000 1000 0 * 8857 1382 1000
+
+P 43 4373 6379 2207 3060 * 3765 4823 * 7059 5638 * * 2620 6078 5230 4239 3228 4996 * 3802 43
+ 62 4561 * 1000 1000 0 * 8831 1478 1045
+
+D 44 3766 6363 2636 3211 * 2393 5558 6302 7154 6518 * 2849 4249 4544 4991 3342 5667 5700 * * 44
+ 135 3883 5529 1000 1000 * * 8854 1762 0
+
+Q 45 3147 4852 4348 3229 * 4512 5219 5056 3651 3626 5787 5035 5171 2868 4670 4987 4320 3484 * 6400 45
+ 127 * 3573 * * 0 * 8770 0 1173
+
+L 46 3581 4651 2758 5114 6683 5467 3040 5104 5019 5849 5719 4219 3435 3908 3335 4348 4575 6055 6595 5535 46
+ 0 * * * * 0 * 8664 0 1943
+
+M 47 5542 6358 * * 3796 6458 * 2741 * 2238 1503 6376 * * * * 6866 4453 3635 5518 47
+ 134 4119 5009 1441 663 * * 8854 1618 0
+
+T 48 4128 4040 5544 * 3236 4866 4414 4893 * 3157 5181 * * * 4362 3604 2938 3776 4699 2976 48
+ 17 * 6435 * * * 0 8755 0 1449
+
+F 49 5367 * * * 1638 * 5033 3041 6529 3509 4232 6450 5299 * 2814 5694 6467 4485 4919 3984 49
+ 27 5758 * 1218 811 0 * 8730 1100 1607
+
+S 50 2816 5745 5997 7458 6533 1076 6401 5781 6125 * 5184 5114 3568 4307 5023 4806 6475 * * 5675 50
+ 39 5907 6636 0 * * * 8854 1095 0
+
+G 51 3570 * 4651 5436 4928 722 * * 6710 4218 * 4813 5549 * 4202 6341 5219 * * * 51
+ 194 3118 6560 930 1073 0 * 8839 2344 1012
+
+T 52 7012 * 4246 3284 * 6835 6554 * 3947 5109 * 4138 6211 4686 2916 1859 2532 4903 * * 52
+ 114 4050 5984 981 1020 0 * 8834 1857 1020
+
+N 53 4606 6437 2934 3178 4003 4769 5129 6447 5026 5586 6971 3987 2869 5663 5638 3277 2701 6533 * * 53
+ 160 3251 * 2495 282 0 * 8849 2165 1087
+
+D 54 3329 * 2181 2121 * 3918 * * 4309 3931 6125 5070 5550 5242 3872 5287 4322 4959 * * 54
+ 116 3695 * 405 2031 * * 8854 1999 0
+
+P 55 4003 * 3763 4045 6255 5225 6651 * 4262 4583 * 4060 958 6842 6309 5690 4866 * * 6615 55
+ 0 * * * * * * 8854 0 0
+
+C 56 2261 2643 * * 4730 4307 5669 7150 6510 3985 3922 6972 * 5765 5125 3759 4006 3368 5565 3896 56
+ 0 * * * * * * 8807 0 0
+
+A 57 1550 3313 * * 4222 4357 * 4259 * 4344 4976 * 4110 * * 5746 3712 2997 * 4498 57
+ 0 * * * * * * 8807 0 0
+
+L 58 * 5610 * 6595 2333 6829 4999 3058 6138 3590 3710 * * 4248 4886 5801 5548 3247 5642 2428 58
+ 0 * * * * * * 9006 0 0
+
+C 59 4354 4703 * * 4563 5126 * 2110 * 2376 3481 * * * * 6478 * 1781 * 5284 59
+ 0 * * * * * * 9006 0 0
+
+S 60 6943 6988 3613 1862 5916 * 3574 6604 4724 7145 5611 3462 * 4390 3563 3412 3141 5593 * * 60
+ 0 * * * * * * 9005 0 0
+
+L 61 4862 5029 * * 4609 * * 1529 * 2170 6518 * * 6264 * * 6799 1814 * 6960 61
+ 0 * * * * * * 9005 0 0
+
+H 62 4707 5840 4438 3506 4836 * 5109 5234 2524 7025 5495 3889 * 4038 3668 3850 2758 3795 * 5676 62
+ 9 7257 * 0 * * * 9005 1000 0
+
+S 63 2987 4471 * * 4903 5295 7242 3161 6978 2895 3649 5340 * 6953 5781 2077 5004 3577 6041 6478 63
+ 11 * 7047 * * * * 9005 0 0
+
+I 64 4339 * * * 3593 6189 7252 1860 6890 3031 3691 6988 6473 * 4323 4383 3346 3460 5938 4605 64
+ 80 * 4211 * * 0 * 9002 0 1084
+
+G 65 3547 6590 4536 3093 6207 1357 6078 * 4604 * * 4651 3703 5208 4711 4899 5078 5067 * 6789 65
+ 130 3805 6070 336 2266 816 1211 8993 2075 1749
+
+K 66 4699 * 6599 5299 * 1076 5500 5762 4205 5063 5969 3836 5404 4761 5220 4982 5596 3418 7069 * 66
+ 48 5366 6875 0 * 616 1525 9015 1223 1484
+
+I 67 7345 * 6101 6007 3497 5921 6630 3533 6170 2233 4176 6814 4856 * 2071 5103 3322 4084 * 6528 67
+ 25 5889 * 0 * 769 1276 9018 1120 1237
+
+G 68 4719 * 2964 6143 * 2658 5733 * 4289 7092 * 3175 3408 5758 5827 2472 2619 * * * 68
+ 11 7092 * 0 * * 0 9008 1000 1022
+
+G 69 4067 * 3466 3829 6596 5578 5320 3992 3839 4045 5866 5592 2336 4710 3769 4342 3782 4505 * 5927 69
+ 30 5609 * 0 * 0 * 9028 1221 1022
+
+A 70 3180 * 3256 1557 6124 4957 6979 6008 4287 5683 * 5360 6810 4588 4377 3193 3989 6755 * * 70
+ 188 3129 7000 133 3504 * * 9038 2543 0
+
+Q 71 3499 6642 4386 2717 * 4773 6020 * 4458 3494 7089 4341 7296 2125 4269 5470 3706 4355 * 5424 71
+ 29 6486 6829 2322 322 * 0 9039 1045 1000
+
+N 72 7275 4984 6906 * 5912 * * 4945 1777 4688 6471 1842 4499 5388 3744 5351 4054 5021 7278 5713 72
+ 50 4870 * 1386 696 0 * 9034 1520 1143
+
+R 73 3911 6115 5346 2870 * 5504 5753 6257 2263 4928 5636 5617 4607 3382 2569 4038 5647 5261 * 6655 73
+ 0 * * * * * * 9038 0 0
+
+N 74 2475 7095 4305 2625 * 5286 7184 5192 2369 5435 * 5256 * 3525 2919 4831 5054 6255 * * 74
+ 0 * * * * * * 9038 0 0
+
+Y 75 5220 6708 * * 2669 6267 3607 3466 6651 1742 3831 5285 * * 5391 * 6070 4272 5721 3231 75
+ 0 * * * * * * 9038 0 0
+
+S 76 2194 5966 5929 * 6074 4439 * 3160 6676 5235 5678 5740 * 6346 * 2124 2992 3492 * 4460 76
+ 19 * 6267 * * * * 9038 0 0
+
+K 77 2198 * 3980 3399 * 5079 7010 5730 1903 4640 * * 6923 3471 4668 4131 4711 5199 * * 77
+ 0 * * * * * 0 8981 0 1034
+
+L 78 1975 * 4393 2740 5578 4086 5866 5022 2903 4256 5362 5118 6395 4773 4315 6983 4173 5686 * * 78
+ 0 * * * * * 0 8981 0 1034
+
+L 79 4869 * * * 3161 * * 1395 * 2096 4123 * * * * 6687 5638 2798 * 6845 79
+ 0 * * * * 0 * 8981 0 1034
+
+C 80 4425 3157 * 6422 3080 5776 5929 5570 5989 4922 4117 6039 * 4543 7217 3858 1649 4712 * 4092 80
+ 0 * * * * * * 9038 0 0
+
+G 81 2865 7002 2419 2204 * 5795 5978 * 3390 * 6731 4774 4984 4081 3877 3720 4605 * * * 81
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+
+L 82 2843 6547 7174 4189 2511 6540 5284 3601 5362 2540 6564 5918 6714 7206 4773 5398 4027 3977 7127 4010 82
+ 11 * 7014 * * * * 8862 0 0
+
+L 83 4197 5385 * * 3568 6910 * 2354 * 1569 3345 * * * * 6061 4874 2914 * 5953 83
+ 20 6151 * 1585 585 0 * 8860 1146 1045
+
+S 84 2782 6035 5968 2483 * 5112 3900 5829 4461 5574 5338 4732 * 3473 4676 3572 3542 3835 * 4915 84
+ 0 * * * * * * 8862 0 0
+
+D 85 4127 * 4311 1754 * 5431 * * 2698 6965 6187 5112 5514 3178 3213 4806 3622 6540 * * 85
+ 0 * * * * * * 8862 0 0
+
+R 86 3667 * 5330 2465 6697 * 3545 3516 3472 4382 * 4079 7014 4422 5475 6231 3306 3150 6371 5695 86
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+
+L 87 4601 5986 * * 4017 * * 4147 * 698 5269 * 4936 * 6867 6154 3566 6163 6778 5678 87
+ 0 * * * * 0 * 8868 0 1000
+
+H 88 3832 * 4985 4988 * 937 4907 * 2974 6023 * 4085 5942 6069 5661 4747 6885 6291 * * 88
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+
+I 89 5279 4700 * * 7127 5773 * 1773 4402 2909 6929 5145 5940 * * 6281 5552 1593 * 5733 89
+ 0 * * * * * * 8862 0 0
+
+S 90 4283 * 3334 4159 * 4640 5748 6540 4110 5072 * 5905 1423 4704 5277 3152 4395 5469 * * 90
+ 45 5804 6291 0 * * * 8862 1170 0
+
+P 91 3243 * 6614 4432 * 3851 4908 5736 2751 4938 7034 5496 1835 3803 4912 3602 6887 5555 * 6924 91
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+
+D 92 4232 6689 1979 1975 * 4327 6514 7093 7264 6577 7222 4062 4994 4613 7575 3189 4106 5676 * 6302 92
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+
+R 93 4529 * 3935 5260 * 6828 4271 * 4769 5945 * 3382 6621 4535 1159 3562 5510 5041 * 5825 93
+ 0 * * * * 0 * 8809 0 1034
+
+V 94 6959 4654 * * 4056 4106 * 1607 * 3994 4149 6722 * 5662 * 4439 4226 1955 * * 94
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+
+Y 95 * * 5601 4946 3218 * 7054 3527 5596 3815 5146 4727 * 7150 3902 6072 3679 3645 7120 1585 95
+ 0 * * * * * * 8862 0 0
+
+I 96 7026 6897 * * 4536 5961 * 1147 * 3589 4023 * * * * * 4917 1759 * * 96
+ 0 * * * * * * 8888 0 0
+
+N 97 4807 7324 6568 3906 5579 6813 4178 3795 3686 3103 6125 3751 * 4186 3869 4142 3308 2945 * 5049 97
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+
+Y 98 6734 6253 * * 1202 * * 2487 * 3001 5345 * * * * * * 3582 * 2928 98
+ 0 * * * * 0 * 8870 0 1003
+
+Y 99 5942 * 3495 3444 4096 * 3419 4488 4648 4374 * 3678 * 3718 4208 4565 2988 3803 * 3830 99
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+
+D 100 4221 * 2093 1508 6810 6072 6563 6584 * * * 3958 3139 5108 5560 4982 5582 5220 * 6927 100
+ 0 * * * * * * 8888 0 0
+
+M 101 3847 4848 * 5762 5948 * 4394 2614 6260 2697 3541 4711 4610 5025 5803 4913 5463 2425 * 5202 101
+ 0 * * * * * * 8853 0 0
+
+N 102 4425 * 3100 2702 * 5536 5763 6710 4162 5872 * 3779 2110 4347 4713 3162 4640 * * 5875 102
+ 135 * 3488 * * * * 8802 0 0
+
+A 103 2444 * 5762 4443 * 3809 6463 * 3989 4064 5484 * 2103 5828 3215 3431 4298 * * 5481 103
+ 0 * * * * * 0 8401 0 2215
+
+A 104 3634 5289 3148 2341 * 5261 3283 5312 4609 5320 * 6670 5619 3767 * 3404 3662 7007 4722 4612 104
+ 21 6085 * 0 * 0 * 8401 1045 2215
+
+N 105 3727 6984 2696 4747 5504 5219 3241 6683 * 4820 4519 1827 6505 3843 5551 3742 6721 6202 * * 105
+ 16 * 6490 * * * * 8574 0 0
+
+V 106 6319 5522 * * 3403 * * 3096 6591 4757 4262 * * * 5951 * 5579 3265 1101 4398 106
+ 26 7154 6565 0 * * 0 8538 1000 1040
+
+G 107 2123 * 6307 * 5715 733 6315 * * 6344 5710 * * 6147 6074 4177 * * * 6787 107
+ 0 * * * * * 0 8471 0 1210
+
+W 108 6778 * * 5802 2315 6984 5720 2712 3334 5150 4891 5094 * * 6600 5071 3667 3584 3487 3174 108
+ 0 * * * * 0 * 8463 0 1210
+
+N 109 4149 * 3386 5740 * 1949 6602 6105 3563 5145 * 1908 6684 4664 4146 4437 * * 6121 * 109
+ 11 * 7012 * * * * 8406 0 0
+
+G 110 * 6062 4479 5522 * 288 5075 * * * * * 6363 6277 5410 6957 * * * 6267 110
+ 38 6378 6151 1000 1000 0 * 8364 1027 1023
+
+S 111 4944 * 6833 4247 6610 2958 5225 5908 2737 6989 4351 * 6249 6021 3686 2818 2498 3693 * 6119 111
+ 19 6249 * 0 * 0 * 8334 1020 1059
+
+T 112 6485 * * * 5287 * 5761 5480 5989 2426 * 4949 5335 * 6860 4544 839 4653 * 6259 112
+ 0 * * * * * * 7954 0 0
+
+F 113 3755 * * * 1472 * 4486 2920 5052 2447 4565 4860 * * * 5514 * 4493 6210 5742 113
+ 205 2918 * 2071 392 * * 7452 1402 0
+
+A 114 1573 * 4292 3511 * 1938 3926 * 3342 * * * 4998 * * 3868 * * * * 114
+ 0 * * 0 * * * 5846 0 0
+
+//
+�HHsearch 1.5
+NAME 61affadfde1fab540b7313adbf4ebfda
+FAM
+FILE 61affadfde1fab540b7313adbf4ebfda
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:03:26 2013
+LENG 231 match states, 231 columns in multiple alignment
+FILT 155 out of 321 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
+HCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHCCCCEEEEECCCCCCEEEEECCCCCCEEEECCCCCCCEEECCEEEEEEEECCCCCCCC
+CCCCEEEEEEECCCCCCEEEEECCCHHCCCC
+>ss_conf PSIPRED confidence values
+9958802478765374699977661688779986788743003757146682520786688664898663789868999983377676640289999976
+3026412999999980573446899999699999988978960671899997899738999603177025761379885064457999998287588999
+9995799999823899189834492311579
+>Consensus
+xxxpxxxxpgsxxfxttxxxxsxxxxxxxxxxxxxxxpgxvxnxlxiaxvxsxxxxxxxxxxxxfxxxxxxxxxxxLxxxxvxPxxxxxxxTxlxxlsxx
+fxxWrGslxxxfxfxgsxxxxGklliayxPpgxxxpxtxxxamxxxhvixDlgxxsxxxfxVPxisxtxxxxxxxxxxxxxxxxGxlxvxvxtxLvxpxx
+xxxtvxixvxxsagxDFxxxxpxxpxxxxxx
+>61affadfde1fab540b7313adbf4ebfda
+SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQIPTFIGNKMPNAVPYIEASNTAVKTQPLAVYQVTLSCSCLANTFLAALSRN
+FAQYRGSLVYTFVFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDQANITNVDGWVTVWQLTPLTYPPG
+CPTSAKILTMVSAGKDFSLKMPISPAPWSPQ
+>gi|3002544|gb|AAC12265.1| polyprotein [Clethrionomys glareolus picornavirus]
+---DIAEGPGAlniANVLSTTGGQTVALVGEraFYDPRTAGAAVRCKDLMEIARMPSVYKgERTePGGtNGYF-QWSHTHsPINWVFDGGIHLEDMPN--
+--LNLFSSCYNYWRGSTVLKLTVYASTFNKGRLRMAFFPNHDARY-TEEEAQNAIFMVCDIGLNNTFEMTIPYTWGNWMRPTRGS------VIGWLRIDV
+LNRLTYNSSSPNAVNCILQVKMGNDAKFMVPTTSN-----
+>gi|237769644|dbj|BAH59290.1| capsid protein VP1 [Human echovirus 24]
+----------------------------------------------------------------------------------------------------
+-------------------------------------------------------------------CFVRALDKPDALqVCCRRRLHGCWIcnllvSNK
+VVAPADAQSACYILGFVSACNDFSVRLLKDTPFISQQ
+>gi|38224698|gb|AAR14150.1| polyprotein [Maize chlorotic dwarf virus]
+--------------------------------------------------------------------------TNLMELNIHPTscaiqNGLITQTPLS
+VLAHAFARWRGSLKISIIFGASLFTRGRILAAAVPVAKRKgTMSLDE-ISGYHNvCCLLnGQQTTFELEIPYYSVGQDSFVYRDALFDISAhdgnfmITR
+LHLVILDKLVMSANASSSINFSVTLGPGSDLELKYLAG-------
+>gi|72170202|gb|AAZ66774.1| capsid protein [Norwalk virus]
+------------------------------------------------IIDPWIMNNfVQAPGGEFTVSPRNSPGEVLLNLELGPEINPY----LAHLAR
+MYNGYAGGFEVQVVLAGNAFTAGKVIFAAIPPNFPiDNLSAAQITMCPHVIVDVRQLEPINLPMPDVRNNFFHYNQGSD-----SRLRLIAMLYTPLRAN
+NSgdDVFTVSCRVLTRPSPDFSFNFLVPP------
+>gi|336391070|dbj|BAK40204.1| putative structural protein [Chaetoceros sp. RNA virus 2]
+-----------------------------IDTRVMGLGGEDElAISAIAQRPSFWQ--------QFDWAESATTDTLLASMVVTPALvrtltaspvTEVH
+PTALCFASNPFGAWQGSIKFRFNIVCSEYHRGRLRIVYNPRSNnSGPVAYN---QVYSTTIDISEDRDFEYEVKWADIRAWNVLlGADaaplfptfstva
+nvTAGEAFDNGSLSVYVVNELATPSNTNAAVKVQVWVSGGEDIAFAVPTVN------
+>gi|9632406|ref|NP_049374.1| polyprotein [Sacbrood virus]gi|4416207|gb|AAD20260.1| polyprotein [sacbrood virus]
+------------------------------------YPDEPRTTLDIARIWGLRS--------TF-NWGSGDdHGKELFNTVLDPGLrfydqdYEGQITP
+MEYVTGLYNFWSGPIELRFDFVSNAFHTGTVIISAEYNRS--STNTDECQsHSTYTkTFHLGEQKSVHFTVPYIYDTVVRRNTASAYLpvtdydkvdnvs
+RAQAMGiraeskmRVKVRVVNVLRPVASTTSTIEVLVYMRGGKNYALHGLKQST-----
+>gi|185871627|gb|ACC78151.1| structural protein VP0 [Duck hepatitis A virus]gi|189007748|gb|ACD68184.1| VP0 [Duck hepatitis A virus]
+----------------------------------------------------------------------------------------------YGQTRY
+FRFIRCGFHFRLLVNAPSGSAGALMLVWMPypycrvlSGANqihTNVERRSLMNLPYAILDLRTNTEIDLVVPYVNYRNYVEItTSDT-----TGGAICV
+IVLGKYRHGNGTSNTVDFTLFGEL-LETDLQCPRPFD-----
+>gi|297615108|gb|ADI48872.1| coat protein [Taura syndrome virus]
+-------------------GVPLSLFPNNAIDPTIAVPEGLDEMSieYLAQRPYMLN--------RY-TIRGGDtpdaHGTIIADIPVSPVNFSLYgkvi
+akyRTLfaapVSLAVAMANWWRGNINLNLRFAKTQYHQCRLLVQYLPYGSGvQPI---ESILSQ--IIDISQvdDKGIDIAFPSVYPNKWMRVYDPAKVG
+YTadcAPGRIVISVLNPLISASTVSSNIVMYPWV--------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+P 230 * * * 5387 4663 * * * * 5169 * 4897 3214 382 * * * * * * 230
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+Q 231 4007 * * 4037 * 2428 2737 * 2786 * * * * 1591 * 3965 * * * * 231
+ 0 * * 0 * * * 2919 0 0
+
+//
+�HHsearch 1.5
+NAME 61e58fd4d97efb70b78410488ce6cac8
+FAM
+FILE 61e58fd4d97efb70b78410488ce6cac8
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:20:36 2013
+LENG 179 match states, 179 columns in multiple alignment
+FILT 109 out of 1185 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
+CCCCEEEEEECCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9747999997988888069999999999999963878848999997893369864776677899999998754158987599999999999865540578
+8996299998579989970569888988999997886434248999999966999854998099999999999999619
+>Consensus
+xxxdivfllDxSxSmxxxxxxxxxxxxxxxxxxlxxxxxxvxivxfxxxxxxxxxxxxxxxxxxxxxxixxlxxxxgxtxxxxalxxaxxxxxxxxxxxr
+xxxxxxvilxTDGxxxxxxxxxxxxxixvxxigigxxxxxxxxxxxlxxiaxxxxxxxxxxxxxxxxLxxxxxxixxxi
+>61e58fd4d97efb70b78410488ce6cac8
+GNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGAR
+PDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI
+>gi|260837234|ref|XP_002613610.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]gi|229298996|gb|EEN69619.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]
+-----LYPYGSySGGYPPSNMEKTMG-PGNYRVPLvaGGETITIGSIKKTEETSPseslsaekQAVVAAQDTRECTMSSITiySEERLRGTKKTYSGNGW
+LPRDPS-----WVVDSAGPAWVDSNGVTWEDV-------VTVDNVQSGDQ------RQVFGGFQGKARYWKLVITQTYTGWQPYVRE-----
+>gi|317505805|ref|ZP_07963650.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]gi|316255887|gb|EFV15112.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]
+--ATVILLLDISESMRatdvkPSRVEAARAAAIKFVDGM-APTVQLGVVTFAGNAQPLVRPSTD--HETAKKVIDQMIrpdKLEKQTATGEGIYTALQQI
+EtiAGalGGKNHA-PPARIVLVSDGKETVpdDLNAprgaYaaartaKEKHVPVCTVAFGTKAGkitldnqvdeVPVDLESLKKISDLSNSPgnscRFFPA
+ESQGELAQIYQSLNEDI
+>gi|224080450|ref|XP_002190370.1| PREDICTED: von Willebrand factor A domain containing 5B1 [Taeniopygia guttata]
+---EFIFLVDRSRSMSGVNISHAKDALLVILKSLMPA-CLFNVIGFGSTFKTLFPVSQAYCEESLLMACQSIRRIRadmGSINLLSPLKWVTRQPL----
+--HRGHPRLLFLLTGGAISNTGKVLEllrttPCSTRCYSFGIGPN----ACRRLVRGLAAVSRGVSEFLAEGERLQPKMIRSLKKAM
+>gi|327441394|dbj|BAK17759.1| uncharacterized protein containing a von Willebrand factor type A domain [Solibacillus silvestris StLB046]
+QGRDIVFVIQDTPDIQSHDPDQSR--VTEVLSLMDDasSKDRFGFVGFNKEVTKELALTNNI--VQAKSKLNEFGKnisPYMANDLSKGLEKAVDELTKK
+ST----SNDKVIVIMTVGNSiYNEVSKklaakAYEEDITIHTISFGDPL-YA-DAPFLTEIAKLTGGNYT-HSPNAAFLKDVLSKLS---
+>gi|156404021|ref|XP_001640206.1| predicted protein [Nematostella vectensis]gi|156227339|gb|EDO48143.1| predicted protein [Nematostella vectensis]
+-QIDIVFVLSASSMKSSTTFSLMQNCILKIGSKFGVYTFHYSVILYGSSSVKKFDFNtAFPYREALIEESNNLVKENGSSAITEALSFARTVLNDASA--
+RSNVRRGVAVIFDKATGKTVqqlqsaaRPLHDEGIIVVASGVGPE----VTKEEARAMTSRR--NDATHVNDTYQPGPLGDHIVRRI
+>gi|288918847|ref|ZP_06413192.1| conserved hypothetical protein [Frankia sp. EUN1f]gi|288349809|gb|EFC84041.1| conserved hypothetical protein [Frankia sp. EUN1f]
+----LLLVIDHSTSMA-ETWAggtmskadqlalAVNRLLGNAVLLCSrgddrvYDYFEVGILGYGRGVAPVLYgssvsrpllpiseVALNP--NRVDHVL
+RKVPDgagglvevqtpipawvdpvADGWTPMVEALRVAAWVVDGWCRTHTASFPPIVVNVTDGQSTDGDPRAAAAQVRAAGTADGNAL-------LFNAH
+LSATMRRAVTFPRDRADLPGEFAQVLFDM
+>gi|237801322|ref|ZP_04589783.1| magnesium chelatase subunit ChlD [Pseudomonas syringae pv. oryzae str. 1_6]gi|331024181|gb|EGI04238.1| magnesium chelatase subunit ChlD [Pseudomonas syringae pv. oryzae str. 1_6]
+------VIVDASASTrRHQALSQAKGLLSQVFDDAYRRRARLALLTASGAvPRWQHQGLKAS-----AALVPWLDGLGagGGTPLTAALEQA-RAWLEQR
+QKRYPAEQHRVLVMTDGRIKQLPVLSAFTCASLLI------------------------------------------------
+>gi|268576625|ref|XP_002643292.1| Hypothetical protein CBG08168 [Caenorhabditis briggsae]gi|187032944|emb|CAP28053.1| hypothetical protein CBG_08168 [Caenorhabditis briggsae AF16]
+-KMDIIIAFDSSDTISQEMYYSTIGAVKKIGNSItiGQDKSRIIVGTYDATSHFNGNLNTIDSFDRYQEKIADLFSLGYTGINGNNVQSVLDFIIVENST
+apLRQaPVRKLLILLSSqGWDQGNFvegkeqgfqdPTNSAQslqkiGLETFAIGLGNT----ANMSQLSAIAKCST-----KVMSESALYNVVFQIISNI
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+I 132 * 6846 * * 3655 * * 1333 * 2935 6814 * * * * 6380 6319 1511 * * 132
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+
+G 133 2191 5594 6989 6795 5719 1059 * 5660 * 5510 5765 * 5674 5126 6543 3345 5220 * * * 133
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+
+I 134 4590 6662 5412 * 3464 * * 2056 6907 2618 6379 * 6832 * * 4320 4709 2044 * 3812 134
+ 31 6592 6542 2322 322 * 0 9425 1000 1295
+
+G 135 4907 * 3473 5698 6540 777 * 6837 5696 6410 * 4392 5674 5605 5648 4383 4129 6612 * * 135
+ 28 6925 6496 0 * 1838 473 9462 1011 1477
+
+K 136 3969 * 2730 2863 * 3980 * * 4042 5708 5685 3085 3188 4518 6344 3111 3836 * * 5958 136
+ 14 * 6668 0 * 1060 943 9378 1257 1722
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+H 137 3081 * 2460 3911 6711 3463 5679 5557 3612 4437 6634 4217 5034 4362 5670 3341 4517 6588 * 4342 137
+ 1002 6107 1040 4170 82 * 0 9446 1089 1452
+
+F 138 2909 * 3810 * 2727 3661 * 4677 4792 2608 * 3481 3974 * * 3220 5568 5464 * 5503 138
+ 852 * 1165 * * 4126 85 8438 0 7031
+
+Q 139 5087 * 2571 2949 * 2652 * * 3423 3935 3919 2961 * 3961 4902 * * * * 3991 139
+ 909 3517 1395 2973 197 4819 52 7550 1365 8120
+
+T 140 4305 * 4193 4213 4576 3380 * * 4333 * * 2874 4701 4245 * 3428 2753 2901 * 4305 140
+ 372 3449 2879 2028 406 6381 17 6738 1205 8503
+
+K 141 2248 * * 3221 3220 2547 * * 3278 * * * 3417 4219 3227 * 4421 * * * 141
+ 83 * 4161 * * 1289 759 6595 0 8570
+
+E 142 2121 * 5568 3773 * 4705 4611 3078 * 3724 * 5916 5457 5565 * 3819 4060 2401 * 5506 142
+ 32 * 5524 * * 260 2598 8500 0 6890
+
+S 143 3656 6598 2100 4172 4667 3051 4785 5660 5131 6754 * 2813 * 5416 6397 3402 3722 6876 * 6468 143
+ 18 * 6297 * * 400 2045 9262 0 2454
+
+Q 144 5739 * 3906 3591 6896 4381 6602 * 3245 3122 4263 5546 3657 3942 3180 4402 4605 3820 5830 4656 144
+ 0 * * * * * 0 9406 0 1444
+
+E 145 2860 * 3382 2628 * 5095 4612 5626 3574 * * 4349 4754 3656 3586 3055 4934 6813 * 5678 145
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+
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+ 0 * * * * 0 * 9453 0 1026
+
+L 147 4557 5617 * * 4554 * * 3236 * 875 2931 6752 6595 * 6448 6377 * 4722 6575 5611 147
+ 0 * * * * * * 9461 0 0
+
+H 148 3953 * 3715 2732 6613 5705 5270 5566 2766 5191 5684 3926 * 4200 2692 4075 3862 5909 * 5736 148
+ 47 * 4976 * * * * 9461 0 0
+
+K 149 3017 * 4084 3035 * 3482 5076 6904 3432 3849 6748 4418 6591 3526 4886 3141 3246 * * * 149
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+F 150 5004 * 5308 * 3892 * 6336 1389 * 1804 3800 6855 * * * * * 3118 * * 150
+ 0 * * * * * * 9461 0 0
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+A 151 830 * * 6718 4782 5810 6752 6652 6385 4596 * * * 5702 * 3032 3328 4053 * * 151
+ 14 * 6710 * * * * 9433 0 0
+
+S 152 5010 5863 3525 3660 6613 2452 5763 * 4276 * * 5725 6351 5610 3951 1780 3721 5113 * 6555 152
+ 42 6653 5742 0 * * 0 9394 1000 1000
+
+K 153 3565 5476 3345 3867 * 3127 4694 6252 3492 3941 6509 4623 4937 3976 4360 3111 4544 5562 * 5081 153
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+ 492 5550 1902 1314 743 * 0 9351 1169 1989
+
+A 155 3249 * 2769 * 6241 2646 6174 5639 3889 5186 4878 3623 4986 4929 4222 2977 3832 5969 * * 155
+ 144 * 3401 0 * 1220 809 8974 1018 5319
+
+S 156 5272 * 4869 2861 * 1489 6141 6023 4000 6212 * 4122 5204 5040 3728 3343 6093 6269 * 5397 156
+ 245 * 2680 * * 414 2004 9070 0 4503
+
+E 157 4339 * 4327 2689 * 3133 4856 4938 3287 4596 * 2971 6304 3279 4577 4727 4413 6115 5454 6199 157
+ 250 2777 6244 746 1308 647 1469 9231 2810 3660
+
+F 158 3951 6247 5110 6338 2796 6427 2672 * 3700 4884 6507 3305 5278 4084 4156 6302 4179 5510 * 3124 158
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+V 159 2746 * * * 2638 6370 * 3918 5716 2951 5629 6713 * * * 4852 4958 1877 * 3396 159
+ 66 * 4493 * * 772 1271 9344 0 1718
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+K 160 4856 * * * 1644 * 6614 3326 5535 3436 5041 * * 4520 * * 4712 3587 * 2144 160
+ 32 6435 6579 1000 1000 546 1667 9322 1000 1927
+
+I 161 4917 * 6196 4225 4851 5708 3942 3093 3697 5515 5455 4620 4507 4075 3709 3540 3259 3748 * 4141 161
+ 0 * * * * 0 * 9370 0 1353
+
+L 162 2437 * 5824 6544 6312 6441 6409 3336 6513 2323 5568 5003 4777 * * 4583 4634 1982 * 5846 162
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+D 163 4824 6440 2557 3184 * 4009 6413 * 4273 4887 6293 3078 3511 4585 4118 4040 2891 * * * 163
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+
+T 164 6758 * 1863 3658 * 3523 * * 4398 6576 6643 2665 6322 5743 4986 2529 3505 * * * 164
+ 17 * 6446 0 * 0 * 9245 1058 1058
+
+F 165 3551 * 6233 4467 2459 4652 * 4393 5564 4587 4812 4436 3114 5667 5201 4309 4862 3921 6406 3090 165
+ 38 5274 * 1324 736 0 * 9272 1211 1007
+
+E 166 3210 6465 2790 2458 * 4442 6390 * 4231 6298 * 3827 5217 4002 6143 3192 3682 5710 6296 4754 166
+ 32 5530 * 0 * * * 9250 1175 0
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+K 167 2946 * 2563 2782 6386 3871 6398 * 3665 4282 6511 4432 * 3554 5285 3300 4328 6181 * * 167
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+L 168 6160 * 6094 * 5410 * * 3906 * 543 3985 * 6092 6451 5499 * * 4063 5411 * 168
+ 0 * * * * * * 9214 0 0
+
+K 169 3282 * 3234 4727 6420 4247 6358 4720 3193 * * 3494 3143 3676 4082 3688 4428 4686 * 5199 169
+ 20 6205 * 0 * * * 9209 1006 0
+
+D 170 5304 * 2962 3406 * 3330 6235 * 3924 6205 6404 3289 4241 2958 4213 3141 4011 5507 * 6267 170
+ 0 * * * * * * 9171 0 0
+
+L 171 2661 6283 * 5156 4713 * * 2250 4598 2370 5272 5160 * 5153 4718 * * 2756 * 4327 171
+ 0 * * * * * * 9084 0 0
+
+C 172 5342 6218 * * 2285 5978 * 2745 6203 2734 4696 6356 * 4726 5188 5171 4681 2185 * 5312 172
+ 0 * * * * * * 9084 0 0
+
+T 173 4186 * 2587 3719 5203 5083 * * 3243 4569 6319 2771 4190 3879 4002 4116 3904 6122 * 6044 173
+ 0 * * * * * * 9007 0 0
+
+E 174 5130 5178 4195 2510 * 4585 4557 5204 3199 4551 6402 5139 5127 2769 3643 3234 4350 * * * 174
+ 24 5907 * 4000 93 * * 8986 1012 0
+
+L 175 5952 * * 5108 4139 * * 1269 * 1599 3823 * * * * * * 3602 * * 175
+ 0 * * * * * * 8768 0 0
+
+Q 176 2869 * * * 4085 4735 * 3338 4097 2971 4854 5760 * 2501 3924 3724 * 3727 * 4835 176
+ 0 * * * * * * 8381 0 0
+
+K 177 5457 * 2286 2968 4298 5543 * * 2926 * 5504 3947 * 3751 3794 2880 4398 * 5381 * 177
+ 0 * * * * * * 8134 0 0
+
+K 178 4190 5176 3225 2840 * 4304 * * 2084 4173 * 5155 * 4335 3241 3349 5324 5473 * * 178
+ 0 * * * * * * 7957 0 0
+
+I 179 * * * * * * * 853 * 2035 3787 * * * * * * 2945 * * 179
+ 0 * * 0 * * * 7385 0 0
+
+//
+�HHsearch 1.5
+NAME 665b4706556bcfdcefa8812b17dc787c
+FAM
+FILE 665b4706556bcfdcefa8812b17dc787c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:15:57 2013
+LENG 233 match states, 233 columns in multiple alignment
+FILT 122 out of 1206 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEECCCCCCCEEEEEEEECCCEEEEEEEECCCEEEECHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCC
+CCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCEEEEE
+EEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9999999987898699999818985999999719999989899377885699994121356788717999999997987877766565899992575436
+7744446747765432344679879999856657888777556899999867899765415777867599632789974445788882799309939999
+999737787888986189997997999999859
+>Consensus
+ixxgxxxxxxxxPxxvxixxxxxxxxCxGtlIxxxxVLTaaxCxxxxxxxxvxxgxxxxxxxxxxxxxxxvxxxxxxpxyxxxxxxxDiallkLxxxixx
+xxxvxpxxlxxxxxxxxxxxxxxxxxxxgxgxxxxxxxxxxxxxxxxxxxxxxxxCxxxxxxxxxxxxxCxxxxxxxxxxcxgdsGxplxxxxxxxxxlx
+GixsxxxxcxxxxxxxvxxxvxxxxxWIxxxxx
+>665b4706556bcfdcefa8812b17dc787c
+IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITF
+RMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVT
+GIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK
+>gi|339237293|ref|XP_003380201.1| putative ovochymase-2 [Trichinella spiralis]gi|316977003|gb|EFV60183.1| putative ovochymase-2 [Trichinella spiralis]
+-----KASPYSMPWSVII-QTKDK-VCGGVLIrlektanSSNTVLASSYCFSQKfgkmysyVNTKVHLGVHTFPSDS-DKVTVGIKQVTSTP-YEQGMIK
+KDIALITLLSEVEFNEKIRPICLPSINY---KPPTATKYPLVGWVLSKLTRfRKIPYLLQVPIILFEPSECAMMLEIFSDDDHICGYFYDPHMfnNSVPL
+DLGSALISTYRRNLFIIGLFSAMIRfENMTGHILLFSRISTSVEWI-----
+>gi|319891581|ref|YP_004148456.1| hypothetical protein SPSINT_0291 [Staphylococcus pseudintermedius HKU10-03]gi|317161277|gb|ADV04820.1| hypothetical protein SPSINT_0291 [Staphylococcus pseudintermedius HKU10-03]
+------------------YESGTHKQCTAILISSSVALTAKHCGGDHpttYNGTIYPGESGLSTPFG---YMNISTYIPNPDY-------DIAILKgteQ
+DKTNAYKYYIKPFKT----------------PVTAFSDETLSSFIGQDVYSYGYPSKYGGYKQYRSDGKMNFYEKNNKLFLTSLPTFEGQSGSGIF-KKD
+GQ--FVGLLITRTQDYEGNFLPFTQEVA---EWVNTNSN
+>gi|157130425|ref|XP_001655710.1| hypothetical protein AaeL_AAEL002577 [Aedes aegypti]gi|108881970|gb|EAT46195.1| conserved hypothetical protein [Aedes aegypti]
+-------------------------------------------------------------------VFQTAKKVVHPDFNPASNVANIALLFLKERSEI
+NHLACTFDINET-------FNDQTCLIVGWNNDNFENIRSTSVTPNKQPISILQSSDSYLHTLSTAR-------NQSKQSCNRWRGATIICldQKDQNWK
+IIGIAAKNNErCDANGIPETLVAIPQLSPWIREQL-
+>gi|313236555|emb|CBY19847.1| unnamed protein product [Oikopleura dioica]
+---------------------NNFRLCTATLLTPTTLITTAGCTGSDanNRLFAKIGQANFDPraPSDHVQTIMIRRCVAHPKYVRGEPNNDLQICFLAE
+SIKQAKGIMIPCLTDTQ----IKLNDGDIVVTESRTNFNKGKTEGYPMRTHIPISGKYSQGKTDKER---------GYAFGDPLCMKEVGSPVFREDVNQ
+RTLVGLVQGALTpenqC--PTRLFNIVDLRDHVDWITATTK
+>gi|325194105|emb|CCA28172.1| AlNc14C1403G12929 [Albugo laibachii Nc14]
+-------------------------VCAACLIDTMNVATSSSCIrYQVQSPGDRWQFKFQKVGGGFKKSRFVTQITHAPNFQMYQMTGDFAILKLDTPIV
+---EIHPVLISNKAPR-----VGSKLHIFG---VAPANPETEKMIMGTLTVQSTDTCQLAFEGkppnlytpkYDGKQLFCAK--SQCSAVCEGELGMPFa
+redIVNNTVRLILYGIQASASVECDPRKTSSYGVPFSHENFFESYSK
+>gi|195112812|ref|XP_002000966.1| GI10530 [Drosophila mojavensis]gi|193917560|gb|EDW16427.1| GI10530 [Drosophila mojavensis]
+-------------HLVYL-RFNYNIICSGIVVNNRTVLTVTSCLDRKEPPKIIVHFTD-------GTAQTASSSSPSSDYTMSSGSNLLSFLHLEKPLDQ
+EfDTPPPFCT-------QAVRPQDNVMQLNWDKNY------SRPIPRFVPQMPLDQCQTLNRDarMLAPAVHCVE-NTQYTDECIRSYGLPYVWKGA---
+-FCGMNINGHNCSVPSNADVYVRLLREKRLISKMLR
+>gi|301166151|emb|CBW25726.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
+--------------------------CTATLVGKSCIITSSVCAKLDrvVEFNIPSSEDGVPALAKAEDTYEVDPSSFSYDNSG--IGKFWAVAKLKRNA
+LTGKLPGEVQGYFPVISK-KPRKNDKIYILQYANTNPDRYdvisgevganpngys-lNYSQSSANGVLV-------KAGIFLIPEII-----YHNVDVSH
+GGAGAPLINSSTHE--VVGVHTHG-GCQSGqgrGR-------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+I 1 4685 * * * * * * 816 * 3743 * * * * * 4687 3708 2300 * * 1
+ 0 * * * * * * 7293 0 0
+
+V 2 2171 * * 4784 4765 * * 1930 * 3838 4896 * * * * 3135 2729 3752 * * 2
+ 0 * * * * * * 7381 0 0
+
+G 3 5041 * 5194 * 5239 1214 * * * * 5148 1393 * 5813 5134 * 5080 * * * 3
+ 40 5194 * 0 * * * 8064 1000 0
+
+G 4 4363 * 5335 * * 522 5216 * 4264 * * 4378 5319 * 5291 4244 * * * * 4
+ 66 4473 * 1806 486 * * 8373 1192 0
+
+Q 5 5340 * 5375 2602 5385 5610 * * 3876 5471 * 5566 4668 3451 2558 4480 2943 3198 * 4445 5
+ 20 * 6189 * * * * 8547 0 0
+
+E 6 4736 * 2986 3008 * * * 5766 3728 4062 * 4831 2217 4155 3316 4215 4127 4626 * * 6
+ 0 * * 0 * 0 * 8910 1000 1000
+
+C 7 1833 4754 3847 4862 * * * 5828 5823 5734 * * 3824 * * 3988 2789 2224 5920 6028 7
+ 0 * * * * * * 9129 0 0
+
+K 8 4988 * 3092 4032 5620 3965 * 4522 3619 4390 * 2999 2687 6085 4427 2793 5011 * * 5938 8
+ 0 * * * * * * 9276 0 0
+
+D 9 3498 * 3692 3901 6340 4102 6098 4156 4933 5994 5870 3438 3257 4362 3639 3157 4813 4542 4505 * 9
+ 0 * * * * * * 9303 0 0
+
+G 10 4911 5841 3428 3278 4892 1844 4955 * * 5058 * 3728 6192 4462 * 3255 3754 6061 5943 4874 10
+ 25 * 5853 * * * * 9389 0 0
+
+E 11 4442 * 4001 1973 * 4022 6704 6160 3612 * 5957 4156 4641 2889 3274 3535 5806 * * 6049 11
+ 0 * * * * 0 * 9470 0 1001
+
+C 12 3903 6429 6273 * 2236 * 3506 5017 6303 4659 5279 * * 5032 6153 3797 5129 5152 3088 2261 12
+ 27 6712 6842 2000 415 * * 9564 1000 0
+
+P 13 3946 * 6325 * * 6406 6147 6022 * * * 5416 416 4302 * 4464 * * * 6310 13
+ 17 6448 * 2322 322 * 0 9699 1019 1150
+
+W 14 6186 * 6438 * 3387 6412 3706 * * * * 4745 5054 * * 4590 * * 1158 2098 14
+ 0 * * 2322 322 862 1153 9873 1000 1150
+
+Q 15 4121 * * * 4653 6416 4177 3854 * 2448 3343 4846 6280 3987 5523 3464 4565 2413 * 4975 15
+ 0 * * * * * 0 10038 0 1000
+
+A 16 1958 4674 * * * 3402 * 6546 * 3845 5495 6613 * * * 6617 4995 1137 * * 16
+ 58 4939 7181 2361 312 0 * 10038 1423 1000
+
+L 17 3495 * * 4214 4961 3752 6328 4469 5330 3464 4926 * 5858 4469 2830 2603 3779 3640 * 5353 17
+ 0 * * * * * 0 10040 0 1000
+
+L 18 6468 * * * 3473 4318 * 1612 6357 2098 4926 * * 6618 5858 5519 5425 2857 * 4954 18
+ 899 3090 1530 913 1093 0 * 10040 2663 1000
+
+I 19 5825 * 5337 5830 2677 4304 4294 4267 3617 3545 5022 * * 5786 3617 4194 * 3571 5908 2498 19
+ 287 2469 * 1559 598 202 2939 9329 2758 5572
+
+N 20 5491 * 3276 4099 4544 4491 5291 3891 4080 4138 6344 3912 * 4352 4171 3985 3750 3905 5373 3206 20
+ 32 6716 6349 1000 1000 2029 406 9991 1007 1602
+
+E 21 5299 * 5006 3653 5279 3418 * 4903 3433 5246 * 2996 3738 5550 3648 3358 3696 3626 * 4829 21
+ 28 5684 * 923 1081 2150 368 9993 1227 1614
+
+E 22 4954 6507 3028 3533 4442 3094 6695 * 3864 4938 6283 3043 3569 4944 3438 3494 4983 * * 6623 22
+ 64 4516 * 2455 290 1595 580 10033 1630 1437
+
+N 23 5505 * 3364 3859 5093 2021 5586 6390 4570 6651 * 3377 6386 4340 4296 2963 4093 * 5453 4911 23
+ 328 2486 5344 2120 377 1032 969 10057 3602 1559
+
+E 24 4495 5135 6169 5602 4578 3225 4881 * 2840 5633 * 3293 4930 3921 3507 3217 3496 5599 * 4491 24
+ 128 3980 5538 1945 434 * 0 10137 1930 1583
+
+G 25 4629 * 6514 5644 2658 4215 3129 4852 4909 4932 6744 5058 4129 3915 3414 3794 6465 3798 6163 3727 25
+ 107 3994 6806 2035 403 566 1625 10128 1827 1993
+
+F 26 3923 * * * 3122 6826 4187 3444 5293 2776 * 4982 4637 4378 4261 4563 3798 2708 4956 5594 26
+ 32 5505 * 1577 589 0 * 10188 1197 1383
+
+C 27 5938 252 * * 5783 4640 6550 * * 6249 * * * * * 4246 6805 * * * 27
+ 9 * 7406 * * * * 10349 0 0
+
+G 28 3791 * * 6774 6718 2700 6729 5162 * 4754 5880 4232 5581 5161 5778 2060 2223 4499 * 4465 28
+ 0 * * * * * 0 10369 0 1000
+
+G 29 2073 5476 * * * 594 * * * 6756 * * * 6269 * 5747 * 4779 * * 29
+ 0 * * * * * 0 10383 0 1000
+
+T 30 2948 5034 * * 4785 6232 6713 4839 * 4686 * 5230 * * * 3086 1427 2464 * 6730 30
+ 0 * * * * * 0 10383 0 1000
+
+I 31 5346 * * * 4305 * * 2303 5714 1174 4154 * * * * * * 2956 5643 4192 31
+ 0 * * 2000 415 0 * 10387 1000 1000
+
+L 32 * * * * * * * 1156 * 2080 7102 * * * * * 4824 1988 * 5641 32
+ 53 4791 * 2894 209 * * 10391 1571 0
+
+S 33 3903 6844 3563 6704 5446 2778 4323 * 5211 * * 2796 * 6907 5429 1843 3049 * * 6711 33
+ 0 * * * * * * 10391 0 0
+
+E 34 5275 * 3523 3641 * 4322 * * 4137 6985 * 3019 1904 5774 3700 3144 3989 5492 * 6937 34
+ 0 * * * * * * 10411 0 0
+
+F 35 * * 2738 4456 7157 5110 * 5348 3821 5913 6779 2643 6772 4086 1962 3824 4439 6884 * 4736 35
+ 56 5124 6734 1999 416 * * 10447 1404 0
+
+Y 36 5464 6659 6929 * 3413 * 2348 4791 * 3834 5853 6776 * 5962 5988 4936 3454 3405 2401 3369 36
+ 33 5451 * 2755 231 0 * 10435 1270 1000
+
+I 37 3697 * * * 5072 * 6774 1978 * 3697 5862 * * * * * 6844 999 6738 5848 37
+ 8 * 7481 * * * * 10452 0 0
+
+L 38 4928 * * * 6539 * * 2685 * 797 5089 * * * 6767 * 6734 2493 * * 38
+ 0 * * * * * 0 10448 0 1000
+
+T 39 5082 * 6767 * * * * 5233 6309 * * 6596 6327 * * 3375 348 5862 * * 39
+ 15 * 6587 * * * 0 10448 0 1000
+
+A 40 957 * * * * * * * 5096 * * 7136 5743 * * 2035 3163 4585 5524 6527 40
+ 0 * * * * 956 1045 10434 0 1196
+
+A 41 905 6857 * 6655 * 3584 6734 5530 3748 5790 * 4839 * * 4500 3311 4536 6843 * 6818 41
+ 0 * * 2000 415 0 * 10448 1000 1000
+
+H 42 5918 * 4375 5380 5972 5254 1289 5870 4232 6675 * 4402 6350 4331 5198 3002 3870 * * 4323 42
+ 18 7136 7481 1000 1000 * * 10452 1000 0
+
+C 43 6160 321 6626 * * 6896 * 4713 * * * 4928 6850 * * 5078 * 4114 * * 43
+ 70 * 4395 * * * 0 10448 0 1000
+
+L 44 4683 5877 * * 2728 6882 * 2783 6602 2229 5067 6017 * * * 4719 3934 2001 * 5847 44
+ 94 4186 6966 1472 645 2807 223 10399 1952 2076
+
+Y 45 3750 7415 3313 3829 4394 4039 4164 6889 3771 4160 4494 5156 4231 5279 4206 3514 5077 5268 6955 3471 45
+ 68 6143 4956 2155 367 1157 859 10396 1189 2119
+
+Q 46 5206 5887 2774 4267 6749 3119 5700 6237 3493 4748 5659 4609 3993 3932 4571 2831 4833 5923 6510 4620 46
+ 126 4414 4760 2320 322 2175 361 10391 1947 2477
+
+A 47 4429 * 3551 4777 6536 3269 5884 5846 3444 3863 4900 3758 3685 3906 3945 3910 3801 5146 * 4679 47
+ 956 1139 5038 2564 267 800 1233 10363 7045 2874
+
+K 48 4693 * 3494 3510 * 3492 6704 * 3653 7045 6612 3700 3649 4133 3735 3105 2942 5867 7113 5081 48
+ 53 5598 6016 1000 1000 2931 203 10349 1208 2321
+
+R 49 4118 * 3503 2959 7062 3543 5628 5923 3933 4281 6768 3841 3251 4005 4102 4172 4167 5813 6439 4891 49
+ 51 6939 5246 1000 1000 1472 645 10367 1006 2483
+
+F 50 4835 * 5408 5734 3146 4834 5126 3673 6713 2376 5349 4286 4430 5066 6990 4314 4020 3303 * 3439 50
+ 25 5884 * 1659 549 2148 369 10363 1345 2514
+
+K 51 4995 * 4238 3938 4374 4764 3879 3780 3336 4534 6944 5058 4508 4603 3546 3768 3419 4217 5844 4815 51
+ 22 6760 7418 2461 289 1875 459 10383 1175 2155
+
+V 52 3415 * 6707 4821 4290 4574 * 2833 4874 4243 5149 5603 * * * 6704 4803 1249 6897 5828 52
+ 0 * * 0 * 2684 244 10388 1000 1978
+
+R 53 5079 6929 4620 5963 4028 5897 4385 4091 4338 3897 4865 5953 5280 5340 2401 4062 3375 3357 * 4053 53
+ 31 * 5554 * * * 0 10392 0 1805
+
+V 54 4413 6593 5695 5113 3435 4955 * 3114 7080 2032 6790 5249 4008 * * 5239 5480 2306 6697 4499 54
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+ 26 5819 * 4112 86 2374 309 10535 1205 1815
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+Q 182 3955 6773 4836 4455 4881 3474 4017 6699 5855 5344 4780 3077 3062 3565 3977 4124 4364 5799 4797 5262 182
+ 33 6929 6112 1000 1000 443 1920 10536 1006 1628
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+G 183 4284 6843 4845 4240 4863 902 6779 5400 5818 4749 5859 5459 6654 5711 4957 7071 5964 4291 * 5706 183
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+ 24 5924 * 2906 207 * 0 10555 1192 1348
+
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+ 82 4174 * 1203 822 * 0 10538 2085 1176
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+ 37 5856 6909 1395 690 967 1033 10538 1391 1176
+
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+ 91 4171 7443 1336 728 895 1114 10527 2013 1197
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+ 63 5819 5327 1455 655 * 0 10529 1195 1570
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+D 195 6532 * 3482 3755 5510 1490 6719 6485 3609 6550 * 3119 5529 4618 4402 3859 5073 6486 * * 195
+ 256 3219 4178 1695 533 3557 128 10309 2733 4777
+
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+ 146 5018 3939 1484 638 4875 50 10198 1332 5192
+
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+ 10 * 7208 * * 1121 888 10086 0 3003
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+Y 215 3929 * 5535 5136 3952 5102 6608 3698 6585 3754 5590 5691 1316 5379 * 6563 4387 6783 * 3548 215
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+G 216 2866 6223 2735 3244 5037 2898 5612 4942 * 4055 7049 4479 4518 * 4986 3181 5545 5303 * 4997 216
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+Y 218 4242 6738 6611 6587 1551 4332 5093 4995 * 4805 6312 5504 * * 6389 4731 6499 3826 * 1922 218
+ 0 * * * * 542 1675 10140 0 1405
+
+T 219 3014 * 6347 * 6551 4909 6558 3733 6797 3843 5139 4358 * 4606 * 3532 1579 3107 * * 219
+ 15 6641 * 0 * * 0 10185 1028 1000
+
+K 220 4052 * 2557 4388 5551 4992 6481 * 3632 6687 6763 2922 4608 5228 2003 4157 6420 6442 6750 5584 220
+ 0 * * * * * 0 10185 0 1000
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+V 221 6534 * * * * * * 1950 * 2264 5611 * 6442 * * 6477 4138 1283 * 6481 221
+ 38 5251 * 481 1819 * 0 10185 1321 1000
+
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+ 16 * 6502 3000 193 0 * 10170 1000 1000
+
+A 223 3385 6742 4116 5181 4273 4919 4570 6607 4268 4961 6539 5047 3060 4352 3698 2848 4337 6719 * 3268 223
+ 14 6650 * 1000 1000 * 0 10145 1000 1017
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+ 0 * * * * 0 * 10129 0 1017
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+ 0 * * * * * * 10162 0 0
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+ 0 * * * * * * 10094 0 0
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+I 228 * * * * 4540 * * 493 * 2836 5075 * * * 6263 * * 3972 * * 228
+ 19 * 6260 * * * * 10038 0 0
+
+D 229 4955 6124 4681 2274 * 5552 6559 5266 2733 3385 5516 5476 * 3134 3399 4796 4770 3682 * * 229
+ 0 * * * * 0 * 9938 0 1020
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+R 230 4345 * 2817 3143 * 4589 4832 * 4056 6184 * 3191 * 2989 4434 2311 4780 * * 5291 230
+ 0 * * * * * * 9758 0 0
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+S 231 3902 * 5891 4677 4684 * 6120 3965 6277 5576 6127 2772 * 3833 6185 4744 2188 2262 * 5952 231
+ 0 * * * * * * 9731 0 0
+
+M 232 6082 * * * 5975 * * 1846 * 2304 2488 * * 5988 * 4327 3079 2984 * * 232
+ 0 * * * * * * 9536 0 0
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+K 233 3228 * 3557 2988 * * 5733 5813 2181 * * 2245 * 3000 4477 * 5719 5309 * * 233
+ 0 * * 0 * * * 8916 0 0
+
+//
+�HHsearch 1.5
+NAME 674c81cff4c6c504dd50e35c2bf78401
+FAM
+FILE 674c81cff4c6c504dd50e35c2bf78401
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:42:54 2013
+LENG 150 match states, 150 columns in multiple alignment
+FILT 72 out of 74 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
+CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEECCC
+>ss_conf PSIPRED confidence values
+9757705888886657655410568799999987548987786788898131277555443235677864463457873123445677788767884220
+47873578877668899971899968998899998505688897040689
+>Consensus
+xxxxtCxxxxxxxxxxxxxxkxxxxxqxxAxxxaxxAxxtxGkxxsxYPHxFxNxxxxxxxxxxxxexixFxxxxCxxpxxxxxxxxgxxxxxlxEfPix
+xxgxxYxxxskxxxxxPGpxRVIyxxxxxxfCGiitHtgxnxgxFxlCsx
+>674c81cff4c6c504dd50e35c2bf78401
+AVTWTCLNDQKNPKTNKYETKRLLYNQNKAESNSHHAPLSDGKTGSSYPHWFTNGYDGDGKLPKGRTPIKFGKSDCDRPPKHSKDGNGKTDHYLLEFPTF
+PDGHDYKFDSKKPKENPGPARVIYTYPNKVFCGIIAHTKENQGELKLCSH
+>gi|262367755|pdb|2KAA|A Chain A, Solution Structure Of Hirsutellin A From Hirsutella Thompsonii
+-PIVTCRPKLDGR------EKPFKVDVATAQAQARKAGLTTGK--SGDPHRYFAG-----------DHIRWGVNNCDK-----------ADAILWEYPIY
+WVGKnaEWAKDVKTSQQKggPTPIRVVYANSRgaVQYCGVMTHSKvdkNNQgkEFFEKCD-
+>gi|115388805|ref|XP_001211908.1| predicted protein [Aspergillus terreus NIH2624]gi|114195992|gb|EAU37692.1| predicted protein [Aspergillus terreus NIH2624]
+-QVYTCKRGANND-----GELIGKVPQDKAIGHFREAKTKAGK--SGYPKRFYNN-----------ENLKFKKG-CRD-----------KKVELWELPVL
+NGGQRYAYDKPKQEAPPGPMRVYYTKD-LKFCGIGTKSNrDNSGPVHLCK-
+>gi|238501164|ref|XP_002381816.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]gi|220692053|gb|EED48400.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
+---------------------------------------------RRYPHQFFNK-----------DEITWGNERCNKPE-------GGEQPVLLEFPIL
+LDKSqkkaiqeLYNYKQLKPRPEPGPCRIVTRKKGDDLCGVMCHIEygkKDAkPGFKRC--
+>gi|3915848|sp|P00654.4|RNU2_USTSP RecName: Full=Ribonuclease U2; Short=RNase U2gi|257472077|pdb|1RTU|A Chain A, Ustilago Sphaerogena Ribonuclease U2gi|300193153|pdb|3AGN|A Chain A, Crystal Structure Of Ustilago Sphaerogena Ribonuclease U2 Complexed With Adenosine 3'-Monophosphategi|300193154|pdb|3AGO|A Chain A, Crystal Structure Of Ustilago Sphaerogena Ribonuclease U2 Complexed With Adenosine 3'-Monophosphategi|300193158|pdb|3AHW|A Chain A, Crystal Structure Of Ustilago Sphaerogena Ribonuclease U2 Complexed With Adenosine 2'-Monophosphate
+-------------------------DINTAIQGALDDVA-NGDRPDNYPHQYYDE-----------ASEDITLC-CgSG--------------PWSEFPL
+VYNGPYYSSRD--NY-vSPGPDRVIYQTNTGEFCATVTHTGAASyDGFTQC--
+>gi|115402733|ref|XP_001217443.1| predicted protein [Aspergillus terreus NIH2624]gi|114189289|gb|EAU30989.1| predicted protein [Aspergillus terreus NIH2624]
+--------------NRQYAAHKYTVNQIQAAFRAGINLQSKGKqTgDNHYPHNFRNG-----------DRLALGA--CGN------------TRTKSEFP
+IQIDGKTYSGG----KVDAVPDRVIYEYKEskktleVWFCGIVRHGTGN--NFLNC--
+>gi|336364646|gb|EGN93001.1| hypothetical protein SERLA73DRAFT_146126 [Serpula lacrymans var. lacrymans S7.3]
+------------------------------------NPTPTATNGVIYPHRFSNN-----------ERITFHN--CPA------------AQTLVEYPLR
+L-----------PTEvGAARHRVVYDYNKpHQFCGCMTHDGAIGNQFVAC--
+>gi|83766539|dbj|BAE56679.1| unnamed protein product [Aspergillus oryzae RIB40]
+-------------------------------------NTQVGR--NRYPHQFNNR-----------EALQIPEE-FR-------------NRRLQEFPIL
+RG-QIY------SGQAPGAMRVILAQVGnnWLLAGVMRHPTGRGNAFELCQ-
+>gi|154296967|ref|XP_001548912.1| predicted protein [Botryotinia fuckeliana B05.10]gi|150843099|gb|EDN18292.1| predicted protein [Botryotinia fuckeliana B05.10]
+-----------------------TYDQSAIDAACKQALLlasekkTVGK--DKYPHAYNDY-----------EKFTFIPA--A------------KKPYL
+-EFPILSNGATYTGSD---PASPGADRIVIGSiatdyKSAIFCAVITHDGSTKNGFTEC--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 1206 0 0
+
+V 2 2130 * * * * * * * * * * * 2496 1442 * * * 2143 * * 2
+ 0 * * * * * * 2162 0 0
+
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+ 0 * * * * * * 2567 0 0
+
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+ 0 * * * * * * 2596 0 0
+
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+ 0 * * * * * * 2661 0 0
+
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+
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+ 0 * * * * * * 2661 0 0
+
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+ 0 * * * * * * 2661 0 0
+
+D 9 * * 2809 2752 * 3357 4417 * 2486 * * * * 2196 4042 * 3226 * * * 9
+ 0 * * * * * * 2661 0 0
+
+Q 10 3357 * * 4323 * * * * 4343 2568 * 2266 * 1229 * * * * * * 10
+ 0 * * * * * * 2661 0 0
+
+K 11 * * 2657 3676 * * * * 2706 3611 * 1579 2874 * * 4135 * * * * 11
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+
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+
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+ 0 * * * * * 0 1206 0 1548
+
+T 15 * * * * * * * * * * * 1891 * * * * 453 * * * 15
+ 0 * * * * * 0 1512 0 1548
+
+N 16 * * * * * 2407 * * * * * 884 * * 1891 * * * * * 16
+ 0 * * * * * 0 1512 0 1548
+
+K 17 * * * * * * * * 453 * * * * 1891 * * * * * * 17
+ 0 * * * * * 0 1512 0 1548
+
+Y 18 * * * * * * * * * * * * 2407 * * * * * 2451 670 18
+ 0 * * * * 530 1701 1512 0 1548
+
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+ 409 3075 2967 1000 1000 1943 435 2531 1066 1150
+
+T 20 3140 * 3326 2528 * * * 2989 * * * 3406 * * * * 1697 3557 * * 20
+ 0 * * * * 0 * 2448 0 1198
+
+K 21 * * 2969 * * * 3483 * 656 3488 * * * * * * * 4078 * * 21
+ 0 * * * * * * 2820 0 0
+
+R 22 * * * * * * * 3488 2018 * * 2969 3473 * 1810 2633 * * * * 22
+ 0 * * * * * * 2820 0 0
+
+L 23 * * * * 1479 3488 * * * 1277 * * * * * * * * * 2843 23
+ 0 * * * * * * 2820 0 0
+
+L 24 * * * 4409 * * * * 2244 2431 * 3934 * 3052 3232 * 1922 * * * 24
+ 55 * 4745 * * * * 3029 0 0
+
+Y 25 * * * * * * * 3904 * * * * * * * * * 1140 * 1061 25
+ 0 * * * * * 0 3009 0 1010
+
+N 26 * * 1693 * * * * * 4321 * * 1940 4479 4942 * 1724 * * * * 26
+ 0 * * * * * 0 3443 0 1010
+
+Q 27 * * * 4630 * * * 3328 * * * * * 1150 4541 * * 1448 * * 27
+ 0 * * * * * 0 3445 0 1010
+
+N 28 2660 * 1900 * * 4133 * 4525 3783 * * 1953 5227 * 5221 3951 5356 * * * 28
+ 0 * * 3459 138 * 0 3445 1000 1010
+
+K 29 4064 * 3014 * * * * * 2396 * * 1805 * 4532 3794 4812 2911 4149 * * 29
+ 0 * * * * * 0 3446 0 1010
+
+A 30 143 * * * * * * 3874 * * * * * * * * * 5257 * * 30
+ 0 * * * * * 0 3455 0 1010
+
+E 31 3315 * 4217 1979 * 5110 * 2608 2810 3136 * * * 3313 4570 * * * * * 31
+ 0 * * * * * 0 3455 0 1010
+
+S 32 2237 * 3701 3774 4595 4575 * * 4570 * * 4200 * 4393 3978 1987 * * 3926 5110 32
+ 0 * * * * * 0 3455 0 1010
+
+N 33 4709 * 6544 5419 * 4756 4718 * * 2983 * 1945 * 1676 4222 3577 5952 * * * 33
+ 0 * * * * 0 * 3441 0 1010
+
+S 34 1270 4723 * * 4735 * 4864 3354 * 2795 * * * * * 2768 * 4973 * 4187 34
+ 16 * 6469 * * * * 3451 0 0
+
+H 35 3349 * * 5893 * 3149 2256 5489 2943 4192 * * * 5269 2377 * * 4396 * 3474 35
+ 53 * 4791 * * * 0 3452 0 1000
+
+H 36 5713 * 4790 3787 * 5981 1983 4869 2614 6430 * 4075 * 2382 5613 3853 5485 4999 * * 36
+ 49 * 4899 * * * 0 3398 0 1048
+
+A 37 539 * 4012 * * 5906 * 4503 * * * 3642 5370 6449 * 3977 6705 * * * 37
+ 0 * * * * * 0 3417 0 1098
+
+P 38 6469 * 4414 * * 1721 5525 * 5000 4155 5265 4103 1310 * * 6650 * 4977 * * 38
+ 0 * * * * * 0 3416 0 1098
+
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+ 88 5176 4977 2154 367 1217 812 3416 1056 1098
+
+S 40 6134 * 3947 4179 * * 5065 * 3986 * * * 4526 4229 6321 2027 1344 5360 * * 40
+ 0 * * * * 296 2430 3380 0 1097
+
+D 41 2398 * 2048 * * 4494 5874 5452 3071 6575 * 5179 5026 * 6717 * 2437 3290 * * 41
+ 86 * 4118 * * * 0 3447 0 1000
+
+G 42 5315 5291 5544 * * 384 5462 * * * * * * 6131 * 5062 3403 * * * 42
+ 148 4676 4104 1000 1000 * 0 3441 1064 1117
+
+K 43 6349 * 4533 3383 * 4384 * * 1123 * * * * * 3025 2769 4195 * * 5854 43
+ 1442 5163 727 0 * 2515 277 3399 1041 1231
+
+T 44 * * * * * 2921 * * * * * 2003 * * 3187 3643 1222 * * * 44
+ 366 3442 2921 0 * 3535 130 2544 1041 2220
+
+G 45 4552 * 3798 2781 * 843 * * * * * * 3554 * * 3361 * * * * 45
+ 63 4552 * 0 * 82 4170 2678 1000 2160
+
+S 46 * * 3982 * * 4474 7055 * * * * 3476 * * 3623 715 4308 4219 * * 46
+ 0 * * * * 603 1549 3653 0 1038
+
+S 47 6079 * 4005 4901 * 1640 5721 5692 4402 5190 * 3340 * * 4183 2104 3854 * * * 47
+ 0 * * * * * 0 3667 0 1000
+
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+
+P 49 * * * * * * * * * * * * 0 * * * * * * * 49
+ 0 * * * * * 0 3667 0 1000
+
+H 50 * * * * * * 209 * 5242 * * * * 5238 * * * * * 3604 50
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+
+W 51 5805 * 4204 3991 3604 5040 * 5190 5691 5994 * 5039 4994 2538 2658 * 3945 4165 2637 5950 51
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+
+F 52 * * * * 655 * * * * * * * * * * * * * * 1454 52
+ 0 * * * * * 0 3667 0 1000
+
+T 53 * * * * 4352 3351 3457 * 4783 6377 4275 1763 * 5190 3609 5692 2637 * * 3683 53
+ 0 * * * * * 0 3667 0 1000
+
+N 54 5840 * 3063 * * * * * * * * 239 * * * 6002 * * * * 54
+ 22 6079 * 0 * * 0 3667 1003 1000
+
+G 55 * * 4343 5294 5369 1423 6580 * 3652 4572 * 3836 * * 3454 * * * * 2090 55
+ 2012 * 411 * * 743 1313 3648 0 1028
+
+Y 56 * * * * * * * * * * * * 2340 * * * * * * 317 56
+ 317 * 2340 * * * 0 1769 0 2639
+
+D 57 * * 0 * * * * * * * * * * * * * * * * * 57
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+
+G 58 * * * * * 517 * * * * * 1731 * * * * * * * * 58
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+
+D 59 * * 1883 * * 2288 * * * 2027 * 1843 * * * * * * * * 59
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+
+G 60 * * * * * 0 * * * * * * * * * * * * * * 60
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+K 61 * * * * * * * * 517 * * * * * 1731 * * * * * 61
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+Q 142 3383 * 5741 6778 * 1940 5426 * 5150 * * 4199 5111 1602 6560 3136 5197 * * * 142
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+S 149 * * 4161 5375 * 7052 * * 3301 * * 3788 5297 2791 4221 1243 3434 * * * 149
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+H 150 * * * * * * 0 * * * * * * * * * * * * * 150
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+
+//
+�HHsearch 1.5
+NAME 679a9284ef0ef040ad53936c4c1e9d7d
+FAM
+FILE 679a9284ef0ef040ad53936c4c1e9d7d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:09:07 2013
+LENG 204 match states, 204 columns in multiple alignment
+FILT 92 out of 106 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEECHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEEECCEEEEEEEECCHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCEEECCCC
+CCCCCCCCEEEEEEEECCCEEEECCCEEEEECCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECHHHHHHHCCCCEEECCCEEEEE
+EEEC
+>ss_conf PSIPRED confidence values
+9877605673663899999766897789956999970899489999778669999998638877625888967899988034777629998989938987
+5667642105899990795279766168970659962455489999999973756699765489999889987999806844453589836114416899
+9979
+>Consensus
+xxxxxxxxxxxxxxxdLkxYYsxxxxexxNxxgxxxxxxgxxxxxxxxxxxxxxixlxgxdxxxfkxxxxkxVDVFgvxxxxxxxxxxxxyGGVTxxnxx
+xxxdxxxxixlxvxxxxgxxtxxxxxxxxixKexvTlkELDfKiRkxLixxxxLYxxxxxxGxIxixmkdgxxytxDLxkkLqxxrmxxxIdsxxixxIe
+Vxlx
+>679a9284ef0ef040ad53936c4c1e9d7d
+SEHKAKYENVTKDIFDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDKHQKFTRIQIFGKDIERLKTRKNPGLDIFVVKEAENRNGTVFSYGGVTKKNQG
+AYYDYLNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVIDGRNIEKME
+ANIR
+>gi|334277106|gb|EGL95345.1| toxin, beta-grasp domain protein [Staphylococcus aureus subsp. aureus 21310]
+-----------TNINELIKYYTQKPLTFSNRWLYQ-YDDGNIYVEFKRYSWSAHIRLWGAESWgNINQLRDRYVDVFGLKDKDTRRLWWvytdTFTGGVT
+PAASSS--D--KPYNIYVQYKDKLQTFIGAHkIYQGNKPVLTLKEIDFRVRESLIKNKILYNENRNKGNIHIT-GGGNNFTIDlskrlhsdlanvyvknp
+qkitvevlid---------------------------
+>gi|34536505|dbj|BAC87686.1| exotoxin G variant 5 [Streptococcus dysgalactiae subsp. equisimilis]gi|34536507|dbj|BAC87687.1| exotoxin G variant 6 [Streptococcus dysgalactiae subsp. equisimilis]
+--YGSKLVYADEILNDlkasLRFAYDVTPLEYENVEItFVTT--NNIHINTGQ-KKSGCVLYVDSIVslgitDNFIKG--DKVDVFGLPYNFSSPNVDNI
+YGGVVKHSDDKLQ---SLQFVGILNQDGEETSLPSYTILIKHKQFTLQEFDFKIRKFLMETYSIYDSEsrYISGSFFLATKDSKHYEVDLF---------
+----------------
+>gi|145386879|gb|ABP65290.1| mitogenic exotoxin Z-43 [Streptococcus pyogenes]
+----------------levdnnslLRNIYSTIVYEYSDTVIdFKTS--HNLVTKKLD-VRDARDFFINSEMdeyaaNDFKAG--DKIAMFSVPFDWN--y
+lskgkVTAYTYGGITPYQK-tSIP---KNIPVN-LWINGKQISVPYNEISTNKTTVTAQEIDLKVRKFLIAQHQLYSSGssYKSGKLVFHTNNns-DKYS
+LDLF-------------------------
+>gi|4206380|gb|AAD11625.1| exotoxin C [Streptococcus pyogenes]gi|4206384|gb|AAD11627.1| exotoxin C [Streptococcus pyogenes]
+--------------SDLLYAYTITPYDYKDCRVNFS---TTHTLNIdtqKYRGKDYYISSemSYEASQKFKRD--DHVDVFGLFYILNSHTGEYIYGGIT
+PAQNNKV-NHKLLGNLFISGESQQNLNN---KIILEKDIVTFQEIDFKIRKYLMDNYKIYDATSpyVSGRIEI---------------------------
+-----------
+>gi|166409297|dbj|BAG06666.1| enterotoxin T [Staphylococcus aureus]
+--------------EGLKDFYSKKIDVYTNKKIN---EKDKYSVDIEVDNYVYRINTLDDKILnQFKVG--DYVDAWGHIINNKPIgkVIKFYDGDISKH
+SPL---DKPTniSYRINLFK-EQKQTEVTPEkELEIGNRYLTMKQIDYRIKSYLVKKQQLYT-EFYNGKIEISMLDGKKHFIDLSTYY------------
+----------
+>gi|341844123|gb|EGS85342.1| enterotoxin type C-2 [Staphylococcus aureus subsp. aureus 21269]
+--------------------------------------------------------------------DGKEVDIFGVNYFDqcyfsneniqcdSNQggg
+sKKTCMYGGITLNENNTN-NRIQPIVVKVYE-NDSVTLSF--DINIDKETVTIQELDYKVRNKLISKINLYHLggtSYETGYIKFIENGNRYYWYDMMpd
+pgftqsKYLMIYRGNETVESAK-TEIEVHL-
+>gi|297589926|ref|ZP_06948566.1| toxic shock syndrome toxin-1 [Staphylococcus aureus subsp. aureus MN8]gi|297577054|gb|EFH95768.1| toxic shock syndrome toxin-1 [Staphylococcus aureus subsp. aureus MN8]
+---------TNDNIKDLLDWYSSGSDTFTNSEVLDNslgsmrikNTDGSISLIIFP-SPYYSPA--------FTKGE--KVDLNTKRTKksqHTSEGTyi
+HFQISGVTNTEKLPTP---IELPLKVKVHGK--DSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTgGYWKITMNDGSTYQSDLSKKFEYNT
+EKPPINIDEIKTIEAEIN
+>gi|304388588|gb|ADM29185.1| Enterotoxin [Staphylococcus aureus]
+---------------------------------------------------------------------SKNVDVYAIRYSIncyggEIDKTACTYGGVT
+PHEGNKL-KERKKIPINLWINGVQKEVSLD-KVQTDKKNVTVQELDAQARRYLQKDLKLYNNDtlggkIQRGKIEFDSSDGSKVSYDL------------
+--------------
+>gi|225871304|ref|YP_002747251.1| exotoxin H precursor [Streptococcus equi subsp. equi 4047]gi|8117875|gb|AAF72809.1|AF186180_3 SeeH [Streptococcus equi]gi|225700708|emb|CAW95321.1| exotoxin H precursor [Streptococcus equi subsp. equi 4047]
+--------------------------------------------------------------------KDKEVDIYALSAQEACecPGkRYEAFGGITLT
+NSEK-KE--IKVPINVWDKSKQH----PPMFiTVNKPKVTAQEVDIKVRKLLIKKYDIYNNreqKYSKGTVTLDLNSGKDIVFDLyyfgngdfNSMLKIY
+SNNERIDSTQF--------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 * * * * * * * * * * * * * * * 0 * * * * 1
+ 0 * * * * * * 1000 0 0
+
+E 2 * * * 0 * * * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+H 3 * * * * * * 696 * * * * * * * * * * * * 1385 3
+ 0 * * * * * * 2187 0 0
+
+K 4 * * * * * 409 * * 2019 * * * * * * * * * * * 4
+ 0 * * * * * * 2580 0 0
+
+A 5 2275 * * * * * * * * * * * * * * 742 * * * 2355 5
+ 0 * * * * * * 2659 0 0
+
+K 6 * * * 2131 * 4224 4513 4967 1687 * * 4767 * 4603 3641 4567 3355 4889 * * 6
+ 348 2221 * 1000 1000 * * 3900 1357 0
+
+Y 7 4237 * * * * * 4778 * * 1330 * * 3085 * * 2601 * 2660 * 3798 7
+ 114 3714 * 0 * * 0 3869 1049 1357
+
+E 8 3651 * * 2373 * * * 3782 2093 * * * * 4237 * 3209 2620 3376 * * 8
+ 0 * * * * 0 * 3869 0 1357
+
+N 9 5523 * 4280 4008 * * * 5622 4949 * * 3419 * 2207 3813 3162 * 2115 * 3506 9
+ 0 * * * * * * 4291 0 0
+
+V 10 3866 * 4662 * * 4193 * 2748 * * 4427 * * 3202 3586 4617 2562 2060 * * 10
+ 0 * * * * * * 4186 0 0
+
+T 11 * * 3866 * * * 4779 * 4617 * * 2175 * 2722 * 1335 3560 * * * 11
+ 0 * * * * * * 4186 0 0
+
+K 12 * * 4233 2144 * * 3330 * 2313 * * 4011 3911 3537 4572 5166 3110 * * 5676 12
+ 358 2898 3542 758 1292 * * 4882 1357 0
+
+D 13 3698 * 1798 4441 * * * 4755 2901 * * 1479 * 4794 * * * * * 5399 13
+ 79 4739 5958 2313 324 * 0 4865 1084 1202
+
+I 14 3847 * * * 4633 * * 1572 4276 3810 * * * * * 3886 2263 3953 * 3467 14
+ 0 * * * * 824 1201 4812 0 1399
+
+F 15 4468 * 3835 3302 4784 * * * 1743 * * 2796 * 2618 5852 3009 * * * * 15
+ 0 * * * * * 0 5114 0 1143
+
+D 16 4557 * 1318 2237 * 4053 * * 3773 * 5617 3633 * 5155 * 3607 * * * * 16
+ 179 3103 * 2254 339 0 * 5114 1419 1143
+
+L 17 * * * * * * * * * 0 * * * * * * * * * * 17
+ 0 * * * * * * 5241 0 0
+
+R 18 * * * * * * 3310 3905 1273 3204 * 5139 * * 2476 4798 4855 * * 4991 18
+ 0 * * * * * * 5241 0 0
+
+D 19 3717 * 2440 3788 4238 5146 4387 * 2714 5136 * 4819 * 4730 3402 4558 4989 * * 3112 19
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+
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+ 66 * 4493 * * * * 5241 0 0
+
+Y 21 * * * * * * * * * * * * * * * * * * * 0 21
+ 0 * * * * * 0 5195 0 1143
+
+S 22 4748 * 5091 5078 * * * * 5265 * * 3124 * * * 1125 1715 * * * 22
+ 0 * * * * * 0 5195 0 1143
+
+G 23 * * * 5649 * 1966 * 3280 2245 * * * * 2151 5297 3415 4772 5091 * * 23
+ 0 * * * * * 0 5195 0 1143
+
+A 24 4798 * * 3558 * 4442 * 4772 2847 * * 5692 1682 5029 4072 6007 2178 * * * 24
+ 0 * * 2000 415 0 * 5195 1143 1143
+
+S 25 * * * * 3676 4136 3941 3923 * * * * 2509 * * 1241 4507 4819 * 4162 25
+ 0 * * * * * * 5241 0 0
+
+K 26 * 5368 3546 3945 1717 * * 4712 4303 2420 4991 * * * * * 4923 4121 * 3016 26
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+//
+�HHsearch 1.5
+NAME 68a5857c951cd0795a2bfc79e65a0c63
+FAM
+FILE 68a5857c951cd0795a2bfc79e65a0c63
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:21:28 2013
+LENG 88 match states, 88 columns in multiple alignment
+FILT 121 out of 1407 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9579999999999999825389989777999999999986765178898999999999866799991949999999999999998619
+>Consensus
+xxxxxxxxxlxxxFxxxdxxxxxxgxixxxelxxxlxxxxxxxxxxxxxxxxxxxxxxxxdxxxdgxixxxeFxxxxxxxxxxxxxxx
+>68a5857c951cd0795a2bfc79e65a0c63
+SELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMITTACHEFF
+>gi|60097902|ref|NP_002007.1| filaggrin [Homo sapiens]gi|84028206|sp|P20930.3|FILA_HUMAN RecName: Full=Filaggringi|56205087|emb|CAI19595.1| filaggrin [Homo sapiens]gi|260158880|gb|ACX32320.1| filaggrin [synthetic construct]
+------------------SEESDTQSVSAHGQAGPHQQSHQESTRGQsgERSGRSGSFL--------------------------YQV--
+>gi|196016045|ref|XP_002117877.1| hypothetical protein TRIADDRAFT_51129 [Trichoplax adhaerens]gi|190579546|gb|EDV19639.1| hypothetical protein TRIADDRAFT_51129 [Trichoplax adhaerens]
+------EDILMKALEVLD-QEHK-EHLTIDEITKFMTE-----YGEAFTQDELEEMKSAAVDQEKGVIYYKDYVSLLVV---------
+>gi|1396048|dbj|BAA12908.1| troponin C [Chlamys nipponensis akazara]
+---EKQISDAKQAFCNFD-KKKE-GTVSCKDLGAIFKS-----LGLVMKDDKIKDWSDEVDEEATGRLSCEQWLKLFEWKLKE-----
+>gi|242033981|ref|XP_002464385.1| hypothetical protein SORBIDRAFT_01g017320 [Sorghum bicolor]gi|241918239|gb|EER91383.1| hypothetical protein SORBIDRAFT_01g017320 [Sorghum bicolor]
+---EDELIYIRAQYNLLE-PDSGDGRICIDNFSTALLQN----CTDAMKESRTLEILNALEPLAYRRMDFEEFCAATISPYQ------
+>gi|66808853|ref|XP_638149.1| EF-hand domain-containing protein [Dictyostelium discoideum AX4]gi|74996819|sp|Q54MZ4.1|MCFB_DICDI RecName: Full=Mitochondrial substrate carrier family protein Bgi|60466585|gb|EAL64637.1| EF-hand domain-containing protein [Dictyostelium discoideum AX4]
+----------------------------MSNNNNNNNN-----NNNNNNNNNN----NNNNNNNNDKNNNNNIDSSIK----------
+>gi|220908286|ref|YP_002483597.1| Calcium-binding EF-hand-containing protein [Cyanothece sp. PCC 7425]gi|219864897|gb|ACL45236.1| Calcium-binding EF-hand-containing protein [Cyanothece sp. PCC 7425]
+-KLYATQMAWWENLRAATDKDNN-GQVTLEEWSAFWEAWLTSV---ANEAATgqtpsleaikgsAAVTFDMIDSNQDGQVTSDEYASWFQTLN-------
+>gi|334328558|ref|XP_001367800.2| PREDICTED: calpain-12 [Monodelphis domestica]
+---SAPLDFdLEQLFHELA---GEEEAISTAQLQALLSLALEPgdwgsswTHPPGeIGFRTCEQLIHCFGqRG--HCLTLPEFQQLWYRL--------
+>gi|241711501|ref|XP_002413417.1| Ca2+ sensor, putative [Ixodes scapularis]gi|215507231|gb|EEC16725.1| Ca2+ sensor, putative [Ixodes scapularis]
+---------MLRRYKGFV-KDCPSGHLTEQGFLRIYKL----FFPQGDPSKFTSLIFRVFDENKVRLFSYQWFLrwrPVVLLLCVS-----
+>gi|195012466|ref|XP_001983657.1| GH15448 [Drosophila grimshawi]gi|193897139|gb|EDV96005.1| GH15448 [Drosophila grimshawi]
+---EESKRRLGLIVDRID-ADKN-VFITLAELKAWIQY-----TQRRYIDEDVSRIWRQHNPDNNKTISWDVYRKSIYG---------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
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+
+A 83 3516 * 2829 1832 4713 3661 * * * 3090 * 4630 * 4457 3251 4976 4899 * * * 83
+ 0 * * * * 0 * 7091 0 1142
+
+C 84 2517 2607 * * 4481 * * * * 4152 * * * 4119 * * 4132 3118 * 1598 84
+ 0 * * * * * * 6141 0 0
+
+H 85 * * 3758 * 2777 4275 2300 3827 3679 4014 * * * 4179 2405 * * * 3817 * 85
+ 0 * * * * * * 5628 0 0
+
+E 86 * * * 2892 * * * 3039 1182 * * 3618 * * 3118 * * 3236 * * 86
+ 0 * * * * * * 4399 0 0
+
+F 87 * * * * 1244 * 2876 * * 2502 * * * 3102 * * 2752 * * * 87
+ 0 * * * * * * 3156 0 0
+
+F 88 * * * * 0 * * * * * * * * * * * * * * * 88
+ 0 * * 0 * * * 2396 0 0
+
+//
+�HHsearch 1.5
+NAME 6a5d2aa2a4dfa511f1b7a6417307a0bf
+FAM
+FILE 6a5d2aa2a4dfa511f1b7a6417307a0bf
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:59:12 2013
+LENG 225 match states, 225 columns in multiple alignment
+FILT 124 out of 1363 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCHHCCCCEEEEEEC
+CCCCCCCEEECCCCEEEEEEECCCCCCEEEECCCCCEEECCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEEEECCCCCCE
+EEEEEEECCCCEEEEEEEECCCCCC
+>ss_conf PSIPRED confidence values
+9379688878995799899998963888889789999958999858999995378840444666872688750588948699944542009847999973
+8987521120378557778602356404785288621205855999999827779976999899842577321024754997899999999503457976
+9999993889888999980579839
+>Consensus
+xxxxxxpxxxxxxxGxxvxLxCxxxxxxxxxxxixWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxsLxIxxvxxxDxgxYxCxvxx
+xxxxxxxxxxxxxxxxlxvxxxxxxxPxvxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxdxgx
+ytCxvxxxxxxxxxxxxxxxxxpxx
+>6a5d2aa2a4dfa511f1b7a6417307a0bf
+EVNLQQSGTVLARPGASVRMSCKASGYSFTSYWLHWIKQRPGQGLEWIGGIYPGNRDTRYTQRFKDKAKLTAVTSANTAYMELSSLTNEDSAVYYCSIIY
+FDYADFIMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQS
+ITCNVAHPASSTKVDKKIEPRGPTI
+>gi|2707433|gb|AAB92274.1| T-cell receptor gamma chain Vg2-Jg1 [Gallus gallus]
+---------ITMSRVNT-DLKCHFKdfSGNFDNTVIHWYQQKENKAPVRMIYFTSG--RTKVNESFQRhRYRIQTIPTQRLCTLTIRNVIPDDAATYYCA
+YW-DP-RRILLQSFRLWYKAHCIRQRKFSTREL-------------------------------------------------------------------
+----------------------------
+>gi|145408204|gb|ABP65664.1| MHC class I antigen [Sus scrofa]
+----------------------------------------------------------------------------------------------------
+------------------------------------------htyqwmygcylgpdglflrgysqfgydgadyvalne--DLRSWTAADMAAQI------
+--------skrkweaadeaerm----RSYlQGRCVEWLQKYLEMGK-----------------dt--LQ--hadP-PQPPV
+>gi|194039786|ref|XP_001927231.1| PREDICTED: butyrophilin subfamily 1 member A1-like [Sus scrofa]
+HFDVIGPPEPIlAVVGEDAELPCRLSPNVSAeRMELRWFRK--KVSPAVFVRREGREQAGEQMPEYRGRVTLVEDDiAAGHVAVRIQGVKASDDGEYRCF
+FRQD-------ENYEEAIVHLKVAALGSDPQIHMEV-----QESGEIQLECTSMGWYPEP-WVQWrtPKGEEFPSMSESKSPNEEGLFTVAASVIIRDPS
+--VKNVSCYVRNLLLGQEKEVEISIPAPF-
+>gi|297295448|ref|XP_001107711.2| PREDICTED: macrophage colony-stimulating factor 1 receptor-like isoform 1 [Macaca mulatta]
+--------------------------------------------------------------------------------FTIHRAKFIQGQDYQCSALM
+GS-----RKVMSISIRLKVQKVIPGPPALTLVPEELVRIRGEAAQIVCSASNI-DVDFDVFLQHNTTKLAIPQRSDFH-DNRYQKVLTLSLGQVDFqHAG
+NYSCVASNVQGKHSTSMFFR------
+>gi|242008252|ref|XP_002424921.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis]gi|212508527|gb|EEB12183.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis]
+---KIEPVDTNVTSGQELILNCQGNGYPTPTTTWKK---STGEFL-----------GEYKDFLYDSNISIYPNGS-----LKFSKIFKENQGHYLCELKN
+E---------VGSGLSKLIYLKVNVPVYFPQKFKQIQVIQGKEAHMQCPAIGETP--IEIEWriKGQKIQENKhSRYIINKQILTDGLVSEISIPKTYRh
+DTGIFTCYATN------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 6800 0 0
+
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+
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+
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+
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+
+Q 6 3540 * 4981 3908 * 5735 5022 6114 4500 5625 6442 5908 2595 2229 4084 3996 4015 3368 * * 6
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+
+A 24 2949 6848 6868 6376 3128 5083 5913 3376 * 3182 7158 6854 5322 7003 * 4729 4503 2187 * 3006 24
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+ 198 3884 4046 1087 918 1452 657 10471 2058 1374
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+G 26 4283 7109 3036 4354 6445 1633 * * 4714 4852 * 3564 4969 4113 4392 3597 4639 6696 * 6689 26
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+
+Y 27 4187 5698 5504 4967 3289 3751 4312 4362 3978 3726 * 5061 4041 4882 4620 3887 4043 6033 6659 2852 27
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+
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+W 33 4086 * 4565 5192 6713 4973 6443 3717 4738 4892 4611 4536 5271 4705 4932 2927 2804 3184 5578 3560 33
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+
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+
+I 37 * * 6599 5864 2768 * 5607 3852 4182 3599 5216 6772 * 4865 4091 4577 3566 4864 4841 1869 37
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+
+K 38 * * 5455 5551 5479 * 3997 4761 1841 4347 5088 6366 6921 3452 2217 * 4588 4009 5062 5972 38
+ 284 4907 2784 1139 873 1492 634 10586 1630 1677
+
+Q 39 5142 * 3384 4985 * 4112 5094 5756 3701 4010 5891 3906 * 1976 4506 4410 5463 3763 5532 4239 39
+ 67 6381 4898 0 * 3414 142 10321 1020 4199
+
+R 40 4514 * 2909 4295 5570 4470 6274 5147 2617 4939 * 3868 4067 4457 3240 4251 3785 4896 * 5008 40
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+
+P 41 4914 * 3060 3762 4959 4104 6649 5598 3480 4935 6847 3270 2118 6580 5440 3928 4337 4697 * * 41
+ 90 5058 5052 1885 456 1016 984 10377 1345 4039
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+
+Q 43 4150 6499 3661 2843 * 3289 5686 5340 3072 4859 * 4018 6883 3410 3538 3956 4047 4679 * * 43
+ 16 * 6460 * * 2051 399 10536 0 2593
+
+G 44 2968 * 3875 3258 6583 2918 * 6321 4271 5218 6706 4024 3198 4297 6084 3056 3597 7016 * 6750 44
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+
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+
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+ 31 6496 6600 0 * 1438 665 10209 1003 5030
+
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+
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+
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+
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+
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+ 0 * * * * 2437 295 10683 0 1821
+
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+
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+
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+
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+
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+ 43 6695 5680 2585 263 1491 634 10735 1000 1441
+
+A 92 2442 * 4017 * * 860 7179 * 5813 6345 * * 5804 6785 4869 4180 5599 5084 * * 92
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+
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+ 0 * * * * * 0 10632 0 1222
+
+C 96 * 216 * * 6692 * * 6709 * 4800 * * * * 7091 5633 5095 5207 * * 96
+ 25 5857 * 4921 48 * 0 10632 1272 1222
+
+S 97 3162 5757 4923 3341 6634 5920 5607 4231 5083 3601 5564 5409 * 3545 2719 3990 4207 2982 * * 97
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+
+I 98 2078 6761 7171 * 5102 5790 6804 4163 4889 3787 5756 4587 * * 4180 6653 4612 1511 * 6410 98
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+
+I 99 4824 6741 4871 3665 4473 4973 5246 4306 3842 4470 4119 4627 5533 4669 3746 3482 3762 4265 3639 4482 99
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+ 53 6493 5316 0 * 2742 234 10275 1006 2996
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+//
+�HHsearch 1.5
+NAME 6dc27b301d7556991a74587deb3a9692
+FAM
+FILE 6dc27b301d7556991a74587deb3a9692
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:24:35 2013
+LENG 232 match states, 232 columns in multiple alignment
+FILT 135 out of 1524 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEEC
+CCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCC
+CCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
+>ss_conf PSIPRED confidence values
+9089887848996799899998961788888679999968999847999980478604456668857999614675378998035304572799999851
+5887542201531132110012342014770775310027742899997378889983999998991725784002117538958998899996110002
+89988999999089868999994898988979
+>Consensus
+xxxvxxpxxxxxxxGxxvxLxCxxxxxxxxxxxixWxkxxxxxxxxxxxxxxxxxxxxxxxxxxxRxxxxxxxxxxxxsLxIxxvxxxDxgxYxCxvxxx
+xxxxxxxxxxxxxxxlxVxxxxxxxpxxxxxxxxxxxxxxxxxxxlxCxxxgxxpxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxsxlxixxxxxxx
+xxxxxxtCxvxxxxxxxxxxixxxxxxxxxPx
+>6dc27b301d7556991a74587deb3a9692
+EVQLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPH
+DTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMA
+GTDEHVVCKVQHPNGNKEKNVPLPVIAELPPK
+>gi|62464905|gb|AAX83161.1| immunoglobulin heavy chain variable region [Aotus nancymaae]
+--------------GDPVPHLRCLWLLHRQ-------willeldpPAPKGRG--WSGldisivwWVHql-QRLPQES-----sh---YFSRHVQEPVLVE
+---------AE-LCDRR-----------------------------------------------------------------------------------
+---------------------------------------------------
+>gi|241177585|gb|ACS66861.1| MHC class II antigen beta chain [Amblyrhynchus cristatus]
+----------------------------------------------------------------------------------------------------
+---------YGVYEPFARKRLVQPKMSITPAEHDSSSQKT----LLICDVAGFWPSGINITWLRNGKEEEGtKVMTTDLIRNGDwTFQIQVMLETKAEWG
+-----DVYACQVEHPSFPTPARVQWEPQSD----
+>gi|296485480|gb|DAA27595.1| butyrophilin-like 9 [Bos taurus]
+EIRVVGhEEPILAHVGDEVEFSCHLSPYRDAqHMEILWFWSQASNV-VHLYREQQEFYGWQMKQFQNRTQLIRDdIIDGSVTLRLHLVVPADQGLYGCRF
+LS---S----DFTGEATWELEVAGLGSDPHISIEGF------KEGGIQLRCHSNGWYPKP-QAQWRDRHGRCLPPETENITEDVQGLFSLETSVVVQEGA
+H----SNVS-CSIQNhlLGQKKEFVVHIADV------
+>gi|56207974|emb|CAI21226.1| novel immune-type receptor 9, allele 1 [Danio rerio]
+-------------SGDSVSLTCTVlNQKCVGNHSMYWLIIESQDYRPRIISTHGTPVDQCEWISDADFRAL----RCVYSFSRKDFRLSNSATYSCTVTA
+--CG---EKLDRNVSKLDIDADST-Ee-MMILVLLS----------------------------------------------------------------
+----------------------------------
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+------------------------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAAQN------
+----------tqrkweaagvaeqw----RAYLeGECLEWLRRYLEKGK--------------------et--LQ--raePs-SQSTIPI
+>gi|309362790|emb|CAP27555.2| CBR-SYG-2 protein [Caenorhabditis briggsae AF16]
+QLFLESPSNLSTIAGESITFRCAAEKSPEPIVYSQW-KSNTGS---LLGY----HQEGVLPGHQGRFSYVKQN-AEELHLKITHVNLDDDGEYECQMLHP
+EEG-----PIRAKAFLNIL---VPPQLVYFSnyqPNSVIAVKENTPLNITCVVPNVKPDPQ-VSWYMDGKVMSRDVKQASMPHLNKTFTVYTSLVIQPGR
+S--DHGKIVTCEVVQKETETRITTNTTLDVLFPPS
+>gi|221330930|ref|NP_001137898.1| CG42256, isoform F [Drosophila melanogaster]gi|220902492|gb|ACL83253.1| CG42256, isoform F [Drosophila melanogaster]
+--------------------vaknpaaeikytallqvKGSVLAYPS--QKLN-TEHK-KRKPHKYRshllskl-----K-------------------LS
+QCSLTLAA----slkp----FI------------------------------------------------------------------------------
+------------------------------------------------------------
+>gi|326678203|ref|XP_001337469.4| PREDICTED: hypothetical protein LOC797033 [Danio rerio]
+-----------VKEGDSVTLNSGLTE-VKDTDLILWwF--RDEDTLIAEINVTTDSTFVFDDVLDGRFRDRLKLDNKTGSLTITDAGTEHDGDYKLLIIG
+---AKWAVDWF----SVSVC-AHLRFPVISRNssqCSSSSSSSV-QYCSVLCSVVNVN--HATLSWYKENSLLSSISVSDFSI------SLSLPLEV---
+EY--QDNNTYSCVIDNpfSNltQLLNISQLCRTCSD----
+>gi|269115798|gb|ACZ26466.1| Down syndrome cell adhesion molecule [Litopenaeus vannamei]
+---IVEPADKAFALGSDARLECKADGFPRPTLGWKK---AAGHTP----------GDYRDLDVNNpNIKVTDDG-----TLHISSIQKSHEGYYLCEANN
+---G------IGAGLSTVIY-VRVQAPPQFKIQYRNQTARHGDDAVLECEAGGETP--IGILWSKDKHSVDQAAePRYTIREEMRGGSVHSSLSIKTTDR
+--TDSAVYTCIATNAFGSADTNINLIIQERPEQ-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+E 1 4621 * 3092 1786 * * 4206 * 4707 * * * 4319 1873 3561 * * 4271 * * 1
+ 0 * * * * * * 6824 0 0
+
+V 2 4294 * * * 4978 * * 2317 * 2108 5429 * 5296 4132 * 5261 3803 2020 * 4849 2
+ 0 * * * * * * 8116 0 0
+
+Q 3 4024 * 6069 3169 5620 5677 5528 4132 3390 4609 5605 * 5342 3803 4128 4632 2579 2863 * 4708 3
+ 28 * 5716 * * * * 8762 0 0
+
+L 4 6018 * 4857 * 4943 * * 2573 5137 1969 4280 * 5144 5762 * * 4389 1645 * * 4
+ 22 6038 * 1832 476 0 * 9205 1198 1005
+
+Q 5 6329 * 5367 2786 * 6295 * 4796 5000 4233 5168 5283 5418 2911 6254 2901 2139 3502 6263 * 5
+ 18 * 6355 * * * * 9569 0 0
+
+Q 6 3160 * 5374 2925 6234 4590 5398 5521 4377 6225 * 4715 4649 1869 5119 4029 4438 3833 * 6328 6
+ 628 1503 * 50 4884 * 0 9596 4549 1000
+
+W 7 4023 * 4889 3938 6315 4768 6448 * 5359 4679 * * 1142 4289 * 3186 3509 * 6222 * 7
+ 0 * * * * 0 * 9766 0 1000
+
+G 8 3822 * 4512 3733 * 3418 6191 5402 4615 5340 * 4945 2658 3392 4280 2823 4303 3999 * 5530 8
+ 78 4933 5657 406 2028 * * 9820 1303 0
+
+A 9 4879 * 3170 3622 5626 4909 4387 4732 6864 5268 6202 3535 4153 3636 4824 2525 4164 4462 5208 5244 9
+ 45 5792 6298 0 * 0 * 9869 1028 1128
+
+G 10 4433 * * * 7160 5069 * 3184 4156 2466 5187 5600 5595 3966 6694 4260 4353 1656 * 6794 10
+ 0 * * * * * 0 9979 0 1021
+
+L 11 6644 * 5502 4112 6414 5442 5198 3413 4709 4012 5080 4709 5591 6568 4977 2918 2061 3393 6776 4412 11
+ 11 7047 * 0 * 0 * 10047 1000 1021
+
+L 12 2262 5303 * * 5151 3992 5678 4279 4657 4471 5642 * 5722 * 4640 5759 3607 1632 * 5862 12
+ 0 * * * * * * 10120 0 0
+
+K 13 4426 * 5046 4459 5978 5269 5916 4937 3095 3801 4641 4069 3603 4436 4267 3046 3345 3492 6741 * 13
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+
+P 14 3669 * 7065 2286 * 5815 * 4761 3903 3113 5819 6325 3863 4826 4519 3223 4744 2838 * 6674 14
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+
+S 15 * * 4490 4837 6983 448 * * 6152 6788 * 4746 * 5120 5501 4572 7249 6714 * 6634 15
+ 0 * * * * * * 10336 0 0
+
+E 16 3790 * 2821 2277 * 3490 5659 * 3638 5765 * 4265 * 3292 5417 2752 5102 6924 6791 * 16
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+
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+
+L 18 2304 * * * 5525 5783 6937 3245 * 3561 5837 * * * * * 5274 1009 * 5704 18
+ 0 * * * * 475 1834 10279 0 1321
+
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+ 0 * * 1585 585 0 * 10340 1000 1000
+
+L 20 7186 * * * 3348 * 7096 2331 * 819 4486 * * * * * * 4048 6895 6897 20
+ 0 * * 4087 87 * * 10336 1000 0
+
+T 21 * * 4160 3438 5998 5723 5440 7157 4073 4537 6949 3492 2550 4922 3439 3305 2925 4381 * 6516 21
+ 0 * * * * * * 10493 0 0
+
+C 22 7093 142 * * 6651 8149 6765 6671 * * * * 6516 * 5845 6704 * 7105 6829 * 22
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+
+A 23 5058 7092 3492 4894 6885 4523 4581 5040 3273 4217 * 3739 4647 4197 3528 2832 3464 4361 7101 5993 23
+ 32 5494 * 793 1241 0 * 10487 1433 1000
+
+V 24 3116 6807 6920 5653 2882 5793 6877 3437 * 2877 6962 5824 4765 * * 4407 4174 2326 * 3435 24
+ 88 5232 4933 380 2111 * * 10493 1350 0
+
+Y 25 4539 * 4599 3939 5983 4544 4648 4422 3897 4781 6637 3760 4515 4751 4899 2216 2925 5014 6997 5805 25
+ 301 3690 3170 1467 648 926 1078 10288 2249 1487
+
+G 26 3321 6942 4109 3933 6823 1715 7031 5093 5805 5122 5822 4379 4342 3658 5226 3250 4779 * * 6826 26
+ 105 5741 4285 2174 361 1599 578 10308 1376 3284
+
+G 27 5343 6466 4576 4739 3198 3721 4424 5153 3610 4161 6756 3986 3650 5550 5577 2675 4026 6732 6578 4178 27
+ 105 6316 4110 0 * 88 4079 10173 1152 3236
+
+S 28 5351 6584 4046 4193 5941 5323 5286 5497 3930 4413 * 4071 2116 3875 5169 3043 3767 4200 * 6265 28
+ 137 5869 3769 2566 267 1161 855 10405 1229 1986
+
+F 29 4086 6562 4777 4001 3602 4721 4674 3968 4144 3326 7031 5715 2966 5103 4475 4103 4074 3735 * 5028 29
+ 486 4949 1979 1020 980 1197 827 10304 1738 2919
+
+S 30 4790 6260 3308 4000 * 3095 * * 3226 3403 * 3702 4077 4240 4027 3077 4029 4689 * * 30
+ 92 4727 5380 409 2018 5136 42 10054 1358 5686
+
+D 31 4352 6507 2162 4756 6104 3833 3855 4401 5356 3937 * 3446 4810 5002 4947 3784 3920 4925 * 5264 31
+ 372 2276 5598 1229 802 156 3284 9828 3556 5795
+
+Y 32 5294 * 4186 6091 4138 5030 6616 3776 5159 3246 6665 3858 2512 5519 4698 4339 3483 4931 * 3123 32
+ 27 5754 * 0 * 1083 921 10455 1194 1835
+
+Y 33 5115 * 4656 5294 5441 6892 7028 4441 4750 4862 4674 4620 5438 3880 4343 3068 2405 3226 6836 3245 33
+ 44 5523 6871 985 1016 * 0 10461 1286 1375
+
+W 34 5931 * * * 4206 6724 * 1763 6590 2500 4266 * * * * 6963 5415 1687 4500 * 34
+ 10 * 7197 * * * 0 10456 0 1519
+
+S 35 4324 * 6729 3613 3445 4881 4217 4811 3960 3635 * 4656 * 4035 3623 3232 3715 4889 7541 3389 35
+ 34 6779 6123 0 * 2445 293 10322 1004 1634
+
+W 36 * * * * 5294 * * 5869 5873 5913 * * * * * * * 5567 182 5562 36
+ 146 4681 4131 1882 457 2847 216 10257 1492 1778
+
+I 37 * 6408 5960 4681 2552 * 4972 4334 3361 3432 * 5566 6626 4648 4984 4704 4406 5088 5835 1965 37
+ 42 * 5130 3000 193 1700 531 10355 1052 2732
+
+R 38 * 6482 * 7873 4293 * 3750 5073 1555 4384 6732 5003 6770 3161 2277 6034 * * 4829 5441 38
+ 392 7098 2118 1585 585 1025 975 10295 1006 2644
+
+Q 39 5025 * 4422 3401 4406 3782 5070 5333 4255 4116 5530 5084 * 1644 7068 3831 4733 4894 6478 6361 39
+ 81 5081 5334 1241 794 3025 189 9891 1306 5195
+
+P 40 5507 6352 3124 4804 6634 4326 5065 3671 2719 5120 5385 3705 4495 5609 3361 3536 3634 6315 * 5370 40
+ 126 6641 3763 3807 107 1746 511 9891 1016 4994
+
+P 41 4489 * 3111 3765 4963 3903 6963 * 3132 5198 6517 3689 2142 5066 4962 3826 4665 5613 * 6553 41
+ 77 6550 4592 0 * 1746 511 10171 1014 4887
+
+G 42 6526 * 2812 3181 * 1807 * 6531 4172 * * 3915 5105 3421 5221 4503 4235 5010 4982 6806 42
+ 12 6868 * 1585 585 695 1387 10134 1010 4340
+
+K 43 4522 * 3084 3688 6083 3450 4506 6728 2873 5406 * 3927 4566 3304 4736 3375 4026 4768 * * 43
+ 56 * 4714 * * * 0 10317 0 2355
+
+G 44 3327 * 4830 3089 5745 2554 5784 5622 5466 3637 5251 4721 3740 4331 5794 3716 3365 5286 * 6404 44
+ 111 4597 4922 836 1185 * 0 10316 1512 2981
+
+L 45 5569 6413 5034 4548 4581 5957 6561 3729 5294 2200 6544 4459 2276 5049 4978 4211 5282 3399 * 6972 45
+ 13 * 6783 * * 1776 498 10222 0 3540
+
+E 46 5257 * 4088 3039 6974 4490 6008 3794 3847 4222 6978 4937 4338 2716 3888 4094 3248 4142 * * 46
+ 26 * 5804 * * 2625 255 10293 0 2988
+
+W 47 3346 * 4776 5863 3425 5732 6598 4046 5063 2431 5810 5067 7029 5186 3731 3603 4405 4796 3993 3975 47
+ 32 * 5499 * * * 0 10250 0 2949
+
+I 48 5374 6633 6836 4767 3839 6553 6748 2623 6842 1816 5120 6868 3472 5012 * 4269 5609 3082 * 5234 48
+ 108 6575 4027 1000 1000 2865 213 10235 1020 3289
+
+G 49 3082 5901 5893 5695 4313 3266 * 2243 5365 3296 * 6889 6885 4961 4687 4314 3763 3605 * 4521 49
+ 43 6196 5977 2807 222 * 0 10183 1186 3892
+
+E 50 4012 * 4527 4847 3126 6495 4757 4072 4597 5735 6695 4312 6832 5895 4949 2823 3672 4966 4593 2586 50
+ 517 * 1730 * * 3461 137 10160 0 4231
+
+I 51 5997 4870 * 6417 2853 4026 5269 2944 5498 3375 5203 5107 * 5349 6494 3729 3519 2783 6600 4205 51
+ 332 2579 4713 423 1977 * 0 9485 2752 6809
+
+N 52 3981 5827 3587 5153 3140 4458 4466 6115 4017 4554 6929 3188 6399 5229 4527 3107 3894 6351 * 3483 52
+ 71 5189 5593 1000 1000 2590 262 9414 1201 7131
+
+H 53 * * 4202 3350 6481 2722 6263 6176 3760 6363 5396 3266 4451 5477 3817 3044 3323 3812 * 6290 53
+ 440 * 1927 * * 4605 61 9638 0 6647
+
+S 54 3679 * 3463 3909 6235 2287 * 6204 3344 6167 * 4765 5505 4362 5156 2675 3679 4909 * 5861 54
+ 33 * 5471 * * 1128 882 9110 0 7759
+
+G 55 5242 * 3908 5770 * 1932 4132 4792 3446 6214 * 4180 5211 3467 4282 2934 4496 * * 5103 55
+ 78 6069 4723 0 * 1971 425 9944 1018 5658
+
+S 56 5457 6395 3695 3395 4168 3558 6710 5677 5913 5011 6398 3969 4262 3303 4536 2829 3096 4738 * 6897 56
+ 59 7061 4930 0 * 4140 84 10107 1000 5088
+
+T 57 3942 * 4321 4160 5132 4082 4526 5284 3168 4264 * 5672 3487 5540 3977 2945 3675 3634 * 5236 57
+ 100 4191 6346 2297 328 5143 41 10070 1782 5230
+
+N 58 4175 * 5698 4084 5492 4303 5160 4562 3947 4335 * 3421 5323 3350 3750 3720 3701 2898 * 5004 58
+ 137 4199 4781 2151 368 4176 82 10042 1703 5253
+
+Y 59 4760 5316 6545 3916 3618 5397 5460 4392 4258 4749 * 6106 6299 4217 3975 3436 6849 2671 6495 2456 59
+ 0 * * * * 1740 513 10074 0 5377
+
+N 60 3721 * 3119 3108 5019 4549 5158 5219 4708 4667 5588 3553 3779 5524 4685 3002 4265 5469 6338 4801 60
+ 28 6741 6706 1000 1000 3629 122 10212 1016 4292
+
+P 61 5270 6499 3142 2767 5811 2516 6500 5591 5083 3951 * 4324 2825 5849 * 2936 * 6573 5401 6497 61
+ 62 5352 5835 757 1293 3588 125 10206 1325 4213
+
+S 62 4473 * 3733 3087 5768 2725 5749 5201 4148 4725 * 4093 3927 4195 3799 3254 4659 4126 * * 62
+ 125 4514 4683 208 2896 3603 124 10192 1765 4194
+
+L 63 4104 * 6451 5049 2945 4980 5638 4133 4388 3481 6689 5683 3650 5399 6939 4358 4241 3325 * 2457 63
+ 56 5143 6725 1582 587 2719 238 10139 1460 4415
+
+K 64 4493 6839 3136 3806 5511 3616 6524 * 2389 4678 6698 3746 4548 4070 3517 3708 4333 * * 5858 64
+ 107 3808 * 639 1482 699 1381 10193 2099 4073
+
+S 65 3218 * 2934 3250 * 2314 6928 * 3740 6989 * 3583 4207 5804 4526 3241 4590 5765 * * 65
+ 86 4541 6066 852 1165 2158 366 10401 1836 2229
+
+R 66 7340 6684 4448 * 5893 6454 5163 4617 4134 5881 * 4801 5665 4278 696 5661 5895 7264 * * 66
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+
+V 67 3269 * * 6855 1640 4989 5250 3559 * 3663 5771 7320 7308 * 5872 6431 4704 2844 6843 3330 67
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+
+T 68 5442 * 5130 4798 6116 5926 4954 5844 3895 4920 6740 5313 5895 3343 3478 1935 2882 4055 5288 6758 68
+ 14 * 6645 * * 1999 415 10421 0 2250
+
+I 69 3603 6817 6685 7331 3492 3981 7162 2477 * 2042 3869 * 4587 5866 6586 5212 6885 3312 6895 5102 69
+ 37 7193 5751 0 * 2741 234 10281 1000 2090
+
+S 70 5034 * 4197 3791 4261 * 5323 5171 4419 3169 * 4345 5637 4445 3672 2433 3241 4237 5836 5337 70
+ 233 6866 2830 0 * 2956 199 10416 1000 2255
+
+V 71 4201 7453 3684 5217 4060 3190 4760 * 3310 4862 6857 3712 3551 4412 3319 4533 4819 4024 5700 5901 71
+ 91 7262 4203 0 * 4448 68 10205 1000 4158
+
+D 72 5643 * 2181 3108 6074 6798 5395 5090 3730 4151 5885 3092 4121 4278 5718 4457 4210 4827 6206 5370 72
+ 477 5027 1997 293 2443 1095 911 10132 1455 4696
+
+T 73 4294 * 3699 4012 6647 3105 6441 5197 3674 3528 * 3260 3276 4516 5279 3856 3494 4852 * 6569 73
+ 682 4858 1547 2338 318 2181 360 9886 1323 5862
+
+S 74 4188 * 3120 2172 * 4310 * 4880 4300 3972 5775 4987 6338 4933 5945 2230 4884 4288 * * 74
+ 50 6169 5630 0 * 844 1175 9441 1017 7395
+
+K 75 4370 * 5444 3818 6398 2932 6580 5371 3349 3975 5668 3289 4077 3487 3829 3323 4076 6688 6831 * 75
+ 14 6654 * 1000 1000 4763 54 10030 1000 4715
+
+N 76 5168 6243 3539 4151 6638 2737 4093 * 3903 5571 * 4053 * 4084 3384 2601 3507 4964 6590 * 76
+ 91 4277 6696 466 1858 4797 53 10066 1672 4603
+
+Q 77 4545 * 3058 4082 4634 5817 6512 4990 3794 6277 * 2586 4631 3923 3359 4441 2828 4820 * * 77
+ 28 6891 6529 0 * 1301 751 10169 1000 4612
+
+F 78 2641 3567 * 6296 3120 3482 6997 5081 * 4115 6965 5039 5154 * 7332 2649 6170 3760 5854 3239 78
+ 17 6429 * 0 * 250 2654 10260 1004 3431
+
+S 79 3560 * 5937 7171 5295 7090 5301 5151 6615 5449 6549 5425 4700 4406 3771 1636 2463 4118 * 5719 79
+ 0 * * 0 * 0 * 10486 1000 1299
+
+L 80 * 6566 * 6623 5243 * * 3446 * 325 5982 * * * * * * 5074 6840 6863 80
+ 0 * * * * * * 10497 0 0
+
+K 81 5243 * 5131 4151 6002 5387 4602 3669 3185 3933 5746 4292 * 3557 3545 3951 2550 4352 6027 6151 81
+ 10 * 7117 * * * * 10497 0 0
+
+L 82 * * 7422 * 4771 * * 834 6844 2322 5547 6746 6673 * 6667 6638 * 3084 6703 * 82
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+
+S 83 4438 * 5188 4124 6983 5039 5328 5645 3326 3738 7048 4882 4317 4302 3399 2274 2974 7102 * 4930 83
+ 0 * * * * * 0 10355 0 1052
+
+S 84 4383 6737 2614 5437 5721 3401 3898 * 3963 * * 2357 4419 4325 3695 3401 5347 * * 5438 84
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+
+V 85 2453 * 6825 6965 4806 5246 * 3125 * 2466 5519 * 5206 * * 5732 5340 1513 * * 85
+ 0 * * * * * 0 10321 0 1186
+
+T 86 7104 * 5860 3443 6045 5790 5571 5862 3306 5569 7017 5927 5800 1765 3261 3431 2834 7083 6805 * 86
+ 0 * * * * * 0 10321 0 1186
+
+A 87 4783 6868 6969 3472 7013 * * 4657 3566 2334 5024 7083 2551 4441 3645 4831 4037 4179 4613 * 87
+ 0 * * * * * 0 10321 0 1186
+
+A 88 3625 * 4075 1991 * 3823 * * 4286 5154 * 4326 6887 3439 5939 2326 4166 5855 6883 6587 88
+ 23 5994 * 920 1085 * 0 10321 1286 1186
+
+D 89 5843 * 388 5539 * 5098 4191 * 6852 * * 5236 * 4799 5866 6030 * 6701 * * 89
+ 0 * * * * * 0 10321 0 1186
+
+T 90 2635 * 4300 2660 * 4996 7457 5319 4461 * 5044 5420 * 3927 6881 1985 3465 5866 * 4864 90
+ 0 * * * * 697 1384 10321 0 1186
+
+A 91 2393 6677 4901 * * 731 6871 * 6005 6863 * * 6579 5929 4879 4286 6766 6644 * * 91
+ 0 * * * * * 0 10377 0 1000
+
+V 92 5111 5808 5106 4154 4522 5930 4737 3706 4496 3376 4602 4881 7354 5884 5019 5283 2217 2777 5101 6863 92
+ 23 6813 7120 0 * 0 * 10377 1017 1000
+
+Y 93 * 5852 * * 3167 * 6906 6811 * 6921 * * * * 6564 * * 5129 * 310 93
+ 8 * 7422 * * 0 * 10355 0 1052
+
+Y 94 4648 6677 * 3896 3907 6568 5312 3847 5018 3972 6834 5717 * 3464 3684 3930 2521 4826 4651 3244 94
+ 0 * * * * 0 * 10507 0 1023
+
+C 95 * 132 * * 5784 * 6677 * * 5619 * * * * * 6644 5658 6707 * * 95
+ 0 * * * * * * 10377 0 0
+
+A 96 2917 6644 4545 3091 5662 4704 5906 4862 4381 4477 4489 5201 * 3332 3544 4442 4211 3077 * 5640 96
+ 24 * 5924 * * * * 10377 0 0
+
+R 97 2352 5628 * * 5764 5461 7055 2930 4739 3756 5850 5611 * 6648 4872 5152 5687 1569 6845 5835 97
+ 92 * 4017 * * * 0 10299 0 1154
+
+P 98 4912 * 4092 3624 4768 5110 * 4286 3723 4184 5164 4064 5667 5054 3425 3299 3717 4111 3701 4777 98
+ 69 4773 6636 264 2582 3367 147 10266 1509 2411
+
+P 99 4129 * 4002 4289 4596 4438 4488 5651 4663 4384 5342 2047 4872 4893 4798 4207 4149 3777 * 4791 99
+ 2376 * 309 * * * 0 10197 0 2416
+
+H 100 4464 * 4588 3482 * 2923 4458 * 3253 * * 3344 3340 4362 * 4214 2353 4449 * * 100
+ 442 4464 2194 1000 1000 * 0 6678 1000 9050
+
+D 101 3167 * 2977 1990 * 3232 * 2507 3991 * * * 4270 * * * * 3150 * * 101
+ 0 * * * * 2836 218 5899 0 9178
+
+T 102 4974 4591 * 2692 * 2264 * * * 3452 * 2380 5190 5016 * 5066 2892 * 4122 * 102
+ 51 * 4856 * * 987 1013 7843 0 8706
+
+S 103 5142 * 5421 5193 * 1418 4960 6256 5412 4444 * 3663 4848 6356 4209 2235 5141 6463 * * 103
+ 1349 * 719 * * 3933 98 9767 0 6276
+
+G 104 4971 * 2821 3400 4942 2541 * * 5133 4759 * 5187 3289 * 2899 3390 4977 * * 3812 104
+ 430 4010 2355 0 * 3891 101 7866 1172 8703
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+//
+�HHsearch 1.5
+NAME 6e235e11f9c330891bd4a7eac552e81b
+FAM
+FILE 6e235e11f9c330891bd4a7eac552e81b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:02:52 2013
+LENG 187 match states, 187 columns in multiple alignment
+FILT 10 out of 12 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 2.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCEEEEE
+EEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEHHHEEEEEEEEECCC
+>ss_conf PSIPRED confidence values
+9417433045643457512341165317767586663796464248999987776776389717999991799989864899998863267988378999
+987457888856744245898787307874788986688324463258867999999867754242799998054333478740179
+>Consensus
+MfQxfvsKHxxxxxxapfssxxxxxxxtPaxxxpVvxtxxixxxrstxxxxxsxtaxtxxxGxfxxxxxxDxsxpxxnqVxSvxasLSfxvxsxxixxxV
+RFExaxxxxxtxxpxxxdxyPiexxxxsgxaxSxrDcvTidxhprtxGNnVyvGvxxxSxxwtagxvxGxiSxxQVxxExtvLQPLK
+>6e235e11f9c330891bd4a7eac552e81b
+MYQNFVTKHDTAIQTSRFSVTGNVIPAAPTGNIPVINGGSITAERAVVNLYANMNVSTSSDGSFIVAMKVDTSPTDPNCVISAGVNLSFAGTSYPIVGIV
+RFESASEQPTSIAGSEVEHYPIEMSVGSGGVCSARDCATVDIHPRTSGNNVFVGVICSSAKWTSGRVIGTIATTQVIHEYQVLQPLK
+>gi|2493330|sp|Q38042.1|G_BPPHK RecName: Full=Major spike protein G; AltName: Full=G protein; AltName: Full=GPGgi|1478127|emb|CAA42892.1| G [Enterobacteria phage phiK]
+MYQIFVTKHDTAIQTSRFSVTGSITPVAPTGNIPVINTGNI--taEHAVVSLYANLTAGTSSDGSFIVAMKVDTSPADPNCVISAGVNLSFAGTSYPIVG
+IVRFESASDQPTSIags---QIEHYPIEMSv-GSGGVCSARDCVTVDIHPRAFGNNVFVGVICSSAKWTSGRVLGTIATTQVIREYQVLQPLK
+>gi|71842816|gb|AAZ49017.1| gpG [Enterobacteria phage NC28]
+MFQVYVSKH-----VAPFTSKNRAFSIAPAANPQVVNSGEI--vaGRSTFRIASSIASAVNGSG-FAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYIPC
+VVRFEDNAAQPTDFdia---TADFIPVEVSa-ISPRALSVRDCVTVDVKPRTQGNNVFVGVVFFSASANAGNVTGVVSMAQVDHEVTALQPLK
+>gi|71842783|gb|AAZ48987.1| gpG [Enterobacteria phage NC35]
+MFQVYVSKH-----VSPFTSMNRAFGITPSSNPTVVNSGEI--qaGRSTFRIASSIGAASNGQG-FAFVQMMDPYSPDNQQVFSVAASLSFSVDSNYVPC
+VIRFETASTQPTNIdvs---TADFIPLESSa-LSARALSVRDCVTVDVKPRIEGNNVFVGVVFCSAGASAGNVTGAVSMAQVDHEVTALQPLK
+>gi|71842861|gb|AAZ49058.1| gpG [Enterobacteria phage NC29]
+MFQVYVAKH-----VAPFTSMNRTFSISPAAAPQVVNSGEI--vaGRSTFRIASSIGSASNGNG-FAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYVPC
+VVRFESSFSQPGQFaia---EADFIPVESSa-LSARALSVRDCVTVDVKPRAEGNNVFVGLFLSSAAANAGNVTGVISMAQVDHEVTALQPLK
+>gi|89888617|ref|YP_512377.1| gpG [Enterobacteria phage ID2 Moscow/ID/2001]gi|71842750|gb|AAZ48957.1| gpG [Enterobacteria phage ID2 Moscow/ID/2001]
+MFQKFIKKH-----NAPLTSQpAISKAVTPSMTaAPLVTTPL-GVSSTQLFLELTTTAAA--GG-FAYAIRVDNSNPTDNQVFSVCAHItS-DVDPKYIA
+CLVRFEVTAGTTPTAMPPVYDAYPIA-GYYDAGSYTVEDCATIPTHAVSSGNDVYVGLMLFSRMWPVAKLSGIASLNQVNKEVTVLQPLK
+>gi|71843197|gb|AAZ49366.1| gpG [Enterobacteria phage NC6]
+MFQKFISKH-----NAPISSTQVTVTETPAATAPILGVP--GLSRSTIQINVTTTAVTTHSG-LCHVVRIDETNPTNHHALSVAGSLS-HVSADMIAFAI
+RFEVADGFVPTAVPTLYDVYPIE-IVNTGKAISFKDVVTIDSHPRTVGNDVYAGIMLWSNAWSATTTSGVLSVNQVNREATVLQPLK
+>gi|71843149|gb|AAZ49322.1| gpG [Enterobacteria phage ID41]
+MFQKFISKH-----NAPINSTQLAATKTPAVTAPVLSVP--DLSRSTIQINATTTAVTTHSG-LCHVVRIDETNPTNHHALSIAGSLS-NVPADMIAFAI
+RFEVADGVVPTAVPALYDVYPIE-TFNNGKAISFKDAVTIDSHSRTVGNDVYAGIMLWSNAWTASTISGVLSVNQVNREATVLQPLK
+>gi|71843221|gb|AAZ49388.1| gpG [Enterobacteria phage WA14]
+MFQTYLSKH-----NSPLTSQSITATKTPAAAAPIISTP--ELSRSTIFAGLTLTAATTHSG-VAHVVRIDETNPTDNQVLSVAASLS-GVPSDAIAIAI
+RFEVADGTVPTALPALYSAYPVE-FFTSGAALSCKDAVSIPTHPVTAGNDVYAGILIWSKSWAAGVVSGLLSVNQVNRETTVLQPLK
+>gi|304269275|gb|ADM16612.1| protein G [Enterobacteria phage phiX174]
+MFQTFISRHN----SNFFSDKLVLTSVTPASSAPVLQTP--KATSSTLYFD-SLTVNAGNGG-FPHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLV
+RFESSS--VPTTLPTAYDVYPLN-GRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSN-FTATKCRGLVSLNQVIKEIICLQPLK
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 2517 0 0
+
+Y 2 * * * * 393 * * * * * * * * * * * * * * 2067 2
+ 0 * * * * * * 2517 0 0
+
+Q 3 * * * * * * * * * * * * * 0 * * * * * * 3
+ 0 * * * * * * 2517 0 0
+
+N 4 * * * * * * * 3135 1776 * * 3002 * * * * 2165 2021 * * 4
+ 0 * * * * * * 2517 0 0
+
+F 5 * * * * 603 * * * * * * * * * * * * * * 1549 5
+ 0 * * * * * * 2517 0 0
+
+V 6 * * * * * * * 1253 * 3391 * * * * * * * 1044 * * 6
+ 0 * * * * * * 2517 0 0
+
+T 7 3604 * * * * * * * 3103 * * * * * * 829 2067 * * * 7
+ 0 * * * * * * 2517 0 0
+
+K 8 * * * * * * * * 197 * * * * * 2970 * * * * * 8
+ 0 * * * * * * 2517 0 0
+
+H 9 * * * * * * 0 * * * * * * * * * * * * * 9
+ 1449 * 658 * * * * 2517 0 0
+
+D 10 * * 735 * * * * * * * * 1324 * * * * * * * * 10
+ 735 * 1325 * * * 0 1596 0 1811
+
+T 11 * * * * * * * * * * * * * * * * 0 * * * 11
+ 0 * * * * * 0 1085 0 1994
+
+A 12 0 * * * * * * * * * * * * * * * * * * * 12
+ 0 * * * * * 0 1085 0 1994
+
+I 13 * * * * * * * 0 * * * * * * * * * * * * 13
+ 0 * * * * * 0 1085 0 1994
+
+Q 14 * * * * * * * * * * * * * 0 * * * * * * 14
+ 0 * * * * 0 * 1085 0 1994
+
+T 15 * * * * * * * * * * * 1368 * * * 2970 2067 2021 * * 15
+ 0 * * * * * * 2517 0 0
+
+S 16 1134 * * * * * * * * * * 2970 * * * 1263 * * * * 16
+ 0 * * * * * * 2517 0 0
+
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+
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+ 0 * * * * * * 2517 0 0
+
+S 19 * * * * * * * * * * * 3493 * * * 1142 1126 * * * 19
+ 0 * * * * * * 2517 0 0
+
+V 20 * * 2970 * * * * * * * * * * * * 658 * 2067 * * 20
+ 0 * * * * * * 2517 0 0
+
+T 21 * * * * * * * * 2258 * 2600 * * 2240 * * 1271 * * * 21
+ 178 3103 * 0 * * * 2517 1027 0
+
+G 22 3103 * * * * 2067 * * * 2970 * 2021 * 2509 * 3391 * * * * 22
+ 0 * * * * * * 2517 0 0
+
+N 23 * * * * * * * 2240 * 3493 * 3002 * * 2021 3135 * 2221 * * 23
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+
+V 24 1983 * * * * * * 3135 * 2970 * * * * * 3103 1919 3002 * * 24
+ 0 * * * * * * 2517 0 0
+
+I 25 2441 * * * 2021 * * 3002 3103 * * * * * * * 2050 3525 * * 25
+ 0 * * * * * * 2517 0 0
+
+P 26 3103 * * * * 3595 * * * * * * 2067 * * 1780 1883 * * * 26
+ 0 * * * * * * 2517 0 0
+
+A 27 3002 * * 3525 * * * 2021 2441 * * * * * * * * 1483 * * 27
+ 0 * * * * * * 2517 0 0
+
+A 28 1644 * * * * * * * * * * * * * * 3604 742 * * * 28
+ 0 * * * * * * 2517 0 0
+
+P 29 * * * * * * * * * * * * 0 * * * * * * * 29
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+
+T 30 831 * * * * * * * * * * * * * * 2328 2067 * * * 30
+ 0 * * * * * * 2517 0 0
+
+G 31 1532 * * * * 2067 * * * * 3103 * * * * 2249 * 3493 * * 31
+ 0 * * * * * * 2517 0 0
+
+N 32 2493 * * * * * * * * * * 1312 * * * 2970 1776 * * * 32
+ 178 3103 * 0 * * * 2517 1027 0
+
+I 33 957 * * * * * * 2067 * * * * 2021 * * * * * * * 33
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+P 34 * * * * * * * * * * * * 408 2612 * * 3595 * * * 34
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+V 35 * * * * * * * 2456 * 3103 * * * * * * * 512 * * 35
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+I 36 * * * * * * * 1582 * 1721 * * * * * * * 1463 * * 36
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+N 37 * * * * * 3525 * * * * * 1044 * 2970 * 2441 3103 * * * 37
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+G 39 * * * * * 1044 * * * * * * 957 * * * * * * * 39
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+
+S 40 * * * 1347 * * * * * 2022 * 2538 * * * 2407 * * * * 40
+ 408 * 2022 * * * 0 2043 0 1463
+
+I 41 * * * * * * * 0 * * * * * * * * * * * * 41
+ 1982 * 421 * * 0 * 1663 0 1636
+
+T 42 * * 3029 2855 * 1809 * * 2459 * * * * * * * 1878 * * * 42
+ 0 * * * * * 0 2242 0 1403
+
+A 43 1139 * * * * * * * * 1389 * * * * * * * 2606 * * 43
+ 0 * * 1000 1000 0 * 2242 1403 1403
+
+E 44 * * * 2067 * 2021 * * * * * * * * * 1368 2970 * * * 44
+ 0 * * * * * * 2517 0 0
+
+R 45 * * * * * * 3135 * * * * * * * 639 2035 * * * * 45
+ 0 * * * * * * 2517 0 0
+
+A 46 2067 * * * * * * * * * * * * * * 633 3103 * * * 46
+ 0 * * * * * * 2517 0 0
+
+V 47 * * * * * * * * * * * * * 3103 * * 633 2067 * * 47
+ 0 * * * * * * 2517 0 0
+
+V 48 * * * * 2021 * * 1883 * 2035 * * * * * * * 2067 * * 48
+ 0 * * * * * * 2517 0 0
+
+N 49 * * * * 2240 * * * * * * 3002 * 2509 2021 3135 * * * 2970 49
+ 0 * * * * * * 2517 0 0
+
+L 50 3391 * * * 2970 * * 1245 * 1494 * * * * * * * * * * 50
+ 0 * * * * * * 2517 0 0
+
+Y 51 2021 * 2970 3103 * 3391 * * * * * 2509 * * * * * * * 2067 51
+ 197 * 2970 * * * * 2517 0 0
+
+A 52 1430 * * * * * * * * 1999 * * * * * 1844 * 3321 * * 52
+ 0 * * * * 0 * 2367 0 1046
+
+N 53 * * * * * * * * * * * 2067 * * * 1419 1368 * * * 53
+ 0 * * * * * * 2517 0 0
+
+M 54 * * * * * * * 2021 * 1570 3002 * * * * * 1776 * * * 54
+ 0 * * * * * * 2517 0 0
+
+N 55 3620 * * * * 2600 * * * * * 3002 * * * * 669 * * * 55
+ 0 * * * * * * 2517 0 0
+
+V 56 776 * * * * * * * * * * * * * * 2612 * 1986 * * 56
+ 0 * * * * * * 2517 0 0
+
+S 57 1126 * * * * 3135 * * * * * 2970 * * * 3002 * 2509 * * 57
+ 0 * * * * * * 2517 0 0
+
+T 58 2035 * * * * * * * * * * * * * * 2600 972 3620 * * 58
+ 178 * 3103 * * * * 2517 0 0
+
+S 59 * * * * * 2714 * * * * * 1878 * * * 1938 1669 * * * 59
+ 0 * * * * * 0 2405 0 1027
+
+S 60 * * * * * 1878 1669 * * * * 2714 * * * 1938 * * * * 60
+ 0 * * * * 0 * 2405 0 1027
+
+D 61 * * 2067 * * 2035 * * * * * 3604 * 3595 * 1505 * * * * 61
+ 0 * * * * * * 2517 0 0
+
+G 62 * * * * * 0 * * * * * * * * * * * * * * 62
+ 2067 * 393 * * * * 2517 0 0
+
+S 63 * * * * * * * * * * * * * * * 0 * * * * 63
+ 0 * * * * 0 * 1085 0 1994
+
+F 64 * * * * 456 * * * * 2509 * * * * * * * 3391 * * 64
+ 0 * * * * * * 2517 0 0
+
+I 65 1126 2509 * * * * * 2067 * * * * 2970 * * * * * * * 65
+ 0 * * * * * * 2517 0 0
+
+V 66 * * * * 2021 * 1327 * * * * * * * * * * 2067 * 3103 66
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+
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+ 0 * * * * * * 2517 0 0
+
+M 68 * * * * * * * 2035 * * 2067 * * 2021 * * * 1883 * * 68
+ 0 * * * * * * 2517 0 0
+
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+ 0 * * * * * * 2517 0 0
+
+V 70 * * * * * * * 1883 * * 1419 * * * * * * 1494 * * 70
+ 0 * * * * * * 2517 0 0
+
+D 71 * * 0 * * * * * * * * * * * * * * * * * 71
+ 0 * * * * * * 2517 0 0
+
+T 72 * * * 1883 * * * * * * * 3103 2021 * * * 1449 * * * 72
+ 0 * * * * * * 2517 0 0
+
+S 73 * * * * * * * * * * * 2612 * * * 1051 1883 * * 3595 73
+ 0 * * * * * * 2517 0 0
+
+P 74 * * * * * * * * * * * 1368 2067 * * 2021 * 2970 * * 74
+ 0 * * * * * * 2517 0 0
+
+T 75 3135 * * * * * * * * * * 2970 658 * * * 3002 * * * 75
+ 0 * * * * * * 2517 0 0
+
+D 76 2970 * 1044 * * * * * * * * * * * * * 1368 * * * 76
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+
+P 77 2970 * 2240 * * * * * * * * 1952 2067 * * 2612 * * * * 77
+ 0 * * * * * * 2517 0 0
+
+N 78 * * * * * * 2509 * * * * 791 * 2021 * * * * * * 78
+ 0 * * * * * * 2517 0 0
+
+C 79 * 2067 * * * * 2509 * * * * * * 772 * * * * * * 79
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+
+I 81 * * * * 1463 * * 2067 * 1883 * * * * * * * 2970 * * 81
+ 0 * * * * * * 2517 0 0
+
+S 82 * * * * * * * * * * * * * * * 0 * * * * 82
+ 0 * * * * * * 2517 0 0
+
+A 83 2067 * * * * * * 3493 * * * * * * * * * 572 * * 83
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+
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+
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+ 0 * * * * * * 2517 0 0
+
+L 87 * * * * * * * 2035 * 404 * * * * * * * * * * 87
+ 178 3103 * 0 * * * 2517 1027 0
+
+S 88 2970 * * * * * * * * * * * * * * 197 * * * * 88
+ 707 * 1368 * * * * 2517 0 0
+
+F 89 * * * * 0 * * * * * * * * * * * * * * * 89
+ 0 * * * * 0 * 2021 0 1445
+
+A 90 2067 * 2035 * * 3391 3525 * * * * 3493 * * * 2021 * * * * 90
+ 0 * * * * * * 2517 0 0
+
+G 91 2970 * * * * 2067 * * * * * * * * * * * 658 * * 91
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+
+T 92 * * 1028 * * * * * * * * * 2441 * * 3525 2067 * * * 92
+ 0 * * * * * * 2517 0 0
+
+S 93 2509 * * * * * * * * * * * 2035 * * 785 * * * * 93
+ 0 * * * * * * 2517 0 0
+
+Y 94 * * 1883 * * * * * 2035 * * 2021 * * * * * * * 2067 94
+ 0 * * * * * * 2517 0 0
+
+P 95 3391 * * * 2970 * * * * * 2509 * 2067 * * * * * * 1463 95
+ 0 * * * * * * 2517 0 0
+
+I 96 * * * * 2970 * * 499 * * * * * * * * * 2600 * * 96
+ 0 * * * * * * 2517 0 0
+
+V 97 957 * * * * * * * * * * * 2021 * * * * 2067 * * 97
+ 0 * * * * * * 2517 0 0
+
+G 98 * 1028 * * 2509 2067 * 3391 * * * * * * * * * * * * 98
+ 0 * * * * * * 2517 0 0
+
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+ 0 * * * * * * 2517 0 0
+
+V 100 * * * * * * * 1499 * * * * * * * * * 630 * * 100
+ 0 * * * * * * 2517 0 0
+
+R 101 * * * * * * * * * * * * * * 0 * * * * * 101
+ 0 * * * * * * 2517 0 0
+
+F 102 * * * * 0 * * * * * * * * * * * * * * * 102
+ 0 * * * * * * 2517 0 0
+
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+ 0 * * * * * * 2517 0 0
+
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+ 0 * * * * * * 2517 0 0
+
+A 105 755 * * * * * * * * * * 3620 * * * 2252 3103 * * * 105
+ 0 * * * * * * 2517 0 0
+
+S 106 2338 * 1883 * 3604 * * * * * * * * * * 1155 * * * * 106
+ 197 * 2970 * * * * 2517 0 0
+
+E 107 3445 * 2949 2821 * 1151 * * * * * * * * * 3429 3413 * * * 107
+ 0 * * * * * 0 2367 0 1046
+
+Q 108 * * * * 3321 * * * * * * * * 864 * * 1999 3319 * * 108
+ 0 * * * * 0 * 2367 0 1046
+
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+ 0 * * * * * * 2517 0 0
+
+T 110 * * * * * 3604 * * * * * * 957 * * * 1312 * * * 110
+ 0 * * * * * * 2517 0 0
+
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+ 0 * * * * * * 2517 0 0
+
+I 112 1368 * * * 2612 * * 1638 * * * * * * * * 2970 * * * 112
+ 644 1473 * 1585 585 * * 2517 1403 0
+
+A 113 1878 * * * * * * * * 1643 2606 * * * * * * 2037 * * 113
+ 0 * * * * * 0 2242 0 1403
+
+G 114 * * * * * 1878 * * * * * * 458 * * * * * * * 114
+ 0 * * * * * 0 2242 0 1403
+
+S 115 1939 * * * * * * * * * * * 2606 * * 1878 1723 * * * 115
+ 0 * * * * 0 * 2242 0 1403
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+ 0 * * * * * * 2517 0 0
+
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+ 0 * * * * * * 2517 0 0
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+ 0 * * * * * * 2517 0 0
+
+H 119 2240 * * * 2021 * 2067 * * * * * * * * * * 1721 * * 119
+ 0 * * * * * * 2517 0 0
+
+Y 120 * * * * * * * 2021 * * * * * * * * * * * 408 120
+ 0 * * * * * * 2517 0 0
+
+P 121 * * * * * * * * * * * * 0 * * * * * * * 121
+ 0 * * * * * * 2517 0 0
+
+I 122 * * * * * * * 914 * 2249 * * * * * * * 1949 * * 122
+ 0 * * * * * * 2517 0 0
+
+E 123 3103 * * 404 * * * * * * * 2970 * * * * * * * * 123
+ 1044 * 957 * * * * 2517 0 0
+
+M 124 * * * * * * * * * * 1070 * * * * 1510 * 2534 * * 124
+ 0 * * * * 0 * 1663 0 1636
+
+S 125 * * * * 3391 2035 * 3525 * * * * * * * 1044 3493 * * * 125
+ 644 1473 * 0 * * * 2517 1403 0
+
+V 126 * * * * 1939 * * * * * * * * * 2459 * * 1347 * 2606 126
+ 0 * * * * 0 * 2242 0 1403
+
+G 127 * * * * * 2067 2970 3620 * 2600 * 2509 * * * * 3391 * * 3103 127
+ 0 * * * * * * 2517 0 0
+
+S 128 * * 2035 * * * * * * * * 3493 * * * 785 3525 * * * 128
+ 0 * * * * * * 2517 0 0
+
+G 129 1830 * * * * 650 * * * * * * 3620 * * * * * * * 129
+ 0 * * * * * * 2517 0 0
+
+G 130 3391 * * * * 1051 * * 2509 * * * * * 2021 * * * * * 130
+ 0 * * * * * * 2517 0 0
+
+V 131 951 * * * * * * * * * * * * * * 3103 * 2067 * 2970 131
+ 0 * * * * * * 2517 0 0
+
+C 132 * 2067 * * * * * 2509 * 1549 * * * * * * * * * 2035 132
+ 0 * * * * * * 2517 0 0
+
+S 133 * * * * * * * * * * * * * * * 404 2035 * * * 133
+ 0 * * * * * * 2517 0 0
+
+A 134 2067 3391 * * 2509 * * * * * * * * * * * * 1028 * * 134
+ 0 * * * * * * 2517 0 0
+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
+S 147 3391 * * 2600 3135 * * * * * * * 2970 3620 * 2052 * 2509 * * 147
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+
+G 148 * * * * * 0 * * * * * * * * * * * * * * 148
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+
+N 149 * * * * * * * * * * * 0 * * * * * * * * 149
+ 0 * * * * * * 2517 0 0
+
+N 150 * * 1368 * * * * * * * * 707 * * * * * * * * 150
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+
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+
+F 152 * * * * 1044 * * * * * * * * * * * * * * 957 152
+ 0 * * * * * * 2517 0 0
+
+V 153 1883 * * * * * * * * * * * * * * * * 456 * * 153
+ 0 * * * * * * 2517 0 0
+
+G 154 * * * * * 0 * * * * * * * * * * * * * * 154
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+
+V 155 * * * * 2970 * * 1883 * 2332 * * * * * * * 1312 * * 155
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+
+I 156 * * * * 3604 * * 2067 * 3391 1253 * * * * * * 2607 * * 156
+ 0 * * * * * * 2517 0 0
+
+C 157 * 2067 * * 2607 * * 3391 * 1418 * * * * * * * 2970 * * 157
+ 0 * * * * * * 2517 0 0
+
+S 158 * 3595 * * 2338 * * * * * * * * * * 1640 * * 1327 * 158
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+
+S 159 * * * * * * * * * * * * * * * 0 * * * * 159
+ 0 * * * * * * 2517 0 0
+
+A 160 1044 * * * * * * * 3391 * * 1721 * * 3103 * * * * * 160
+ 197 * 2970 * * * * 2517 0 0
+
+K 161 1771 * * * * 3413 * * 1884 * 2819 * * * * 2319 * * * * 161
+ 0 * * * * 0 * 2367 0 1046
+
+W 162 2021 * * * 2970 * * * * * * * * * * * * * 676 * 162
+ 0 * * * * * * 2517 0 0
+
+T 163 3391 * * * * * * * * * * 2612 3103 * * 2560 1136 * * * 163
+ 0 * * * * * * 2517 0 0
+
+S 164 633 * * * * * * * * * * * * * * 2067 * 3103 * * 164
+ 0 * * * * * * 2517 0 0
+
+G 165 3103 * * * * 785 * * * * * * * * * 3493 2221 * * * 165
+ 0 * * * * * * 2517 0 0
+
+R 166 * * * * * * * * 2035 * * 2021 * * 2067 * 2509 3391 * * 166
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+
+V 167 * 2970 * * * * * 3493 * 3103 * * * * * * 3525 785 * * 167
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+
+I 168 * * * * * * * 3002 * 3135 * * * * 2970 1368 2021 * * * 168
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+
+G 169 * * * * * 0 * * * * * * * * * * * * * * 169
+ 0 * * * * * * 2517 0 0
+
+T 170 3595 * * * * * * 3103 * 2165 * * * * * * 2067 1559 * * 170
+ 0 * * * * * * 2517 0 0
+
+I 171 3103 * * * * * * 1640 * 1883 * * * * * * * 1777 * * 171
+ 0 * * * * * * 2517 0 0
+
+A 172 2067 * * * * * * * * * * * * * * 393 * * * * 172
+ 0 * * * * * * 2517 0 0
+
+T 173 * * * * * * * * * 2035 2021 * * * * * 2067 1883 * * 173
+ 0 * * * * * * 2517 0 0
+
+T 174 2021 * * * * * * * * * * 957 * * * * 2067 * * * 174
+ 0 * * * * * * 2517 0 0
+
+Q 175 * * * * * * * * * * * * * 0 * * * * * * 175
+ 0 * * * * * * 2517 0 0
+
+V 176 * * * * * * * * * * * * * * * * * 0 * * 176
+ 0 * * * * * * 2517 0 0
+
+I 177 * * 2021 * * * * 1449 * * * 1368 * * * * * * * * 177
+ 0 * * * * * * 2517 0 0
+
+H 178 * * * * * * 1430 * 2035 * * * * * 1378 * * * * * 178
+ 0 * * * * * * 2517 0 0
+
+E 179 * * * 0 * * * * * * * * * * * * * * * * 179
+ 0 * * * * * * 2517 0 0
+
+Y 180 2509 * * * * * * 2970 * * * * * * * * 3391 1463 * 2067 180
+ 0 * * * * * * 2517 0 0
+
+Q 181 * * * * * * * 2970 * * * * * 2067 * * 658 * * * 181
+ 0 * * * * * * 2517 0 0
+
+V 182 2021 2970 * * * * * * * * * * * * * * * 676 * * 182
+ 0 * * * * * * 2517 0 0
+
+L 183 * * * * * * * * * 0 * * * * * * * * * * 183
+ 0 * * * * * * 2517 0 0
+
+Q 184 * * * * * * * * * * * * * 0 * * * * * * 184
+ 0 * * * * * * 2517 0 0
+
+P 185 * * * * * * * * * * * * 0 * * * * * * * 185
+ 0 * * * * * * 2517 0 0
+
+L 186 * * * * * * * * * 0 * * * * * * * * * * 186
+ 0 * * * * * * 2517 0 0
+
+K 187 * * * * * * * * 0 * * * * * * * * * * * 187
+ 0 * * 0 * * * 2517 0 0
+
+//
+�HHsearch 1.5
+NAME 6f8bf45e3bf355ef54d788898343cb1c
+FAM
+FILE 6f8bf45e3bf355ef54d788898343cb1c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:41:56 2013
+LENG 65 match states, 65 columns in multiple alignment
+FILT 16 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEC
+>ss_conf PSIPRED confidence values
+97533343444179999966303257888878889999999870578640887246656788109
+>Consensus
+xxxxxxxxxxxxtykLiinxxtxxxtteAvdAatAekxfKxYaNxngVdGeWtYddatkTFTvTE
+>6f8bf45e3bf355ef54d788898343cb1c
+MHHHHHHAMDTYKLVIVLNGTTFTYTTEAVDAATAEKVFKQYANDNGVDGEWTYADATKTFTVTE
+>gi|24159073|pdb|1MI0|A Chain A, Crystal Structure Of The Redesigned Protein G Variant Nug2gi|24159074|pdb|1MI0|B Chain B, Crystal Structure Of The Redesigned Protein G Variant Nug2
+------------TYKLVIVLNGTTftYTTEAVDAATAEKVFKQYANDNGVDGEWTYADATKTFTVTE
+>gi|198443040|pdb|2JWS|A Chain A, Solution Nmr Structures Of Two Designed Proteins With 88% Sequence Identity But Different Fold And Function
+------------TYKLILNLKQAKeeAIKELVDAGIAEKYIKLIANAKTVEGVWTLKDEILTFTVTE
+>gi|119389519|pdb|2FS1|A Chain A, Solution Structure Of Psd-1
+-------------------meavdans------LAQAKEAAikelkqygIGDYYIKLINNAKTVEGVESLKNEIL------
+>gi|64174789|gb|AAY41168.1| protein G/SspDnaE fusion protein [Expression vector pJJDuet30]
+----------HMQYKLILNGKTLKgeTTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTYTVTE
+>gi|195977828|ref|YP_002123072.1| IgG binding protein Zag [Streptococcus equi subsp. zooepidemicus MGCS10565]gi|195974533|gb|ACG62059.1| IgG binding protein Zag [Streptococcus equi subsp. zooepidemicus MGCS10565]
+-----------SevidaaeltpaltSYKLVIKGATFSgeTATKAVDAAVAEQTFRDYANKNGVDGVWAYDAATKTFTVTE
+>gi|195977828|ref|YP_002123072.1| IgG binding protein Zag [Streptococcus equi subsp. zooepidemicus MGCS10565]gi|195974533|gb|ACG62059.1| IgG binding protein Zag [Streptococcus equi subsp. zooepidemicus MGCS10565]
+-----------TTYRLVIKGVTFSgeTATKAVDAATAEQTFRQYANDNGITGEWAYDTATKTFTVTE
+>gi|15824801|gb|AAL09476.1|AF354651_1 Mig precursor [Streptococcus dysgalactiae]
+------------TYKLIVKGNTFSgeTTTKAVDAETAEKAFKQYATANNVDGEWSYDDATKTFTVTE
+>gi|313885225|ref|ZP_07818977.1| B domain protein [Eremococcus coleocola ACS-139-V-Col8]gi|312619916|gb|EFR31353.1| B domain protein [Eremococcus coleocola ACS-139-V-Col8]
+---------------LVVNSEDAQITSEytASSVELAGQYFRDYVNNNGLgDLEWSYDPATYTFTATD
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+H 2 * * * * * * 0 * * * * * * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+H 3 * * * * * * 0 * * * * * * * * * * * * * 3
+ 0 * * * * * * 1000 0 0
+
+H 4 * * * * * * 0 * * * * * * * * * * * * * 4
+ 0 * * * * * * 1000 0 0
+
+H 5 * * * * * * 0 * * * * * * * * * * * * * 5
+ 0 * * * * * * 1000 0 0
+
+H 6 * * * * * * 0 * * * * * * * * * * * * * 6
+ 0 * * * * * * 1000 0 0
+
+H 7 * * * * * * 0 * * * * * * * * * * * * * 7
+ 0 * * * * * * 1000 0 0
+
+A 8 0 * * * * * * * * * * * * * * * * * * * 8
+ 0 * * * * * * 1000 0 0
+
+M 9 * * * * * * * * * * 0 * * * * * * * * * 9
+ 0 * * * * * * 1000 0 0
+
+D 10 * * 0 * * * * * * * * * * * * * * * * * 10
+ 0 * * * * * * 1000 0 0
+
+T 11 * * * * * * 1000 * * * * * * * * * 1000 * * * 11
+ 0 * * * * * * 1178 0 0
+
+Y 12 * * * * * * * * * * 2379 * * * * 2250 1383 * * 2224 12
+ 341 2250 * 3700 115 * * 1454 1000 0
+
+K 13 * * * * * * * * 3729 * * * * 4272 * 3632 336 * * * 13
+ 0 * * * * * * 1806 0 0
+
+L 14 * * * * 2948 * * * * 3729 * * * * * * * * * 331 14
+ 0 * * * * * * 1806 0 0
+
+V 15 * * * * * * * * 241 * * * * * 3673 * * 3729 * * 15
+ 0 * * * * * * 1806 0 0
+
+I 16 * * * * * * * 3899 * 100 * * * * * * * * * * 16
+ 0 * * * * * * 2026 0 0
+
+V 17 * * * * 3920 * * 1022 * * * * * * * * * 1179 * * 17
+ 0 * * * * * * 2026 0 0
+
+L 18 * * * * * * * 1334 * 1341 * * * * * * * 2261 * * 18
+ 0 * * * * * * 2026 0 0
+
+N 19 * * * * * * * * 2378 * * 536 * * * * * 3086 * * 19
+ 0 * * 3000 193 * * 2026 1050 0
+
+G 20 * * * * * 834 * 3920 * 2164 * * * * * 2737 * * * * 20
+ 0 * * * * * * 2026 0 0
+
+T 21 3902 * * 2737 * 3920 * * 1081 * * 3181 * * * * 3899 3901 * * 21
+ 0 * * * * * * 2026 0 0
+
+T 22 * * 2210 * * 4274 * * * * * * * 2544 * * 834 * * * 22
+ 0 * * * * * * 2026 0 0
+
+F 23 1637 * * * 1947 * * * * 1730 * * * * 3920 * 4274 * * * 23
+ 0 * * * * * * 2026 0 0
+
+T 24 * * * * * * * * 1081 * * * * 2737 * 2378 3075 3920 * * 24
+ 2204 353 * 1000 1000 * * 2026 1500 0
+
+Y 25 2544 * * * * * * 2319 * * * * * * * * 1174 3920 * 3075 25
+ 0 * * * * * * 2026 0 0
+
+T 26 3106 * * * * * * 2895 * 3135 * * * * * * 654 * * * 26
+ 0 * * * * * * 2218 0 0
+
+T 27 3135 * * * * * * 4475 2895 * * * * * * 2816 824 * * * 27
+ 0 * * * * * * 2218 0 0
+
+E 28 * * * 558 * * * * 2273 * * * * 3135 * * * * * * 28
+ 221 2816 * 1000 1000 * * 2218 1050 0
+
+A 29 208 * * * * * * * * 2895 * * * * * * * * * * 29
+ 0 * * * * * * 2218 0 0
+
+V 30 * * * * * * * * 3135 * * * * * * 2816 * 426 * * 30
+ 0 * * * * * * 2218 0 0
+
+D 31 * * 426 3135 * * * * * * * * * * * 2816 * * * * 31
+ 0 * * * * * * 2218 0 0
+
+A 32 221 * * * * * * * * * * * * * * * * 2816 * * 32
+ 0 * * * * * * 2218 0 0
+
+A 33 645 * * 1832 * 3651 * * * * * * * * * * * * * * 33
+ 174 3135 * 3000 193 * * 2218 1050 0
+
+T 34 * * * 4475 * * * 2370 * 2816 * * * * * * 834 4092 * * 34
+ 0 * * * * * * 2218 0 0
+
+A 35 174 * * * * 3135 * * * * * * * * * * * * * * 35
+ 0 * * * * * * 2218 0 0
+
+E 36 * * 3135 426 * 2816 * * * * * * * * * * * * * * 36
+ 0 * * * * * * 2218 0 0
+
+K 37 * * * * * * * * 786 * * * * 1954 4377 * * * * 3135 37
+ 0 * * * * * * 2218 0 0
+
+V 38 3461 * * * * * * 4475 * * * * * * * * 3106 1483 * 1357 38
+ 0 * * * * * * 2218 0 0
+
+F 39 * * * * 402 * * 2370 * 4331 * * * * * * * * * * 39
+ 0 * * * * * * 2218 0 0
+
+K 40 * * * * * * * * 431 * * * * * 1954 * * * * * 40
+ 0 * * * * * * 2218 0 0
+
+Q 41 * * 2318 4377 * * 4101 * * 2010 * * * 1169 * * * * * * 41
+ 0 * * * * * * 2218 0 0
+
+Y 42 * * * * * * * 2370 * * * * * * * * * * * 310 42
+ 0 * * * * * * 2218 0 0
+
+A 43 526 * * * * * * 4331 * * * 3135 * * * * * 2816 * * 43
+ 0 * * * * * * 2218 0 0
+
+N 44 * * * * * * * * 4377 * * 157 * * * * 4178 * * * 44
+ 0 * * * * * * 2218 0 0
+
+D 45 1720 * 1360 4101 * * * * 3228 * * 2816 * * * * * * * * 45
+ 0 * * * * * * 2218 0 0
+
+N 46 * * * * * * 4101 * 2010 * * 528 * * * * * * * * 46
+ 0 * * * * * * 2218 0 0
+
+G 47 * * * * * 522 * * * * * 4178 * * * * 2010 * * * 47
+ 0 * * * * * * 2218 0 0
+
+V 48 * * * * * * * 2716 * 2816 * * * * * * * 502 * * 48
+ 221 2816 * 0 * * * 2218 1050 0
+
+D 49 * * 653 2010 * * 4101 * * * * * * * * * 4121 * * * 49
+ 0 * * * * * * 2218 0 0
+
+G 50 * * * * * 221 * * * 2816 * * * * * * * * * * 50
+ 0 * * * * * * 2218 0 0
+
+E 51 * * * 739 * * 4101 * * * * * * * * * * 1546 * * 51
+ 0 * * * * * * 2218 0 0
+
+W 52 * * * 3135 * * * * * * * * * * * * * * 174 * 52
+ 0 * * * * * * 2218 0 0
+
+T 53 3106 * * * * * * * * * * * * * * 1685 804 * * * 53
+ 0 * * * * * * 2218 0 0
+
+Y 54 * * * * * * * * * 2370 * * * * * * * * * 310 54
+ 0 * * * * * * 2218 0 0
+
+A 55 3333 * 616 * * * * * 2010 * * * * * * * * * * * 55
+ 0 * * * * * * 2218 0 0
+
+D 56 4092 * 811 * * * * * * * * 3135 2320 * * * 4121 * * * 56
+ 0 * * * * * * 2218 0 0
+
+A 57 528 * * 1706 * * * * * * * * * * * * * * * * 57
+ 0 * * * * * * 2218 0 0
+
+T 58 3941 * * * * * * 2370 * * * * * * * * 432 * * * 58
+ 0 * * * * * * 2218 0 0
+
+K 59 * * * * * * * * 589 2370 * * * * * * * * * 2816 59
+ 0 * * * * * * 2218 0 0
+
+T 60 * * * * * * * * * * * * * * * * 0 * * * 60
+ 0 * * * * * * 2026 0 0
+
+F 61 * * * * 152 * * * * * * * * * * * * * 4171 4498 61
+ 0 * * * * * * 2026 0 0
+
+T 62 * * * * * * * * * * * * * * * * 0 * * * 62
+ 0 * * * * * * 2026 0 0
+
+V 63 2737 * * * * * * * * * * * * * * * * 234 * * 63
+ 0 * * * * * * 2026 0 0
+
+T 64 * * * * * * * * * * * * * * * * 0 * * * 64
+ 0 * * * * * * 2026 0 0
+
+E 65 * * 2737 234 * * * * * * * * * * * * * * * * 65
+ 0 * * 0 * * * 2026 0 0
+
+//
+�HHsearch 1.5
+NAME 70185c53b564a6651b730e4dcf340af6
+FAM
+FILE 70185c53b564a6651b730e4dcf340af6
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:19:29 2013
+LENG 54 match states, 54 columns in multiple alignment
+FILT 104 out of 210 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCC
+>ss_conf PSIPRED confidence values
+908789898733999999998878999999999999949976999999972349
+>Consensus
+xxxxxxxxxxxxxxxxxxLxxMFPxldxxvIxxvLxxxxgxxdxaIdxLLxmsx
+>70185c53b564a6651b730e4dcf340af6
+SSLIKKIEENERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLSLSE
+>gi|281343012|gb|EFB18596.1| hypothetical protein PANDA_003683 [Ailuropoda melanoleuca]
+-RPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN-
+>gi|51535464|dbj|BAD37361.1| hypothetical protein [Oryza sativa Japonica Group]gi|222635963|gb|EEE66095.1| hypothetical protein OsJ_22122 [Oryza sativa Japonica Group]
+----------------iEVLQLIF------phedpq-lLKSFFEASGNVLDA-aIRGFKHR--
+>gi|334184040|ref|NP_001185446.1| uncharacterized protein [Arabidopsis thaliana]gi|332198229|gb|AEE36350.1| uncharacterized protein [Arabidopsis thaliana]
+------------SSSLDQLHSAFPHIELTVaskihvsvaqvLVKALEDNGSDFNAAMKSLYSF--
+>gi|330922638|ref|XP_003299915.1| hypothetical protein PTT_11019 [Pyrenophora teres f. teres 0-1]gi|311326207|gb|EFQ91994.1| hypothetical protein PTT_11019 [Pyrenophora teres f. teres 0-1]
+------------PTKELLLAETFPGLRVSQVTYTLKKCGYDYDKATDELLNQV-
+>gi|302407576|ref|XP_003001623.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]gi|261359344|gb|EEY21772.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
+------------DFQIRQLQDMFADLKTHDIQLAFKKSHG--------dfftamdsLLNTQ-
+>gi|255932461|ref|XP_002557787.1| Pc12g09600 [Penicillium chrysogenum Wisconsin 54-1255]gi|211582406|emb|CAP80587.1| Pc12g09600 [Penicillium chrysogenum Wisconsin 54-1255]
+------------ADKAQNLISMFPSITRLEAERILEDCHDNLSRSMDVLLNLA-
+>gi|255713396|ref|XP_002552980.1| KLTH0D05962p [Lachancea thermotolerans]gi|238934360|emb|CAR22542.1| KLTH0D05962p [Lachancea thermotolerans]
+----------SLSNntdgrsegegmgsrHAKALSEEnFPDENHTKARKGAVNLKKRMWRPIHSFTK---
+>gi|194667823|ref|XP_587938.4| PREDICTED: phosphonoformate immuno-associated protein 5-like [Bos taurus]gi|297475788|ref|XP_002688251.1| PREDICTED: phosphonoformate immuno-associated protein 5-like [Bos taurus]gi|296486625|gb|DAA28738.1| phosphonoformate immuno-associated protein 5-like [Bos taurus]
+--LPSVYETkVDQEELFTSVSEMFSDLDPDVVYLMLSECDFKVENAMDCLLELSA
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 2856 * 2728 * * * * * * * * * * * * 1791 1245 * * * 1
+ 0 * * * * * * 2056 0 0
+
+S 2 * * * 2047 * * * * * * * * * * 1202 2175 * 3295 * * 2
+ 0 * * * * * * 2424 0 0
+
+L 3 * * * 2289 * * * * * 743 3917 * 2926 * * * * * * * 3
+ 0 * * * * * * 3140 0 0
+
+I 4 686 * * * * 3477 * 2602 * * * * 3011 * * * * * * * 4
+ 0 * * * * * * 3494 0 0
+
+K 5 * * * 2784 * * * * 3308 * * * * 1883 1826 2317 * * * * 5
+ 0 * * * * * * 3494 0 0
+
+K 6 2845 * * 4280 * * * 4210 2171 * * * * 2794 1747 * * 3455 * * 6
+ 0 * * * * * * 3676 0 0
+
+I 7 * * * * * * * 2280 * 1603 3483 * * * * 3718 3965 2792 * 3455 7
+ 0 * * * * * * 3676 0 0
+
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+ 74 4324 * 1585 585 * * 4032 1002 0
+
+E 9 3058 * 4899 2511 * * 3762 * * * * 4490 4105 3423 1880 4102 3807 * * * 9
+ 107 3807 * 2660 249 * * 4032 1188 0
+
+N 10 3513 * * 2912 * * * * 2962 4298 * 3633 * 2096 2956 4695 4388 3822 * * 10
+ 59 4630 * 3459 138 * * 4056 1027 0
+
+E 11 4280 5131 4711 1327 * * * * * * * 4850 3732 2458 5205 2607 * * * * 11
+ 0 * * 4790 53 * * 5298 1097 0
+
+R 12 4040 * * 5280 3532 * 2588 4990 5835 3185 4348 4537 5006 3192 3956 3702 3448 5710 * 5873 12
+ 0 * * * * * * 5539 0 0
+
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+ 0 * * * * * * 6074 0 0
+
+D 14 2804 * 2778 1955 5868 5878 6289 * 5629 5604 * 3504 6015 4337 5694 3041 4189 5908 * * 14
+ 158 3266 * 2898 208 * * 6029 1423 0
+
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+ 0 * * * * * * 6070 0 0
+
+L 16 4133 * * 4046 4831 * 4793 2750 * 1650 4654 * * 6292 5197 * 5698 2306 * 4549 16
+ 19 * 6220 1638 559 * * 6030 1100 0
+
+N 17 3418 * 2909 2614 5594 6045 6828 6897 2684 4468 * 4333 * 3374 3988 3686 4589 5167 * * 17
+ 12 6857 * 2585 263 0 * 6069 1027 1001
+
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+ 28 5705 * 1585 585 * * 6088 1028 0
+
+L 19 * * * * 5124 * * 3754 * 287 4579 * * * * * * 4797 * * 19
+ 0 * * * * * * 6088 0 0
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+ 0 * * * * * * 6088 0 0
+
+N 21 2760 * 4049 1627 * 3577 * * * 5345 * 6072 6173 3995 6483 2375 4276 6281 * * 21
+ 0 * * * * * * 6088 0 0
+
+M 22 4587 * * 4697 * * * 3026 * 3848 682 * * 6636 6173 * 4290 5096 * * 22
+ 57 4697 * 0 * * * 6088 1118 0
+
+F 23 * 5870 * * 53 * * * * * * * * * * * * * * 5705 23
+ 28 * 5715 * * * * 6088 0 0
+
+P 24 5634 * * 5024 * 6586 * * * * * * 170 * * 4321 * * * * 24
+ 0 * * * * * 0 6031 0 1058
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+ 27 5772 * 0 * * 0 6031 1029 1058
+
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+ 0 * * * * * 0 6031 0 1058
+
+D 27 6295 * 733 3548 * 5672 5913 * 3623 * * 4625 6621 6435 5758 3895 4850 * * * 27
+ 0 * * * * * 0 6031 0 1058
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+P 28 4393 * 5268 3527 6653 5234 4293 6026 3336 4239 6489 5648 2797 4574 2654 3995 4442 3465 * 6670 28
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+
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+ 0 * * 2585 263 * 0 6031 1058 1058
+
+L 30 5745 * 3745 5933 * * 6820 2654 4310 2658 5669 * * 5758 * 5076 3333 1579 * 6392 30
+ 18 6317 * 2112 379 0 * 6031 1116 1058
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+I 31 4188 * * * * * * 1058 * 2385 * * * * * * * 1872 * * 31
+ 0 * * * * * * 6088 0 0
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+E 32 5827 6452 5408 1693 * 7059 6021 5828 2236 5985 * 6268 * 3458 2640 5705 4799 4726 * 6350 32
+ 0 * * * * * * 6088 0 0
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+ 0 * * * * * * 6088 0 0
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+V 34 2883 6512 * * 5715 4697 * 3540 * 4876 5573 * * * * 5435 3250 925 * * 34
+ 0 * * * * * * 6088 0 0
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+ 42 5648 6837 1824 479 * * 6088 1049 0
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+I 36 4577 * 3555 1969 5337 5477 5078 3478 3233 5250 * 6899 * 4169 3233 4423 6486 3761 * 5910 36
+ 0 * * * * 0 * 6078 0 1000
+
+A 37 1818 * 3841 2783 * 6162 * 5030 3107 6737 6502 3664 * 4356 5406 3012 4477 * * * 37
+ 0 * * * * * * 6088 0 0
+
+K 38 5787 2043 6837 * * * 4415 * 2857 4697 * 2453 * 3979 4634 2878 4827 4864 * 6059 38
+ 28 7956 6042 1585 585 * * 6088 1000 0
+
+K 39 6837 * 3044 4805 6698 2336 4852 * 2771 6640 * 2104 * 3593 3280 5869 * * * * 39
+ 20 6164 * 1950 432 * 0 6010 1103 1035
+
+S 40 5251 5655 4486 6284 4828 911 7163 * 4399 * * 2727 * 6325 * 5250 * * 7126 3676 40
+ 44 * 5054 * * 0 * 6009 0 1035
+
+R 41 4726 * 1733 6050 * * 3712 * 3528 * * 1760 * * 2993 5934 6815 5486 * 6073 41
+ 0 * * * * * 0 5994 0 1108
+
+I 42 6790 * * * 4171 * * 2740 3568 2267 2843 * * 4688 5506 * 4617 2243 5627 5550 42
+ 0 * * * * * 0 5950 0 1108
+
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+ 0 * * * * * 0 5950 0 1108
+
+P 44 2322 * 4081 5013 * * 6227 6915 3415 4002 * 3790 4246 4356 2725 3182 4887 4264 * 6497 44
+ 33 * 5482 * * * 0 5950 0 1108
+
+C 45 907 3240 * * * * * 6502 * * * * 4583 * * 3376 2445 5146 * * 45
+ 0 * * 0 * 1279 766 5937 1058 1224
+
+V 46 4982 * * * 5048 * * 947 * 4738 2948 * * * * * 5550 2113 * * 46
+ 0 * * * * * 0 5950 0 1108
+
+D 47 5864 * 1337 2775 * 6528 4270 * 3121 * 6111 2936 * 6453 4443 5817 5276 5853 * * 47
+ 0 * * * * * 0 5950 0 1108
+
+A 48 2092 4571 4269 3756 5317 5482 * 5552 5681 * 5847 6730 * 4236 5448 2038 4358 3501 * 5270 48
+ 0 * * 3000 193 0 * 5950 1108 1108
+
+L 49 * 3427 * * 3812 * * 5400 * 300 * * * * * * * * * * 49
+ 0 * * * * * * 5991 0 0
+
+L 50 * * * * * * 5657 * 5538 287 6188 4073 * * * 6251 4643 * * 6298 50
+ 0 * * * * * * 5991 0 0
+
+S 51 4408 6469 5037 1950 6414 4725 5535 * 3930 6666 6599 2380 * 2787 * 3384 4261 6571 * * 51
+ 0 * * * * * * 5995 0 0
+
+L 52 * * * * 4454 * 4832 3983 * 1346 1436 * * 4431 5389 * 6335 6581 * * 52
+ 0 * * * * * * 5697 0 0
+
+S 53 3529 5075 6289 * * 6814 * * 4710 * 6068 3250 * 3690 * 1332 3040 3218 * * 53
+ 0 * * * * * * 5429 0 0
+
+E 54 2981 * 1516 2008 * * * * * * * 4468 * * * 2892 3394 * * * 54
+ 0 * * 0 * * * 4412 0 0
+
+//
+�HHsearch 1.5
+NAME 717d981e28459396ae1133448788c53e
+FAM
+FILE 717d981e28459396ae1133448788c53e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:34:14 2013
+LENG 238 match states, 238 columns in multiple alignment
+FILT 84 out of 86 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHCHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCHHHHC
+CHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCEEEHHHEEEEEEECCHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCEEEHHHHHHHHH
+HCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9422217366378679994577787769976454458867389998469979977879999278889960899999972778873689999814888917
+6122210382440445533566444442168643788565131674230201388459997430467658937999978828888404077999999998
+47989999999840532434544557733241244569
+>Consensus
+xxxMAxxxkdlxGWxixxxdxxxxxixxxxrRxRrxxxxxxixLxRxxdxxxxxxGDsVlxkxxxxxxxxVxlIxeIxxxtxxnxvEixvxWyxrxxEix
+xxxxxxxxxPxxxxxxxrxdxxxxxxxxxxxxnELfLTxxxdeixLxxIigkaxVlSxxefxxlxxxxxxxxxFxcRxxcxxxxxxftxfdxxdxxxxix
+xxxpkxxxexlkxltxxxxxxxxkxxxxxxxxxxxxxx
+>717d981e28459396ae1133448788c53e
+AMTMAKTLKDLQGWEIITTDEQGNIIDGGQKRLRRRGAKTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVN
+PLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDVKAYIK
+KVEPREAQEYLKDLTLPSKKKEIKRGPQKKDKATQTAQ
+>gi|294656587|ref|XP_458878.2| DEHA2D09504p [Debaryomyces hansenii CBS767]gi|218511733|sp|Q6BSE2.2|ORC1_DEBHA RecName: Full=Origin recognition complex subunit 1gi|199431584|emb|CAG87030.2| DEHA2D09504p [Debaryomyces hansenii]
+---MAKSQRDLKGWQYFLDDAELNNtdsVNGePTTPSRrsRRgksTSSQKISLKREEDELEIKEGDFLLVQQDN-NSPEVAIVKEIKFGN-DNFLDIIVS
+WFIRMRDIEEA-----DLPKVEEY-KERSQ--------LNENELFITSYLDEVKLGEIIDKVNILSEEEFNnDIVIDDSNKaSTFICRRGCDSAGELFTd
+VFDFRDLCVLFE-KNHHEFIEFIRRKTVPV--------------------
+>gi|242768097|ref|XP_002341502.1| origin recognition complex subunit Orc1, putative [Talaromyces stipitatus ATCC 10500]gi|218724698|gb|EED24115.1| origin recognition complex subunit Orc1, putative [Talaromyces stipitatus ATCC 10500]
+-----------------------------------------------MGKFECRLGHVVLLKSPEAGKDWVGLITEFLEEE-DDDDEeemIKSAnimWFA
+SAEEFLSTK----------TKNRkRVD---------ALPNEQYLTTDFNVNPLTSINGRGKVMSKDAFFAKYpngtPPrnkAelaEYKKCIVCRRGVNQl
+QGK-YTeEFVWEDVY------------------------------------------
+>gi|50550345|ref|XP_502645.1| YALI0D10104p [Yarrowia lipolytica]gi|49648513|emb|CAG80833.1| YALI0D10104p [Yarrowia lipolytica]
+--------------------------------------KAAVRAIRDQDNVEISAGDVVLLKDDPdVEGKEFALIQGLKHGD--QGLEAKCVLMKLFNDA
+EA------LTPKHVIPNTNKNRY-------SKGQELVMMNSIVDVLVEELHLPVNCYSFAEFEALSREDKKGdNVYFCRYVFDNDANKTSvEFDWQDITK
+DMC--------------------------------------
+>gi|255631163|gb|ACU15947.1| unknown [Glycine max]
+--------------------------------------------VKHISKT-IRAGDCVLMRPSDLSKPSyVARIERIEADARGSNVKIHVRWYYRPEES
+IG---------------GRRQF--------HGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSTGAFN-----------
+---------------------------------------
+>gi|145507041|ref|XP_001439481.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124406665|emb|CAK72084.1| unnamed protein product [Paramecium tetraurelia]
+------------------------------------------------CGEIIKLNDKVIIKNE--DSNVedyIGSIQKIcSIVE-PRTLKLiclcEVQW
+FMRKNEIIC------HKPRAR------SW--------IGNQEIFSTNTNDYVLAQTIVQRCTVVDCEEYFNM--ENCDSTTYYNRLEWDVECKKFTNMN-
+----------------------------------------------
+>gi|145539714|ref|XP_001455547.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124423355|emb|CAK88150.1| unnamed protein product [Paramecium tetraurelia]
+------------------------------------------------QNQEYHVGQNLCIR-gD--NGS-eyVAKLIKVvKLID-NED-N-clpfiKVQ
+WYYRKTELTG------LPKDYL------EC--------ISENEVFKTNELDYIEIESIIGLAIILSYEEYDKI--EELNENVYFMRATY-FDQ-kLFPSF
+E-----------------------------------------------
+>gi|19112852|ref|NP_596060.1| origin recognition complex subunit Orc1 [Schizosaccharomyces pombe 972h-]gi|1709487|sp|P54789.1|ORC1_SCHPO RecName: Full=Origin recognition complex subunit 1gi|1127741|gb|AAC49129.1| Orp1 [Schizosaccharomyces pombe]gi|1161930|gb|AAC49141.1| orc1+ protein [Schizosaccharomyces pombe]gi|4007803|emb|CAA22443.1| origin recognition complex subunit Orc1 [Schizosaccharomyces pombe]
+-----------------------------------------------KNDVIYRVGDDITVHDGD-SSFYLGVICKlyekaIDKHSGKKYVEA--IWYSR
+AYakrmEIKPE----YLLPD------------------RHINEVYVSCGRDENLTSCIIEHCNVYSEAEFFskfpaGIPTKrkDLFPCNFFIRRGVHLKV
+NKYTePLDWSYYAHNLE--------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 963 * * * * 1038 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1433 0 0
+
+M 2 * * * * * * * * * * 963 * * * * 1038 * * * * 2
+ 0 * * * * * * 1433 0 0
+
+T 3 * * * * * * 1038 * * * * * * * * * 963 * * * 3
+ 0 * * * * * * 1433 0 0
+
+M 4 * * * * * * * * * * 0 * * * * * * * * * 4
+ 0 * * * * * * 4504 0 0
+
+A 5 326 * * * * * * * * * * 3212 * * * 3406 * * * * 5
+ 0 * * * * * * 4504 0 0
+
+K 6 3411 3660 * 3588 * * 3379 * 2134 * * * * 3465 3321 2126 * * * * 6
+ 0 * * * * * * 4504 0 0
+
+T 7 * * * * * * * 4471 3440 3184 * 3295 * * 4313 2243 1361 * * * 7
+ 67 * 4471 * * * * 4504 0 0
+
+L 8 3454 * * * * * * 3352 * 1696 * * 3061 1591 * 4309 * * * * 8
+ 75 * 4309 * * 0 * 4429 0 1063
+
+K 9 3322 * * * * * * * 685 * * * * * 3521 2825 4330 * * * 9
+ 177 * 3117 * * * 0 4410 0 1068
+
+D 10 * * 872 2120 * * * * 4210 * * 4044 * 3200 * * * * * * 10
+ 90 4044 * 0 * 1717 523 4234 1071 1354
+
+L 11 * * * * 1982 * * 3417 * 614 * * * * * * * * * * 11
+ 0 * * * * * 0 4350 0 1230
+
+Q 12 4256 * 4722 1482 * * * * 1745 * * 3135 * 2841 * * * * * * 12
+ 83 4160 * 0 * 0 * 4350 1067 1230
+
+G 13 4444 * 4313 * * 230 * * * * * * * 4282 * * * * * * 13
+ 0 * * * * * * 4504 0 0
+
+W 14 * * * * * * * * * * * * * * * * * * 68 4444 14
+ 0 * * * * * * 4504 0 0
+
+E 15 * * 4433 1906 * 4471 * * 3337 * * 3202 * 1539 4380 4568 * * * * 15
+ 0 * * * * * * 4504 0 0
+
+I 16 * * * * 2330 * * 1089 * 4557 * * * * * * * 3118 * 2529 16
+ 134 * 3499 * * * * 4504 0 0
+
+I 17 * * * 4196 4469 * 4388 1297 * 4058 * * * 4169 4291 * 3814 2652 * 4364 17
+ 0 * * * * * 0 4346 0 1178
+
+T 18 * * * * 3376 * * 1684 3220 2267 * * * * * * 2567 3203 * * 18
+ 195 2980 * 758 1291 0 * 4346 1359 1178
+
+T 19 * * 2615 2905 * * 4568 * 2799 4160 * 4978 * 4433 * * 1383 * * * 19
+ 0 * * * * * * 4504 0 0
+
+D 20 * * 724 2828 4568 * * * * * * 3715 * * * 3439 * 4530 * * 20
+ 0 * * * * * * 4504 0 0
+
+E 21 3079 * 3694 1737 * 4396 * * * 4282 * * 3346 4403 * 3401 4557 3026 * * 21
+ 0 * * * * * * 4504 0 0
+
+Q 22 * * 3018 1969 4396 4557 4879 * 2803 * * 4503 * 3005 * 2433 * * * * 22
+ 0 * * * * * * 4504 0 0
+
+G 23 * * 3234 * * 1080 * * 4380 4694 * 4361 * 3481 * 2737 * 4444 * * 23
+ 0 * * * * * * 4504 0 0
+
+N 24 * * 2475 3350 * 4380 * * * * * 1254 4313 * 3582 3478 5009 * * * 24
+ 207 * 2905 * * * * 4504 0 0
+
+I 25 * * 3438 * * 3192 * 2051 * 3051 * 3538 * * * 3149 * 2074 * * 25
+ 738 1320 * 1638 559 664 1438 4267 1869 1282
+
+I 26 * * * * * * * 1218 * 2321 4222 * * 4249 * * 3145 2731 * * 26
+ 0 * * * * * 0 4229 0 1305
+
+D 27 4100 * 1461 * * * 4738 * 4278 * * 3454 3213 3679 4108 4335 4335 4182 * * 27
+ 0 * * * * * 0 4229 0 1305
+
+G 28 * * 1859 2631 * 1837 * * * * * 4229 * * * * 2594 * * 3965 28
+ 1005 995 * 185 3057 593 1570 4229 2005 1305
+
+G 29 * * * 4098 * 4546 * * 4465 * * 3765 3506 * 1962 2438 1996 * * * 29
+ 0 * * * * * 0 4404 0 1064
+
+Q 30 4335 * 4351 * * 3453 * * 3549 * * 4782 2175 2325 2484 * 3497 * * * 30
+ 0 * * * * 0 * 4404 0 1064
+
+K 31 4433 * * * * * * * 2791 * * * * * 557 4444 4694 4471 * * 31
+ 0 * * * * * * 4504 0 0
+
+R 32 * * 4433 * * * * * 4403 * * * 4694 * 364 * 3457 * * * 32
+ 124 3601 * 0 * * * 4504 1194 0
+
+L 33 4303 * * * * * * * 4387 4529 * * 3246 * 1801 1411 3473 * * * 33
+ 0 * * * * 0 * 4512 0 1078
+
+R 34 * * * * * * * * 4433 * * * * * 123 4831 * * * * 34
+ 914 1379 3562 895 1113 * * 4504 1923 0
+
+R 35 3180 * * * * * * 4328 2994 * * * * * 755 * 4829 3526 * * 35
+ 55 * 4731 * * * 0 4374 0 1152
+
+R 36 4187 * * * * 3194 * * * * * 3262 * 3814 1005 3258 * 4119 * * 36
+ 695 1607 4208 1363 710 533 1695 4380 1881 1287
+
+G 37 2674 * 4169 * * 1180 * * * * * 3294 * * 3348 * 2774 * * * 37
+ 419 2211 4796 1001 999 * 0 4346 1512 1178
+
+A 38 1728 * * 2613 * 3037 * * * 4319 * 3247 4206 * * 2750 * 4195 * * 38
+ 91 4027 * 2322 322 * 0 4354 1095 1260
+
+K 39 4262 * * 4335 * 4639 4181 * 1718 * * 4401 * * * 1646 3563 4391 * * 39
+ 0 * * 1000 1000 1947 433 4475 1024 1260
+
+T 40 4278 * 3292 1326 * * * * * 4485 4363 * 3097 4547 * 4274 2807 * * * 40
+ 0 * * * * * 0 4467 0 1178
+
+E 41 3320 * 4356 4602 * * 4347 3646 4547 4394 * 3201 * 2712 4463 3340 4863 3287 * 4373 41
+ 0 * * * * * 0 4467 0 1178
+
+H 42 * * * * 4846 * 4602 1276 * 2796 * * * * * * 4730 1602 * * 42
+ 0 * * * * * 0 4467 0 1178
+
+Y 43 * * * * 2156 * 4373 * 3300 * * 4235 * 4863 2449 2870 4447 4347 * 3017 43
+ 178 3106 * 2099 383 0 * 4467 1461 1178
+
+L 44 4378 * * * * * * 3464 * 215 * * * * * * * * * * 44
+ 0 * * * * * * 4621 0 0
+
+K 45 * * * 4538 4895 * 4774 1813 2672 * * * * 2828 3039 5140 4295 3765 * 5056 45
+ 0 * * * * * * 4917 0 0
+
+R 46 * * * * * * * * 2899 * * 5056 * 4570 333 * * * * * 46
+ 64 * 4524 * * * * 4917 0 0
+
+S 47 * * 3623 2121 * 2081 5570 4109 3505 3761 * 5068 * 4102 * 4475 3667 * * * 47
+ 45 * 5037 * * 0 * 4842 0 1067
+
+S 48 4213 * 4022 5854 * 5669 * 4855 3121 5058 2678 6674 6703 3882 * 2267 2718 5533 * 4534 48
+ 0 * * * * * 0 5408 0 1003
+
+D 49 * 5735 935 4282 * 2391 7408 * * * * 3108 * 4181 5873 6421 6612 * * * 49
+ 0 * * 1000 1000 * 0 5754 1003 1003
+
+G 50 4438 * 4146 3516 * 1351 7314 * 2860 5153 * 3346 7284 5150 * 3248 7026 * * * 50
+ 0 * * * * * 0 5754 0 1003
+
+I 51 * * * 4524 2403 * * 2899 6167 1976 4400 * * 3943 6038 * 4465 2377 * * 51
+ 172 * 3155 * * * 0 5754 0 1003
+
+K 52 * * 5191 1425 * * 5325 3770 3810 4950 * * * 4497 3214 3870 4055 3088 * * 52
+ 0 * * * * 182 3077 5618 0 1459
+
+L 53 * 2319 * * 2145 * * 2257 * 2259 * * * * * * * 3361 * 4108 53
+ 0 * * 0 * 0 * 5754 1003 1003
+
+G 54 7118 6416 * 4695 * 2912 5264 * 1817 6690 * 6050 * * 2009 3127 4196 * * 4119 54
+ 0 * * * * * * 5768 0 0
+
+R 55 3541 4186 * 6161 * * 7058 3184 4733 2929 * * 3719 * 2570 * 4911 1831 * * 55
+ 0 * * * * * * 5768 0 0
+
+G 56 4711 * * * * 84 * * * * * 5758 * * * * * * * * 56
+ 0 * * * * * * 5768 0 0
+
+D 57 * * 532 3755 * * 6012 * * * * 5516 * 2883 * 6061 5899 5071 * * 57
+ 0 * * * * * * 5768 0 0
+
+S 58 3209 2897 5841 * 6161 * * 6039 5758 * * 3260 * * * 2014 2126 3356 * 6194 58
+ 0 * * * * * * 5768 0 0
+
+V 59 5240 * * * * * * 1713 * 3602 * * * * * * 7008 790 * * 59
+ 0 * * * * * * 5768 0 0
+
+V 60 * 4639 * 4067 7422 * * 2652 * 1031 5635 * * 6416 * * 4829 2484 * * 60
+ 0 * * * * * * 5768 0 0
+
+M 61 * 4141 * * 5720 * * 2157 * 2029 1964 * * * * * * 2329 * * 61
+ 0 * * * * * * 5768 0 0
+
+H 62 * * * * * * 3588 * 1339 * 6991 2431 * 3962 2860 4895 4543 * * 4329 62
+ 80 6190 4639 1585 585 * * 5768 1048 0
+
+N 63 2639 * 1907 4072 * 4441 * * * * * 3282 3789 4035 * 2326 * 4974 * * 63
+ 33 * 5466 0 * 0 * 5699 1110 1217
+
+E 64 4241 * 2548 1787 * 2757 4848 * 5764 * * 4855 2834 6417 5740 3644 * * * * 64
+ 570 * 1615 * * 0 * 5762 0 1037
+
+A 65 4024 * 2161 2514 * 2510 * * 3594 * * 5162 4351 4725 * 5258 4507 3370 * * 65
+ 298 3372 3471 0 * 3529 131 4958 1304 2581
+
+A 66 2091 * * * * 4959 * 4482 * 4018 * 6014 3349 * * 2235 2291 3378 * * 66
+ 0 * * * * 0 * 4838 0 2655
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+Q 238 * * * * * 2608 * * 2735 2909 * * * 1862 2790 2911 * * * * 238
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+//
+�HHsearch 1.5
+NAME 71fdde7383f09a65b56a391c1db52e35
+FAM
+FILE 71fdde7383f09a65b56a391c1db52e35
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:48:26 2013
+LENG 94 match states, 94 columns in multiple alignment
+FILT 102 out of 383 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEEEECCEEEEEEEEEECCCEEEEEEEEECCCCEEEEEECCCCCCC
+>ss_conf PSIPRED confidence values
+9973988998999999999999876375886399999997652543258999657899999999489779999997078928999801789998
+>Consensus
+GgwxxidvxxxvqxxaxfAvxexNkxxxxxxlxfxkVvxaxxxxxxxxxxQvVaGxnYxLxixaxxxxyxaxVxexpwxxxxxLxsFxxxxxxx
+>71fdde7383f09a65b56a391c1db52e35
+GEWEIIDIGPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEREIKGYEYQLYVYASDKLFRADISEDYKTRGRKLLRFNGPVPPP
+>gi|224158457|ref|XP_002337975.1| predicted protein [Populus trichocarpa]gi|224160549|ref|XP_002338224.1| predicted protein [Populus trichocarpa]gi|222870101|gb|EEF07232.1| predicted protein [Populus trichocarpa]gi|222871368|gb|EEF08499.1| predicted protein [Populus trichocarpa]
+GGWTPIkNMNdTQAIEIAEFAITENNKQA-SSNLELDSIVKGL-------ERDAGDNKNYQLVLTVKGGKadeqYEADVNV--SGNLKALILFVP-L---
+>gi|15225164|ref|NP_180758.1| cysteine proteinase inhibitor 2 [Arabidopsis thaliana]gi|125991828|sp|Q8L5T9.2|CYT2_ARATH RecName: Full=Cysteine proteinase inhibitor 2; Short=AtCYS-2; Flags: Precursorgi|4263720|gb|AAD15406.1| putative cysteine proteinase inhibitor B (cystatin B) [Arabidopsis thaliana]gi|110738361|dbj|BAF01107.1| putative cysteine proteinase inhibitor B [Arabidopsis thaliana]gi|330253521|gb|AEC08615.1| cysteine proteinase inhibitor 2 [Arabidopsis thaliana]
+GGKSGVpNIRtnREIQQLGRYCVEQFNQQA-qneqgnigsiaktdtaiSNPLQFSRVVSA--------QKQVVAGLKYYLRIEVTQPngstrMFDSVVVI
+QPWLHSKQLLGFTP-VVSP
+>gi|242039791|ref|XP_002467290.1| hypothetical protein SORBIDRAFT_01g023010 [Sorghum bicolor]gi|241921144|gb|EER94288.1| hypothetical protein SORBIDRAFT_01g023010 [Sorghum bicolor]
+-SYTKQeDVSsDFIKQVGKFAVNVYRLAH-MIPMNYLSTSKC--------WSSPAGgga-NNYWMVLSATNYtgtagSYVSTVWGIPGSesKTWKLLTF-
+------
+>gi|241159543|ref|XP_002408587.1| cystatin, putative [Ixodes scapularis]gi|215494370|gb|EEC04011.1| cystatin, putative [Ixodes scapularis]
+GVWRKHhpDVDPRYKEWAHFAISSQ---V-EDRTNFDtlmTLISV--------ESQVIAGVDYKLKMKVAESncvigvdsysrerchlkvdapymICTAL
+VNYMPWEHKTSLKSYNC-----
+>gi|296200364|ref|XP_002747566.1| PREDICTED: cystatin-S-like [Callithrix jacchus]
+GGIHDADLSdEWVQRALHFAISKYNKAT-KDAYYRRllRVLRA--------REQTVAGTNYFFDVEIgrttctksqPNLdtcPfreqpelqkkqfCSFQI
+YEVPWEDRMSLVKSR------
+>gi|2665886|gb|AAB95324.1| cystatin-1 [Haemonchus contortus]
+GGLTDQSTDdPEFMEQAWKAATKVNEEaN-DGDYYMipTKVLSA--------KTQVVSGVMFTSKVLFeesfckkgdvpvdqlkaSNcapkeGgkrvIYE
+ISVLLQPWVKSEQVG---------
+>gi|28900876|ref|NP_800531.1| hypothetical protein VPA1021 [Vibrio parahaemolyticus RIMD 2210633]gi|28809322|dbj|BAC62364.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
+GGWNEFDATPDAQKAMAFVLKQMDTLS-----SFKQILTV--------HAQIVSGVNYAIEFEMDDGSiWNTIVYR-------------------
+>gi|123480843|ref|XP_001323421.1| Clan IH, family I25, phytocystatin-like peptidase inhibitor [Trichomonas vaginalis G3]gi|121906286|gb|EAY11198.1| Clan IH, family I25, phytocystatin-like peptidase inhibitor [Trichomonas vaginalis G3]
+GGVKPANVDdEHVIQAFKDAVALANQKN-GTNLEFVELITA--------TQQVVSGFIFEGVVKTNDGDYKAKIWCKPGNTEKELQSFE------
+>gi|73991007|ref|XP_848363.1| PREDICTED: similar to cystatin 11 isoform 1 precursor [Canis familiaris]
+-----VSASdPYVTTTMQYLSDDFNKKS-NDKYNFRivRLLKV--------QKQITDHMEFHVNME-------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 15 6614 * 0 * * * 5921 1000 0
+
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+ 32 5490 * 2278 333 * * 6050 1090 0
+
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+ 51 6481 5395 1000 1000 * 0 5927 1001 1011
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+
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+
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+
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+
+K 44 * * 2092 * * * * * 386 * * * * * * * * * * * 44
+ 0 * * * * 6241 19 2658 0 5041
+
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+
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+A 64 1316 * 6601 6842 5118 4125 * 3714 5927 3786 4883 * * * * * 3659 2316 * 6139 64
+ 183 3070 * 3482 135 * 0 6206 1554 1000
+
+S 65 2565 5144 5660 4578 * 5171 5915 4818 3055 5662 7197 4042 6209 5866 6765 2296 2758 4378 * 6129 65
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+D 66 6872 * 1594 3778 * 3697 6589 * 5307 6856 * 2689 3794 4131 3452 3768 6741 7058 * * 66
+ 286 2549 6830 3597 124 1336 728 6189 1825 1073
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+ 1603 576 * 2877 211 0 * 6164 3991 1096
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+D 76 6533 * 4068 4084 * * 4959 3103 2013 6261 5470 6766 6800 2522 2911 6148 6109 3557 * * 76
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+
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+ 37 5315 * 1000 1000 * 0 6096 1059 1013
+
+R 80 6899 * 4030 5087 * 4684 3263 * 2581 * * 1517 5016 4996 3924 5806 3816 * 6557 6188 80
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+G 81 * 6179 4611 3830 2789 3681 5708 3926 3443 5999 6823 5399 * 6337 3484 3417 2466 4297 * * 81
+ 34 5416 * 0 * * 0 6082 1052 1152
+
+R 82 * * * 4663 3686 * * 2913 2368 4353 4465 6179 * 6530 2262 7014 3330 6337 3373 6257 82
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+K 83 6026 * * 2224 * 6176 * 4909 1630 * * 4210 * 3106 4663 2838 5494 6172 6075 * 83
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+
+G 89 4413 3818 * 3729 * 3409 * * 4942 4312 * * 961 4420 4838 * 4868 * * * 89
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+P 90 * * 2221 * * * * * 2166 * * * 829 * * * * * * * 90
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+V 91 1706 * * * * * * 4126 * 2453 * 4141 * * * * * 1334 * * 91
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+P 93 * * * * * * * * * * * * 1220 * * 809 * * * * 93
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+
+P 94 * * * * * * * * * * * * 0 * * * * * * * 94
+ 0 * * 0 * * * 1609 0 0
+
+//
+�HHsearch 1.5
+NAME 74210cc330abf78ec4c1fa3592d2152d
+FAM
+FILE 74210cc330abf78ec4c1fa3592d2152d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:23:49 2013
+LENG 223 match states, 223 columns in multiple alignment
+FILT 138 out of 1103 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEECCCCCCCEEEEEECCCEEEEEEEEECCEEEECHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCE
+EEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCC
+CCCEEEEEHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9999899987888699997698699999980999998989977863899742102335787479998899818887777776868999988877678835
+7778687777899889999857647888777723279999971689966642588886749974178998657789788399989999999706788888
+98639999899799999997439
+>Consensus
+ixxgxxxxxxxxPwxvxxxxxxxxCxGtlIsxxxVLTaaxCxxxxxxvxxgxxxxxxxxxxxxxxxvxxxxxhpxxxxxxxxxDiAllxLxxxxxxxxxx
+xpiclxxxxxxxxxxxxxxgxgxxxxxxxxxxxxlxxxxxxxxxxxxCxxxxxxxxxxxxxCxxxxxxxxxxcxgdsGxplxxxxxlxGixsxxxxcxxx
+xxxxxxxxvxxxxxwIxxxixxx
+>74210cc330abf78ec4c1fa3592d2152d
+IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRV
+ASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQK
+NKPGVYTKVCNYVSWIKQTIASN
+>gi|118790260|ref|XP_001231107.1| AGAP004700-PA [Anopheles gambiae str. PEST]gi|116122431|gb|EAU76241.1| AGAP004700-PA [Anopheles gambiae str. PEST]
+----------------------YFCSAVFISADFLLAPAMCLKlmqpvddhpsSHMFVLIEAEHVFYYEGG--RRYINKIFYHPKLEEEPVYHNLAVVKL
+RNPIrEt-VmanGQSIVACLWSEIKLRNNKVYLGEWFKYHP---EQNPAFRWLDVPVITRKECREELSKNkviipefdrgVAETQLCVKDKKNSTmiEFC
+EPRSSGPLFMTLgntvYVVGMPTVHIdDCNV--QIEVFNQVSSFLDWIEAIV---
+>gi|17511021|ref|NP_491910.1| TRYpsin-like Protease family member (try-7) [Caenorhabditis elegans]gi|2088690|gb|AAB54144.1| Trypsin-like protease protein 7 [Caenorhabditis elegans]
+VYNGRDASQSEAPWSVFTYlyskdeQSATTCTGTIVSPRHILIATHCFAgqnrdGSWNLIEDTFDRSNCKDDDYVITNQEFLKRVEFLSnkkgisrypek
+itlvhactkrtanrtkkippQYYTDDFAIVHLYEELTFSSNVQSVCVADDETQPNDKLSLEYFGfglnppsDINQNGVDNTGQLRYEKIEVFRSHPMEIY
+F--------FQARDITDKTVACvvslkililnktqaslnislKGDSGGGAIADVkgkkTIIGVLSQTScqkRRGGNETMELYSSVGFYKNQI-------
+>gi|189240061|ref|XP_001808986.1| PREDICTED: hypothetical protein [Tribolium castaneum]gi|270011741|gb|EFA08189.1| hypothetical protein TcasGA2_TC005816 [Tribolium castaneum]
+--NGERVPPGYYSYAVIFKlmkepkshlfnNSDFFeslaiCSGTVLNRRWVVTKASPIAYYKTKLYRVMVQPDGSQASNTYKVESVLLHPNHFPGDITTD
+VALVRVARDFQFALDLRNANLGFPvMPLNQTACKMPVWSFFFVDNSNSSKIMEKGEISLtVVTTGC--------HTDFLCLK-PNNSKAPCSFNIGMPII
+CNTVLTAVY-FGNettgGCNG-QLPEMVTALRADTPFLE------
+>gi|187735175|ref|YP_001877287.1| 2-alkenal reductase [Akkermansia muciniphila ATCC BAA-835]gi|187425227|gb|ACD04506.1| 2-alkenal reductase [Akkermansia muciniphila ATCC BAA-835]
+------------PWNTGRY-QGGIGTGFLIGENAFMTNAHVVSNAERIYISMY-----GDSRKIPARVKFIAH--------DADLALLEADDPR-PFKGI
+RPFEFSkN-LPHLEDEVRVIGYPIGGNRLSVTRGVVSRIDFTTYAHPRNTEHLTIQVDAAIN------------PGNSGGPVLMGNKVIGVA--------
+------------------------
+>gi|195112812|ref|XP_002000966.1| GI10530 [Drosophila mojavensis]gi|193917560|gb|EDW16427.1| GI10530 [Drosophila mojavensis]
+-------------HLVYLRfNYNIICSGIVVNNRTVLTVTSCLDRKEPPKIIVHFTD-----GTAQTASSSSPSSDYTMSSGSNLLSFLHLEKPLD-QEF
+DTPPPFCTQAVRPQDNVMQLNWDKNYSR-------PIPRFVPQMPLDQCQTLNRDarMLAPAVHCVEN-TQYTDECIRSYGLPYVWKGAFCGMNINGHNC
+SVPSNADVYVRLLREKRLISKMLRT-
+>gi|42521718|ref|NP_967098.1| hypothetical protein Bd0072 [Bdellovibrio bacteriovorus HD100]gi|39574248|emb|CAE77752.1| hypothetical protein predicted by Glimmer/Critica [Bdellovibrio bacteriovorus HD100]
+------------------------CTVTLVSDNCVVTVGACALdrdyVEFNVPVSVAGVAQKSSLEDRYYVEKGTERHKADG--IGHQWAVLRLKPNEVT
+GKNAGAVqgfyRMATKKSQNNDPIRVVSYGYALND--LYdikrgdmpansnpdq-mHFAQQVSHGKLV----KAGIF--LIPEII-----EHDADTSYGS
+WGAPVINEKtnELVGINTHG-GCRAQyvvkagaRY---------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+I 1 * * * * 4868 * * 1075 4724 5081 4824 * * 4983 * * 4815 1639 * * 1
+ 0 * * * * * * 7520 0 0
+
+V 2 4912 * 5017 4036 * 4753 * 2423 * 2661 4130 * * * * 4064 3271 2060 * 4922 2
+ 0 * * * * * * 7564 0 0
+
+G 3 5424 * 4388 5212 * 1174 * * * * * 1555 * 5781 * 4395 5182 * * 5311 3
+ 0 * * * * * * 8111 0 0
+
+G 4 3962 * * 5528 * 497 5342 * * * * 5536 5679 4360 5314 3917 * * * * 4
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+
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+ 20 * 6211 * * 0 * 8699 0 1003
+
+T 6 3591 * 2486 2979 * * * 4365 5012 4924 * 4736 2654 5984 3372 4465 3629 4924 * 4989 6
+ 0 * * 0 * 0 * 9141 1000 1000
+
+C 7 1735 6450 4450 5810 * * * 5014 6165 6104 * * 3760 * * 4031 2878 1765 * * 7
+ 0 * * * * * * 9297 0 0
+
+G 8 3182 * 3172 4228 5956 3135 5195 5021 4163 4593 * 3311 3542 5184 4131 2985 5090 * * 6229 8
+ 23 6008 * 0 * * * 9417 1000 0
+
+A 9 3007 * 4155 5949 * 4562 6186 4185 6130 4644 * 4501 2171 3847 4581 3506 5184 3928 4246 5233 9
+ 0 * * * * * * 9452 0 0
+
+N 10 4312 6016 3147 3688 6315 2617 2992 * * * * 2929 6233 4718 4632 3238 3538 * * 5191 10
+ 36 5338 * 3322 152 * * 9507 1195 0
+
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+ 33 5452 * 0 * * * 9521 1170 0
+
+V 12 2949 * 6327 6578 2729 4672 5049 5274 * 5319 4464 * * 5356 5491 5402 4299 4937 3039 1967 12
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+
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+
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+ 0 * * 2322 322 0 * 9808 1000 1185
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+Q 15 3274 * * 5677 5101 * 5563 3553 * 2516 2698 6778 * 3577 5014 3943 4772 2580 * 5653 15
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+
+V 16 2470 6599 * * * 3769 6744 5518 6643 5069 6797 * * 6635 6511 4545 4956 863 6634 * 16
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+
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+
+L 18 6379 * * * 3539 4668 * 1959 4537 1638 6372 6651 * 6691 * 6403 5657 2667 * 5630 18
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+
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+ 1763 611 4299 1940 435 * 0 9989 7781 1065
+
+S 20 4189 * 3280 3331 5128 3362 4989 6930 3403 * * 2989 4005 4337 4340 3729 4167 5377 * 4624 20
+ 14 6730 * 1585 585 2640 252 9930 1008 1948
+
+G 21 4692 * 4387 3449 * 1886 4998 5645 3838 6312 * 3539 5757 5417 4104 2979 4234 * 5686 4959 21
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+
+Y 22 5602 * 3656 4772 5603 2783 4795 6526 3268 6246 6547 3885 5662 4076 3235 3329 3382 5084 * 4467 22
+ 102 4148 6373 1109 899 2238 344 9880 1838 1810
+
+H 23 5705 * 5751 4504 3305 4850 2747 4360 5210 4485 7023 3723 4171 6750 3812 5075 4710 3704 5005 3085 23
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+
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+ 130 3538 * 1160 856 687 1400 10149 2405 1438
+
+C 25 * 154 * * 5865 4936 * * * 5281 * * * * * 6654 5967 * * * 25
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+
+G 26 3770 * * * * 2358 5416 6920 * 4514 4409 5261 6023 6564 6968 1984 2130 4513 * 5381 26
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+
+G 27 2558 6988 * 6603 * 399 * * * 6801 * * * * 6596 * * 4869 * * 27
+ 0 * * * * * 0 10216 0 1228
+
+S 28 2986 5345 * 5816 5853 * 6938 5187 * 4652 6360 5728 * * * 2763 1620 2134 * 7084 28
+ 0 * * * * * 0 10216 0 1228
+
+L 29 5041 * * * 4606 * 6811 2145 * 1211 4395 * 6602 6479 * * * 2840 5824 4822 29
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+
+I 30 6904 * * * 5894 * 7144 1091 * 2060 * * * * * * * 2048 * 5899 30
+ 54 4773 * 2665 248 * 0 10221 1597 1065
+
+N 31 3029 6840 3516 * * 2976 4765 * 4941 * 6823 3128 6958 * 5044 1617 3360 * * * 31
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+
+S 32 4299 * 3347 3359 * 4654 6015 * 3672 4971 * 3392 2036 5055 3818 3225 5940 * * 5342 32
+ 0 * * * * 982 1019 10315 0 1300
+
+Q 33 * * 2957 4756 * 6085 5256 6252 3948 4607 5479 2744 6966 3813 1946 4370 3971 6697 5123 6222 33
+ 79 4222 * 2274 334 * 0 10242 1887 1065
+
+W 34 5450 6831 7016 * 3182 7114 2636 5343 5533 3659 5064 6940 * 5826 5874 6014 3149 3630 2733 3002 34
+ 10 7114 * 3585 126 * 0 10233 1000 1065
+
+V 35 4287 * * * 4705 * * 2146 * 3478 5390 * * * * 6896 6783 903 6683 6838 35
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+
+V 36 6926 * * * 6893 * * 2866 * 551 5338 * * * * * 6683 2951 * * 36
+ 0 * * * * 771 1272 10233 0 1228
+
+S 37 6023 * 8578 * * 6646 * 6003 * 5237 * 6876 * * * 3240 322 7140 * 6909 37
+ 11 7052 * 1585 585 * 0 10238 1000 1000
+
+A 38 1186 * 6909 6879 5902 * * * 5313 6013 * 6124 5268 * * 2050 2675 5013 * 5886 38
+ 13 * 6782 * * * 0 10238 0 1000
+
+A 39 837 6699 4974 5727 * 3594 6678 * 4965 5995 * 5232 6722 * 3980 3552 4405 7042 * * 39
+ 0 * * 2000 415 0 * 10228 1000 1156
+
+H 40 5007 * 4225 5539 6963 5741 1436 5688 4303 7015 7018 4596 6381 4237 4725 2665 4407 5361 * 4694 40
+ 21 6650 7699 3000 193 * * 10238 1052 0
+
+C 41 6067 245 5843 * 5902 6937 * 6840 8578 5374 * * 7019 6915 * 5880 * 5043 * * 41
+ 75 4632 6594 1472 645 * 0 10238 1672 1000
+
+Y 42 4639 5975 * 5891 2290 6634 * 3616 6800 2133 4898 * 6547 * * * 3653 2008 * 5529 42
+ 225 3151 4975 2974 196 0 * 10235 3224 1227
+
+K 43 3957 * 3685 3167 4882 4264 4411 6091 4707 5403 4611 5413 5532 3844 3203 3165 4691 4580 * 3631 43
+ 745 1334 7203 2882 210 * 0 10179 6617 1516
+
+S 44 3867 * 2936 4904 6784 3389 5943 * 3558 * * 3619 3256 3924 3814 2952 3581 6739 * 5927 44
+ 134 4673 4335 2587 263 2423 298 10185 1609 1667
+
+G 45 3582 * 3939 3618 6735 3531 5294 5257 3333 5712 5812 4110 3188 4240 3548 3451 4667 5940 * 4921 45
+ 147 3764 5433 2552 270 1357 714 10128 2280 2640
+
+I 46 4432 * 5150 4613 3103 4486 6787 4230 4368 3010 5252 4844 5004 5856 4460 3830 4254 2812 5385 4486 46
+ 25 6956 6822 616 1525 2347 316 10160 1183 2430
+
+Q 47 4304 * 5859 4132 4286 5006 4273 5288 3293 5596 6094 4103 3953 4711 3610 3528 2984 3738 6985 4667 47
+ 31 5923 7670 2659 249 1671 544 10162 1155 2282
+
+V 48 3407 * 6100 5242 5105 5819 * 2789 4925 3961 5972 4937 5678 4683 7082 4587 5377 1399 * 5884 48
+ 25 5882 * 2198 355 2887 209 10194 1359 2000
+
+R 49 5562 * 5270 6040 4722 5441 5471 3978 3415 3447 5345 6950 5379 4853 2196 4943 4113 3143 5347 3884 49
+ 32 * 5525 * * * 0 10194 0 1850
+
+L 50 3702 * 7092 6845 2801 4674 7168 3124 6601 2187 5323 6950 7229 5841 6938 4450 4846 2744 * 3684 50
+ 34 6007 7031 2271 335 1151 863 10170 1489 2322
+
+G 51 6110 * 3626 4626 4752 1050 * 4818 3973 4912 7019 * 6047 6782 4540 4674 4860 4792 6470 6002 51
+ 32 * 5528 * * 1167 850 10215 0 1824
+
+E 52 3727 * 3986 3365 5980 4000 5342 4207 4570 4466 4860 6569 4384 4646 4352 2842 3973 3260 6681 5590 52
+ 21 * 6096 * * 2656 249 10221 0 1922
+
+D 53 3736 * 3827 4813 4270 3746 3831 4434 6860 3736 6991 4578 5062 5328 4307 3810 3811 3993 5308 3229 53
+ 35 6899 5977 3585 126 2043 401 10211 1009 2094
+
+N 54 4655 6127 2592 4239 4872 3612 5013 6458 4308 5299 * 3036 4461 5065 4324 3432 4174 3730 * 5469 54
+ 7 * 7719 * * * 0 10184 0 2125
+
+I 55 4017 5254 5888 4835 3699 * * 3176 4455 2494 5237 6850 5390 4955 4052 4426 3731 3119 5129 4954 55
+ 53 4805 * 2376 309 2161 365 10184 1784 2270
+
+N 56 4497 6933 3148 4965 4734 3564 5070 5401 4248 5312 * 3426 4322 4950 4004 3598 3216 4006 5772 4614 56
+ 152 6666 3472 3700 115 * 0 10185 1071 1967
+
+V 57 4590 6649 3960 4453 4396 5080 5680 5707 4055 4265 5347 5238 3554 4714 3448 3018 4383 2757 6782 5922 57
+ 192 6742 3118 1585 585 2971 197 10032 1005 3601
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+V 58 4463 6620 4008 4250 3828 3915 * 7107 4261 3734 5722 3883 4014 6743 3912 3350 3713 3446 6548 4123 58
+ 38 5279 * 2061 395 1171 847 9933 1283 4839
+
+E 59 3210 * 2931 3456 5685 3393 6172 4747 4624 5766 5415 4248 5316 4506 4287 3041 3730 5234 * 5311 59
+ 126 4544 4611 2711 239 1897 451 10057 1698 3301
+
+G 60 3578 * 3451 3324 5890 3028 5363 6842 4288 5893 6705 4466 3858 4047 6021 3599 3272 4305 * 4376 60
+ 149 4346 4361 1334 729 4427 69 10040 1758 3372
+
+N 61 4775 5002 2814 4349 4882 3198 4756 * 5468 5199 5868 3333 3364 5080 5126 3616 3556 5112 * 4505 61
+ 67 5153 5840 1626 565 591 1573 9985 1365 4000
+
+E 62 3407 5831 3850 3283 4860 3153 5802 5101 3806 5416 7181 4354 4979 5322 3506 3419 4079 5306 5178 5562 62
+ 141 4025 4980 3756 111 * 0 10138 2084 2284
+
+Q 63 4494 * 3101 3305 6787 5814 5412 4079 3262 5088 6884 5362 4817 2362 3726 5209 3844 4591 * 5779 63
+ 53 6852 5200 0 * 1159 857 10102 1011 2866
+
+F 64 4507 5276 4408 4576 4095 5377 5487 3464 5529 4259 4326 5391 6778 4812 3648 3775 2879 3336 6811 4143 64
+ 35 5950 6980 1852 468 1792 492 10140 1156 2494
+
+I 65 3400 * 4529 * 3865 5994 4215 3421 5394 2906 7975 5835 5363 5897 2918 4955 4025 3218 * 3695 65
+ 0 * * 2322 322 976 1024 10152 1000 2190
+
+S 66 4218 * 5285 4253 6126 3277 4872 6111 3068 4620 6070 3583 3605 4100 3713 4097 4294 4370 6502 4102 66
+ 30 5596 * 1005 995 * 0 10215 1356 1523
+
+A 67 3161 * 4849 5663 5831 4464 5227 1952 * * 7289 5045 6154 * 5818 4534 6299 1496 7165 * 67
+ 13 6839 * 1000 1000 1122 888 10215 1022 1523
+
+S 68 3459 * 3398 3147 5802 5810 4942 4172 3551 4421 * 4764 5257 4343 4498 3012 3315 5174 * 4762 68
+ 14 * 6739 * * * 0 10218 0 1211
+
+K 69 5019 * 5352 3249 6899 6009 3454 * 2579 6004 6896 4999 5880 3781 3411 2853 3693 4175 4703 6899 69
+ 65 7045 4780 2000 415 1622 567 10210 1015 1389
+
+S 70 3752 5859 7170 6712 2954 * 7060 2060 5495 5320 5449 6995 * 5748 4858 4743 3974 1983 5969 6079 70
+ 49 5282 7054 3802 107 1855 467 10173 1525 2031
+
+I 71 4567 5242 7165 4658 4041 * 3669 3061 5179 2686 5927 7181 6097 7323 4447 4841 3922 3112 5421 3148 71
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+
+V 72 5092 6694 * 7063 4772 7004 5101 2329 4697 3362 4727 4898 3710 5122 5874 4077 3964 2516 6768 4495 72
+ 21 7298 6959 1000 1000 1213 814 10174 1020 2007
+
+H 73 4902 * 5096 6966 6106 5032 1100 5452 4746 5329 5726 3764 3643 6015 6162 4080 7052 6957 7140 4357 73
+ 70 6080 4954 2413 300 2411 300 10196 1320 1685
+
+P 74 5467 * 5542 3209 6590 5822 5914 * 3748 7048 7062 5474 1027 5433 4822 3156 7287 5428 * * 74
+ 116 5552 4152 0 * 2192 356 10173 1363 2231
+
+S 75 4894 * 2622 3353 4991 3335 5329 5332 3588 4313 5934 3007 6640 3592 4466 4139 6060 4852 * 7151 75
+ 68 * 4451 * * 3946 97 10240 0 3083
+
+Y 76 5739 5864 6844 * 1829 7070 4310 6744 6960 4070 6871 5815 5974 6709 5719 5230 6648 6959 4803 1366 76
+ 163 3545 5564 1145 868 4325 74 10254 2398 3698
+
+N 77 6540 6615 2276 3625 4842 5084 5273 * 4579 4501 * 2655 6645 4834 3078 3675 3971 4534 * 6993 77
+ 61 5451 5766 1204 821 2642 252 10100 1258 3914
+
+S 78 3273 * 4396 3281 4805 3466 4708 5786 4118 4516 5098 4877 2973 4886 4450 4011 4502 5347 4560 5723 78
+ 51 5939 5785 4589 61 2200 354 10257 1153 3766
+
+N 79 4531 6895 3795 3121 5805 2907 4494 5285 4536 6728 * 3925 3329 4328 4798 3704 3823 4893 6085 4617 79
+ 67 5256 5700 1840 473 4058 89 10309 1345 3455
+
+T 80 3536 7138 3514 4203 5910 3744 5323 5780 5906 4203 6765 4250 4105 4936 3815 2623 3223 4985 5804 5881 80
+ 215 4038 3692 1752 508 1426 672 10297 2175 3649
+
+L 81 5691 * 4860 4845 3622 3381 5439 4018 5308 3020 4945 4845 4079 4249 4488 4030 4750 4027 5667 3351 81
+ 96 4181 6795 2825 220 1196 827 10199 1997 3923
+
+N 82 4374 * 2679 3658 5219 3920 4350 5530 4218 5053 * 3794 5808 4342 4783 3200 3761 4450 * 3942 82
+ 74 4551 7035 1698 532 337 2262 10278 1659 2852
+
+N 83 4729 7017 3609 5626 4263 3612 3379 6850 5185 5433 5330 2150 5512 4851 4930 3419 5868 5773 * 3401 83
+ 21 6102 * 2322 322 937 1066 10231 1164 1434
+
+D 84 5801 * 679 5388 * 4367 5340 * 5823 6805 6183 2773 * 6904 5408 7222 6498 5939 * 6985 84
+ 33 5455 * 4350 73 957 1044 10240 1351 1123
+
+I 85 6079 7245 * * 3983 * * 1795 * 1706 5851 * 6004 * * 7020 * 2056 6083 5332 85
+ 0 * * * * 0 * 10358 0 1000
+
+M 86 537 5067 * 6822 * 4032 * * * 5886 5061 7146 * 6942 * 4249 7804 3444 * * 86
+ 0 * * * * * * 10363 0 0
+
+L 87 6001 * * * 5353 * * 2205 * 1126 4260 * 6521 * 6836 * 7051 2283 * * 87
+ 0 * * * * * * 10363 0 0
+
+I 88 6918 5331 * * 4467 6521 * 1877 * 1439 5374 * * * * 7223 * 2116 6923 * 88
+ 13 6836 * 3322 152 * * 10363 1028 0
+
+K 89 * * 6903 2454 5474 7085 5015 * 1756 4606 6167 6146 * 3949 2615 5195 4368 3783 7210 * 89
+ 10 * 7251 * * * * 10363 0 0
+
+L 90 6900 * * * 5080 * * 3728 * 485 4441 * 6047 * 7566 6949 4688 4084 * * 90
+ 32 6906 6167 2000 415 * 0 10243 1011 1000
+
+K 91 3341 * 2550 3459 6511 5789 * 5415 3565 5460 * 3242 5084 4476 4039 2988 3789 5912 * 5381 91
+ 44 6120 6015 3401 143 * 0 10231 1135 1273
+
+S 92 5293 * 3380 2565 * 3864 5080 * 3114 5877 * 3949 5520 4236 3992 2939 3693 5032 6138 5389 92
+ 0 * * * * * 0 10208 0 1605
+
+A 93 3300 * 2913 3598 * 5797 * * 3791 5963 * 4089 1719 5206 3862 4048 4795 6190 * 6923 93
+ 7 * 7765 * * 2421 298 10208 0 1605
+
+A 94 3471 * 7021 * 3257 * 5374 1974 5821 2282 * 7004 4772 * * 5602 6678 2534 6871 4659 94
+ 131 4450 4597 698 1383 1241 793 10327 1877 1621
+
+S 95 3989 * 3633 3375 6977 4706 5912 6837 3640 4348 6940 3975 2974 3981 3889 4685 3187 3803 * 6805 95
+ 336 5656 2414 1264 777 2065 394 10298 1284 2237
+
+L 96 4368 5829 6623 5748 1812 5111 6737 3275 * 3469 4698 5167 4300 5671 5525 4666 5018 4536 6600 3232 96
+ 148 3362 * 1895 452 1455 654 10354 2469 5143
+
+N 97 3629 * 3194 4886 * 3817 7018 6798 3743 5784 6357 3268 4146 5151 5249 2563 2466 5756 * * 97
+ 49 5873 5950 975 1025 2021 408 10339 1134 3835
+
+S 98 3647 * 2834 3137 6946 4125 4963 5189 3330 5227 * 3657 3282 5831 4066 3523 4959 5143 * 6898 98
+ 0 * * * * 1522 617 10237 0 3436
+
+R 99 4689 7082 4190 5495 3995 3338 3610 * 5510 4732 * 3616 4923 4731 4218 3832 3511 4346 5965 2788 99
+ 34 5422 * 1338 727 481 1819 10275 1280 2614
+
+V 100 2700 * 6774 6874 4344 4873 5458 2363 6625 3178 * 6884 5613 7255 * 5629 3362 2375 5098 4948 100
+ 47 4959 * 1546 605 * 0 10325 1537 1371
+
+A 101 3874 6492 4777 3779 5456 4243 5883 4462 3508 3884 5868 5572 6885 3144 3078 3458 4225 4188 7207 4894 101
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+//
+�HHsearch 1.5
+NAME 757d964661b62316dff0960e2a4a87ea
+FAM
+FILE 757d964661b62316dff0960e2a4a87ea
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:41:44 2013
+LENG 201 match states, 201 columns in multiple alignment
+FILT 134 out of 974 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
+HHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEEECCCCCEEEEEEEHHHEEEEEECCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
+C
+>ss_conf PSIPRED confidence values
+9988699998999999999999998398889999999999999999957998433561220188867988877668999999999811389999999999
+9998578778689998870368877760799987875999838996068896279917887359889999836765399984559999999999999984
+9
+>Consensus
+xxxxxxxxdxxxxxlxyxQxxxdvlxgxxxxxxxxxxxLaAlxxqxxxGdxxxxxxxxxxxxxxxxxPxxxxxxxxxxxixxxxxxlxgxsxxxAxxxyL
+xxxxxxpxyGxxxfxvxxxxxgxxxxxxxxLgIxxxGIxxxxxxxxxxlxxxxxxxIxxxxxxxxxxxixxxxxxxxxxxxxtxxxxxixxlixxyxxxx
+x
+>757d964661b62316dff0960e2a4a87ea
+SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYV
+KLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDII
+L
+>gi|72124671|ref|XP_790458.1| PREDICTED: similar to myosin regulatory light chain interacting protein [Strongylocentrotus purpuratus]gi|115963894|ref|XP_001177677.1| PREDICTED: similar to myosin regulatory light chain interacting protein [Strongylocentrotus purpuratus]
+------------RHLFFHDAKLLVKEEKIKAALKDAARLAALFTQAEKGDFgASN--DVELLagYFPQFADSE----EFKVTAQAEYARLRSMKVEHALL
+SLLREICEMDSYGLNTFTAKTCS-GQ----LCEVGVGAHGILVTNIETQD-CVKIPLSSVKRLSVEKRDCQMHYelddGHNfttdkmeltlhtkeiaegl
+yrsiteKVEFFTSETVSEPVKDQFVRD------
+>gi|47215134|emb|CAG02558.1| unnamed protein product [Tetraodon nigroviridis]
+--------NELYVSMHYNQVLPDYLKALLSIVpqgkaseqqLQQIARLAALQHRAKDSIYLPTV-----REAQECVPPPFYSKQNpqlwLNVTTQHMQHV
+QPLNPHQARAQFLGLVSAFPMFGSSFFYIQSCS-SASIQAPCVLAVNLNGLHFLNKDTHEAVVHFPLKEIqSTRTQRPtsgssyPYVDIMIGDLLNqRIT
+QLQLEQGLELCRVIAMHVENML
+>gi|195118260|ref|XP_002003658.1| GI21679 [Drosophila mojavensis]gi|193914233|gb|EDW13100.1| GI21679 [Drosophila mojavensis]
+--------DETSRHNYYLQLRHNVLQRELPrdHADQALVMLAGYALQADLGDAPTIaaaaeetheeqaatagtsrngrstgmtttlpkirkrlssynerm
+lrlstyvtstsqtatkreaapacpvpsNSSTDYFRMEDYLPATLHTDWAKSELRACHREHKGLAQAEAELMYIQQACSLhETINAHTFRMRLAK-SEVGV
+GSAWFVIYAKGIKILGSGAGAEPATFLWPHITKLSFERKKFEIRSGESRITLYAASDEKNKLLLTLCKDTHQ---
+>gi|324502376|gb|ADY41046.1| Pleckstriny domain-containing family H member 1 [Ascaris suum]
+-----SSETPAERLFLVHRMANEIVAGRIPMSNELAEELAAVYAQMHYGDIG-dSITDEQLRtVTISYFPAKMLDVGCertlRLNIQSHWTQLRGTSPAD
+CVRMILVVLRKWRFFGAHITEARMKMRNDE---RIFIALNDQGVHLLTVRQLDVIRSFPYHRLVSFGGYHNDFMLTVDRilppeaHPeetareRLTFSMP
+PRAIDQLTCHLAEYIR---
+>gi|241998718|ref|XP_002434002.1| focal adhesion kinase, putative [Ixodes scapularis]gi|215495761|gb|EEC05402.1| focal adhesion kinase, putative [Ixodes scapularis]
+-----YEKDPVLFAYFYKQVQSDFLVKCNDIDQDLAIHLCCLEIRRFWKDMTHAalDKKSNYelIekeiGLHKFLPANVITSNKvgllFCWISNAKVACS
+YYCHNTELFdksKLYGSFSIRLTFLFFSSLCLFQT-GWS--VPVELVVNQElGIGYLTDRKGLTNHIANFQQVQSIQtiv-NDasp-KpvLQLKIaGASE
+vrfPFLFPIpWAITGFSFLRLI--WGAEF-
+>gi|145541975|ref|XP_001456675.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124424488|emb|CAK89278.1| unnamed protein product [Paramecium tetraurelia]
+------YQDQVRMQYILLQFFEEIRELKFLLNREKLFLYIAFYLIIKRQEVK-------HENISKYLKSEIFDQIEphrwEVEVKRYITqinsQLLQL-E
+TEkkSMVylcqyqflknIYYEKEATMNIYKLEVHRELQAA-FSKLKVpDikgnIYIGLSQAKISLLTPLDKKVIQEIQYQEIDNIQSFPNKLVIRTKsnI
+P-EKGWKFITFQSYEIKMLINFYKEL--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 * 1037 * * * * * * * * * * * * * 964 * * * * 1
+ 0 * * * * * * 1729 0 0
+
+D 2 * * 400 * * 2046 * * * * * * * * * * * * * * 2
+ 0 * * * * * * 2686 0 0
+
+Q 3 * * * * * * * * 2046 * * * * 982 * * 1992 * * * 3
+ 0 * * * * * * 2686 0 0
+
+N 4 * * * * * * * * * * * 2748 1817 * * 2821 * * * 1232 4
+ 0 * * * * * * 3893 0 0
+
+V 5 * * * 2743 * * * 3606 * 2099 3768 * * * * * * 2115 * 2116 5
+ 0 * * * * * * 5346 0 0
+
+D 6 * * 897 * * * * 4540 * 3291 4493 4521 4658 * * 4321 * * * 2832 6
+ 0 * * * * * * 6630 0 0
+
+S 7 4426 * 4258 4943 5393 4412 * 3606 4041 2476 * 5304 2112 * 5052 3392 5135 5745 * 4438 7
+ 33 * 5479 * * * * 7741 0 0
+
+R 8 3948 5653 4391 2409 * 6238 5860 * 3409 * 5961 5932 3480 3042 3311 3566 3510 4704 * * 8
+ 83 4163 * 434 1946 0 * 8325 1271 1000
+
+D 9 * 5979 585 4206 * * 4457 * 6203 * * 3697 * 4617 * 4109 5126 * * * 9
+ 23 5953 * 2000 415 * * 8553 1035 0
+
+P 10 4090 * 3595 3204 * 6204 5428 5092 4450 5249 * 6137 1223 4571 4087 4151 * 6383 * * 10
+ 0 * * * * * * 8690 0 0
+
+V 11 3673 6456 4585 4008 5832 6549 6643 3107 3947 4188 4380 5222 * 5744 5416 3979 3244 2157 * 5490 11
+ 0 * * * * * * 8775 0 0
+
+Q 12 2091 6724 * 3032 4553 6653 * 5606 6488 4516 5004 * * 4442 3893 4355 2296 4465 6497 4254 12
+ 0 * * * * * * 8883 0 0
+
+L 13 5672 * 5634 * 3390 * 6624 3268 4660 1916 5560 * * 3655 2435 6353 3684 3819 * * 13
+ 104 3841 * 4132 85 * * 8963 1903 0
+
+N 14 5742 * 3928 2580 5885 * 2658 4613 4140 4077 * 3485 * 3987 4067 6552 4659 * 6570 2801 14
+ 41 6595 5803 0 * * * 9095 1014 0
+
+L 15 * * * 6785 3223 * 5074 4377 * 1197 4220 5633 * 3835 5729 5806 5054 5824 4970 3190 15
+ 0 * * 0 * 0 * 9136 1000 1119
+
+L 16 5329 * 7297 6141 2729 * 5230 3256 * 1651 3752 6710 * * * 4856 4767 5247 * 2535 16
+ 0 * * * * * * 9213 0 0
+
+Y 17 4468 5915 * * 1408 * * * * 4710 * * * * * * 6733 5151 * 1042 17
+ 0 * * * * * * 9257 0 0
+
+V 18 4144 5516 3866 5443 4471 6794 4591 4352 5383 1683 5392 4627 5784 4437 4994 5200 5894 5023 4892 3613 18
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+Q 19 7020 6485 4121 3818 * * 3464 * 5893 * * * * 527 6800 4906 6805 * * * 19
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+
+A 20 2110 5884 * 5299 6427 5681 * 3043 * 1861 5455 6563 * * * 4574 4150 2814 * 5354 20
+ 0 * * * * * * 9281 0 0
+
+R 21 3876 * * * 6427 6475 5890 4578 2077 3444 6803 7097 * 5246 1872 5786 4920 2887 * 5706 21
+ 0 * * * * * * 9281 0 0
+
+D 22 5319 6986 3342 2504 4990 7232 3285 * 3095 5281 * 3884 4976 3506 3753 3687 5638 * 6759 4643 22
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+
+D 23 3926 6823 1230 3188 5881 4873 4904 * 5313 3629 * 3602 * 4429 6827 4668 6483 * * 6546 23
+ 11 * 7031 * * * * 9259 0 0
+
+I 24 * * * * 5314 * 6571 2169 * 2304 4968 6797 * * * * 6897 1528 6131 2952 24
+ 10 7222 * 0 * * 0 9254 1005 1000
+
+L 25 3865 7036 * 5963 5750 * 5708 3827 3968 1316 4908 6041 6743 7505 3917 4242 5446 3060 * 6811 25
+ 0 * * 1000 1000 0 * 9242 1000 1145
+
+N 26 4601 5311 4134 2598 6776 6035 3871 7521 3661 4379 7143 3385 6801 4642 2573 3397 4257 * * 5708 26
+ 39 5221 * 832 1190 * * 9259 1315 0
+
+G 27 5263 6907 3765 3823 * 707 5614 * 6574 4743 * 5234 * 5210 * 3703 * * * 6612 27
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+
+S 28 6913 5896 4756 3205 6792 5561 4075 6900 2681 4045 5702 4381 5293 4804 2169 4554 4458 6044 5642 4615 28
+ 0 * * * * * * 9264 0 0
+
+H 29 * 4605 * * 3100 * 5073 3161 * 1636 6494 6631 * * 6136 5848 6111 3374 6648 2283 29
+ 89 4067 * 181 3087 * * 9264 1857 0
+
+P 30 3853 6197 3998 5500 4799 * 6772 3551 4227 3316 7058 6071 2092 4358 4236 4892 4390 3644 * 5151 30
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+
+V 31 4060 1867 * 7116 6841 5352 7132 3744 7031 3040 4174 5770 4625 * 5932 5325 6179 2123 * 6006 31
+ 48 4939 * 1883 456 * 0 9260 1383 1000
+
+S 32 5108 6798 3012 3640 * 4862 6871 * 4550 5488 6768 3849 3363 6682 4115 2215 2445 7030 * * 32
+ 51 4839 * 1824 479 * 0 9260 1516 1000
+
+F 33 4955 6691 3346 2371 4812 6957 5455 4626 4596 3386 * 4262 3788 4962 3083 4064 4605 4703 * 6857 33
+ 22 6034 * 3245 161 * 0 9260 1110 1000
+
+D 34 3949 * 2035 1699 * 7197 5898 5183 3059 6841 5871 4781 6804 4298 4945 4842 7096 7230 6819 * 34
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+
+K 35 4205 * 2390 2493 5719 * 6794 5683 3968 3402 5982 4851 * 3257 5724 5359 3816 3293 * * 35
+ 38 5268 * 378 2117 * 0 9267 1306 1000
+
+A 36 1439 3738 * 5625 * 5383 5468 4300 5938 3165 4633 6929 * * 7114 3907 6885 3487 6794 3614 36
+ 24 5903 * 1334 729 * 0 9267 1138 1000
+
+C 37 2681 5375 * 5452 3824 * 7246 2503 * 2591 5790 6450 6253 5768 * 3829 5824 2554 5952 4565 37
+ 13 6822 * 0 * * 0 9267 1000 1000
+
+E 38 5124 * 5869 2502 7562 6640 5084 5406 3086 2894 4111 * 5774 3075 3411 4958 3621 4699 * 5945 38
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+
+F 39 5744 * * * 4375 * * 3465 * 425 4155 * * * * * 7532 5317 * 6469 39
+ 21 * 6085 * * * 0 9267 0 1000
+
+A 40 822 4012 5933 * 6797 3115 * 6458 * 5338 * 6798 * 7143 * 3666 4335 4859 * 5899 40
+ 0 * * 0 * 1419 676 9259 1000 1228
+
+G 41 676 6362 * * * 3434 * 6557 * 6819 * 6202 6508 * 6887 2603 7121 5313 * 5644 41
+ 12 * 6887 1000 1000 898 1110 9265 1000 1089
+
+Y 42 * * * * 2902 * 7082 3852 * 900 5677 * * 6770 7555 6796 6706 6446 * 2400 42
+ 8 * 7521 * * 765 1281 9257 0 1118
+
+Q 43 2262 5807 6560 5192 4930 5917 4193 3636 6742 2778 6012 7274 * 2311 4547 4626 6792 5924 6815 4186 43
+ 0 * * * * * 0 9262 0 1108
+
+C 44 2524 6101 * * 4522 6188 4965 3340 5905 1483 3613 * * 6994 5799 5474 5882 4123 * 4478 44
+ 23 * 5971 * * * 0 9262 0 1108
+
+Q 45 5194 * * * 4204 * 4517 4922 6486 5237 6682 5354 * 762 3198 6853 5106 * * 4899 45
+ 44 6709 5617 2322 322 1064 939 9253 1036 1377
+
+I 46 1404 6989 6734 5799 5632 7338 6737 3061 * 3421 4642 * * 6842 6370 4237 5722 2344 * 6912 46
+ 22 * 6065 * * * 0 9219 0 1556
+
+Q 47 4983 * 2612 1533 5182 6775 5812 5957 3927 3894 6785 5245 * 5170 5723 5040 4034 4257 6761 5613 47
+ 24 * 5908 0 * 2962 198 9224 1000 1804
+
+F 48 4699 5348 5385 4550 2232 6180 4185 4698 5053 2490 6971 6718 * 4904 5109 5648 4435 3840 6700 3102 48
+ 29 6703 6640 0 * 1416 678 9203 1051 1952
+
+G 49 4472 * 4757 4796 * 583 * * 6346 4925 * 6482 4640 5076 5735 4869 5760 6993 * 6826 49
+ 134 3965 5343 1180 840 1513 622 9223 2030 1708
+
+P 50 5748 * 974 3033 * 6543 * 6826 5751 * * 2929 4051 * 6969 3603 5653 * * 6614 50
+ 77 5306 5227 1597 579 3141 174 9199 1283 1955
+
+H 51 5205 5127 5850 6602 2829 5672 3437 4860 4599 3635 6716 5786 5828 4548 5849 4123 6650 4366 4847 1989 51
+ 68 4722 6926 1911 446 1448 658 9162 1445 2328
+
+N 52 5305 5822 2883 4529 6708 5302 7060 5341 3225 4685 * 2555 3783 5106 5642 2978 3602 4215 * 6605 52
+ 55 * 4731 * * 2016 410 9205 0 1927
+
+E 53 3626 * 4053 2565 6665 4880 7079 5354 4313 4703 * 4942 3374 4387 4208 2564 3465 5241 * 6882 53
+ 50 5687 6125 1839 473 * 0 9103 1174 2290
+
+Q 54 4260 * 2926 2920 4845 4486 4805 5347 3889 4943 * 3848 5747 4040 5109 3110 3848 4755 * 4502 54
+ 211 5473 3136 1000 1000 2148 369 9095 1198 2500
+
+K 55 5736 * 4770 3148 5109 6956 4638 4557 2396 4396 6587 3717 4697 3325 3848 5648 3477 4565 * 5144 55
+ 453 3334 2553 990 1010 3283 156 8993 2364 3833
+
+H 56 4547 5076 4363 3576 6293 * 1748 4837 4557 4446 6352 5148 5012 5308 5588 2695 4709 6262 5287 6306 56
+ 205 3503 4495 2148 369 1184 837 8757 1983 5119
+
+K 57 4508 6646 3468 * 5491 4293 5982 3304 3217 2785 6652 6589 4425 4781 4247 5417 3243 3098 * 6498 57
+ 78 4239 * 1581 587 1490 635 8891 1693 4084
+
+P 58 3006 5285 5881 4451 * 4684 * 5883 4085 4546 * 6799 1899 3972 4119 3664 3416 4307 6952 * 58
+ 68 * 4434 * * 2515 277 9060 0 3091
+
+G 59 4954 * 2641 3050 * 2399 5266 * 3212 5693 * 5028 6793 4362 4193 3302 3823 5694 * 6714 59
+ 287 5650 2639 626 1506 1679 540 9037 1133 3298
+
+F 60 4913 5558 * 5736 2435 6687 4215 4330 6464 3147 5480 4874 * 5568 * 5422 6422 4440 5168 1653 60
+ 386 2951 3244 811 1217 1731 517 8923 2512 4379
+
+L 61 5656 6420 4236 3329 3100 4783 * 4116 4287 1588 6191 * * 4565 5152 4056 * 3941 6352 * 61
+ 166 3199 * 2158 366 376 2125 8926 2348 4460
+
+E 62 3950 * 3080 2999 7128 4807 6615 5510 4022 3320 * 3247 5811 4694 3678 3229 4648 4278 6758 6949 62
+ 177 3202 7191 1292 757 3007 192 9212 2720 1845
+
+L 63 4968 * 4024 4483 4852 5198 5894 2820 5033 1910 4781 5635 4087 4564 * 4630 6928 3289 6548 5274 63
+ 31 6172 7086 3714 114 1834 475 9238 1160 1861
+
+K 64 3847 6611 4971 2342 4462 4349 5975 6979 2766 4517 6089 5793 4576 4953 3598 3679 3863 6049 * 5023 64
+ 61 * 4587 * * 2613 257 9331 0 1721
+
+D 65 4060 6082 4031 3911 5380 5820 4305 * 2993 3921 6559 4253 5252 3422 2726 3330 3908 6173 * * 65
+ 22 6022 * 1253 784 1765 503 9268 1356 2371
+
+F 66 5943 4241 * * 1913 * * 3673 6891 2256 6556 * * 5650 * * 6979 4117 6748 1923 66
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+
+L 67 5545 4898 6713 6832 3416 7039 6575 2467 * 1701 4976 * * 5762 * 6814 6919 2293 6101 4623 67
+ 25 6802 6885 1000 1000 * 0 9314 1000 1952
+
+P 68 5322 * 6981 6698 * 5056 5907 * 6425 * * 5482 332 6883 6820 4463 5677 * * * 68
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+
+K 69 2924 * 3772 3420 * 7378 6555 5374 2706 4861 * 4438 3072 3348 3658 3316 7275 7267 * 5846 69
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+
+E 70 4892 4521 4250 3295 7145 3877 3510 5324 4217 5928 5771 5915 4650 3682 3322 3458 4241 5433 3878 5468 70
+ 118 * 3669 2585 263 2310 325 9296 1000 2218
+
+Y 71 5840 5822 6975 6624 3430 * 6752 2893 5185 2609 3272 6256 6450 6729 5517 7124 4084 2191 7426 3868 71
+ 195 4642 3530 3186 168 3978 95 9321 1558 3165
+
+I 72 4054 6810 6656 5038 3916 * * 2268 4960 1859 6832 * 4978 4090 4153 4259 5850 4001 * 5549 72
+ 28 5722 * 2164 364 1516 621 9165 1148 4041
+
+K 73 3453 * 3616 4036 5666 4530 5745 4567 2961 6401 6873 3892 5339 3786 3056 2940 4254 5886 6766 * 73
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+
+Q 74 4088 7024 4659 4277 * 4259 4650 5349 3059 3855 6073 2849 3914 3353 6049 3092 4677 4398 * * 74
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+
+K 75 4245 5865 4221 3706 * 5140 5222 4659 3217 4273 5093 3903 7070 4670 2850 3841 5910 3475 5904 3812 75
+ 127 3689 7285 2400 303 1760 505 9352 2173 2384
+
+G 76 4365 5984 4169 3683 4107 2870 4596 5989 3209 4739 5991 3979 4738 4825 4865 3403 4457 6965 3982 7125 76
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+
+E 77 3277 * 6239 2566 5783 4242 6780 4737 3210 3793 7242 7543 5482 3822 2801 4971 4429 3767 * 5899 77
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+
+R 78 4789 7529 3802 2787 * 4947 5668 7139 2413 4840 6788 5360 7026 2940 2880 4222 4079 4643 * * 78
+ 0 * * * * 2743 233 9386 0 1742
+
+K 79 3726 6981 3655 2592 * 7495 4468 7042 3209 3381 4825 4259 * 4670 2484 4110 5437 5494 * * 79
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+I 80 4033 * 6769 * 4829 * * 1316 6039 2801 5245 * * * * 5761 6583 1843 * * 80
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+
+F 81 3281 * * 4259 4462 6799 7666 3166 3754 2520 5699 4904 4435 4143 4527 4023 3847 4024 6607 5371 81
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+
+M 82 3503 * 3561 2721 * 4968 5382 6588 3512 4362 5719 4685 7186 3191 3261 3019 4185 6835 7140 * 82
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+
+A 83 2613 4684 * 3652 4917 5827 4115 3893 3969 3569 4072 5018 * 3054 4502 4848 5311 5638 6919 4291 83
+ 0 * * * * * 0 9384 0 1635
+
+H 84 7016 6533 * * 3795 * 1289 4902 * 3417 7594 * * 5360 5351 6371 * 5859 3168 2486 84
+ 10 7233 * 2000 415 * 0 9384 1000 1635
+
+K 85 3060 * 5950 3904 6186 5419 6657 6330 1961 6024 7099 4488 6318 3284 2806 3640 4390 5186 * * 85
+ 61 4595 * 1509 624 * 0 9384 1685 1635
+
+N 86 3690 6885 3545 3738 7600 5037 6004 6138 2508 4930 6132 3537 6812 2969 3769 3055 4627 * * 6923 86
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+
+C 87 5553 4655 * * 3539 6767 3399 3575 6199 1233 5224 4364 * 4635 5073 5279 * 4960 * 5448 87
+ 57 4697 * 2236 344 * 0 9384 1720 1635
+
+G 88 3053 5309 5853 3794 5377 4457 5228 4817 2672 6580 * 5240 3879 3693 2703 4120 4848 4376 * * 88
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+N 89 4229 5869 4735 5067 6659 1086 6859 5555 4269 * * 3360 5578 4321 5852 3795 4583 * * * 89
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+
+M 90 6737 5760 * 4250 6960 * 5374 3553 4457 1904 2682 4860 6568 3883 4936 5869 4038 3703 5859 5946 90
+ 65 5430 5578 1229 803 2347 316 9393 1321 1625
+
+S 91 6376 7256 3513 5614 7330 4670 7240 6622 4469 6359 * 3911 4095 7039 5964 1609 1945 5821 * * 91
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+E 92 3605 * 4656 3533 * 6739 6050 7051 2912 6090 * 5738 2549 3213 3385 4441 3364 3899 6799 * 92
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+
+I 93 3038 * 4296 2682 6152 4383 4629 5044 4888 3525 5919 3551 5259 3936 4901 3550 3622 6093 * 6616 93
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+E 94 5250 6858 2742 1942 * 6316 5419 5915 4722 4123 5807 4645 6968 2947 5328 4567 3702 4669 6007 6225 94
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+
+A 95 685 3907 * * * 5823 * 6756 * 3402 * 7383 6759 5805 6077 4258 6879 3778 * 6954 95
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+
+K 96 5999 * 5044 2557 6815 * 5237 4780 1943 4452 2829 7101 * 4062 3344 * 5213 4320 * 5436 96
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+
+V 97 4646 5280 5897 4393 4743 5846 4708 3960 3458 2021 5866 5064 6815 6380 2918 4312 5009 5142 5923 4349 97
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+
+R 98 3185 6989 4557 3512 7132 4957 4237 5172 2179 4190 4475 4610 * 3292 4160 3866 * 5955 6932 5679 98
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+
+Y 99 6809 * * * 1399 * * 4928 * 3543 5878 * * * * * * 5319 * 1148 99
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+
+V 100 * 5796 * 6820 * * * 1969 * 920 4070 * * * 6806 * * 3311 * 5643 100
+ 0 * * * * * 0 9371 0 1367
+
+K 101 3926 * 3463 2214 * 6378 4763 7257 2955 4978 * 3343 * 2819 4010 4479 4298 6966 7409 * 101
+ 0 * * * * * 0 9371 0 1367
+
+L 102 5981 5481 7200 3491 4410 * * 2599 4148 1892 5737 7150 * 5236 4844 5986 3612 3609 7580 4148 102
+ 13 6749 * 3459 138 1533 612 9371 1025 1367
+
+A 103 1766 3128 * 6509 * 6754 * 3238 * 2838 6065 * * 6762 * 5458 5024 2193 5100 * 103
+ 25 5842 * 1805 486 808 1221 9391 1153 1192
+
+R 104 4180 5476 6887 4636 5600 5027 5825 6990 5460 5352 4629 5977 * 2446 1941 2582 5828 4982 5359 6818 104
+ 65 4515 * 0 * * 0 9404 1647 1000
+
+S 105 4305 * 4705 3344 * 4318 5087 6775 2407 5534 5494 4719 * 3165 3213 2898 3321 * * * 105
+ 11 7085 * 0 * * 0 9404 1000 1000
+
+L 106 7031 4497 * * 4255 * 4531 4974 5916 1405 4769 6186 * 5649 6216 3385 5309 4878 2631 5247 106
+ 10 7199 * 0 * * 0 9404 1000 1000
+
+K 107 4897 * 3157 3068 7120 7224 5313 * 4225 5607 * 5200 1064 5367 6079 5093 5705 5846 * 6435 107
+ 62 5285 5906 0 * * 0 9404 1422 1000
+
+T 108 6679 * 3874 5288 3866 3958 5739 5625 5533 2006 3691 5107 * 5183 6418 3284 2892 * 6984 3987 108
+ 0 * * * * 550 1658 9394 0 1309
+
+Y 109 4703 5967 * 6736 1688 * 6010 * * 6828 * * * * 5862 * 5782 5042 6256 936 109
+ 14 * 6736 * * * 0 9404 0 1000
+
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+V 111 3042 3647 * 5605 5949 4306 6871 4732 * 3775 4327 * 6685 4696 4955 2417 4603 2424 7340 4614 111
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+K 117 4878 7107 4316 3852 6007 5770 5311 5774 1955 4378 5662 5456 * 2980 4215 4818 3295 4139 6986 5023 117
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+E 118 5351 6099 2770 4445 4239 5972 5187 5851 4958 4190 4781 4211 4162 3499 3684 4590 4455 3483 7007 3819 118
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+K 119 3893 5603 4085 4219 4320 5602 5714 5556 2322 5051 5288 4567 5113 4472 3250 4109 4541 3453 * 5687 119
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+K 123 * 5689 4646 5207 5724 4661 5007 6568 2671 4113 * 4683 2683 4132 3789 3365 3511 3937 6049 6730 123
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+K 135 3258 5016 4548 3527 4910 6354 4811 4261 3851 3982 6087 5529 2274 4283 4579 4201 5710 6175 6059 5033 135
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+ 195 3359 5106 1410 681 0 * 9369 2502 1002
+
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+K 146 4615 5917 5344 4629 6818 3684 4255 5632 1862 4847 4372 3779 7030 3879 3320 3853 5863 * 6813 5938 146
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+E 147 4479 6801 3678 1883 6070 5447 6602 4051 3544 4666 7054 4144 6990 3617 4593 3864 4209 4852 * 6490 147
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+I 149 6572 5253 * 5056 4041 6962 6088 2547 4861 1409 6108 * 6036 5539 5397 4834 4556 3482 7520 5619 149
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+
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+ 0 * * * * 348 2221 9232 0 1520
+
+N 156 4513 7062 2819 2084 * 5718 3877 * 4437 5993 6135 3385 * 4426 3105 3245 5237 5837 * * 156
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+I 157 * 5454 * * 4314 * * 975 * 2861 4295 * 6677 * 6522 * 6202 2429 * 6713 157
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+R 159 3570 5535 5278 4558 6747 4467 5781 6787 3178 5914 6164 2587 6598 4216 3932 2280 3570 6897 6860 * 159
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+W 160 5118 * 6843 * 3119 * 6726 3220 6727 2259 6031 * * * 7031 * 4921 2213 2236 5131 160
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+P 164 4692 * 2754 3744 * 3744 5659 * 2847 3965 6986 3793 3396 6814 3075 3786 * 5306 5031 6620 164
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+
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+ 46 4998 * 2868 212 * * 9325 1359 0
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+S 166 4262 5198 4254 4466 5223 5710 4254 4826 2437 6687 5526 5147 6547 4520 4384 2989 2650 5522 * 4799 166
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+
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+
+L 169 * * * * 3366 * * 1162 * 1791 4633 * * * * * * 2979 * * 169
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+
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+D 173 5086 6819 2739 3061 * 3975 4949 5301 4745 * * 2558 5476 5078 5007 3123 3471 3969 * 6420 173
+ 208 4037 3774 1906 448 * 0 9045 1724 1154
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+ 655 2105 2915 2760 230 2326 321 9084 3419 2189
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+Q 175 5454 * 3517 2783 * 6387 5229 4720 2826 5399 4780 6457 3732 4214 4479 3075 3495 3753 * * 175
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+G 177 4108 * 3976 3821 * 3528 4504 4216 4001 3557 5610 5750 6425 3989 4002 3676 3618 2953 6533 * 177
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+Y 179 5531 * 6150 * 1863 * 6272 2866 5688 2378 6271 6634 * 6747 6659 * 4864 4528 6053 2376 179
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+T 183 3662 5409 6339 6825 * 7146 6394 4335 5540 5340 5505 5678 5513 5484 6614 2420 1229 4259 * * 183
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+E 185 5474 6477 3135 3216 * * 5616 * 4103 5133 4102 4608 * 1607 4070 4117 3875 6583 6104 * 185
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+
+G 186 1356 3231 * 6287 * 2665 5796 4912 6597 * 5203 5075 4757 5222 4931 3737 * 4945 * 6634 186
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+
+E 187 3586 * 4969 2485 5796 6574 5707 5558 2173 5421 * 5623 5339 3939 3238 3821 * 5539 6104 3853 187
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+
+Q 188 3855 * 3197 2105 * * 6330 6281 4139 3470 6253 4714 * 3667 3601 5582 5766 3676 * 3517 188
+ 0 * * * * * * 9035 0 0
+
+I 189 4335 * * * 4851 * * 912 6272 2902 3324 * * 6037 * * 5524 3309 * * 189
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+
+A 190 2941 5474 3880 6427 * 6559 5219 4842 4247 3011 6332 4238 * 5052 6384 3154 4042 3400 2927 6394 190
+ 0 * * * * * * 9042 0 0
+
+Q 191 3969 5162 3086 3423 * 6194 4254 6318 3339 3536 5085 4829 * 3563 3670 2355 * 6614 * * 191
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+
+L 192 5339 * * * 3255 * 4765 3886 5118 767 4886 * * * 6356 6513 4402 4947 * 6257 192
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+I 193 * 2410 * * 4113 * * 1441 * 2453 6348 * * 6002 * 6235 6289 2987 * 5430 193
+ 0 * * * * * * 9011 0 0
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+A 194 3043 * 4672 4608 * 3831 6443 3984 3613 6724 6302 5031 6209 3797 2702 3293 3890 3369 * 6191 194
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+
+G 195 3456 * 2621 2725 4917 2769 5031 6005 5223 6376 * 6065 * 3468 4928 3193 4200 * * 5145 195
+ 0 * * * * * * 8855 0 0
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+Y 196 * * * * 3987 * 5137 * * 4047 * 4543 * 4182 5931 4898 5781 4777 6204 662 196
+ 0 * * * * * * 8822 0 0
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+I 197 5805 4692 * * 4868 5869 2386 1927 5666 3847 3199 * * 5163 5900 3975 4935 3951 5758 5994 197
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+D 198 3805 * 3798 2837 4429 4680 4539 5604 3586 * 5696 3208 * 3259 3640 3956 3454 * * 5928 198
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+
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+ 0 * * * * * * 7757 0 0
+
+I 200 * * * * 3834 * * 1803 * 2141 3005 * * * * * * 2868 * 2688 200
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+L 201 * * * * * * * 2727 * 856 * * * * * 2712 * 2799 * * 201
+ 0 * * 0 * * * 3966 0 0
+
+//
+�HHsearch 1.5
+NAME 75f1ddc04ebf9d5bc247ed264936c742
+FAM
+FILE 75f1ddc04ebf9d5bc247ed264936c742
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:56:49 2013
+LENG 168 match states, 168 columns in multiple alignment
+FILT 142 out of 811 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHCC
+CCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9887569999899996799987885696246870169999997499965589889966887798988774347876121777777422888999999759
+98999849899998836666402665443488308995689957717999999999999998653379
+>Consensus
+xxppxxxxxxxvLilGxxPxxxsxxxgxyYxxxxNxFWxiLxxxglxxxxxxxxxxxxLxxxxixlxdvvxRxxxxxxxxxxxexxxxxxxlxxxixxxx
+pkxIxxxGxxaxxxxxgxxkxxxgxxxxxxxxxxxxvlPStSpaxxxxxxxkxxxwxxlxxxxxxxxx
+>75f1ddc04ebf9d5bc247ed264936c742
+MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQ
+PQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR
+>gi|294951287|ref|XP_002786911.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]gi|239901489|gb|EER18707.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
+-FPPSIGDSPRVLILGSAPCEMSLEKGQFYGNPRNHFWAVMAYAmdDPTfPMLDFEARCSVLHSRGIALWNICdvfTRYKSSDATLHCEEYT----DIAG
+LLVEHpTIGYILCNGSASYDCMLKydlaaRLEVSTGLQPTPLSlatqargaaqavDLPvILKLPSTSPANAMadPVGTKGKVWKEKlQEAL-----
+>gi|326565388|gb|EGE15565.1| G:T/U mismatch-specific DNA glycosylase [Moraxella catarrhalis 103P14B1]
+-LPPFTPPNACVMMLGSFPPPPERwAMPFYYPNYNNDMWRILGLVFFDDAKrfidstnktFDQDAiEQFLTKTGIAIGDTAEqviRQKDNASDQFLQIVT
+P--ADIEKTLKQLpRCHAFITTGKKATEVLCqqfTSQKiPNIGEQVQlLIAnrRIDLYRLPSSSRAYPLAIDKKADFYRKVFETLGV---
+>gi|307106992|gb|EFN55236.1| hypothetical protein CHLNCDRAFT_134530 [Chlorella variabilis]
+-----GDAPLRLVIVGHNPSEHAWASSHFYSNPTNWFWRILRDTGIAPPAAisGAADDGKMPAvAGVGFTDVGSgAPGTDSSQFTAQDFEAWRPAFYQRM
+ATqarrasaaigctcgaCgAPCIVAFSGKRQFQELFaGaagggrgRskgaavaqaapaaagaagpplgegavaaaaapqqqqqqraptlqarrpRRVDTG
+RQwvlPEGWplpLDTEVWVMTSTSGAAPMTRQQRLAPWQALAERL-----
+>gi|325474169|gb|EGC77357.1| hypothetical protein HMPREF9353_01707 [Treponema denticola F0402]
+---AYVLENTNTLILGTFPGKKFTdpnkendKEDWYYGTDRNEFWALIEYAlGCKRNSlqTKNEKQKFLTEHKIGITDIIKKARRrqnnnLDINLNVIEI
+T----NLDFIIDKCkDIHTIILTSKDMYTRFFIpyyVKKYNaiFKedknKEPEtheekgkkiniyyyTFKGRPIRVVPLHSPARKNvSIKIKKALYKY--
+--------
+>gi|296444847|ref|ZP_06886809.1| Uracil-DNA glycosylase superfamily [Methylosinus trichosporium OB3b]gi|296257515|gb|EFH04580.1| Uracil-DNA glycosylase superfamily [Methylosinus trichosporium OB3b]
+------APGAPLMVLDFAPGEEDERSGEAFVGAEARLLDkMLKAIGQKR-------------ESAYLAYATPwRP-PGARELNAGEVTALQPFLRRHVEL
+AAPKILLILGDYAARAALGATDvakLRGQWFDYDAGASRPRALLASSLDNLLkTPALKRRAWRDLRA-------
+>gi|323452034|gb|EGB07909.1| hypothetical protein AURANDRAFT_64500 [Aureococcus anophagefferens]
+----------HTLILSTSSCSTDTFAGEYYARVDNAFWYIAGLRlGLTPERTmlgklnpannktahkipsnyaaafveehpkadYAQQCAALTGAGFGLW
+TVLSRCSVpdGHDKITAANSE--ANAIRALCEERGVtRVVLAEGTKCEQAFalFnedwlksglltlgpmdrlpggparfKQKKFDAVRGGAAAGGVELTV
+CISTQNAVKGLYADKRADWMR----------
+>gi|148269551|ref|YP_001244011.1| phage SPO1 DNA polymerase-like protein [Thermotoga petrophila RKU-1]gi|170288227|ref|YP_001738465.1| phage SPO1 DNA polymerase-like protein [Thermotoga sp. RQ2]gi|281411730|ref|YP_003345809.1| phage SPO1 DNA polymerase-related protein [Thermotoga naphthophila RKU-10]gi|147735095|gb|ABQ46435.1| phage SPO1 DNA polymerase-related protein [Thermotoga petrophila RKU-1]gi|170175730|gb|ACB08782.1| phage SPO1 DNA polymerase-related protein [Thermotoga sp. RQ2]gi|281372833|gb|ADA66395.1| phage SPO1 DNA polymerase-related protein [Thermotoga naphthophila RKU-10]
+------NLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLrESGIRRE-------------DVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEII
+NPDVIVALGATALSFLMdGKK-VSITKIRGNpIDwLAGKKVIPTFHPSYLLrNRsnELRKIVLEDIE--------
+>gi|255321596|ref|ZP_05362754.1| uracil-DNA glycosylase family protein [Campylobacter showae RM3277]gi|255301452|gb|EET80711.1| uracil-DNA glycosylase family protein [Campylobacter showae RM3277]
+------DKSAKVVFVFDAPNTAEDASGEFLAGDD-KFLqNLNELAGLKK-------------DEIYVTSLLKcK-P-AAKVPTNA-YELCEPYFSAEARL
+VAPKLIVALGEEVFYKMiKQSAqSFEtiRG-NI--MKFKHSALLATYSPTVVAkNPSKKELFFSDL---------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * 1908 2810 2772 1170 * * * * * * * * * 1
+ 0 * * * * * * 3012 0 0
+
+V 2 * * * * 1498 * * 5175 * 1128 5891 * * * * * * 2799 * * 2
+ 0 * * * * * * 6114 0 0
+
+E 3 4399 6435 3218 3207 6684 5510 6245 * 3571 * * 5020 943 * 6682 4806 * * * * 3
+ 44 5044 * 1093 913 * * 6711 1134 0
+
+D 4 4043 * 1727 * 6774 4649 * * * * * * 915 6362 * * 5388 * * 5509 4
+ 0 * * * * * * 6677 0 0
+
+I 5 6415 * * 6657 2913 * 5144 1692 * 2840 5318 5132 * * 5566 5721 * 2545 6446 3447 5
+ 0 * * * * * * 6732 0 0
+
+L 6 5928 6961 * 5980 3940 4271 7019 2121 * 1646 * * * * * 6745 5044 2618 5916 3911 6
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+G 143 4212 * * * * 2143 6516 * * 5667 * 5574 962 * 3902 4955 5663 4806 * * 143
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+
+L 144 905 * 6384 5335 6288 7207 * 7434 * 2856 6352 4112 6087 5070 3562 4795 6530 5675 * * 144
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+R 146 1397 6145 6311 * * 7238 * 6255 5164 3058 5843 6094 4090 6988 3600 6123 3180 3058 * * 146
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+ 1844 485 7189 146 3373 0 * 7680 5731 1053
+
+S 148 4527 * 4644 * 7036 5015 5489 * 3366 5909 * 2477 3600 5339 3903 2028 2896 6797 * * 148
+ 141 5356 3862 344 2236 1977 423 7501 1136 1490
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+E 150 2730 * 3397 1624 * 4609 * 5277 3662 * * 5521 4533 4324 5273 3038 6104 7149 * * 150
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+
+Y 156 * * * 6524 3081 * * 5540 5870 4272 * * * * 4820 * * * 957 2119 156
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+
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+D 160 2643 6993 5644 6315 3438 4923 6632 4400 2688 2181 5957 * * 3295 3840 6363 6024 6954 6638 7031 160
+ 21 6136 * 1585 585 * * 7153 1000 0
+
+Q 161 3919 * 3615 1902 6038 4273 * 5974 3022 5997 * 4127 4129 3307 4327 4260 4451 * * * 161
+ 145 3389 * 2407 301 * * 6538 1225 0
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+A 162 1940 * 5135 * 2874 4422 5069 3680 4003 3637 5271 * 5613 5347 4132 * 3486 * * 4059 162
+ 0 * * * * * * 5804 0 0
+
+L 163 2632 5345 * * 4222 * * 4076 * 985 4765 * * * * 4908 * 2990 * * 163
+ 0 * * * * * * 5540 0 0
+
+V 164 * * 4479 3311 * 1513 * * 4169 4084 4424 * * 4129 3307 2925 * 4234 * * 164
+ 126 3577 * 0 * * * 4631 1000 0
+
+V 165 3185 * * * * 3367 * 2477 * 2523 * 4195 * * * * * 1377 * * 165
+ 0 * * * * * * 3685 0 0
+
+R 166 * * * * * * * * * * * * * * 1000 1000 * * * * 166
+ 0 * * * * * * 1475 0 0
+
+G 167 * * * * * 0 * * * * * * * * * * * * * * 167
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+R 168 * * * * * * * * * * * * * * 0 * * * * * 168
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 79b1bbcf6f43d0235bc61bef7593bdbe
+FAM
+FILE 79b1bbcf6f43d0235bc61bef7593bdbe
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:20:58 2013
+LENG 178 match states, 178 columns in multiple alignment
+FILT 116 out of 250 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
+HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9730599999999999999983677777788999997319999999999999998299999999852889874899999999997379998999999999
+999999999984885689999999999999989999998798989999969971889999899998886431023578
+>Consensus
+xxxxxxxxtxxLxxdYIxyrlxxxgxxxxxxxxxxpxxxxxxxxLrxxgdelexxxxxxfxxxxxxLxitxxxxxxxFxxVaxelFxdginWGRIvaLxx
+FxgxLaxxxxxxxxxxxvxxIxxwxxxylxexlxxWIxxxGGWxxxxxxfxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+>79b1bbcf6f43d0235bc61bef7593bdbe
+ATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFV
+FGAALCAESVNKEMEVLVGQVQEWMVAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRLEHHHHHH
+>gi|30851239|gb|AAH52690.1| Bcl2l10 protein [Mus musculus]
+-------RTRRLLSDYIFFCAREPD------TPEPPPTSVEAALLRSVTRQIQQEHQEFFSSFCE----S--rgNRLELVKQMADKLLSkdQDFSWSQLV
+MLLAFAGTLMNQGPymavkq----krdlgnrvi---VTRDCCLIVNFLYNLLMgrrhrARLEALG--gwDGFCRFFK-----------------------
+----
+>gi|312377925|gb|EFR24635.1| hypothetical protein AND_10635 [Anopheles darlingi]
+----VIQQGKRLCGEYIRARLKRSGLLNRkilqrlrnsivpdgasAGIgsvGGgsgmmliagggGAVVREAFPILHGMGIELERMHPRLYTNVSRQISne
+pwgelTEPDTVGYLLHIVAKDLFKTGVTWGKVISLFAIVGGLAVDCVRQDHTDYLQQLIEGTTDVIEEDLAGWLVERGGWLGLQDHVYPQPAEITLTGWL
+TIT------------
+>gi|47213719|emb|CAF95150.1| unnamed protein product [Tetraodon nigroviridis]
+-----DSDTRQLVSRLMADVTGISRAQWR-------ESR-ALATTKRVVGDLMEKHRYTYRGMINKLFMEDRVgDVSFVGAVAKSTFEDGNtNWGRVASL
+LAFAAVVAQYLNDHGQRDCVEQVAQEISTYLLTDQRDWLIKNNAWDGFVEFFQVPDPESTVRT-----------------
+>gi|9188120|emb|CAB97205.1| BHP1 protein [Suberites domuncula]
+-------QSACLSYHLTYYLLNQGGIKLNGYAGNGRTShtrnrltndkkfREAISTLESSCKQMKSKYQQEIEGLVKTLDISDTQLYTNFQHAANSLMDG
+DIRWGRIAVLFFFTSVLAKRLHKDGHSHQISSLIGWLTTFLNDNATSWILENGGWAAIKDSV----------------------------
+>gi|125812975|ref|XP_001343654.1| PREDICTED: apoptosis regulator BAX-like [Danio rerio]
+----------------------------------DPSHKDAIECMVRIANEMEGNE--ELQGMLNSALLNPT--LEHYILVVNGTFSDVtLSWGSVVALF
+YVACRFVVKAAEINSVDLVRSIINWTMPFIRKtCILTWIREQGGWGAIRSYFGTPT------------------------
+>gi|308497734|ref|XP_003111054.1| CRE-CED-9 protein [Caenorhabditis remanei]gi|308242934|gb|EFO86886.1| CRE-CED-9 protein [Caenorhabditis remanei]
+----------GFVVrnlkkyfripkflkaDYFTYRIEQSGLDWYDAPALPDGVQDEFKMMRSLATIFEKKHTEELENCSEQLLAVPKLTFHLYQEVAKFF
+DRsigpghCSMSYGHLIGLISFGGMVAAKMMGTaELQGQVRNLLLYTSLFIKTRIRqCWKEHDRSWAGFMAL----------------------------
+-
+>gi|194382608|dbj|BAG64474.1| unnamed protein product [Homo sapiens]
+---QVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPemvtlplqPSStmgQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATRYP---
+-----------------------------------------------------------------------------------------
+>gi|311256133|ref|XP_003126516.1| PREDICTED: apoptosis facilitator Bcl-2-like protein 14-like [Sus scrofa]
+----------------------------------------IVELLKYSGDQLERELKKDSILMTS---FQDGLSYSVFKTITDQFLRGVDTRGEsEVKAQ
+SFKAALAIDAMAKLTtiDnHPMNRVLGFGTKYLKENFSPWVQQHGGWEKVLG------------------------------
+>gi|4590358|gb|AAD26543.1|AF120456_1 Bcl-2 homolog [Papiine herpesvirus 1]gi|9802029|gb|AAF99596.1| BHRF1 [Papiine herpesvirus 1]
+----------------------------------------------ALLEQIIVQNEDAFAETLDRFLLNTEDLDLDFSRVFAEIFHnEDPTLGRGLAWL
+AWCMHACRTlCGDTNCPYYVVDLAvRGMLE-ASEGLDGWIGQH-gGWPAVLR------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 0 * * * * * * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+T 2 * * * * * * * * * * * * * * * * 0 * * * 2
+ 0 * * * * * * 1000 0 0
+
+P 3 * * * * * * * * * * * * 0 * * * * * * * 3
+ 0 * * * * * * 1748 0 0
+
+A 4 1804 * * * * * * * * * * * * 487 * * * * * * 4
+ 0 * * * * * * 2527 0 0
+
+S 5 * * * * * * * 2419 * * * * * * * 2421 * 675 * * 5
+ 0 * * * * * * 3325 0 0
+
+A 6 1494 * 2856 * * 3049 * 2848 * * * * * * * * 3236 2827 * * 6
+ 0 * * * * * * 3981 0 0
+
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+
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+ 0 * * * * * * 5977 0 0
+
+T 9 3032 * * * 5826 3002 * 4028 * * * 3708 * * * 2789 1383 4429 * 5450 9
+ 0 * * * * * * 6621 0 0
+
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+
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+
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+
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+ 0 * * * * * * 6821 0 0
+
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+
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+
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+
+V 17 * * * * 3548 * * 967 * 2444 5485 * * * * 5747 4968 2773 * * 17
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+
+G 18 4543 5566 3766 4088 4032 4310 4249 * 4727 4184 * 4228 5747 3097 2822 3398 4068 4695 * 5419 18
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+
+Y 19 4667 * 4385 3900 3566 4787 3394 * 5968 5367 * * * * * 4652 5257 * 6035 975 19
+ 0 * * * * 1808 485 6771 0 1269
+
+K 20 * 4008 * 5207 * * 5669 * 1910 4385 * * * 3861 1312 * * 3244 * * 20
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+
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+
+R 22 4375 * * 4320 5521 3076 5617 * 3255 5843 * 4186 * 2551 1859 3335 5757 * * * 22
+ 0 * * * * * 0 6835 0 1242
+
+Q 23 5687 * 5394 3577 * 5521 5597 4306 2461 3885 * 5872 * 1944 2475 4252 5553 * * * 23
+ 53 5617 6017 2000 415 * 0 6835 1000 1242
+
+K 24 * * 3918 2693 * 4707 5180 * 3612 * * 3163 3206 4406 3151 1990 * * * * 24
+ 127 * 3572 * * * 0 6812 0 1293
+
+G 25 5223 * 5677 * 5736 961 * 4504 5528 * * 2993 7511 5285 3285 4482 5126 5466 * * 25
+ 220 5223 3124 0 * * 0 6752 1000 1561
+
+Y 26 5013 * 5391 4060 3275 * 6031 2714 * 1772 4153 4922 * * 5236 5284 5188 5207 * 2993 26
+ 194 3337 5207 1663 547 1497 631 6530 1223 1933
+
+V 27 3762 6103 5361 3149 4175 4335 3765 4264 3855 3134 * * 4483 3463 4255 4380 4403 3679 * * 27
+ 70 5494 5308 1585 585 3862 103 6659 1003 1664
+
+C 28 7495 2235 5384 3749 * 6651 4259 4415 5089 3598 * 3915 * 5168 3341 5708 4751 5015 2452 * 28
+ 117 5426 4199 4322 74 * 0 6622 1000 1687
+
+G 29 3250 6200 4205 4600 5395 2432 * * 4609 * * 5062 3848 * 2520 3203 4425 4091 * 4375 29
+ 683 3318 1853 3499 134 * 0 6517 1351 1857
+
+A 30 2744 5497 3916 4130 * 2261 * 4827 2972 5126 * * * * 3980 * 3240 3265 * 4967 30
+ 181 3081 * 3692 116 1426 672 5933 1199 2615
+
+G 31 3699 4246 4186 3889 5816 2607 * * 3957 3548 6035 * 5603 4437 3725 3329 4234 5472 5688 3968 31
+ 153 4408 4231 2003 414 964 1037 6544 1056 2027
+
+P 32 3379 * 6170 3483 * 6269 5713 4669 6026 5589 * 3014 1677 * 5478 4881 2769 4228 * * 32
+ 148 4438 4291 1074 930 1870 461 6812 1184 1681
+
+G 33 3467 * 4228 6280 * 2536 * * 3407 4120 5960 * 2519 4793 3596 4052 5445 3660 5556 5250 33
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+
+E 34 3472 5913 5336 2909 5200 4155 * 6027 5949 2427 5238 4750 4180 3270 4782 4517 3558 * 5233 5602 34
+ 342 2898 3705 2589 262 1644 556 6930 1560 1580
+
+G 35 4190 3930 2462 4665 * 2295 * 4882 5879 3786 * 5723 3035 5634 5732 3757 5127 5412 * 5295 35
+ 86 4694 5682 2398 303 1322 737 6913 1078 1676
+
+P 36 4135 * 5447 4756 * * 6046 6197 * 4566 5662 4380 749 5689 4629 3742 * 6065 * * 36
+ 149 5015 3896 2655 249 901 1106 6910 1192 1479
+
+A 37 2490 * 5250 3798 5803 3819 * * 4787 6083 * 4855 2466 4431 4179 3580 3325 3580 * * 37
+ 96 4581 5476 1803 487 2631 254 6948 1147 1428
+
+A 38 3450 5825 4302 4893 * * 4899 3580 5124 6365 6421 5806 2769 3719 5684 2502 3188 3463 * * 38
+ 158 3660 5351 2676 245 1355 715 6805 1325 1420
+
+D 39 6188 * 3920 3828 * * 4929 5993 3444 * * 3393 5977 3514 2722 2296 3126 4607 * * 39
+ 121 4975 4355 1032 968 3140 174 6891 1209 1317
+
+P 40 2751 4862 3793 2723 * 5784 * 6391 2648 * * 5947 2213 6763 3452 6270 4663 5721 * * 40
+ 95 3967 * 1823 479 796 1238 6936 1215 1501
+
+L 41 2610 * * 3494 * * 6299 3327 6527 2356 * 5316 6556 * 5357 4424 4028 1938 * * 41
+ 31 * 5557 2484 284 507 1755 7116 1032 1176
+
+H 42 1796 * * * 4203 4342 4033 4313 5548 3672 * 4728 5681 5345 * 2760 6830 3027 * 4787 42
+ 80 4657 6143 1787 493 1265 776 7117 1158 1105
+
+Q 43 2675 5704 5514 2541 7073 5171 5348 6165 4812 3968 * 4715 4028 3767 2805 4012 5497 4503 * 6249 43
+ 0 * * * * 779 1262 7211 0 1105
+
+A 44 3320 3966 6386 3646 * 6295 6008 5609 4837 3338 3869 4590 * 5660 4602 4037 2218 3125 * * 44
+ 39 5216 * 3122 176 0 * 7224 1127 1003
+
+M 45 * * * * * * * 3760 * 568 2842 * * * * * 6224 3546 * 6261 45
+ 0 * * * * * * 7231 0 0
+
+R 46 3269 * 5216 6487 5106 5392 4566 5047 3376 3918 5598 * * 4607 1044 6296 * 6489 * * 46
+ 0 * * * * * * 7227 0 0
+
+A 47 3937 5479 5256 3823 5665 5510 4113 4895 2890 6203 7275 4917 * 3674 2275 3320 4482 5119 6651 5274 47
+ 28 5720 * 1803 487 * * 7366 1043 0
+
+A 48 3025 6304 * * 6817 * 5910 2283 * 1954 4218 6260 * 6477 * 4230 5576 2163 * * 48
+ 0 * * * * * 0 7363 0 1000
+
+G 49 2167 3760 * * * 1267 5921 * 6189 5022 * * * 6413 * 3550 5462 3221 * * 49
+ 20 6190 * 1000 1000 * 0 7364 1000 1000
+
+D 50 3807 * 1316 4121 * 3932 * 6675 6574 4226 * 3501 * 4652 4847 3693 4024 5993 * 6276 50
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+
+E 51 5288 * 2912 1017 * 4656 * 3590 7168 5911 * 6583 * 2906 5407 5357 6729 * * * 51
+ 18 6319 * 0 * 0 * 7376 1006 1000
+
+F 52 5329 * * * 2459 * * 2399 * 1184 3606 * * * * * 6206 4123 * 6579 52
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+
+E 53 * * 3438 1126 6622 * * 4253 5453 3084 5299 4283 * 3674 5311 4938 * 4908 * * 53
+ 0 * * * * * * 7389 0 0
+
+T 54 3982 6868 3915 2658 * 4893 * 4917 3124 5934 6532 4829 6328 3248 2272 3599 5174 5341 * * 54
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+
+R 55 3567 5863 5217 4294 * * * 5041 1904 4178 3330 3594 * 4053 2419 5254 6375 * * * 55
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+
+F 56 * 6293 6168 4424 3470 5928 1893 6325 * 3849 6138 3626 * 5449 4813 6194 6498 6771 * 1829 56
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+
+R 57 4589 * 4186 2731 * 4705 6715 6653 3405 * * 6067 2423 3338 2627 3191 5106 * * * 57
+ 26 6563 7157 1585 585 1190 832 7322 1000 1114
+
+R 58 4368 * 3001 3163 6649 4326 3895 3433 4455 4876 * 5342 3577 3782 2963 4678 5469 * * 4485 58
+ 16 6480 * 1000 1000 428 1961 7404 1000 1069
+
+T 59 3432 6505 4931 2659 2734 * 5395 5553 5543 2416 5948 6368 5574 4824 4987 4901 3260 4405 * * 59
+ 50 4873 * 725 1340 0 * 7441 1115 1000
+
+F 60 6558 6577 * 6331 1102 * * 3685 6300 2290 6477 * * * 6631 6350 * 4910 * 2848 60
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+
+S 61 3690 7493 3864 2899 * 5205 4796 5433 3866 5642 * 3128 5405 3343 2644 3491 4463 6891 * * 61
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+
+D 62 5896 6200 2625 3911 * 3263 4227 6448 4717 4317 * 2672 5531 4453 3124 3238 4684 * * * 62
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+
+L 63 4450 4398 5725 * 4318 5905 * 3176 * 2237 1803 * * * 6420 6236 5035 3126 5138 6225 63
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+
+A 64 2901 2884 4596 5682 6846 4776 * 3299 * 2885 5949 * 4696 6265 4809 2683 4942 3644 5970 * 64
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+
+A 65 5087 * 3374 2790 * 6864 4773 * 3162 4977 * 2707 5428 3296 2956 3613 5086 5458 * * 65
+ 208 4337 3563 1807 486 * 0 7359 1250 1230
+
+Q 66 5037 * 4755 4171 * 5314 4213 5185 3347 5113 4244 5715 * 2093 2638 3433 4749 4914 * 6216 66
+ 109 4098 6126 241 2698 3807 107 7187 1197 1875
+
+L 67 5245 * * * 3700 * * 3248 * 791 4068 * * 5960 5872 * 6355 3872 5500 5785 67
+ 65 5374 5660 3809 107 2371 310 7199 1069 1853
+
+H 68 5779 6019 2187 3998 6423 3458 3885 5695 5561 3608 * 2738 4590 3801 5706 4118 4986 5655 * * 68
+ 102 4708 5046 2398 304 1732 517 7189 1207 1821
+
+V 69 4461 7014 5782 6042 4186 4392 * 1884 5846 2359 5072 * 4857 * 4565 6742 5100 2632 * 5553 69
+ 104 4376 5548 919 1086 653 1457 7231 1406 1689
+
+T 70 5022 6183 3392 3864 * 6502 5899 * 5907 * * 3160 6695 4412 5288 2332 1781 4295 * 6331 70
+ 71 6509 4760 0 * 539 1682 7315 1000 1337
+
+P 71 4024 * 3606 3242 6784 5883 7363 6869 3770 4185 * 5890 1734 5763 4155 4071 3696 4561 * 6544 71
+ 72 5425 5284 1938 436 2650 250 7328 1154 1320
+
+G 72 4995 6467 2273 2543 7131 3453 4939 7157 5340 4973 6368 4797 5335 5503 3590 3125 3665 * * 6286 72
+ 80 5331 5119 1633 561 843 1176 7316 1121 1391
+
+S 73 3874 5593 4046 6892 5364 6766 5041 4710 4655 3741 5844 2598 6639 5236 6041 3151 2137 4283 * * 73
+ 63 5036 6370 672 1424 2296 328 7348 1174 1300
+
+A 74 1673 6470 4444 3956 * 4974 * 4887 5962 3660 * 5068 3907 * 5242 3552 3630 3120 * * 74
+ 131 3529 * 1107 900 0 * 7342 1487 1310
+
+Q 75 6346 3795 4672 4667 3797 4109 4277 5215 3981 3553 6486 * 7182 3588 3813 5792 6818 4282 6617 2189 75
+ 15 6563 * 2322 322 * * 7427 1000 0
+
+Q 76 4949 * 3395 2278 * 4597 5817 5603 4074 5079 * 7455 4021 3447 3504 2600 4014 6011 * 6895 76
+ 82 5758 4776 611 1535 * * 7427 1105 0
+
+R 77 3511 * 4489 5528 4364 * 5735 4606 4311 3204 4786 4558 * 5631 4149 3943 2401 2740 * 5677 77
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+
+F 78 6264 6777 * * 668 * * 4471 * 3292 6661 * * * * * * 3783 * 3073 78
+ 16 6529 * 0 * * 0 7392 1000 1173
+
+T 79 4164 * * 5366 4082 4609 5331 4170 3315 3381 4594 3752 * 3485 4807 3255 3782 3673 5818 5117 79
+ 0 * * * * 0 * 7445 0 1173
+
+Q 80 3223 7006 4229 2998 * 3594 6963 4977 4077 6894 * 4001 * 3561 3227 3025 3062 6454 * 6870 80
+ 15 6636 * 0 * * * 7595 1000 0
+
+V 81 5598 7001 * * 5163 6068 * 1972 * 3490 4267 * * * * 6877 5138 1011 * * 81
+ 0 * * * * * * 7595 0 0
+
+S 82 1322 4973 * 6663 4849 4027 * 6618 * 3560 3484 * * 7023 6639 4530 4284 2691 6553 * 82
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+//
+�HHsearch 1.5
+NAME 79cba631d7059d8c2467baa2b9e42370
+FAM
+FILE 79cba631d7059d8c2467baa2b9e42370
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:20:42 2013
+LENG 77 match states, 77 columns in multiple alignment
+FILT 173 out of 1097 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+98887776330133188985887888875552566377643210234446667135327778999866677888788
+>Consensus
+xxxxxxxxxxkxxlCxxxxxxgxCxxGxxCxfxHxxxxxxxxxxxxxxxxxxCxxfxxxGxCxxGxxCxfxHxxxex
+>79cba631d7059d8c2467baa2b9e42370
+GSHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTED
+>gi|255724312|ref|XP_002547085.1| hypothetical protein CTRG_01391 [Candida tropicalis MYA-3404]gi|240134976|gb|EER34530.1| hypothetical protein CTRG_01391 [Candida tropicalis MYA-3404]
+--------KDTIKLCASLIDPedEsvVCSAgGaENCKFHHDVVSYL-ESKPEDIE-GVCPVFEAIGYCPSGIKCRWLKS----
+>gi|124088676|ref|XP_001347192.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|50057581|emb|CAH03565.1| hypothetical protein PTMB.368c [Paramecium tetraurelia]
+-----NEEKKKTEICKNFLFKGSCKYQENVQIIKisVHSPMETTNQeIEYLRMRTSKQSHArtiislelapmdqgVNTCTRKQRTR-LNGG---
+>gi|302851829|ref|XP_002957437.1| hypothetical protein VOLCADRAFT_98560 [Volvox carteri f. nagariensis]gi|300257241|gb|EFJ41492.1| hypothetical protein VOLCADRAFT_98560 [Volvox carteri f. nagariensis]
+----------AANTPQPIAGRPDVPRDpwktvvvKNVPWAAGEEEIA------GFFAQAGqvvnvwrgtnnrdgrvqafthVQFETREGAERALQlhnCD
+FngrqvfvePSTAGT-
+>gi|303286099|ref|XP_003062339.1| predicted protein [Micromonas pusilla CCMP1545]gi|226455856|gb|EEH53158.1| predicted protein [Micromonas pusilla CCMP1545]
+----------RARLAANIDRRP----------LQGDTDKT------VYVRNLG------------------------
+>gi|116192477|ref|XP_001222051.1| hypothetical protein CHGG_05956 [Chaetomium globosum CBS 148.51]gi|88181869|gb|EAQ89337.1| hypothetical protein CHGG_05956 [Chaetomium globosum CBS 148.51]
+-----------DLGAGQLTP------GFSGRQSGAVKK-----------VNMpCKQFSMTGNIISSTD----------
+>gi|322699105|gb|EFY90869.1| CCCH zinc finger protein [Metarhizium acridum CQMa 102]
+-----------LQPCKTFSTTGN-------RYFQMDRT-----------SALSK---RDSPETRGWLWVYTNDDT--
+>gi|61675708|ref|NP_035876.2| probable E3 ubiquitin-protein ligase makorin-3 [Mus musculus]gi|341940956|sp|Q60764.2|MKRN3_MOUSE RecName: Full=Probable E3 ubiquitin-protein ligase makorin-3; AltName: Full=Zinc finger protein 127gi|32452060|gb|AAH54771.1| Makorin, ring finger protein, 3 [Mus musculus]gi|74147940|dbj|BAE22320.1| unnamed protein product [Mus musculus]
+--------WTKQILCRYYL-HGQCKEGDNCRYSHDLSGRRR--------SRGGQ-DAQPRASADRGPKMATRWE---
+>gi|328856795|gb|EGG05915.1| hypothetical protein MELLADRAFT_29924 [Melampsora larici-populina 98AG31]
+--------LHAKTVCKHWL-RGLCKKGNSCEFLHEYNLRTMPecwffgkygfcsngdecmylHVDERMRVLEC-MDYRRGFCSKGPTCSQKHIR---
+>gi|156101764|ref|XP_001616575.1| hypothetical protein [Plasmodium vivax SaI-1]gi|148805449|gb|EDL46848.1| hypothetical protein, conserved [Plasmodium vivax]
+--SLIKKQFFKTKMCPFQKNKNYCLNESNCHYAHSIDELKPM--PDLRNTKLC-DYVKKKIPCRDENCKFAHDID--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 0 * * * * * * * * * * * * * * 1
+ 356 2195 * 3170 170 * * 2605 1106 0
+
+S 2 * * * * * * * * * * * * * * * 0 * * * * 2
+ 0 * * * * * * 3010 0 0
+
+H 3 2964 * * * * 3954 2336 * * 3214 * 3744 3164 * * 1665 * * * * 3
+ 0 * * * * * * 3825 0 0
+
+M 4 4662 3879 * 4256 * * * 4014 * * 2482 * 1308 3960 * 2931 * * * * 4
+ 0 * * * * * * 5118 0 0
+
+T 5 * * * 3975 4719 3900 4922 4857 * 4416 * 4457 2418 3868 4815 4679 2544 2557 * * 5
+ 0 * * * * * * 5846 0 0
+
+T 6 3800 * 4159 4102 4783 4213 * * 2969 * 5463 2392 * * 3137 3305 2801 * * 5359 6
+ 0 * * * * * * 6319 0 0
+
+S 7 6552 * 4636 3459 * 4742 3486 * 3382 4657 * 2461 2561 5925 5390 2582 5750 5718 * * 7
+ 15 6552 * 1000 1000 * * 6733 1106 0
+
+S 8 3050 * 5103 4041 4987 4669 6204 5340 4270 4404 6037 4068 3814 3712 3588 2437 5790 4152 * 5902 8
+ 0 * * 1000 1000 * * 7225 1000 0
+
+R 9 5830 * 4675 5087 3667 6747 4056 * 2128 4089 6632 3149 4638 6417 2470 4454 6667 * 4969 4808 9
+ 0 * * * * * * 7532 0 0
+
+Y 10 5448 * 4054 4966 3227 6800 5551 * 3726 3996 * 5854 3755 5675 3899 5181 4148 5778 5743 1686 10
+ 14 6731 * 0 * * * 7728 1000 0
+
+K 11 3951 * 5460 4120 6131 4128 7192 7126 1063 6909 * 5294 5881 5471 3340 3495 5417 * * 7208 11
+ 19 * 6260 * * * * 8082 0 0
+
+T 12 3673 * 5573 4228 * 5182 5998 4654 3338 4895 6004 5029 5223 3843 3667 3462 1936 4448 * 6310 12
+ 10 7229 * 0 * * 0 8237 1021 1124
+
+E 13 4625 * 5332 2966 * 4892 6540 4174 2808 4222 4596 4259 4033 3525 2845 * 3593 4415 * * 13
+ 0 * * * * 1631 563 8242 0 1216
+
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+ 9 7272 * 887 1123 0 * 8300 1090 1124
+
+C 15 5309 136 * * * * * 6606 * * * 7283 5958 * 6391 * * * 5637 * 15
+ 7 7732 * 2000 415 * * 8341 1000 0
+
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+ 0 * * * * * * 8341 0 0
+
+T 17 4293 * 3817 4987 2513 7464 3086 7754 3853 7036 7336 3468 5635 5653 4845 4210 4686 * 4948 2559 17
+ 0 * * 3585 126 * * 8341 1017 0
+
+Y 18 5843 * * * 1463 * 7124 3862 6861 3845 6216 6408 6248 7330 * * 6570 3753 3441 2033 18
+ 30 * 5614 * * * * 8341 0 0
+
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+ 610 7662 1557 2585 263 738 1320 8331 1000 1158
+
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+ 213 3445 4462 2287 331 56 4726 8264 1609 4616
+
+S 21 4177 * 6350 4854 5716 3187 3358 6280 3102 6188 * 2983 4238 4438 3809 4238 2542 * * 7188 21
+ 33 5480 * 3305 154 1292 757 8256 1251 1527
+
+G 22 5924 * 4981 4061 7023 685 7291 * 3404 * * 5171 5109 6396 4181 5948 5552 * * * 22
+ 73 4542 7280 2506 279 2026 406 8267 1358 1287
+
+R 23 4773 5848 4679 3939 4364 3852 4311 4605 3515 4855 * 4296 5419 4730 3194 2933 4729 3887 7428 4403 23
+ 41 7193 5575 1585 585 * 0 8212 1000 1383
+
+C 24 * 117 6813 * * * * * * * * 6909 * * * * 5648 5204 6187 * 24
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+
+R 25 4051 * 5664 5088 5090 7227 5414 5310 2789 4494 6077 4247 2751 4309 2516 3714 3702 6040 * 7106 25
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+
+Y 26 4637 * 6029 4041 3009 * 4605 5893 3174 4260 5708 3577 * 5744 2832 6473 6408 5187 5674 2275 26
+ 78 6393 4608 0 * 1232 800 8145 1091 1528
+
+G 27 5298 * 4544 4981 * 409 * * 5309 * * 5053 * 5113 5103 5835 * 5963 * * 27
+ 36 5360 * 2401 303 745 1310 8208 1171 1771
+
+A 28 4323 * 1590 3035 4965 5366 6180 6403 4067 5739 6388 3761 4090 5816 6467 3082 6404 6286 * 5687 28
+ 8 7482 * 1000 1000 * 0 8225 1000 1277
+
+K 29 3025 * 3862 4470 * 5206 6300 * 2800 5051 6301 2522 * 3936 2744 3099 4979 * * * 29
+ 8 7444 * 0 * * 0 8225 1000 1277
+
+C 30 6447 146 * * * 5594 * * * * 5739 * * * 6835 * * 4777 * * 30
+ 0 * * * * 1101 906 8225 0 1277
+
+Q 31 5546 * 5151 4288 6607 5039 3881 5845 2409 4464 * 5147 3472 4284 2247 3849 3862 7554 6726 7277 31
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+
+F 32 7267 7541 6995 * 870 * 7638 5909 6689 4832 * 7371 * 5835 * 6499 * 7918 4378 1838 32
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+
+A 33 1871 6845 6391 4776 6265 6127 5344 4689 5362 3079 7188 5493 6994 5055 5355 1824 6607 5249 * 5278 33
+ 6 * 7962 * * * 0 8253 0 1303
+
+H 34 5847 * 6719 * * 6037 160 * 5908 * * 5591 * 5716 7331 * * * * * 34
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+
+G 35 4898 5721 2090 4367 * 2365 6662 5207 4692 6208 6263 3459 3968 5379 7431 3345 5048 4193 * * 35
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+
+G 37 4040 7376 3359 2427 5090 4990 5530 5952 3078 5643 6621 4820 4012 4195 4201 3304 4245 4569 * * 37
+ 36 5342 * 2276 334 2545 271 8254 1428 1464
+
+E 38 3267 8492 3539 1661 * 4019 6722 7120 3045 5927 6421 5675 3927 5802 5502 3675 5278 6054 6070 7926 38
+ 139 4233 4688 2386 306 * 0 8265 1497 1375
+
+L 39 4431 5217 5246 5389 3419 5700 5336 4130 5336 2632 3985 5401 5703 3742 3984 4208 4525 4829 7622 3133 39
+ 64 4897 6667 2416 299 * 0 8135 1385 1842
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+R 40 4087 6925 * 4378 5350 7260 5688 4320 3251 2937 4132 5884 5748 4382 1937 4542 5192 4778 5294 6078 40
+ 227 4444 3324 2525 275 * 0 8128 1410 1966
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+Q 41 3048 * 4865 4426 4396 5194 5522 6256 3148 5103 4789 3614 4042 4223 3823 2980 3747 5085 * 6234 41
+ 109 5449 4324 3134 174 3420 141 7888 1189 2945
+
+A 42 2637 7253 4751 3786 7436 6350 4561 3896 4262 4565 4843 4381 3538 4719 4874 3532 3200 4226 * 6447 42
+ 567 2806 2459 3466 137 4169 82 7811 2210 3143
+
+N 43 3632 6945 4895 3860 * 5253 4159 5534 3533 4616 6159 2371 2760 4178 * 3732 4407 5462 * 5474 43
+ 620 1772 4147 4409 70 3967 95 7647 3102 4296
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+R 44 4802 * 2795 4422 6697 6263 4781 5937 2641 4814 5064 5331 4827 4173 2473 4832 5314 3543 * 5029 44
+ 369 2210 6697 3176 169 1607 574 7662 2456 4523
+
+H 45 7648 6504 3678 4426 5035 4669 3949 4309 2703 4443 * 3263 2354 5185 4052 5260 5169 5263 * 7089 45
+ 218 2882 7718 3223 163 2061 395 7849 2108 3584
+
+P 46 3991 6087 4718 2873 * 4877 6070 6602 5365 7225 * 5311 1348 4759 4995 3123 5463 5368 * 6664 46
+ 151 3329 * 2694 242 2132 374 7892 1899 3063
+
+K 47 4069 * 3404 4288 4611 4981 4926 4568 2576 3889 6884 4313 4270 4386 3040 4849 5140 5182 * 4599 47
+ 95 4087 7586 2443 293 3508 133 8050 1559 2624
+
+Y 48 5329 7174 2980 3991 3658 5508 6250 5459 5372 3515 6038 6067 4695 4997 4479 4261 5303 3703 4993 2327 48
+ 140 4706 4212 371 2142 2099 384 8082 1318 2624
+
+K 49 5811 * 3983 4962 5216 4089 6385 3953 1992 4126 7026 5943 5752 3784 2463 4395 4583 5507 * 6914 49
+ 182 3132 7814 3232 162 82 4183 8035 2005 2726
+
+T 50 3480 * 7491 4259 4986 3785 6372 4741 4082 5773 5489 6638 4383 4911 4309 3006 1819 4550 * 7114 50
+ 41 5174 * 1220 809 0 * 8308 1220 1079
+
+E 51 4033 * 5504 5034 4742 4172 6152 4525 2543 4794 5296 4380 4193 3633 2887 4241 3899 4322 7580 6754 51
+ 18 6353 * 0 * * * 8299 1061 0
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+L 52 4176 7195 5283 4563 7345 5572 * 2995 5347 2313 3641 7441 2908 5441 4442 4900 5464 2819 * 7535 52
+ 26 5835 * 524 1715 * * 8299 1147 0
+
+C 53 * 235 * * * 4766 * * * * * * 4892 7347 5850 5063 7207 * 6592 6709 53
+ 295 5956 2567 4392 70 * * 8299 1102 0
+
+H 54 5575 4221 5379 7355 5102 6349 5731 5239 2201 7053 7380 4533 2131 4724 3139 * 4119 4142 * 4626 54
+ 102 * 3869 * * 59 4648 8331 0 2858
+
+K 55 5374 * 3448 5490 3325 * 4196 5554 2901 4872 5341 3020 6734 3789 3762 3797 5639 4279 6937 3981 55
+ 78 6157 4704 2585 263 585 1586 8150 1095 1656
+
+F 56 6371 * 5279 * 1253 * 7963 6290 * 4039 6826 5702 * * * 5282 6986 4706 3537 1843 56
+ 149 * 3351 * * 3428 141 8197 0 1628
+
+K 57 3813 * 5011 3217 3527 6003 3218 4407 4452 3700 4295 5035 5404 3808 5751 4092 4725 5804 5730 3599 57
+ 91 5872 4506 0 * 380 2112 8128 1132 2534
+
+L 58 2891 * 4261 4118 5539 6416 * 5100 3598 2796 5241 4931 7236 2970 3751 4091 3261 5070 7367 * 58
+ 106 4227 5831 2684 244 471 1845 8235 1439 1857
+
+Q 59 4132 * 4992 7393 5303 4102 4742 6154 3398 4101 5104 4288 4528 3324 3374 3555 3027 4816 7529 4355 59
+ 8 7495 * 1000 1000 2927 203 8236 1000 1474
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+G 60 5723 7325 6345 4976 7253 531 7205 * 5064 * 6673 3886 * 5311 4724 4592 6954 7582 * * 60
+ 59 4959 6945 2168 363 1534 611 8235 1387 1404
+
+R 61 4752 6642 5104 5012 3278 3626 5153 5081 3299 5453 5252 3982 5620 4886 4156 3890 3849 4653 6553 2840 61
+ 9 7276 * 1000 1000 985 1015 8277 1021 1320
+
+C 62 5394 137 * 6134 * * * 6175 * 6003 * 6958 * * * 6028 * * * * 62
+ 6 8019 * 0 * * 0 8257 1001 1124
+
+P 63 4278 6178 7416 4265 6511 6003 5133 4859 2573 5973 7442 5768 2151 5341 2544 4906 3855 4900 7369 5975 63
+ 20 * 6151 * * * 0 8257 0 1124
+
+Y 64 4101 * 4653 5165 2695 6976 5092 * 4082 5368 5180 2709 * 4962 2485 4549 * 7391 * 2650 64
+ 40 7064 5649 0 * 1014 986 8265 1009 1313
+
+G 65 4493 * 6105 4918 * 409 6843 7534 5350 6929 * 6208 * * 5268 4254 * * 5946 * 65
+ 8 7476 * 0 * 926 1078 8251 1000 1337
+
+S 66 3940 * 2591 3686 7208 4273 * 4314 4472 3483 6725 4972 3785 4051 4776 3559 5489 3756 4965 5374 66
+ 18 7492 7255 0 * * 0 8256 1024 1124
+
+R 67 3856 6072 4315 4759 5637 5560 5406 * 2660 4815 5180 2868 6039 4883 2689 3475 3790 5207 * 6342 67
+ 43 5082 * 2059 396 * 0 8300 1211 1192
+
+C 68 * 127 * * * * * * 5944 5999 * * * * 6557 * 5851 * 6084 6691 68
+ 0 * * * * * 0 8271 0 1192
+
+H 69 4487 * 4800 6021 4966 7239 4826 7386 3579 5282 4301 4968 3542 3585 1540 4937 4700 5052 5797 * 69
+ 25 * 5851 * * 435 1942 8271 0 1192
+
+F 70 5910 6987 7509 7568 877 * 5035 5964 * 4466 5731 5896 * 7134 6136 * * * 5899 1974 70
+ 37 5291 * 2665 248 0 * 8247 1155 1156
+
+I 71 1988 5211 4616 5979 7318 4775 4966 5262 3909 2895 5396 5799 5246 6548 4860 2957 5013 4096 6666 5566 71
+ 10 7156 * 0 * * * 8303 1000 0
+
+H 72 6949 * 6540 * * 4198 381 * 5163 * 6969 4968 * * 5900 3756 * * * * 72
+ 0 * * * * 0 * 8253 0 1000
+
+N 73 4642 * 2658 4078 5706 2632 5652 4724 6062 7342 6970 6479 3731 6497 5578 2798 3144 3609 5838 * 73
+ 19 6275 * 716 1353 * * 8203 1073 0
+
+P 74 3769 * 3354 2763 6098 4603 4756 4536 4157 3923 5764 5018 3742 5941 3559 4152 5087 3413 7235 6353 74
+ 17 6410 * 1585 585 0 * 8140 1000 1000
+
+T 75 3518 6443 3383 3012 * 3886 * 6703 6331 5280 * 3700 3870 3479 4588 3392 2781 5620 6680 5748 75
+ 0 * * * * * * 7742 0 0
+
+E 76 5321 * 4361 627 * * * * 5166 * * 4211 5668 3829 * 5303 3613 * * * 76
+ 0 * * * * * * 6738 0 0
+
+D 77 * * 915 2386 * * * * * * * * * 1845 * * * * * * 77
+ 0 * * 0 * * * 4019 0 0
+
+//
+�HHsearch 1.5
+NAME 7aa7e6eee43e1aae66ded2fce9550a54
+FAM
+FILE 7aa7e6eee43e1aae66ded2fce9550a54
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:59:39 2013
+LENG 67 match states, 67 columns in multiple alignment
+FILT 101 out of 249 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEEEEEEEEEEEEEEECCCC
+>ss_conf PSIPRED confidence values
+9689999987998899999999999874013970999999999899797799999999999988889
+>Consensus
+VxKviElvgsSxxSxeDAixxAixxAxkTlxnixxxeVxxxxVxdgxixxxxyqvxlkVxFxxexxx
+>7aa7e6eee43e1aae66ded2fce9550a54
+VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAVEERTYQTEVQVAFELDGSQ
+>gi|89900230|ref|YP_522701.1| hypothetical protein Rfer_1437 [Rhodoferax ferrireducens T118]gi|89344967|gb|ABD69170.1| protein of unknown function DUF1458 [Rhodoferax ferrireducens T118]
+VAKVIEVSATSKISFEDAINQGITRACDTVSNVRgaWIKEQKVSIEDGRI--SAYRVNMQVTFVLGGD-
+>gi|332704415|ref|ZP_08424503.1| protein of unknown function DUF1458 [Desulfovibrio africanus str. Walvis Bay]gi|332554564|gb|EGJ51608.1| protein of unknown function DUF1458 [Desulfovibrio africanus str. Walvis Bay]
+VVKTIEIIAQSEKGFEDAVRTAVSEVAKSVRNIVSVWIKefEAKVENNQV--TVFRVTTKISFMVE---
+>gi|300311709|ref|YP_003775801.1| hypothetical protein Hsero_2394 [Herbaspirillum seropedicae SmR1]gi|300074494|gb|ADJ63893.1| hypothetical protein Hsero_2394 [Herbaspirillum seropedicae SmR1]
+TIEVIEVLAESDSSWRQAAQNAVHGAAVKIHNLRSLYVSdmEAVVADNKI--TRYRINAKISFLVD---
+>gi|297204099|ref|ZP_06921496.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]gi|197714765|gb|EDY58799.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
+TYRVTEIVGTSPDGVDQAIRNGISRASQTLRNLDWFEVTqvRGQIEDGQI--LHWQVGLKVGFRLDES-
+>gi|78189964|ref|YP_380302.1| hypothetical protein Cag_2011 [Chlorobium chlorochromatii CaD3]gi|78172163|gb|ABB29259.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
+IYKKVEMVGSSPNSIEDAINNAVAKAAETMHSIRWVEVAetRCHVENQKV--AYFQVTVKIGATLEE--
+>gi|256752056|ref|ZP_05492924.1| protein of unknown function DUF1458 [Thermoanaerobacter ethanolicus CCSD1]gi|320115951|ref|YP_004186110.1| hypothetical protein Thebr_1151 [Thermoanaerobacter brockii subsp. finnii Ako-1]gi|256749066|gb|EEU62102.1| protein of unknown function DUF1458 [Thermoanaerobacter ethanolicus CCSD1]gi|319929042|gb|ADV79727.1| protein of unknown function DUF1458 [Thermoanaerobacter brockii subsp. finnii Ako-1]
+VVKVLNVVGDSTVSWEDAIHKAVEEAAKSIDNISGIEVVnqTANVKNGKI--VEYKANIQIAYRADK--
+>gi|330508936|ref|YP_004385364.1| hypothetical protein MCON_3276 [Methanosaeta concilii GP6]gi|328929744|gb|AEB69546.1| Protein of unknown function (DUF1458) [Methanosaeta concilii GP6]
+VYRAIELVGSSPIGWEDAAKNAIDTAHKSIWNLRIARVAelDAKLdEKGNI--ILYRIKLRISLKYED--
+>gi|284165347|ref|YP_003403626.1| hypothetical protein Htur_2070 [Haloterrigena turkmenica DSM 5511]gi|284015002|gb|ADB60953.1| protein of unknown function DUF1458 [Haloterrigena turkmenica DSM 5511]
+--EIVELVGNSTESWEDAVQNAMDAADETIDHVSGVEIEseRIDREGRET--ERYVVTLEASIVPE---
+>gi|258654236|ref|YP_003203392.1| hypothetical protein Namu_4114 [Nakamurella multipartita DSM 44233]gi|258557461|gb|ACV80403.1| protein of unknown function DUF1458 [Nakamurella multipartita DSM 44233]
+VQKAIDLSGSG-ETIQDAVSEALDRARETLEGITRFEVKDItGIVDGPH--TAYQVEIRVWFTV----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 6549 * * * 4934 * * 2627 * 6753 * * * 5881 * * 2965 643 * * 1
+ 0 * * * * * * 4280 0 0
+
+F 2 2468 * * 6328 3529 * * 5328 * 3652 * * * 5413 * * * 2388 * 1318 2
+ 0 * * * * * * 4314 0 0
+
+K 3 6603 * * 4815 * 6790 * * 373 * * 6022 6708 6397 2879 * * * * * 3
+ 0 * * * * * * 4345 0 0
+
+K 4 4931 * * * 5312 * 5253 2469 2463 4534 7149 6035 * * * 6740 5681 1121 * * 4
+ 0 * * * * * * 4345 0 0
+
+V 5 6000 * * * * * * 1093 * 3768 * * * * * 4721 2778 1952 * * 5
+ 0 * * * * * * 4345 0 0
+
+L 6 5957 * 3503 340 * * * * * 5276 * 6670 * 6093 * * 4179 * * * 6
+ 0 * * * * * * 4372 0 0
+
+L 7 5060 * * * 5503 * * 1866 * 1251 5111 * * * * * 5943 2264 * * 7
+ 0 * * * * * * 4390 0 0
+
+T 8 * * * * * * * 2274 * 3342 * 6846 * * * 3355 2723 1226 * 6749 8
+ 0 * * * * * * 4390 0 0
+
+G 9 1896 5968 * * * 653 * * * * * * * * * 3658 * * * * 9
+ 0 * * * * * * 4390 0 0
+
+T 10 6446 * 4933 2881 5503 * * 5483 * 6777 6645 4092 * 4424 6048 1707 1643 6693 * * 10
+ 0 * * * * * * 4390 0 0
+
+S 11 * * * * * 4841 * * * * * * * * * 51 * * * * 11
+ 51 * 4841 * * * * 4390 0 0
+
+E 12 5277 * 2643 2437 * * * * 3517 * * 4417 2009 4868 5854 4024 2983 7082 * * 12
+ 0 * * * * 0 * 4347 0 1095
+
+E 13 * * 3708 2035 * * 6600 4768 2046 * * 3711 * 4769 6693 3552 3397 3516 * * 13
+ 0 * * * * * * 4390 0 0
+
+S 14 6720 * * * * 2567 * * * * * 4707 * * * 393 5515 * * * 14
+ 0 * * * * * * 4390 0 0
+
+F 15 * * * * 1744 * * 2330 * 5426 7136 * * 6772 * 4733 7023 3608 1616 6698 15
+ 0 * * * * * * 4390 0 0
+
+T 16 7078 * 1792 857 * * * * 4944 * * 7112 * 4496 6038 5913 4805 * * * 16
+ 0 * * * * * * 4390 0 0
+
+A 17 3170 * 521 3711 * * 6533 * 4892 * * 6377 * 4079 * * * * * * 17
+ 0 * * * * * * 4390 0 0
+
+A 18 0 * * * * * * * * * * * * * * * * * * * 18
+ 0 * * * * * * 4390 0 0
+
+A 19 2051 * * * 5968 * * 1515 * 6294 * * * * * * 4656 1555 * * 19
+ 0 * * * * * * 4390 0 0
+
+D 20 4307 * 3471 3414 * * 6679 * 2430 6034 * 3912 * 1901 2675 4433 5804 * * * 20
+ 0 * * * * * * 4390 0 0
+
+D 21 3844 * 4412 4053 * 5763 5060 * 3498 * * 1264 * 3916 6611 3836 4027 4008 * * 21
+ 0 * * * * * * 4390 0 0
+
+A 22 401 * * * * 2407 * * * * * * * * * * 4494 6656 * * 22
+ 0 * * * * * * 4390 0 0
+
+I 23 * * * * 5599 * * 1236 * 2695 5091 * * * 5060 * * 1552 * * 23
+ 0 * * * * * * 4390 0 0
+
+D 24 2455 * 2935 2291 * 6034 4048 6590 2901 * * 5497 * 4784 4177 3733 4817 5035 7023 * 24
+ 0 * * * * * * 4390 0 0
+
+R 25 4773 * 6062 2269 * 5220 4573 * 2851 * * * * 4601 1390 6640 3492 6388 * * 25
+ 0 * * * * * * 4390 0 0
+
+A 26 256 7043 * * * 5060 * 6057 * * * * * * * * 5757 3450 * * 26
+ 0 * * * * * * 4390 0 0
+
+E 27 2191 5854 4898 5295 * 3093 4932 * * * * 3364 * 5341 4395 1653 4047 7153 * * 27
+ 32 * 5503 * * * * 4390 0 0
+
+D 28 5410 * 4553 2456 * * * * 1045 * * 4483 * 3178 3862 6018 6360 6023 * * 28
+ 24 5899 * 2322 322 * 0 4364 1021 1051
+
+T 29 * * 6405 * * * * * 4443 * * * * * * 1936 555 * * * 29
+ 19 * 6276 * * * 0 4364 0 1051
+
+L 30 * * * * * * 6402 2280 5889 1164 4191 * * * * * * 1919 * * 30
+ 0 * * * * * 0 4346 0 1122
+
+D 31 6745 * 2805 3841 * 5187 3326 * 2446 6962 * 5328 6371 * 1548 4439 5364 * 6674 * 31
+ 0 * * * * 840 1180 4346 0 1122
+
+N 32 * * 3198 5874 * 2891 2974 * 4726 * * 885 * 6600 * 6741 * * * 6252 32
+ 0 * * * * 0 * 4373 0 1032
+
+V 33 * * * * * * * 1306 * 2066 3555 * 5503 * * * * 2002 * * 33
+ 0 * * * * * * 4390 0 0
+
+V 34 5904 7184 3026 3305 * * 6855 * 3112 * 5968 * * 3636 2007 3666 2793 4828 * 5341 34
+ 115 3711 * 1000 1000 * * 4390 1257 0
+
+W 35 6428 * * * 6650 2276 5503 4498 * * * * * 6262 5515 2539 * 4089 1185 * 35
+ 0 * * * * * * 4390 0 0
+
+A 36 2152 * * * 1601 6440 * 2832 * 4780 6446 * * * * * * 2026 * * 36
+ 0 * * * * * * 4390 0 0
+
+E 37 * * * 848 * * * * 4060 * * 4384 * 4301 4574 5749 6792 * 3200 3217 37
+ 118 * 3667 * * * * 4390 0 0
+
+V 38 * * 5541 4085 * * * 2532 * * 6705 * * * * * 6588 460 * * 38
+ 0 * * 0 * 0 * 4423 1260 1260
+
+V 39 4409 * 4279 5304 * * * 4585 2203 4911 6650 3995 * 3102 6977 5314 2864 2278 * 5787 39
+ 2557 269 * 980 1020 * * 4390 3725 0
+
+D 40 6913 * 2586 2751 * * * * 2919 * * 4505 * 5937 1614 4896 3014 * * * 40
+ 0 * * * * * * 4390 0 0
+
+Q 41 2047 5155 * * 5341 1805 * 4045 * 4212 4423 * * 5295 * 6303 6072 2286 * * 41
+ 153 3313 * 0 * * * 4390 1344 0
+
+G 42 5442 6760 3456 4230 * 2868 2464 4523 4210 * 6304 3236 * 4364 5220 4136 3719 3810 * 6755 42
+ 0 * * * * 0 * 4423 0 1260
+
+V 43 4734 * * * * * * 1944 * 3388 6440 * * * 5907 5503 * 845 * * 43
+ 102 3876 * 0 * * * 4390 1226 0
+
+E 44 4430 * 3228 1447 * 5387 * * 2942 6303 * 4471 * 4071 5048 4490 4318 3574 * * 44
+ 0 * * * * * * 4390 0 0
+
+I 45 6645 * 1081 3645 * 3301 6428 5295 4758 5341 * 2700 6118 5060 * 5836 * 5538 * * 45
+ 32 5495 * 0 * * * 4390 1061 0
+
+G 46 5067 * 4304 6969 * 668 * * 5341 * * 2615 * 5962 4691 4655 * * * * 46
+ 11 7040 * 0 * * * 4390 1000 0
+
+A 47 3703 * 5015 3383 * 4975 6015 * 1444 6992 6693 3513 5515 3336 3257 5130 * 6172 * 6880 47
+ 0 * * * * * * 4390 0 0
+
+V 48 * * * 6303 6880 * 5515 1246 * 4025 * * 5633 * * 4778 5907 1320 * * 48
+ 3803 * 107 * * * * 4390 0 0
+
+E 49 1607 * 1574 1574 * * * * * * * * * * * * * * * * 49
+ 0 * * * * 5343 36 1494 0 3989
+
+E 50 * * 942 1060 * * * * * * * * * * * * * * * * 50
+ 0 * * * * 62 4568 1948 0 3929
+
+R 51 2692 * 4221 4454 7004 5015 * 4479 4034 5578 5290 5397 5326 4714 3720 3825 2533 2747 * * 51
+ 0 * * * * 0 * 4368 0 1111
+
+T 52 3094 * 5819 2128 * 5201 2430 * 3432 5781 * 6262 * 6698 3450 4275 3739 5865 * 4186 52
+ 0 * * * * * * 4390 0 0
+
+Y 53 * * * * 2587 * * * * * * * * * * * * 6698 2743 568 53
+ 0 * * * * * * 4390 0 0
+
+Q 54 * * * * * 4753 5412 * 3352 5943 * * * 1209 1442 * * 5348 * * 54
+ 0 * * * * * * 4390 0 0
+
+T 55 2481 5208 * * * * * 3942 * 6590 6377 * * * * 5060 4503 661 * * 55
+ 118 * 3667 * * * * 4390 0 0
+
+E 56 6824 * 4399 3655 * 4866 4292 6064 3749 * * 2087 * * 3294 5507 2033 3540 * * 56
+ 0 * * * * * 0 4423 0 1260
+
+V 57 3335 4013 * * * * * 3819 * 1360 3187 * * * * * 6504 1956 * * 57
+ 0 * * 1000 1000 0 * 4423 1260 1260
+
+Q 58 5390 * * 2709 * * 6852 6057 848 7035 6986 5278 * 3772 3799 5546 4780 * * * 58
+ 0 * * * * * * 4390 0 0
+
+V 59 5197 * * * * * * 1684 * 3162 * 5029 * * * * * 946 * * 59
+ 0 * * * * * * 4364 0 0
+
+A 60 2371 6060 * * * 1996 * 5385 * * * * * * * 1655 2515 * 5358 * 60
+ 0 * * * * * * 4381 0 0
+
+F 61 6379 * * * 220 * * 5460 * 5600 6565 * * * * * * 5890 * 4096 61
+ 0 * * * * * * 4381 0 0
+
+E 62 4707 * * 2879 * 6921 6141 4710 2810 3358 6467 * 6609 * 2343 5831 2759 2826 * * 62
+ 0 * * * * * * 4381 0 0
+
+L 63 6389 * 5097 5849 6666 * 5866 3173 6422 1384 5791 * 4229 * 5890 * * 1997 * 3835 63
+ 22 6025 * 1000 1000 * * 4381 1010 0
+
+D 64 3852 * 1943 1347 * 5669 4732 * 3861 * * 4800 * 3813 5560 * 6585 6301 * * 64
+ 61 4593 * 552 1653 * * 4302 1036 0
+
+G 65 4903 * 1038 2964 * 3236 * * 4834 * * 4527 4490 5843 4963 3778 * * * * 65
+ 899 1108 * 1854 467 * * 3811 1189 0
+
+S 66 2671 * 2155 3263 * 2016 * * * * * * * * * 1905 * * * * 66
+ 0 * * * * * * 2682 0 0
+
+Q 67 * * * * * * * * * * * * * 0 * * * * * * 67
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 7bf67dbec14c0ea001ff88bc73dd7396
+FAM
+FILE 7bf67dbec14c0ea001ff88bc73dd7396
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:27:42 2013
+LENG 229 match states, 229 columns in multiple alignment
+FILT 167 out of 236 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEEECCCCCCCCCCCCCCCEEEHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCEECCCCCCCCCCCCCCCHHH
+HHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCC
+CCCCCCCCCCCHHHHHHHCCEEEEEECCC
+>ss_conf PSIPRED confidence values
+9734899996257874777999974531013234651467888989887422125645786257799984155567874200256888887778868778
+5524351625043367589841676478899986322321647878347887778776888631146246771588899987636887406763268765
+43477441223210020231604866039
+>Consensus
+xxxxgxlxtxHSQtxxiPxCpxgxxxLwxGySllxxxgxxxxxgQdLGxxGSClxxFstmPfxxCxxxxvCxyasrndxSyWLstxxxxpxxmxpxxxxx
+ixxyISRCxVCexxxxxiaxHSQtxxiPxCPxGxxxLWxGYSflmxtgxgxxgxGQxLgspGSCLxxFrtxPFieCxgxgxCxyxsnxxSfWLstxxxxx
+xfxxPxxxxlxxxxixxxISRCxVCxxxx
+>7bf67dbec14c0ea001ff88bc73dd7396
+SVDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEN
+IRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSE
+MFKKPTPSTLKAGELRTHVSRCQVCMRRT
+>gi|261408017|ref|YP_003244258.1| collagen triple helix repeat-containing protein [Paenibacillus sp. Y412MC10]gi|261284480|gb|ACX66451.1| collagen triple helix repeat protein [Paenibacillus sp. Y412MC10]
+---GVTGATGATGE-------TGVTGATGATGAIGVTGATGTTGETgvTGATGATGTTGAATGATGVRGNRSNRINSNRSYR------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------
+>gi|76154243|gb|AAX25734.2| SJCHGC06113 protein [Schistosoma japonicum]
+----------------------------------------------------------------------------------------------------
+--------------SILFARHYQTpfVen--LTCPGGTNKLFTGYSYVMGGGV-DDLVSMDLGTPSSCLSKFSSLPMTQCERDTTCQS--smrH--erSY
+WLATL--VPRSEQP----IPVNQTADQIARCVVCEA--
+>gi|260825417|ref|XP_002607663.1| hypothetical protein BRAFLDRAFT_84648 [Branchiostoma floridae]gi|229293011|gb|EEN63673.1| hypothetical protein BRAFLDRAFT_84648 [Branchiostoma floridae]
+----------------------------------------------------------------------------------------------------
+--------------AILTVIHSQTKDIPECPCGLTEVYNGYSLV-ELTGSNFDPDQDLGSTRSCLPYFSVS-pVTVC-g-GKVCT-EQpT---qktLWLT
+S-gEALPTSQ------hVTDDVLASAVSRCTLC----
+>gi|313230516|emb|CBY18732.1| unnamed protein product [Oikopleura dioica]
+----------------------------------------------------------------------------------------------------
+--------------GFVVTRHSQSTFVPKCPAGSMKLWDGYSLAGIRT-PAGDIAQDMGGSGSCLPNVSLEPAKSCR-KGSCK--SmTKLTSWLGIGDSP
+PTGPNP----VC--DVKAFISRCSVCEV--
+>gi|26348681|dbj|BAC37980.1| unnamed protein product [Mus musculus]
+----------------------------------------------------------------------------------------------------
+-----------VAHGFLITRHSQTTEAPQCPRGTVHIYEGFSLLYVQ-GNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFAsRNDYSYWLSTPEPM
+PMN----MEPLKGQSIQPFISRCAVCEA--
+>gi|318087214|gb|ADV40199.1| putative glycine-rich secreted cement protein [Latrodectus hesperus]
+-----NVIAVHSQSLSIPNCPRGWDSLWIGYSFAMHTAAgAEGGGQSLSSAGSCLEDFRATPFIECNGgKGTCHYFA-SKYSFWLTSIEDDEQFERPAsv
+tlk-ANDLRSRVSRCNVCVKNTNV----------------------------------------------------------------------------
+------------------------------------
+>gi|340380057|ref|XP_003388540.1| PREDICTED: mucin-19-like [Amphimedon queenslandica]
+------LIAKVYQNESglqqedgheqgDLAFNLENQSLY---I--YVNAttalraCSDFIPGPPGSPGE--RGLRGKPGSKGDKGASGLPGLKGEpgprg
+RPGKMGPQGPTGP--GGMKGEKGNEGMKGDQGLKGAA--------GKKGIPGPVGMKG-FPGSMGQKGEK-GNQGARGRSGKPGPIGEKGDTGPpgLNGT
+TGSiG-------------------------------------------------
+>gi|261408017|ref|YP_003244258.1| collagen triple helix repeat-containing protein [Paenibacillus sp. Y412MC10]gi|261284480|gb|ACX66451.1| collagen triple helix repeat protein [Paenibacillus sp. Y412MC10]
+----------------------------------------------------------------------------------------------------
+----------------GATGATGE-------TGVTGATGATGAIGVTGAT-GTTGETgvTGATGATGTTGAATGATGVRGNRSNRINSnRSYR-------
+--------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 * * 2271 * * * * * * * * * 2042 * 2829 1289 * * * * 1
+ 0 * * * * * * 2283 0 0
+
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+ 81 4202 * 4322 74 * * 2955 1033 0
+
+D 3 3437 * 3630 * 5183 4520 5287 6315 6265 2695 4333 4077 5740 4620 3309 2798 4319 4996 6700 4437 3
+ 292 2580 5953 991 1009 * 0 3190 1232 1033
+
+H 4 4135 4587 3436 * 5317 4102 4531 4453 * 6333 5894 4861 5832 4654 2110 3725 2365 6112 * * 4
+ 95 3978 * 2886 210 0 * 3295 1148 1055
+
+G 5 3439 * * * * 520 * * * * 6322 5458 * * * 3431 * 3604 * * 5
+ 0 * * * * * * 3500 0 0
+
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+ 17 6455 * 0 * * * 3634 1000 0
+
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+
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+ 0 * * * * * * 4337 0 0
+
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+ 0 * * * * * * 4337 0 0
+
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+
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+
+Q 13 * * * * * 4069 * * * 5222 * * * 183 * 4935 * * * * 13
+ 0 * * * * * * 4360 0 0
+
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+ 117 5782 4069 1000 1000 * * 4360 1019 0
+
+T 15 4835 * 2511 2769 * * * 4074 5127 4207 7180 * 4257 4246 5927 4560 2026 3565 * * 15
+ 27 5739 * 1000 1000 * 0 4138 1019 1183
+
+D 16 4384 * 3743 3318 5171 5655 5269 7046 4854 4306 4694 4862 * 2803 3658 2638 3624 5614 * 4231 16
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+
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+ 0 * * * * * 0 4138 0 1183
+
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+ 53 4789 * 3000 193 * 0 4138 1026 1183
+
+P 21 7181 * 4587 4852 7506 * * 7605 * 4286 * 3561 400 * * 6301 * * * * 21
+ 0 * * * * 0 * 4138 0 1183
+
+P 22 2292 5613 5083 3967 * 3969 * 4893 7135 2877 7182 4830 3035 3878 3406 4522 4100 6274 * * 22
+ 0 * * * * * * 4357 0 0
+
+G 23 * * 3762 3553 * 762 5642 * * * * 2989 4857 * * 4607 6693 * * 5622 23
+ 31 5536 * 2322 322 * * 4357 1030 0
+
+T 24 7350 * * * 6270 * 4103 * * 4134 3012 3669 4960 4961 5744 3577 1948 3563 2988 5225 24
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+
+K 25 4664 * 4158 5022 * 4960 * 4597 5496 * 4972 3695 4553 3256 3450 4645 1896 3209 * 6217 25
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+H 29 * * 2374 2399 * 3851 6519 3402 5537 * 7651 5037 * 3324 6087 3379 2751 5240 * * 29
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+
+G 30 3712 * * * * 115 * * * * * * * * * * * * * * 30
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+
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+
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+
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+
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+
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+
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+
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+
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+ 0 * * * * * * 4357 0 0
+
+H 43 6082 * * * 6659 3129 1309 3013 * * 6940 * 4420 * * 3564 3199 3681 * 7099 43
+ 38 5249 * 2000 415 * * 4357 1025 0
+
+G 44 4683 * 4868 * * 867 5731 * 6943 * * 2906 3175 * * 4221 4490 6716 * * 44
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+
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+
+D 46 4746 * 559 * * 4552 * 5536 * * * * 3669 * * 3591 4100 * * * 46
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+
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+
+G 48 4692 * * 5937 * 224 * * * * 6962 * * * * 3907 * 6123 * * 48
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+
+T 49 3572 * 5612 * 5528 4547 6234 * 7754 2963 5547 * * 3682 4385 1670 2303 * * 5597 49
+ 0 * * * * * * 4364 0 0
+
+A 50 1459 * * * * * * * * 3485 * * 1554 * * 3436 3473 5395 * * 50
+ 0 * * * * * * 4364 0 0
+
+G 51 6943 * 5814 * * 166 * * * * * * * * 5613 4003 * * * * 51
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+
+S 52 3844 * * 3677 * * * * * * * * * * * 231 * * * * 52
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+
+C 53 * 116 * * * * * * * * * * * * 6310 * 3951 * * * 53
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+
+L 54 6310 * * * * 3951 * 4355 * 453 3796 * * * * * * 3807 * * 54
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+
+R 55 4494 * * 2917 * * 7527 5642 4640 * 4965 * 2088 3410 1963 4593 3469 6939 * * 55
+ 16 * 6464 * * * * 4389 0 0
+
+K 56 6222 * 4211 5112 * 3696 5287 * 2707 5998 5192 4564 * * 1268 6280 4036 4239 * 5611 56
+ 0 * * * * * 0 4394 0 1000
+
+F 57 * * * * 259 4036 * * * 3696 * * * * * * * 5259 * * 57
+ 0 * * * * * 0 4394 0 1000
+
+S 58 3753 * * * * 5773 6280 * * * * 3438 * 5903 2335 997 3532 * * * 58
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+
+T 59 2779 * * * * 3696 * 4931 * 5259 6531 * 3797 5903 * 4962 854 4899 * * 59
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+
+M 60 4338 * 6222 5307 * * 4684 4827 3659 3304 1061 * * * * 4198 3015 * * * 60
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+P 61 * * * * * 3986 * * * * * * 94 * * * * * * * 61
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+
+C 65 * 213 * * * 3666 * * * * * * * * * * * 4099 * * 65
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+N 66 7303 * 2147 3828 * 4365 4872 * 6151 * * 1266 * 5337 3481 4627 5050 * * * 66
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+
+I 67 4084 * 5301 * 4178 2330 * 2323 3452 3458 5525 7131 3406 5734 4748 5990 4692 4451 * * 67
+ 54 5108 6979 0 * 0 * 4252 1044 1114
+
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+
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+
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+
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+
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+
+S 75 5558 * 7025 5982 5203 5561 * * * 3542 4519 4761 * 3222 4729 960 4000 * * 5707 75
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+
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+
+N 77 * * 4309 6937 * 3545 4856 * 4943 6304 * 794 * 5401 3981 4420 3928 * * * 77
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+
+D 78 * * 825 2609 * 4789 * * 3650 * 6231 * * 5749 * 3289 * 5540 * * 78
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+
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+
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+
+Y 81 * * * * 2381 3522 * 6056 * 3443 * * * * * 4319 * * * 827 81
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+
+W 82 * * * * * * * * 3521 6625 * * * * * * * * 148 * 82
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+
+L 83 * * * * * * * * * 138 3452 * * * * * * * * * 83
+ 21 6107 * 1000 1000 * 0 3827 1008 1060
+
+S 84 2689 * * * * 2929 * * * * * * * * * 733 3424 5726 * * 84
+ 0 * * * * * 0 4136 0 1092
+
+T 85 4680 * * * * * * 5054 * * * * 3492 * * 2410 651 5873 * * 85
+ 120 4133 5454 1425 672 1843 471 4136 1132 1092
+
+P 86 2691 * 6672 4090 * 4092 * 4420 * 3513 * 3395 3424 3343 8061 3708 2685 4032 * * 86
+ 90 4624 5653 1068 935 1309 745 4090 1129 1117
+
+E 87 1983 * 4611 1608 6121 3273 * 5550 4195 5024 * 4632 5406 4957 5382 5663 6185 * * * 87
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+
+P 88 3335 * 5204 4036 * 5395 5550 * 6440 6230 4927 5730 900 4218 * 4409 4571 6317 * * 88
+ 55 6727 5173 1585 585 1560 598 3802 1003 1103
+
+M 89 * * 6396 6298 7095 * 6034 2419 6176 2478 2156 * 3674 4940 4702 5806 3417 4356 * 4697 89
+ 69 4988 6062 2466 288 1127 883 3811 1053 1131
+
+P 90 5123 * 6364 5867 * 3448 * * 6465 5902 5774 6269 505 6025 6331 5607 4720 * * * 90
+ 273 7032 2603 1000 1000 * 0 3829 1000 1092
+
+M 91 5007 * 6319 4688 5796 * * * * 4355 1216 * 2561 4412 4478 4042 4015 6986 * 5141 91
+ 1180 * 840 * * 3868 102 4048 0 1442
+
+S 92 5812 * 3411 * 2703 3979 * * * 3952 2806 2940 4585 4760 * 2192 4804 * * * 92
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+
+M 93 * * 5680 3475 * * * * * * 657 5937 4348 5116 4784 4217 * 4547 * 5101 93
+ 0 * * * * 174 3141 3414 0 2110
+
+A 94 2849 * * 4066 * 3443 * 4639 3771 * 1906 4259 5888 4962 4957 3680 3579 4870 * * 94
+ 253 2635 * 1361 711 * 0 3798 1385 1112
+
+P 95 4864 * * * * 3433 * * * 5816 6568 * 431 * * 6848 3402 * * * 95
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+
+I 96 5033 * * * * * * 1877 * 2480 3194 * 5285 5705 * 6443 * 1505 * * 96
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+
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+ 71 5765 5080 3056 185 0 * 3829 1091 1069
+
+G 98 2938 * 4072 2493 * 1306 * 5682 * * * 4123 5823 7618 5023 4260 * 4458 * * 98
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+
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+
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+I 101 * * * * * 3513 * 1072 * 2143 5390 * * * 5582 * 4998 2894 * * 101
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+I 105 * * * * * * * 463 * 5023 3513 * * * * * * 2679 * * 105
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+
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+
+R 107 * * * * * 3513 * * * * * * * * 132 * * * * * 107
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+
+C 108 * 158 3513 * * * * * 5955 * * * * * * * * * * * 108
+ 0 * * * * * * 3892 0 0
+
+A 109 2550 * * * * * * 4401 * * * 6477 5955 2864 5002 2062 3617 1915 * * 109
+ 33 * 5472 * * * * 3892 0 0
+
+V 110 * * * 5939 * 3464 * * * 5574 6932 * * * * * * 211 * * 110
+ 0 * * * * * 0 3870 0 1025
+
+C 111 * 163 * * * * * * * 3464 * * * * * 5939 * * * * 111
+ 0 * * * * * 0 3870 0 1025
+
+E 112 * * * 578 6731 * * 6039 3502 5767 4084 * * 3572 * 5449 7064 5283 * * 112
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+R 228 4431 * 5719 * * 4896 4478 5405 3399 5082 6584 2074 5005 5034 2613 3391 3492 6116 * 4773 228
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+T 229 * * 4368 6308 3921 4754 * * 6011 3611 4478 5168 4198 3847 3065 2838 2013 4849 * * 229
+ 0 * * 0 * * * 2923 0 0
+
+//
+�HHsearch 1.5
+NAME 7cff8b05889041a6d059231e4f4bc281
+FAM
+FILE 7cff8b05889041a6d059231e4f4bc281
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:50:46 2013
+LENG 193 match states, 193 columns in multiple alignment
+FILT 135 out of 327 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCEEEECCCCCEEEEEEEECCCCE
+EEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCCC
+>ss_conf PSIPRED confidence values
+9876566787752017289999858858998799859774389980346999991388899998136528999899988870235740489999846976
+899988604888885179999989988117767999850358731079885527885543664877677887786232232187076877889
+>Consensus
+xxxxxxxxxxxxxlxgxxxqLYcrxgxxLqIxxdGxVxGtxdxxsxxsxleixsvxxgxVxIrgvxsxxYLcMNxxGkLyxsxxxsxeCxFxExxxeNxY
+xtYxSxxyxxxxxxrxwYlalnkxGkxrxGxrtkxxxxsshFLprxvxxxxxrxpxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+>7cff8b05889041a6d059231e4f4bc281
+GSKKRRRRRPEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSELFTPECKFKESVFENYY
+VTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSVSGVLNGGKSMSHNEST
+>gi|28071267|dbj|BAC55965.1| fibroblast growth factor 8/17/18 isoform 2 [Ciona savignyi]
+---------------------------RVQILGK-RVNAKGVRGNKYSKMAILSTSFggR-IMIQGVETGRVLCMNRKGRLvgkvLRRAKHDLKCQFNDL
+MMPNLFDYFTNVAH------PKWYVAFNSHGRPKKGPTTKLGQVETMFLKRPIETFGY-----------------------------------------
+>gi|56692781|ref|YP_164239.1| hypothetical protein ORF144R [Singapore grouper iridovirus]gi|42517493|gb|AAS18159.1| unknown [Singapore grouper iridovirus]
+------------------KILYCKTNFMLEVNGTA-VSGGTDKQSQTAKLTLKSVRAGQIVIKGSI-GGYVCMDRNGAVSAKTTYvQSDCVFNETLLPNN
+YNSYSAAEHLNPETRANMHLAIDKAGKVRSGKRTAKTDNSAQWLVL------------------------------------------------
+>gi|221110175|ref|XP_002166704.1| PREDICTED: similar to fibroblast growth factor 1B, partial [Hydra magnipapillata]
+-----------------LIYARRRNGMNLGII-NKKVAGMKKDNDINGLFEIQSYATSIVMLRHFATENYIAINEKGEIIVTPSKNDECLFYHYMEENGY
+VTFASVKYYI-NEHYDLFLNLKANGKVRDVRRTAPGQTSSQFILIP-----------------------------------------------
+>gi|170589121|ref|XP_001899322.1| Fibroblast growth factor family protein [Brugia malayi]gi|158593535|gb|EDP32130.1| Fibroblast growth factor family protein [Brugia malayi]
+-----------------VWQLYSRcSSAFVQIFLKhANARGQQFNH-CLTDLLMHADNEGRIRIENALTGKFICFNKRQRLAIrSDGMDDKCLFREQLTS
+SGYTMFQSA-WK-----QNLFLGFNRKGKFQDPSQINTKRRCFLFIKLLREVKSTR----------------------------------------
+>gi|20069930|ref|NP_613134.1| fibroblast growth factor FGF [Mamestra configurata NPV-A]gi|20043324|gb|AAM09159.1| fibroblast growth factor FGF [Mamestra configurata NPV-A]gi|33331762|gb|AAQ11070.1| FGF [Mamestra configurata NPV-A]
+-------------------QIFI-NHHLLRMNLDGIVNGTQTGESSETVWHRISQSDG-ILLRSSLYCNYACINECGYGYSALIPNNECLWTEQYDEHNY
+R-FINKKFG----NRTAYLSINLEGKLKRTVLL------------------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 421 * * * * * 2883 * * * 3089 * * * * 1
+ 0 * * * * * * 1544 0 0
+
+S 2 * * * * * 997 * * * 3056 * * * * 2883 2040 * * * * 2
+ 0 * * * * * * 1544 0 0
+
+K 3 * * * * * * * * 2944 * * * * * 201 * * * * * 3
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+K 145 * * * 6128 * * 6215 3626 3372 2768 4071 5857 * 6070 1065 5864 * 4468 * 5990 145
+ 12 6910 * 4248 78 * 0 5889 1000 1042
+
+P 146 4953 4603 4372 5704 5321 * 5710 5900 4684 3103 * 4583 1550 6319 3686 4830 4770 3586 * 6117 146
+ 39 5214 * 3537 130 * 0 5848 1027 1042
+
+L 147 4190 * * 5806 4954 5833 5660 2068 * 3240 * 3128 4904 * 4572 6036 5734 1788 * * 147
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+
+K 148 4863 * 2569 1727 * 4151 5783 * 3918 5675 * 5812 5451 * 3860 3477 3371 4681 * * 148
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+
+V 149 4960 * * 5003 5139 4801 4387 3933 * 4509 5202 * 3683 4926 * 2544 3951 1551 * * 149
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+
+A 150 2944 3612 4536 * 4494 * 4691 * 4149 * 4997 4445 1518 5432 3925 3928 5336 * * * 150
+ 115 3704 * 1645 556 2002 414 4742 1046 1149
+
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+
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+
+S 156 * * * 4819 * * * * 3985 3973 * 4261 3749 4267 3419 955 * 4322 * * 156
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+
+L 157 * * * * * 3419 4633 3647 3973 1376 3899 * 3119 4364 * 3749 * 4946 * * 157
+ 0 * * * * * * 3807 0 0
+
+H 158 4276 3997 * 3006 * * 914 * * * * * 2984 4589 * * * * * 3996 158
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+
+D 159 * * 1148 1912 * * 3316 * * * * * 3604 * 3843 5033 * * * * 159
+ 117 3687 * 0 * * * 3770 1120 0
+
+L 160 * * * * 1839 * * 2489 * 1890 * * * * * * 3230 2591 * * 160
+ 39 * 5239 * * * * 3625 0 0
+
+T 161 2849 * 5329 4291 2186 2197 * 4160 * 3927 * * 3882 * * * 2663 * * * 161
+ 0 * * * * 0 * 3244 0 1069
+
+E 162 4269 * * 784 * 2778 * * * * * * * * * 2566 * 4248 * * 162
+ 220 2825 * 1235 798 * * 2793 1283 0
+
+F 163 3764 * * 3755 4771 * 3652 * * * * * 3222 1794 3081 2893 3511 * * * 163
+ 0 * * * * * 0 2805 0 1043
+
+S 164 * * 2893 * * * * * 4831 * * * 4683 * * 550 * 3207 * * 164
+ 0 * * * * 0 * 2805 0 1043
+
+R 165 * * * * * 4926 * * * 2459 * * 1510 * 1334 * * 4737 * * 165
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+S 166 * * * * * * * * 2024 2928 * * 3961 * 1927 1758 * * * * 166
+ 214 5425 3127 0 * * * 2793 1062 0
+
+G 167 2700 * * * * 4376 * * * * * 4634 4049 * * 769 * 3178 * * 167
+ 134 3497 * 0 * * 0 2370 1028 1165
+
+S 168 * * * * * 3418 * * * * 2570 * 2868 * 4571 839 * * * * 168
+ 0 * * * * * 0 2298 0 1235
+
+G 169 * * * 2731 * 1599 * * * * * * * * 4159 2539 * 1779 * * 169
+ 0 * * * * * 0 2257 0 1235
+
+T 170 * * * * * 2479 * * * * * * 4238 * * 2782 1084 2731 * * 170
+ 0 * * * * * 0 2257 0 1235
+
+P 171 * * 2539 * * * * * * * * * 562 2731 * * * * * * 171
+ 0 * * 0 * 613 1530 2257 1028 1235
+
+T 172 * * * * * * 2882 * * * * * * * * 911 1588 * * * 172
+ 986 * 1014 * * * 0 2218 0 1054
+
+K 173 * * * * * * * * 816 * * * * 1942 2543 * * * * * 173
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+
+S 174 * * * * * 1942 * * 2543 * * * * * * 816 * * * * 174
+ 0 * * * * * 0 1735 0 1555
+
+R 175 * * 2543 * * * * * * * * * * * 1224 * 1321 * * * 175
+ 0 * * 3170 170 2659 249 1735 1054 1555
+
+S 176 * * * * * * * * * * * * 2315 * * 542 3155 * * * 176
+ 0 * * * * 1471 646 1808 0 1463
+
+V 177 1683 * * * * 3012 * * * * * * * * * 1458 * 2318 * * 177
+ 545 1669 * 3131 175 * 0 1883 1125 1283
+
+S 178 * * * 2804 * * * * * * * * * * * 543 2551 * * * 178
+ 0 * * * * * 0 1763 0 1352
+
+G 179 1967 * * 2551 * 2625 * * * * * * 2804 * * * 1898 * * * 179
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+
+V 180 2551 * * 1898 * * * 1967 * * * * * * * * * 1711 * * 180
+ 543 1672 * 1021 979 0 * 1763 1174 1352
+
+L 181 * * * * 2646 * * * * 1975 1105 * * * * * * 3047 * * 181
+ 0 * * * * * * 1890 0 0
+
+N 182 * * * * * * * * * * * 298 * * * 3927 3047 * * * 182
+ 0 * * * * * * 1890 0 0
+
+G 183 * * * * * 215 * * * * * * * * * 3785 3927 * * * 183
+ 186 3047 * 2000 415 * * 1890 1028 0
+
+G 184 * * * * * 478 * * * * * * * * 3756 2265 * * * * 184
+ 146 3375 * 0 * * * 1822 1069 0
+
+K 185 * * * 3658 * * * * 119 * * * * * * * * * * * 185
+ 0 * * * * * * 1822 0 0
+
+S 186 3542 * * 3391 * * * * * * * * 1729 * 3370 2932 * 1789 * * 186
+ 177 3118 * 0 * * * 1563 1045 0
+
+M 187 2861 * * * * * * * * 3170 2769 * * * * * * 726 * * 187
+ 0 * * 2700 241 * * 1518 1065 0
+
+S 188 * * * * * 2861 * * * * * 715 * * * 2769 3233 * * * 188
+ 0 * * * * * * 1518 0 0
+
+H 189 * * * * * * 2769 * 1599 * * * * 1232 3358 * * * * * 189
+ 129 * 3543 * * * * 1518 0 0
+
+N 190 * * 1039 * * * * * * * * 2682 2942 * * 2135 * * * * 190
+ 0 * * * * 0 * 1529 0 1016
+
+E 191 * * 3365 2639 * * * * 1978 * * * * * * 1034 * * * * 191
+ 0 * * * * * * 1514 0 0
+
+S 192 * * * * * * * * * * * * * * * 1957 430 * * * 192
+ 604 1547 * 2199 354 * * 1514 1146 0
+
+T 193 * * * * * * * * * * * * * * * 1073 930 * * * 193
+ 0 * * 0 * * * 1548 0 0
+
+//
+�HHsearch 1.5
+NAME 7d7b394238d3b3e35f1bbacceedade0b
+FAM
+FILE 7d7b394238d3b3e35f1bbacceedade0b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:07:45 2013
+LENG 212 match states, 212 columns in multiple alignment
+FILT 177 out of 1181 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEECCCCCCCCCCEECCCCCCCCCEEEECCCCCEEEECCCEEEEEEEECCCCCEEEEEEEEECCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
+CCEEEEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEEEECCEEEEEECCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCE
+EEEEEEEEEECC
+>ss_conf PSIPRED confidence values
+9836961799974567884797788305777086677990899899999946899737899998230312599999994699964999996035677999
+7629999983269778899976998996459758999877819999999599899999999999968999999749999997278765568887999985
+999999999869
+>Consensus
+xxxfxDeFxxldxxxWxxxxxwxxxxxxxxxxxxxnvxvxxxGxLxlxxxxxxgxxxxsgxixsxxxxxyGxxEarxkxxxxxgxxxafwlxxxxxxxxx
+xxEIDiExxgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHxYxxxWxxxxixfyvDgxxvxxxxxxxpxxpxxlxlnxxxxxxxxxwxgxxxxxxxx
+xxxVDxVrvyxx
+>7d7b394238d3b3e35f1bbacceedade0b
+GSVFWEPLSYFNPSTWEKADGYSNGGVFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ
+WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMMNLWNGTGVDDWLGSYNGANPL
+YAEYDWVKYTSN
+>gi|109897132|ref|YP_660387.1| glycoside hydrolase family protein [Pseudoalteromonas atlantica T6c]gi|109699413|gb|ABG39333.1| glycoside hydrolase, family 16 [Pseudoalteromonas atlantica T6c]
+--QFTDEFDGqiLDTQRWHPTnPGWKGREPTF--FHKDNTRLEG-GELVMSINQHgdtelpEGYTHSSGFIKTKERVLYGYFESEAKLMDA-PWVSGFWL
+TMG--TKEWWTEIDIqENCPCVDGqrhDINSNLHVfrSpkEHGNvkkhfsDSKKYYHPDEIQKDYHVWGLEWNEDVIRFFIDGFMFREVENTHWHQPLTI
+NVNNES----NKWFNALPdDnRTDEEYRVKYVRVWQ-
+>gi|90021040|ref|YP_526867.1| thiol oxidoreductase-like protein [Saccharophagus degradans 2-40]gi|89950640|gb|ABD80655.1| putative retaining b-glycosidase [Saccharophagus degradans 2-40]
+--IFEENFNTLNSDRWNVIegdgcqygpnlCGWGNQELQYYQD--SNVTIEDvpgePGnkAVVFEARNETvnGSAFTSGKIDSEDgiAIKYGMIEFRLRV
+PNmGVGYWPAVWMLGTSTESWPSkGEIDMMEMGHRAQgmadagHPGTNlnNYTAanaifyaeAAcvPENPTcaAMTAWQtdnayvsqtSMGERFVIYRTY
+WTDTQLRFTVIdnGVEYDMyddpitIGEEatELQQPFYLLANLAVGGNFTDA-STPAevtAQLPGKMYLDYIRVYQL
+>gi|170727005|ref|YP_001761031.1| hydrolase [Shewanella woodyi ATCC 51908]gi|169812352|gb|ACA86936.1| hydrolase (secreted protein) [Shewanella woodyi ATCC 51908]
+--IMFDDFNYINlaqaeENGWMARTETGHPGIKGATWWSEGVSFhpdpLNYSnqVMRISSKTDGTPaNTRQTQVCHKRKYHEGTYAARVYFndkpqygPD
+GDGIVETFYAISPlASPLDPAySEMDFEYLANGgwgeGDhALFaTSWETfQLKpwtPVNA--YDATRNSLQGWNTLVLQVSDNKLRYFINGELFAEHgSE
+VYPEVAMSINFNLWFIP---------------------------
+>gi|152967800|ref|YP_001363584.1| hypothetical protein Krad_3857 [Kineococcus radiotolerans SRS30216]gi|151362317|gb|ABS05320.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216]
+--------------------------------------------------------------------REGQVDVRVTASLDRGCMLAVWLVGTEHEsPG
+DSGEVCVcEIDADAVGetstRVRTGVKAHHDPrlrTEVTEVVVPVGA-GQAHWWSARWNASGVVVACDERVVFTSA-QHVRGPQQLMVDLFEVV------
+APgPAGEYPKTAVVHAVRGS--
+>gi|154296949|ref|XP_001548903.1| hypothetical protein BC1G_12563 [Botryotinia fuckeliana B05.10]gi|150843090|gb|EDN18283.1| hypothetical protein BC1G_12563 [Botryotinia fuckeliana B05.10]
+------------------------------------TKVIG-NQVYMGVDNTTvlsdkVNGkRNSIWVNLFMSF---LMV--FLlVISRtCLVVivePGL
+vsanrfasWTIRN---GdGPYg-EMDIlEGSNDIT-----------------------------------------------------------------
+----------------------------------
+>gi|255692839|ref|ZP_05416514.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]gi|260621401|gb|EEX44272.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
+------------------------------------AQVTNEGELNICV--GVegt--NYGTAAIHcckslaqmwaQNVtRIYPGmRIEVKVRLGGnRTG
+FVPMIEVKNPSTATtskEAKQSICIlKNVsGTAITqSVRGETIS-D----VKSVvtAIP--KVEDYNIYWMELVDENtIKLGINGSTTLevsKdMLNSWP
+ftkastgtsvgAKGLYLIMRwdLFGesntiSPDlPAGWDTELKsidptkyATEGPRMIIDWIRFYV-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 0 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+S 2 * * * * * 1676 * * * * * * 2498 * * 971 * * * * 2
+ 281 2498 * 0 * * * 3035 1011 0
+
+V 3 3115 6437 4064 4988 * * 6795 3443 5828 3419 6730 4972 6882 4749 6688 4594 3216 1797 * 4787 3
+ 0 * * * * * * 7936 0 0
+
+F 4 * * * * 960 * * 6327 6690 3518 4397 * * * * * * 4822 1862 5764 4
+ 0 * * * * * * 8056 0 0
+
+W 5 4077 6527 4778 2812 3822 5299 4082 7007 4993 6988 5631 4560 * 3745 4065 2045 6839 4047 4918 7087 5
+ 0 * * * * * * 8149 0 0
+
+E 6 6538 * 351 2649 6799 * * * * * * * 6422 6748 * 7096 6887 * * * 6
+ 0 * * * * * * 8136 0 0
+
+P 7 * * 1842 1155 * 5862 6737 * * * * 3274 5833 5011 * 4580 4274 * * * 7
+ 0 * * * * * * 8136 0 0
+
+L 8 * 6566 * * 72 * * * * 5982 * * * * * * * 6340 6670 * 8
+ 0 * * * * * * 8162 0 0
+
+S 9 4828 * 1547 3941 * 5864 5686 * 6094 * * 1542 * * 5668 3806 3802 * * * 9
+ 775 1266 * 1216 812 * * 8174 4482 0
+
+Y 10 3492 * 3942 4844 * 2431 6756 * 4132 7047 * 4457 7108 3907 5306 2336 2945 5879 * 4006 10
+ 376 2177 6919 1886 455 * * 8174 3053 0
+
+F 11 5875 * * 6813 4089 5889 6659 2713 5854 1318 7101 7063 2515 * * 6746 5243 3721 6730 7147 11
+ 79 4238 * 1325 735 * 0 8157 1449 1000
+
+N 12 5843 * 952 4492 6984 5207 * 5427 6701 5236 * 1977 * 5338 6949 5136 * 6436 * * 12
+ 148 3608 6000 1919 443 0 * 8186 1865 1000
+
+P 13 4171 * 3794 3649 * 4594 * 7112 5803 4076 5794 4875 3243 4747 4703 3150 1789 7159 6031 6760 13
+ 10 7159 * 2807 222 * 0 8191 1000 1114
+
+S 14 2680 * 3352 5039 * 4885 5414 * 3730 6645 6928 3819 5436 3929 6649 2018 2854 6655 * * 14
+ 10 7158 * 1000 1000 * 0 8279 1000 1114
+
+T 15 5884 6989 4882 5255 5376 4994 5865 4958 1537 4906 6905 2776 6644 6116 3115 6875 6150 3777 * 4553 15
+ 0 * * * * * 0 8415 0 1114
+
+W 16 * * * * 5275 * * * * * * * * * * * * * 38 * 16
+ 12 * 6944 * * * 0 8415 0 1114
+
+E 17 4597 * 4593 4252 5413 4599 5247 3883 3865 4213 7054 2613 * 3559 3896 4013 3043 4663 * 4733 17
+ 110 4189 5759 766 1280 * 0 8400 1532 1214
+
+K 18 3825 5745 5009 6786 4165 4888 4419 3495 3743 3920 6982 * 4042 5457 4515 5654 4584 2611 * 2790 18
+ 97 4547 5498 1518 620 2105 382 8360 1494 1430
+
+A 19 4024 6047 4832 3035 7025 3582 4950 4377 5037 3804 5002 4389 5125 4586 3374 3803 4155 4361 5281 4485 19
+ 485 2008 4754 1602 576 1934 438 8361 3380 1553
+
+D 20 5385 6860 2385 4379 6725 3882 4927 6097 4580 5016 6545 3140 3324 5125 4617 3286 3776 5735 * 4547 20
+ 699 1973 2952 2123 376 2907 206 8333 3360 1767
+
+G 21 4916 * 4131 4751 4981 1197 5383 5370 4595 6928 * 3618 3990 5210 5348 3744 5713 * * 5854 21
+ 156 3800 5017 1233 799 862 1152 8308 1643 2867
+
+Y 22 6681 6881 4339 7120 3502 4803 5226 7313 7143 3869 5829 7190 7332 6970 6896 5409 6068 6876 890 4089 22
+ 393 2570 3838 998 1002 1938 436 8521 2673 2116
+
+S 23 4535 7037 4051 6792 5921 1927 4427 5244 4270 5877 * 4247 4679 5878 4101 3170 4796 3847 5959 4083 23
+ 99 4643 5238 1515 621 726 1338 8506 1352 2508
+
+N 24 3476 * 5062 6734 * 2461 5260 * 4693 5578 5675 1612 3731 5849 * 4296 3611 * * 4996 24
+ 36 6112 6660 1322 737 1685 538 8536 1075 1820
+
+G 25 5345 * 4281 6767 * 1642 6035 6764 5015 6623 * 2884 3803 3901 3115 4013 5045 5270 6044 7382 25
+ 40 5541 7382 1000 1000 1907 447 8536 1147 1648
+
+G 26 4699 7545 3909 1814 5301 3408 6051 * 5066 6009 6129 4732 4898 3530 4933 3009 4697 4987 7160 5705 26
+ 124 6772 3770 0 * 2943 201 8558 1003 1522
+
+V 27 3890 5811 4882 4959 4683 4665 5508 4328 5248 2901 5112 4891 2369 4161 3791 4587 5295 4113 5578 6904 27
+ 154 6680 3450 1290 759 1838 474 8462 1132 2211
+
+F 28 * 6799 * 3384 3347 4178 7037 5355 3888 5359 5368 5382 5074 1787 4143 4647 5800 4181 * 3635 28
+ 96 6964 4146 2322 322 1960 429 8383 1000 2867
+
+N 29 3765 4059 3845 4849 3973 4660 4328 5868 5428 3693 5731 3390 5865 4660 5176 3739 3580 5853 6007 3301 29
+ 143 7203 3511 1000 1000 1252 785 8352 1000 2861
+
+C 30 3518 3428 * 6926 4065 4032 5299 4450 6714 5472 5353 4106 5382 * 6580 5044 3770 5502 5200 1655 30
+ 271 5749 2714 2995 193 1597 579 8429 1111 2845
+
+T 31 5244 * 4683 6640 5898 5188 5104 4283 5188 2920 6878 3906 5126 4879 4749 3536 2178 2986 * 4964 31
+ 126 4840 4361 1842 472 2072 392 8344 1253 3574
+
+W 32 4355 * 2651 * 2264 5986 6767 6836 5900 4639 6721 3628 5054 * 4414 4987 4946 5077 2510 4144 32
+ 148 3998 4841 2303 327 371 2141 8564 1548 3410
+
+R 33 4119 6046 2545 4736 * 3415 6996 6053 4850 4571 6990 3686 6419 4915 3732 2315 3946 4799 * 5822 33
+ 39 6038 6444 0 * 442 1923 8702 1085 1906
+
+A 34 2716 * 5223 3823 * 3523 4621 6144 3508 7488 * 4704 1865 4600 4114 4483 5124 * * 5063 34
+ 51 5316 6699 2810 222 0 * 8764 1238 1349
+
+N 35 4021 * 2236 2414 * 3637 * * 3642 7362 7090 3668 6539 4574 4357 2957 5251 7517 7208 5854 35
+ 52 4818 * 1531 613 * 0 8697 1431 1021
+
+N 36 3536 5248 4693 7371 * 6296 5092 * 6918 6507 7110 744 5882 4257 6241 4899 5774 5742 * 5372 36
+ 0 * * * * * 0 8697 0 1021
+
+V 37 2948 6243 * 7608 5950 * 6259 3251 * 4991 6319 7062 5780 6127 * 4172 3760 1078 7054 5425 37
+ 26 5819 * 1312 744 0 * 8686 1177 1021
+
+N 38 5453 6901 4444 3832 3787 5790 5785 5685 3697 5780 * 4620 7427 4464 3460 2616 2635 4595 4824 4446 38
+ 17 7427 7388 1585 585 * * 8727 1000 0
+
+F 39 4538 * 7609 5106 3451 7431 6954 2526 6279 3721 6169 6785 7074 5385 * 6955 4886 1226 * 4992 39
+ 49 6202 5650 725 1341 0 * 8710 1100 1000
+
+T 40 4563 6966 3009 2645 * 4110 6283 5862 3501 5586 * 4514 6780 4930 4788 2362 3441 4220 7273 * 40
+ 28 5719 * 0 * 704 1373 8688 1194 1208
+
+N 41 4440 * 1703 4096 * 2260 7387 * 4106 7080 * 2675 4669 4782 7283 4681 5960 7118 * 7138 41
+ 1659 4697 633 1658 550 * 0 8706 1460 1025
+
+D 42 4836 * 1566 3156 * 3943 4799 * 6345 5576 * 3231 4338 3327 * 3225 5781 * * * 42
+ 86 4104 * 1643 557 18 6361 7819 1218 6879
+
+G 43 * * 5086 6554 * 227 * * 7279 * * 4517 * * 6995 6446 5532 6826 * 7525 43
+ 143 3774 5568 748 1305 * 0 8695 1940 1025
+
+K 44 3348 6408 4859 4579 5541 5759 4797 4637 3576 4386 4703 2465 * 4754 4051 4700 3915 3711 * 3882 44
+ 77 4260 * 1311 744 0 * 8702 1745 1410
+
+L 45 3845 * * * * * * 5216 * 437 4562 7438 * * * 5075 * 3782 * 6122 45
+ 20 7325 6995 1585 585 * * 8698 1008 0
+
+K 46 5258 7434 5178 4794 * 7550 3651 4214 3160 5718 7435 4710 * 4396 2742 4062 3841 2115 6443 5524 46
+ 0 * * * * 0 * 8675 0 1032
+
+L 47 * 6082 * * 5179 * * 1517 * 1012 3762 * * * * 7265 * 4955 * * 47
+ 0 * * * * * * 8698 0 0
+
+G 48 5078 * 7125 3409 6984 5625 5194 4298 2767 5291 7674 4608 * 4089 3245 3045 2454 4190 6126 7088 48
+ 30 6139 7309 0 * * * 8698 1107 0
+
+L 49 1722 7519 * * 6473 4494 * 2987 * 2708 4839 5680 4604 7155 * 6326 3298 3108 7449 5779 49
+ 26 5829 * 1452 656 * 0 8692 1178 1006
+
+T 50 5007 6050 3439 4529 5169 5197 5439 4227 3258 7162 * 4186 5677 4095 2407 3978 3250 4500 5525 5699 50
+ 93 4003 * 1704 529 * 0 8692 1836 1006
+
+S 51 3873 * 5195 4058 5583 5041 5812 7147 2331 5796 7144 3697 4174 4148 2838 3740 5089 4466 6423 4196 51
+ 165 3399 6245 1739 514 0 * 8693 2291 1109
+
+S 52 4200 * 2825 2603 6148 4336 5693 6983 3948 5632 6520 3263 3504 4068 5014 3639 3867 7103 * 6140 52
+ 366 2411 4802 2883 210 * 0 8708 3335 1117
+
+A 53 3476 7177 3641 4715 * 3109 6379 6958 5688 6340 6943 3404 3282 4488 5565 2207 3009 7532 * * 53
+ 1097 1109 3856 2789 226 2158 366 8643 5699 1703
+
+Y 54 3892 * 3701 4734 * 1072 4900 * 5456 * * 3706 7586 4854 * 3653 4637 5516 * 5154 54
+ 679 1569 4706 2622 256 2083 388 8566 4630 2449
+
+N 55 4766 * 5175 4172 4500 2626 4549 5558 2944 5785 * 4891 4355 5821 3210 4802 3766 4400 6759 3513 55
+ 39 6097 6386 1369 706 1487 637 8588 1291 2543
+
+K 56 4437 * 3535 4780 6829 4584 5247 5673 3442 5043 7429 3190 2687 4233 4017 4176 3453 4885 5114 5839 56
+ 39 6565 5985 503 1764 791 1244 8638 1107 2139
+
+F 57 7506 * 7146 * 3076 4786 4845 4053 6150 4522 5612 5717 5380 * 5889 * 5711 3435 2645 1607 57
+ 17 7440 7459 2585 263 970 1030 8640 1007 1641
+
+D 58 3791 7153 3661 4907 * 6132 5826 4654 5300 4396 5669 5568 * 5521 4064 2871 1799 4172 7290 4167 58
+ 53 5246 6655 597 1562 1309 746 8680 1269 1351
+
+C 59 3469 3637 * * 6164 2425 6205 6861 6802 * * 5523 * 7260 * 1259 2996 5235 * * 59
+ 22 6062 * 618 1522 0 * 8705 1140 1321
+
+A 60 1678 6350 5472 * * 1091 * 7766 5406 * * * 5393 * * 3482 5387 5789 * * 60
+ 0 * * * * * * 8715 0 0
+
+E 61 3260 5731 7024 2629 5095 3521 6290 4961 4863 4651 4463 5570 * 6618 2319 4016 5069 5000 5058 4566 61
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+L 191 1994 * 4432 5281 4390 3672 5562 4355 7232 4258 6329 4619 2962 4356 5854 4490 3730 4725 6521 7485 191
+ 33 7319 5947 1585 585 1339 726 8385 1000 2506
+
+G 192 4339 7019 4962 5058 * 716 * 5268 4247 5591 * 5155 5570 6824 5174 4458 4901 6971 * * 192
+ 59 4866 7516 1700 531 1438 665 8461 1327 2064
+
+S 193 3546 7093 4074 4108 6884 2475 7594 5328 5192 4247 6058 3428 3016 4116 5342 4368 3835 5699 6164 5286 193
+ 206 3501 4483 1003 997 3178 169 8507 1985 1722
+
+Y 194 4844 6259 5365 4568 3838 5298 6648 3300 6869 3763 4432 5486 1663 6591 7026 5564 4961 3827 5739 4276 194
+ 113 4437 5109 1953 431 2458 290 8449 1589 2149
+
+N 195 3120 6169 2244 4423 * 4472 4621 6035 6380 5870 6817 2726 3722 5564 7280 3627 3178 5134 * * 195
+ 678 1563 4773 1594 581 335 2269 8466 4246 2269
+
+G 196 2979 * 2608 3859 5362 3312 7110 6561 5522 6205 5659 4251 3271 4589 5724 2917 4392 5484 7382 5855 196
+ 179 3372 5618 2002 414 128 3560 8529 2072 1736
+
+A 197 3213 6812 3679 3825 6168 3733 * 6183 4157 6162 6936 2917 3474 4906 3839 3414 3390 6642 * 5127 197
+ 123 3831 6488 1785 494 752 1299 8527 1805 1487
+
+N 198 2920 * 4037 3833 4789 2882 * 5016 4969 3440 * 4426 * 3493 5196 4063 2719 6117 * 5555 198
+ 555 1647 * 466 1857 1525 616 8521 4315 1273
+
+P 199 4042 * 3696 3447 * 3951 7504 5457 4224 6497 * 5115 1450 4863 4836 3756 4292 6266 * 6550 199
+ 52 5153 7098 704 1373 1314 743 8553 1282 1147
+
+L 200 2162 * 5163 5039 4347 3721 6185 6149 4616 4886 6134 3802 4870 5231 4582 3750 4372 3160 6385 4162 200
+ 0 * * * * 1355 716 8548 0 1143
+
+Y 201 3715 * 3749 2988 5458 * 7348 5415 3801 * 6247 7350 6266 4505 4195 3065 2398 4596 6022 3288 201
+ 0 * * * * * 0 8557 0 1051
+
+A 202 3738 * * 5389 2920 6023 6099 5420 7117 2757 1465 7112 * 7032 * 5633 4837 3904 * 4021 202
+ 0 * * * * 0 * 8557 0 1051
+
+E 203 * * 3839 2463 5429 6985 5824 5322 3895 3256 7301 5369 7118 3480 4134 4840 4156 3611 5616 2994 203
+ 0 * * * * * * 8578 0 0
+
+Y 204 6155 * * * 4502 * * 1695 * 5044 * * * * * 6617 6793 917 * 4215 204
+ 0 * * * * * * 8578 0 0
+
+D 205 5501 * 529 4177 * 5211 5150 * 3964 * * 5347 * 5667 4475 7311 6061 * * * 205
+ 0 * * * * * * 8570 0 0
+
+W 206 7049 6597 5149 7121 5448 * 5682 * 6631 * * 5486 * 6967 5035 3988 7037 * 1467 1318 206
+ 0 * * * * * * 8567 0 0
+
+V 207 6845 5803 * * 3315 * * 1976 * 3862 * * * * * * 6593 911 * 6978 207
+ 0 * * * * * * 8553 0 0
+
+K 208 4343 * * 4166 * 6040 6232 6564 2790 5340 * 5598 * 5751 848 4131 5519 7380 * 7157 208
+ 0 * * * * * * 8525 0 0
+
+Y 209 3628 4916 * 6888 3465 5124 4767 3242 * 4576 6060 * * 6128 * * 4701 1204 6349 4058 209
+ 0 * * * * * * 8482 0 0
+
+T 210 6815 * 6869 5415 4080 * * 6332 * 6483 * * * * 5832 4882 2985 5029 2635 980 210
+ 0 * * * * * * 8262 0 0
+
+S 211 3626 * 5620 4172 * * 6495 5433 2947 * * 5557 3001 1851 3264 3287 4335 * * * 211
+ 0 * * * * * * 8033 0 0
+
+N 212 * * * * 3433 * * * * 1243 3596 4240 2097 5143 5033 5177 * * * 5110 212
+ 0 * * 0 * * * 6466 0 0
+
+//
+�HHsearch 1.5
+NAME 7ec67cbbd85f59718803563580f1731b
+FAM
+FILE 7ec67cbbd85f59718803563580f1731b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:07:18 2013
+LENG 190 match states, 190 columns in multiple alignment
+FILT 120 out of 1646 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
+CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9413099999999974787667618999999999899999999668876546744630799998999999985698244556677662257689999857
+755768899999999997650379978999987105663499999999731222102233114685299996788979999999999749
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxixlxGxxxxGKStlixxlxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDxxgxxxxxxxxxxxxxxxdxxixvxdx
+xxxxxxxxxxxxxxxxxxxxxxxxxxxiivxnKxDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSaxxxxxixxlxxxlxxxx
+>7ec67cbbd85f59718803563580f1731b
+MAGWDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA
+ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI
+>gi|328699670|ref|XP_001952428.2| PREDICTED: mitochondrial Rho GTPase-like [Acyrthosiphon pisum]
+---------------------------VIGSKGSGKSTICKRHVKTAK------IDNCFEdaeDI----TSVNRVQVYGQDKYLVLkeiktisenhLTKK
+DIKCDVVCLVFDSSQSCSFEYSAHVYLKYYQS---RNIPVLIVANDKGRPLmkqdyILQPDQFCKQNRLS-------------SPYIFINSNEG---KKL
+YSNLA---
+>gi|290971748|ref|XP_002668642.1| rab family small GTPase [Naegleria gruberi]gi|284082126|gb|EFC35898.1| rab family small GTPase [Naegleria gruberi]
+------------------LNtnKANFKLCITGPGGSGIHSFIHRYLNDVFYdQYDYSIDDIfYKTILFNErkVELEIWETGFRStDYYLFLESKLKGARG
+YIVLLPIHADVDkYGVFERIIKSIVYMHDDESVPLLIGITQIDKLETNSslnldqvKQKVTDIMNVY---------SCLDFEIVETSSKSNINIHTVIE-
+-----
+>gi|6690690|gb|AAF24258.1| UreG [Rhodobacter sphaeroides]
+---------------------DPCAWGSAARWAPARRPSTEKLCAALAHRCSMAVITNDIytredaealmraqvlpaerirgvetgaapytairedasin
+laavadlRRTFPDLDLILIESGGDNLAATFSPEL---ADLTIYVIDTAAGQ-------------DIPRKRGPGLarsdLLVVNKIDLAPhvGVDLARLEA
+DTQAA----------RGQRPYVMARMRAGVGVEAIVAFLEREG
+>gi|260810141|ref|XP_002599862.1| hypothetical protein BRAFLDRAFT_127644 [Branchiostoma floridae]gi|229285145|gb|EEN55874.1| hypothetical protein BRAFLDRAFT_127644 [Branchiostoma floridae]
+-------------------EKTNISIVVIGHVNSGKSNTTGHLiykcggidkrniekyereaaearfneiqqELSAcIKKVGYDPGTVAFVPVSAQHGDN
+MVEPSGNMPWYKGWSiernegngSGTTLlealdsilppqrpTDKPLRLPLADVynfrpggmgtmpvGRVetgILKPGmevtfapagltaevepvdikhES
+VPEALPGDTVGInfKNADVSVKELwrgcvagdSKNDppkeAVSFD--AEELSACiKKVGYD----PGTVAFVPVSAQHGDNMVE---------
+>gi|296089292|emb|CBI39064.3| unnamed protein product [Vitis vinifera]
+---------IAKTLRAMPvVDLETPTLCLVGAPNVGKSSLVRVLSTGKPEVcnyPFTTRGILMGHIAFNYRHFQVTDTPGLLNRHDDERNNLekltlavl
+sHLPTAILYVHDLSGECGTSPSDQFFIYKEIRERFSDHLWIDVVSKCDLLQespiifntEDVSADNPELARYQ---------KMGPEGAIHVSVKNEAAL
+NQLKGRVHELL
+>gi|14595136|dbj|BAB61872.1| Picchu-236-X [synthetic construct]
+------------------LDMAGNfdseersswywgrlsrqeavallqgqrhGVFLVRDSSTSPGDYVLSVSENSRVsHYIINSSGPRpPVPPSPAqppp
+gvspSRLRI----GDQEFDSLPALL-----EFYKIHYLDTTTLIEPVSR---------SRQGSGVILRQEEAEYVRAL----------------------
+----------------------------
+>gi|238852571|ref|ZP_04642981.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri 202-4]gi|238834717|gb|EEQ26944.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri 202-4]
+-----------------------------------------------------------------------------PRTNEIGRPAVANVSRVLLVISA
+VEPD---FSLELLDRYLTFFAWKNVGVVIYLSKADITpTEKlkAIKCKLDYY------------QKIGYSvFEDAEE----LERQLPTMIQKDQ
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * 1046 955 * * * * * * * * * 1
+ 0 * * * * * * 1747 0 0
+
+A 2 0 * * * * * * * * * * * * * * * * * * * 2
+ 0 * * * * * * 2344 0 0
+
+G 3 2052 * * * * 398 * * * * * * * * * * * * * * 3
+ 0 * * * * * * 2951 0 0
+
+W 4 * * * * * * * * * 1788 1254 * * * * * 2839 * 2724 * 4
+ 0 * * * * * * 4192 0 0
+
+D 5 * * 1829 3329 * 3546 * * 3578 * * 3470 * * * 1476 * * * * 5
+ 0 * * * * * * 5339 0 0
+
+I 6 * * * * 2497 * * 2435 * 1324 4200 * * 4094 * * * 3984 * 4009 6
+ 0 * * * * * * 6487 0 0
+
+F 7 3159 * 3289 * 2060 * * 3178 * 2446 * * * * * 3295 * 3272 * 4427 7
+ 0 * * * * * * 6963 0 0
+
+G 8 * * 2374 4399 * 2746 * * 3421 * * 3629 * 4377 3192 2109 4410 * * * 8
+ 0 * * * * * * 7112 0 0
+
+W 9 * 4454 4075 * 2869 * * 4252 4369 2768 * * * * * 2106 4318 3451 4430 3469 9
+ 0 * * * * * * 7112 0 0
+
+F 10 2475 * * * 2292 * * 3627 * 2547 3773 * * * 4590 4451 3524 * 4625 3716 10
+ 60 * 4625 * * * * 7428 0 0
+
+R 11 3558 * * 3954 4833 * 4900 * 3536 3686 4624 4531 * 2959 3286 2779 * 4631 4572 3736 11
+ 0 * * * * * 0 7605 0 1027
+
+D 12 * * 5060 3720 * 5051 5039 4929 2517 3107 * 4846 * 3949 2303 3831 3815 3910 * * 12
+ 106 3818 * 2711 239 * 0 8025 1214 1027
+
+V 13 4845 * 4859 4879 2817 * 4983 3415 * 2116 4978 4812 * * 4083 4864 4129 2734 5027 * 13
+ 0 * * * * * 0 8321 0 1027
+
+L 14 3616 5022 * * 2991 * * 5132 3940 1797 3435 * * * 4612 * 3685 3232 * 3989 14
+ 0 * * * * 0 * 8509 0 1027
+
+A 15 3262 * 2560 4124 * 4675 5023 * 2903 5046 * 5107 4910 3073 3557 2763 * 5533 * * 15
+ 92 * 4015 * * * * 8573 0 0
+
+S 16 4143 5086 * 5027 * 3635 4622 * 3346 5124 * 3411 5489 3472 3987 1580 5002 * * * 16
+ 0 * * * * * 0 8433 0 1412
+
+L 17 4191 3998 * 4010 4805 * * 3118 5067 1411 5033 * 5071 4920 * 4826 * 2886 * * 17
+ 300 * 2415 * * 0 * 8463 0 1412
+
+G 18 5003 * 3378 3295 * 3000 * 4802 5150 * * 2866 2730 5006 4823 2319 * * * 5213 18
+ 221 3136 5148 794 1240 1521 618 8477 1713 2188
+
+L 19 4301 * * 5307 3844 5298 5012 2813 * 1734 2971 * * 5311 4384 * 5353 3320 * 5071 19
+ 73 4337 * 1416 677 2406 302 8943 1497 1955
+
+W 20 3305 * 3239 3708 * 4540 * 3091 4504 3428 * 3854 5466 * 4388 2703 3214 * 5772 * 20
+ 0 * * * * 427 1966 9011 0 1747
+
+N 21 5483 * 5853 4422 * 5076 4760 3959 3561 5269 3611 3089 3177 3126 4365 6186 3701 3709 * 4966 21
+ 29 5664 * 1000 1000 * 0 9719 1038 1049
+
+K 22 3599 * 6046 4005 * 6059 4115 4521 2863 * * 4096 2286 3850 2890 3732 5067 * * 6211 22
+ 0 * * * * * 0 9974 0 1049
+
+H 23 6468 5272 4644 3656 4833 3588 4348 5119 2995 5393 6286 4740 3162 4309 3592 3507 3122 * * * 23
+ 19 6283 * 2322 322 * 0 10116 1027 1049
+
+G 24 5469 * 6232 6262 3035 3518 * 3577 4278 2790 4738 4158 3683 6219 6235 5268 4672 3385 6562 3437 24
+ 28 5682 * 4807 52 0 * 10146 1093 1049
+
+K 25 4620 5480 4562 5639 * 5070 4275 5367 2232 6571 * 3004 * 4903 2259 4856 3450 4250 * * 25
+ 89 4372 6404 0 * * * 10332 1784 0
+
+L 26 5528 3747 * * 3593 * 6532 1207 * 2877 6548 * * * * 6137 6669 2439 * 5523 26
+ 83 4158 * 333 2278 0 * 10351 1721 1002
+
+L 27 2928 4237 * * 4454 2744 * 3024 * 2460 5557 6497 * 6252 * 4326 4985 2489 * 6509 27
+ 0 * * * * * * 10444 0 0
+
+F 28 6118 * * * 2594 5824 * 2058 * 1710 4701 * * * * * * 2352 * 5494 28
+ 0 * * * * * * 10368 0 0
+
+L 29 4120 4233 6337 * 6586 6318 * 2207 * 2524 3719 * 6329 5860 6711 4732 3613 2202 * 6405 29
+ 0 * * * * * * 10561 0 0
+
+G 30 6252 * * * * 133 * * * * * * * * 5277 4880 * 6065 * * 30
+ 0 * * * * * * 10567 0 0
+
+L 31 4280 * 2978 4029 5072 5997 3775 * 3627 4569 5144 3960 2406 5113 3975 3953 4758 5296 * 5792 31
+ 0 * * * * * * 10567 0 0
+
+D 32 4206 6757 5889 3229 5639 4105 6716 4658 5239 6947 6065 4063 2615 5090 4448 2567 3471 3799 * 7105 32
+ 0 * * * * * * 10567 0 0
+
+N 33 3905 6279 3490 5857 * 1287 6618 * 3986 5580 * 2728 7300 4626 4990 3631 * * * * 33
+ 0 * * * * * * 10567 0 0
+
+A 34 2465 3286 6279 * * * 4868 4727 * 5440 * 5198 * * 5636 1773 3979 2287 * * 34
+ 24 * 5902 * * * * 10567 0 0
+
+G 35 5301 * 5372 * * 148 * * * * * * * 5870 * 5983 * 6068 * * 35
+ 0 * * * * 862 1152 10403 0 1198
+
+K 36 * * * 6337 * * * 6014 198 * * * 5984 5428 5044 * 6175 * * 5863 36
+ 0 * * 1000 1000 0 * 10555 1000 1000
+
+T 37 * * 6094 6604 * 5992 * * 5709 * * * * 5168 5448 1091 1311 * 5872 * 37
+ 15 * 6590 * * * * 10567 0 0
+
+T 38 3555 4879 5257 5262 6609 6744 6336 6266 * 4332 * 5212 * 6083 6271 1832 1401 6581 * 6724 38
+ 0 * * 0 * 0 * 10555 1000 1000
+
+L 39 4542 * * * 3013 * * 3138 * 1017 4969 6424 * * * 5230 4260 3854 * 4887 39
+ 0 * * * * * * 10651 0 0
+
+L 40 3917 3700 * * 3534 4673 * 1895 * 2471 5213 * * 5434 5340 6628 6874 2406 * * 40
+ 17 * 6408 * * * * 10651 0 0
+
+H 41 3878 6710 4521 4388 6441 5226 5454 6979 2712 4590 7135 2276 5901 3612 2893 4020 5585 * * 4686 41
+ 0 * * * * 0 * 10639 0 1009
+
+M 42 2999 5432 * 6956 5092 5131 5769 4227 3027 4401 7135 4761 * 3476 2250 3657 4496 4558 5896 5858 42
+ 0 * * * * * * 10651 0 0
+
+L 43 6005 7239 * * 2297 * 5770 2783 * 1529 5587 * 6442 * 5918 6464 5175 3340 5759 4080 43
+ 13 6753 * 5285 37 * * 10651 1030 0
+
+K 44 4187 3748 5770 5041 3414 6618 5591 4532 4470 2816 5959 4977 6408 6584 4192 3291 3073 3389 5284 * 44
+ 184 3060 * 2248 341 * * 10651 3220 0
+
+N 45 4037 * 4395 3489 5930 2128 5327 6071 3805 4178 * 4105 6767 3399 4464 4744 3817 * 5271 4348 45
+ 191 5146 3387 3209 165 * * 10526 1443 0
+
+D 46 4651 6598 3724 3892 * 3114 5005 6738 2801 4919 * 2895 * 3837 3748 3798 4691 4553 * 4566 46
+ 44 5679 6613 668 1432 3945 97 10477 1202 2862
+
+R 47 4377 5503 3286 3355 4915 4610 6507 5067 2805 4034 5060 4362 4576 4249 4460 3362 5335 4532 * 5230 47
+ 44 * 5056 0 * 2783 227 10482 1000 3034
+
+L 48 3985 * 4506 5822 2567 4191 5444 4013 4241 3200 4483 5404 3598 * 4770 4210 4268 4608 * 3826 48
+ 189 3268 5700 4334 73 2378 308 10470 2978 3179
+
+A 49 3790 6734 4624 4328 5701 * 5806 3716 4483 3751 4951 3724 3089 5781 3832 2850 5057 3474 * 5432 49
+ 447 1909 * 664 1438 3943 97 10515 4986 3042
+
+T 50 4428 * 3359 3570 * 4768 4906 3583 5126 4975 5985 3746 3351 3645 4225 3227 4059 4068 * 6683 50
+ 149 3348 * 1977 423 3331 151 10514 2623 3072
+
+L 51 5905 6480 4737 4512 6350 3738 3785 6238 3810 3696 * 4959 4116 5636 4971 4318 3338 3213 * 2551 51
+ 74 4604 6810 1003 997 * 0 10525 1743 2870
+
+Q 52 4342 * 4086 3468 4334 2936 5707 3475 3970 6645 6681 6636 4032 4242 5942 2373 5590 4592 * 4922 52
+ 29 6574 6769 1000 1000 * 0 10464 1000 3184
+
+P 53 3196 6381 4252 4060 6281 6784 4573 3762 5780 5665 * * 1991 4865 5391 3340 2965 4199 * * 53
+ 194 2990 * 3700 115 223 2802 10461 3021 3362
+
+T 54 4812 * 4853 4664 5434 4347 6020 4019 4140 4439 6653 4613 5062 4528 5212 3646 1520 4092 * * 54
+ 17 6427 * 1000 1000 * 0 10645 1046 1211
+
+W 55 5050 7057 5598 4899 4880 4626 5030 2663 5245 2476 4502 4192 3768 * 4634 3878 4138 4158 7183 4684 55
+ 23 5971 * 1156 859 948 1054 10645 1290 1211
+
+H 56 4536 6924 3531 3471 4961 2145 7196 4704 3437 5714 * 4783 5837 4195 4344 3332 4262 5464 * 5290 56
+ 116 3695 * 1532 612 0 * 10675 2521 1000
+
+P 57 4404 4788 5166 3725 3700 4526 7100 3067 5753 4228 5338 4460 3326 4923 5902 5167 3928 3293 * 3658 57
+ 0 * * * * * * 10689 0 0
+
+T 58 4378 4482 2947 3947 5678 5694 6882 4916 4103 5298 * 3777 4493 3728 5848 3742 2592 4762 * 4036 58
+ 85 4316 7161 2565 267 * * 10689 1901 0
+
+S 59 4081 6824 6773 3471 3911 4516 5948 3577 5187 5922 6008 4593 * 4092 3483 3065 3300 3337 6890 4468 59
+ 160 3255 * 1034 967 * 0 10680 2978 1000
+
+E 60 4480 5633 4617 3673 5277 2349 5048 5768 3072 4304 * 4381 5595 4190 5162 4123 3440 4227 * 5548 60
+ 93 5113 4893 4973 47 * 0 10680 1531 1000
+
+E 61 4856 6591 3683 4256 5697 6972 4061 3674 3159 4201 6706 5496 3921 5439 3403 3654 3268 3764 * 5583 61
+ 23 * 5989 * * * 0 10592 0 1652
+
+L 62 4615 6622 6641 4745 3575 5155 * 2441 5280 2639 3795 5840 5344 * 5281 6563 5360 2433 6718 4323 62
+ 27 6605 6973 3187 168 1854 467 10713 1373 2001
+
+A 63 4427 6788 4300 2507 6816 5362 5538 4165 3839 4103 * 4843 4879 4380 3813 3721 3286 4285 * 4021 63
+ 24 5912 * 671 1428 1925 441 10504 1192 1846
+
+I 64 4269 5779 * 5581 3187 6288 5225 2704 6683 3407 4870 4107 * 5926 6254 3992 5236 2890 4148 3326 64
+ 151 3514 6383 3166 170 2145 370 10563 2609 1798
+
+G 65 4575 6717 2351 4084 6675 3106 4635 6476 3957 4917 * 3672 3890 3839 4853 3783 5142 6633 * 4130 65
+ 104 3850 * 1937 437 644 1474 10520 2381 1810
+
+N 66 3944 * 2839 3462 5647 2186 4515 * 4233 6837 * 3098 6930 * 4677 3050 4588 5943 6694 7186 66
+ 850 1235 5624 2018 409 1093 913 10598 7132 1174
+
+I 67 4490 4753 5234 3997 3698 5822 4668 3015 5388 3573 6484 6757 6383 7328 3611 3892 4475 2808 * 3508 67
+ 45 6003 6019 4524 64 944 1059 10534 1113 1581
+
+K 68 4465 5178 3621 3818 * 5637 5528 4585 2709 4667 * 3827 3960 3570 3255 5180 4557 4177 5616 5075 68
+ 135 3480 * 4412 69 * 0 10540 2672 1445
+
+F 69 4622 4942 5576 5659 2757 * 6666 2743 5650 2211 4766 6612 6975 6621 6256 6764 5969 2646 7369 3759 69
+ 34 7015 5983 0 * 851 1166 10531 1004 1603
+
+T 70 5494 5816 6989 3347 6757 6305 4638 4127 4815 3397 4822 3575 6666 3245 4904 3929 2943 3009 * 5937 70
+ 0 * * * * * 0 10658 0 1560
+
+T 71 5150 5793 6666 5598 2739 6305 * 2030 6762 2182 4772 * 5900 5019 5662 * 4836 3218 * 4642 71
+ 58 * 4672 * * * 0 10658 0 1560
+
+F 72 4331 5794 * 4648 4850 6942 * 2507 6710 3755 5992 6662 6383 * 5154 * 4404 2608 2070 3739 72
+ 30 5600 * 1400 687 2866 213 10507 1247 2237
+
+D 73 * * 676 3146 6750 4540 6787 6857 * * * 4414 * 5263 4780 4971 4994 * * 5767 73
+ 54 4757 * 1739 514 1033 967 10438 1738 2052
+
+L 74 4295 4733 5040 6980 4109 6825 * 3096 * 2487 6612 * * * 5542 3987 1659 4025 6876 5072 74
+ 25 6964 6779 4087 87 1924 441 10576 1000 1459
+
+G 75 3167 6917 5023 5170 5812 2253 6659 5824 5037 * 6893 4799 1741 * 5052 3389 5061 4750 * * 75
+ 14 6727 * 2585 263 1146 867 10594 1000 1440
+
+G 76 5200 * 5088 4682 5775 791 5938 6086 4775 5281 * 5259 6786 6891 6743 3812 5144 5222 * 4802 76
+ 111 3898 7132 2153 367 * 0 10667 2292 1155
+
+H 77 4389 * 3408 3943 3499 4453 3598 3844 5659 4581 * 4596 5350 2530 * 3833 5944 4082 * 4043 77
+ 65 4907 6583 3149 173 694 1389 10658 1580 1317
+
+I 78 4825 5699 3052 2448 6889 3894 5395 4514 4930 4707 6087 3785 3774 4383 3847 4390 4329 5326 6538 5923 78
+ 163 3354 6823 2497 281 * 0 10684 2844 1200
+
+Q 79 3850 * 2708 2835 7146 4736 5677 5960 3243 5277 * 4941 4583 4352 2836 3709 4505 6354 6392 5804 79
+ 96 4148 6957 3448 139 1894 452 10667 2333 1539
+
+A 80 4447 * 5872 5508 2483 5152 4255 3902 * 2675 4569 4699 4338 4911 6519 4428 4448 5141 6780 2961 80
+ 39 5215 * 2617 257 * 0 11556 1332 1513
+
+R 81 3665 * 3003 3707 5359 5853 5945 4852 3725 3585 4810 4625 4768 5295 2888 4389 4120 4001 * 5195 81
+ 59 4644 * 847 1171 400 2047 11556 1602 1513
+
+R 82 3537 5798 4992 3536 4609 4246 5528 6192 3822 5294 7200 3948 4149 3828 4085 2655 3274 5954 * 5847 82
+ 25 * 5882 * * * 0 11594 0 1000
+
+L 83 3622 4749 7145 3929 5061 5590 7420 4122 3844 2610 3722 5006 7084 3710 6728 3771 3779 3860 * 4432 83
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+I 190 * * * * 3526 * * 1857 * 1549 * * * * 5789 5646 5090 2132 * * 190
+ 0 * * 0 * * * 9404 0 0
+
+//
+�HHsearch 1.5
+NAME 81e79b5741c9fbdcdbbebf2c8b14e32c
+FAM
+FILE 81e79b5741c9fbdcdbbebf2c8b14e32c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:06:51 2013
+LENG 163 match states, 163 columns in multiple alignment
+FILT 142 out of 1148 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEECCEEEEEEEEEEECCCCEEEEEEEEECHHHCCCCHHHHHHHHHHH
+HHHHCCCCEEEEECCCHHHHHHHHCCCEEEEEECCCEEECEECCCCCEEEEEEECCCCCCCCC
+>ss_conf PSIPRED confidence values
+9799992788998999999999999764367668999999863689858999998998999999999279988999999997888489899999999999
+999869969999348379999998899999674463120403189976999998899988679
+>Consensus
+xxxxxxxxxxxxxxxxxxlxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxvGxxxxxxxxxxxxxxixxxxvxxxxrxxGxgxxllxxxxx
+xxxxxxxxxxxxxxxnxxxxxyxxxGfxxxxxxxxxxxxxxxxxxxxxxxmxxxlxxxxxxxx
+>81e79b5741c9fbdcdbbebf2c8b14e32c
+LLDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIGGICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKD
+HMQKQNIEYLLTYADNFAIGYFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDYGR
+>gi|328907443|gb|EGG27209.1| acetyltransferase, GNAT family [Propionibacterium humerusii P08]
+--------------------QVYDDWASdpevtrflTWPTHSsvdvsravVGPWVDSY--eDPGTFNWGIELieDGTLIGQTSV-VKEDLT-VGLvnVGY
+VVGRRWWGKGYCTEALVAVMNYLFAvAEANKveASHDPANvASGRVMEKAGMVAEGLRRA----SCLSGsmIRVQLYHGM----------
+>gi|320156268|ref|YP_004188647.1| acetyltransferase [Vibrio vulnificus MO6-24/O]gi|319931580|gb|ADV86444.1| predicted acetyltransferase [Vibrio vulnificus MO6-24/O]
+--KFEHKKVEPSNIDFQSLVGELNSSLTQITSDSgESSFASDAFDSSKDGCIVVYLNNVAVACGVFRYHEN-EVCELKRMYSN----KSGAGSYLLKHLE
+CYAVSKGYRKaiLSTRRVNsKAVSFYERNSYSES------SAYGKYVGVKRSICLSKVLVT------
+>gi|302526259|ref|ZP_07278601.1| predicted protein [Streptomyces sp. AA4]gi|302435154|gb|EFL06970.1| predicted protein [Streptomyces sp. AA4]
+EIAFLPPSAAeDTALVALLTDLVNTVYAKAEAGLWAGSADRTNAGEmaglvRAGEIAVARIDGTVVGSVRIQRLAE-DLGEFGLLAASPEVRGAGIGRAL
+VEFAESCCRAQGCTRmqleLLVPreWTHPSkeflAQWYGRLGYQVVeTSTIDGPHPELAPLlatPCDFLIWHKDL--------
+>gi|168701123|ref|ZP_02733400.1| hypothetical protein GobsU_16469 [Gemmata obscuriglobus UQM 2246]
+------------------FSMLRKRYETQVMRaaGVPSWWHECvWGTLDPVEFrMVDKLASGFIAArALVWELEGygwrwgFPSAGVLDIQVRSDLRRLG
+LAKLLLSQILRFLQDQFFGICEVQapAADpALVGLCRSVTLDH----------------------------------
+>gi|290954852|ref|YP_003486034.1| acetyltransferase [Streptomyces scabiei 87.22]gi|260644378|emb|CBG67463.1| putative acetyltransferase [Streptomyces scabiei 87.22]
+----------------------------------RTEKEQRVRESRTHASLVF-AGDDCLGWCQFGSPAElpeikrerryekdltvLPDWRITCFFTGKG
+LRKRGVAHAALEGALTQISRNGGGTVEGYPeethgrtlsgSFlhtGPMAV-----fenhgFTRTRPISP-----------HRWVV----tltvDP-----
+-
+>gi|301165969|emb|CBW25543.1| hypothetical protein BMS_0636 [Bacteriovorax marinus SJ]
+--HWRCMNTVIEHAKLTDVNELLSLYLSvygedyplDIG-TKRSVMEEALNHPEENHWYVMRcTdSNQIIVSGIIQIERENLIGKLSGVAVHDEYRKHGL
+ATGFIGHVVNEVLKEKkLvNSIYATARTiShsSQTMLMKNGFIPLGFFPNCRRIKTYETlallaiFADGVLEKRKVPTVVP---
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
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+F 127 4442 4690 * * 824 * 6513 * 6837 3846 4605 * * * 6933 * * 5890 5346 2553 127
+ 0 * * 0 * 0 * 10947 1005 1005
+
+T 128 5303 * 4129 2588 * 6799 6752 4245 3219 6814 5636 4412 6903 3252 3918 2895 3456 3698 * 6077 128
+ 13 * 6851 1000 1000 * * 10933 1047 0
+
+K 129 3708 5647 4299 3284 4883 7253 5797 3661 3538 3484 4862 5703 3114 7083 4779 4819 4190 3354 7143 5098 129
+ 97 6823 4154 2000 415 0 * 10772 1000 1000
+
+E 130 5536 4841 4647 2362 6099 6481 * 3731 4276 3636 4806 5735 * 5641 4688 4060 3280 2716 6647 4736 130
+ 433 4524 2212 318 2338 288 2468 10646 1638 1852
+
+H 131 3774 6249 3895 4707 * 1379 4180 5830 5195 3577 * * * 4193 6385 3436 5395 4564 * 6084 131
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+
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+ 322 * 2323 * * * 0 10091 0 3951
+
+M 133 4083 5263 5680 3929 4427 5710 5777 4111 4536 2446 3677 5745 5491 3787 4538 5885 4711 2737 * 5516 133
+ 97 * 3944 * * 5207 40 9635 0 5399
+
+P 134 * * 3019 2874 * * * 5632 3651 4593 * 5317 2672 5612 1821 * 3830 5509 * 5561 134
+ 33 * 5485 * * * 0 9496 0 5633
+
+Q 135 4351 * 2806 3470 5533 4256 5410 5186 3298 5437 * 2847 * 2818 3394 * 4321 * * 4567 135
+ 550 * 1657 * * 3150 172 9340 0 5721
+
+E 136 3849 4796 3987 4015 5066 4026 4792 4039 4033 4952 5098 3483 * 4699 2579 4004 3918 * * 4829 136
+ 54 4768 * 0 * 2422 298 8790 1076 6547
+
+K 137 4197 * 4236 4266 * 4384 * 2200 4361 4984 * * 5301 4176 2989 3362 4275 5545 * 3087 137
+ 121 3641 * 742 1314 5474 33 9232 1370 5793
+
+W 138 5488 * 5221 5055 3197 5277 4234 5304 4254 3264 * * 5250 4046 1988 5111 5152 * 3216 4396 138
+ 39 * 5247 * * 1504 627 9163 0 5713
+
+K 139 3982 * 5591 3655 4102 4452 4022 3923 2409 4086 5637 5602 5572 5665 3071 4113 * 4013 * 4721 139
+ 0 * * * * 267 2567 9548 0 4435
+
+G 140 5052 * 3709 3225 6061 2473 3596 * 4008 5020 * 3030 4445 * 2808 4937 5070 4563 * * 140
+ 0 * * * * * 0 10074 0 1550
+
+Y 141 5755 * 4855 4241 2607 5825 * 3840 4776 2961 4749 * 5534 * 4410 6065 5555 6072 4793 1813 141
+ 0 * * * * * 0 9803 0 1550
+
+I 142 4726 * 5212 * 3501 * 5774 3843 6024 2977 5693 * * 5768 5684 4735 * 3213 4774 1405 142
+ 55 * 4749 * * 915 1090 9760 0 1550
+
+K 143 4864 * 4515 3168 5763 3177 4947 * 2659 4121 5641 3845 3756 3912 3605 3957 5694 5881 * 5611 143
+ 89 5723 4604 1585 585 * 0 9676 1005 1518
+
+D 144 4604 * 2601 3259 * 3405 * 5665 3649 4416 * 2982 3449 3704 * 4024 4566 5568 * 5094 144
+ 1218 956 4194 1792 491 530 1701 9543 4656 1865
+
+Y 145 * * 4588 5440 3453 1725 5896 * 4571 5677 5567 3400 3597 * 4537 4720 * 4612 4640 3283 145
+ 26 5829 * 2000 415 1004 997 9502 1135 1925
+
+D 146 4477 4629 3291 2122 5481 3745 4619 5644 4567 4571 4576 3299 5657 5867 4514 4127 5876 5647 5481 * 146
+ 29 5643 * 1585 585 978 1022 9507 1005 1394
+
+G 147 4658 * 1675 5489 * 2395 5697 * 5643 5417 * 3472 2939 5734 4630 6049 * 5813 * 4068 147
+ 0 * * * * * 0 9439 0 1112
+
+G 148 2439 4564 4567 3518 4425 2967 4454 * 4682 3883 * 4963 * * 5560 2965 5355 3445 * 5692 148
+ 33 * 5463 * * * 0 9296 0 1112
+
+T 149 4387 * * * 4594 * * 2458 * 2293 5810 5362 * * 4581 5759 3464 2634 4438 3006 149
+ 35 5383 * 0 * * 0 9249 1000 1282
+
+L 150 5680 5569 4523 * 3432 * 4727 2719 5322 1863 * 5810 4437 * 4077 * 4372 3184 * 4264 150
+ 0 * * 1000 1000 0 * 9249 1005 1282
+
+M 151 5930 5751 * 5293 4530 * 5411 4362 * 1919 1302 * * * * * 5403 5718 5315 3532 151
+ 0 * * * * * * 9330 0 0
+
+E 152 4371 4895 * 2269 * * 4340 5307 3621 3910 5528 * * 4497 3215 3101 * 2945 5513 4436 152
+ 0 * * * * * * 9105 0 0
+
+C 153 * 3814 * * 5123 * 5358 4470 1819 1776 * * * * 2887 * * 5570 3793 5210 153
+ 80 5095 5331 0 * * * 9014 1103 0
+
+Y 154 4356 * 3526 * * 5256 4154 5289 2601 4053 5580 4219 3699 5382 3024 * 4285 4215 3347 5087 154
+ 0 * * * * * 0 8734 0 1053
+
+I 155 * * * * * 5028 4835 2742 * 871 4743 * 4978 * 3839 * 4010 4758 * * 155
+ 59 * 4649 * * * 0 8374 0 1053
+
+H 156 4366 4454 2869 * 4342 4583 2582 * 3425 * * 4622 4213 4247 3492 4567 3416 4443 * * 156
+ 0 * * * * 0 * 7306 0 1219
+
+P 157 3473 * 2363 4485 * * * * 3271 * * * 1531 4160 * * 3255 4044 * * 157
+ 0 * * * * * * 7124 0 0
+
+Y 158 3796 * 4106 2320 * * * * 2437 * * 3023 * 2960 * 3603 * 3714 * 3737 158
+ 0 * * * * * * 6311 0 0
+
+V 159 3669 * * 3724 3752 * * 2662 * 2581 * * 2627 * 3538 * * 2333 * * 159
+ 0 * * * * * * 5625 0 0
+
+D 160 * * 2384 3536 3274 * 3509 * * * * * 2373 3506 * 3532 2613 * * * 160
+ 0 * * * * * * 5355 0 0
+
+Y 161 * * * 2907 2849 * * * * * * * * * 2842 * * 2914 * 1134 161
+ 0 * * * * * * 4037 0 0
+
+G 162 * * * * * 1989 * * * 1426 * * * * * * 2389 2434 * * 162
+ 0 * * * * * * 3260 0 0
+
+R 163 2487 * 2389 * * * * * * * * * * * 665 * * * * * 163
+ 0 * * 0 * * * 3260 0 0
+
+//
+�HHsearch 1.5
+NAME 8237cebaaa25ac6a2b0d49c9d5837da5
+FAM
+FILE 8237cebaaa25ac6a2b0d49c9d5837da5
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:52:06 2013
+LENG 188 match states, 188 columns in multiple alignment
+FILT 83 out of 85 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEECCHHHHHCCCCCCCCC
+CCCEECCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
+>ss_conf PSIPRED confidence values
+9965414557703789992798677767613388999999998378762456775152368420340105678808356978556899970798885688
+9857674896647899876116876789997662348533554468762420344668964337765677765899985365556688
+>Consensus
+xxxxxxxxxxxxxLxliAlNxPxxGdlgGixGADxxCxxqAraaGlxgTfRAfLSsxxqdlxxiVxxxDRxxxPxvNlkGevLfxswxxlfxxxxxxxxx
+xxxIxsfngxdVltdxxwPqKxvWhGSxxxGxxxxdxxCxxWxsxxxxxxGxAsxlxxxxllxqxxxsCxxxxivLCiExxxxxxxxx
+>8237cebaaa25ac6a2b0d49c9d5837da5
+APLAHTHQDFQPVLHLVALNTPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDSLFSGSQGQLQP
+GARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTETTGATGQASSLLSGRLLEQKAASCHNSYIVLCIENSFMTSFSK
+>gi|328709259|ref|XP_003243912.1| PREDICTED: hypothetical protein LOC100573836 [Acyrthosiphon pisum]
+-----------KMLRIAALNEPYTGNMHGVQSVDYSCYRQSQRAGLHGAFKAFLSSRINNLKTIVHESDRD-LPVVNIKGDVLFNSWKDIFSENGAFISQ
+QPRIYSFSGKNVLTDFTWPQKTIWHGSDMSGDSAVDGNCDAWNSESSDKRGLGSSLTpksdrQAKLLDQDSaFDCRNFFVVLCVEI--------
+>gi|268566099|ref|XP_002639634.1| C. briggsae CBR-CLE-1 protein [Caenorhabditis briggsae]
+---------KDRVIHMIALSQPFAGNIHGLRGADLQCYREARASGYTTTFRAMLSSNVQDLVKIVHSVDHD-TPVVNIAGHHLFASWRSFVNG--AKINQ
+HARLFSFDRHDVLNDSRWPDKRVWHGSKEGGIR-ADQYCDGWRRSDASITSLAGQIYSNTTIFQSSgpSTCENKLVILCVENM-------
+>gi|313229600|emb|CBY18415.1| unnamed protein product [Oikopleura dioica]
+----------GKRIRLVALDVPMSGLTHGVRGLDHRCYNAARSSRLRGTFRGFVSAVVQDINTIVRRSERYDYPICNSKDELLFNSWNELFSDESNkGAL
+YGKSIYSFSGRDILTDRRWPNKSIWTGSTPDGRRNPSKYCDGWRSANSNNVGLSSNLSAG-LLNQQVSKCSERKVILCVENAA------
+>gi|149584137|ref|XP_001519691.1| PREDICTED: similar to type XVIII collagen alpha 1 chain, partial [Ornithorhynchus anatinus]
+---------LSPQLRLVALNAPLPGHLGGLRGADLQCHQQAREAGLYGTFRALLAASGQRLASLVHRADRV-LPIVNLQGQRLARTWESLLESKTRRAhG
+LRAPIYTFDDRAVLEDPLWTQKAAWIGPSQKDSPGPQGTCQDWRMG-SGVQGLAALLDEREFPRVASLDCAESLAVLCIEIAFP-----
+>gi|76152955|gb|AAX24626.2| SJCHGC06390 protein [Schistosoma japonicum]
+-----------KKLYLIAQNEPLRGDLKhgdRITGAhagsIFACQ---RAANLKGLGRAFyplLSTDMFNMDYVVPPTYRYGVPLVNLYGEVLFDDFMSL
+V---EGRSRPQAKILNFDGADIADDIVAP--CIWIGQKPIylngdYEYAAQSKCRNWQSTYPGENGF---------------------------------
+---
+>gi|149920904|ref|ZP_01909366.1| putative lipoprotein [Plesiocystis pacifica SIR-1]gi|149818303|gb|EDM77756.1| putative lipoprotein [Plesiocystis pacifica SIR-1]
+------------------TSEDFSGDLGGLTGADAACQQLAEAAGLTGDYLAWLSASPlsapasrfvQsnALYRLV-------------DGTPVAANWGD
+LVDDT---LAAAINMDEFG------ATVGP-HRVWTNTSSSGHYDTSSTCLGWHSED--GTGRAGHTNEVdKnWTSHAFHPCSFSAKLYCVQ--------
+-
+>gi|121606464|ref|YP_983793.1| hypothetical protein Pnap_3576 [Polaromonas naphthalenivorans CJ2]gi|120595433|gb|ABM38872.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
+-----------------------GADLGGLAGADAYCQTLAASANAGGkNWRAYLSAPASGASPAVNARERIgRGPWQNARGVVVATSVDNLHSADNQ-L
+TKQNsltekgEVVsgrgdAVNMHDMLT-----------GSTADGRLDTsapDTTCGGWTQSG--------------------------------------
+----
+>gi|24213395|ref|NP_710876.1| hypothetical protein LA_0695 [Leptospira interrogans serovar Lai str. 56601]gi|24194153|gb|AAN47894.1| LenA [Leptospira interrogans serovar Lai str. 56601]gi|86753692|gb|ABD15102.1| LenA [Leptospira interrogans serovar Pomona]
+---------------FIATNngAGYNGNLGGISGADAKCA-AAKSSSLTGAYKALIVDGPTG-RQVISALDGS----VDKKDWVLYSNKQYRRSDGTtIT
+FTTNAnSIVIdnlQNGID-----SGAQKFFWNGLGNNvGfLWEPLSNCNNWNSADGLITGQAGNTTelqADItpegAFTVDNHACNTNLNLLCVE-----
+----
+>gi|307823103|ref|ZP_07653333.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]gi|307735878|gb|EFO06725.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
+-----------------------GAELGGLAGADAHCQKLAEAAGSVNkTWHAYLSTQAADGQPVINARDRIgSGPWHNAKGAEVAKNIAHLHGNTLela
+rlgNNLSRTTV-LTEKNETVNGAGDKPnQHDILTGSQPDGTAftdAADHTCKNYTrSAED----------------------------------------
+-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 1000 * * * * * * * * * * * * * * 1000 * * * * 1
+ 0 * * * * * * 1118 0 0
+
+P 2 * * * * * * * * * * * * 0 * * * * * * * 2
+ 0 * * * * * * 1487 0 0
+
+L 3 2730 * * * * * 3982 1881 * 2613 3225 * 2396 * * * 4214 * * * 3
+ 0 * * * * * * 2121 0 0
+
+A 4 1560 * * * 3563 * * 4360 * 4402 * * 2758 * * 2694 4619 2865 * * 4
+ 0 * * * * * * 2194 0 0
+
+H 5 * * * * * * 492 4402 * * * 4048 3524 * * 3410 * * * * 5
+ 0 * * * * * * 2194 0 0
+
+T 6 3410 * * * * * * * * * 4048 * * * * 1926 1083 3181 * * 6
+ 0 * * * * * * 2194 0 0
+
+H 7 * * 3524 * 2801 * 1063 * 4048 3490 * 3410 * * * 4402 * * * * 7
+ 0 * * * * * * 2194 0 0
+
+Q 8 * * * * * * 2174 * * * * 3671 * 2020 4956 4304 2901 2567 * 3884 8
+ 820 4481 1364 2408 301 * * 2384 1081 0
+
+D 9 2743 * 1620 2495 * * * * 3841 3964 * 2617 * 4293 * * * * * * 9
+ 295 4293 2901 2807 222 0 * 2553 1000 1282
+
+F 10 5376 * 4569 3942 2343 4461 * * 2391 3864 * * * * 4420 2304 3923 * 4968 5660 10
+ 65 4506 * 0 * 851 1166 2967 1029 1064
+
+Q 11 5595 * 2743 * 5257 2041 * 4118 4760 * 5543 4300 * 2370 4369 3457 5082 4977 * * 11
+ 0 * * * * * 0 3085 0 1005
+
+P 12 5929 * * 5445 * * 5422 * 2303 5282 4998 * 1264 4491 2879 6157 4663 5191 * * 12
+ 0 * * * * * 0 3218 0 1005
+
+V 13 2150 * * * * 4207 * * 4095 * 3961 5377 * 2599 3612 3178 5900 2325 * * 13
+ 20 6204 * 3700 115 0 * 3219 1000 1005
+
+L 14 * * * * * * * 3105 * 178 * * * * * * * * * * 14
+ 0 * * * * * * 3270 0 0
+
+H 15 * * * * * * 823 * * * * * * * 1401 * * * * 4154 15
+ 0 * * * * * * 3270 0 0
+
+L 16 * * * * 2924 * * 5504 * 827 2098 * * * * * * 4347 * * 16
+ 0 * * * * * * 3617 0 0
+
+V 17 2241 * * * * 6327 * 1272 * * * * * * * * * 1558 * 5487 17
+ 0 * * * * * * 3617 0 0
+
+A 18 0 * * * * * * * * * * * * * * * * * * * 18
+ 0 * * * * * * 3617 0 0
+
+L 19 * * * * * * * * * 362 * * * 4432 * * 2512 * * * 19
+ 0 * * * * * * 3732 0 0
+
+N 20 * * 4930 * * * * * * * * 225 * * * 3163 * * * * 20
+ 191 3011 * 1000 1000 * * 3732 1238 0
+
+T 21 2023 * 5875 1755 3940 5715 * * * 6466 6691 6321 * 3482 * 3915 3495 4098 * 5650 21
+ 0 * * * * * * 3732 0 0
+
+P 22 5802 * 4285 * * 3011 * * * * * * 310 * * * * * * * 22
+ 0 * * * * * * 3732 0 0
+
+L 23 * * * * 2418 * 5101 6087 * 1655 3486 * * 3813 * 4664 * 5072 * 2172 23
+ 0 * * * * * * 3732 0 0
+
+S 24 4041 * 5001 * * 1846 * * 6738 * * 3374 5308 * 3877 1967 2960 5169 5750 * 24
+ 0 * * * * * * 4277 0 0
+
+G 25 2852 * * * * 265 * * * * * * * * 5101 * * * * * 25
+ 18 6346 * 2585 263 * * 4329 1005 0
+
+G 26 6375 * 1195 6018 * 5175 5383 * * 5438 * 1339 * * 5681 4438 * * * * 26
+ 40 * 5197 * * * * 4329 0 0
+
+M 27 * * * * 4784 * * 4085 * 926 1629 * * * * * 4571 6270 * * 27
+ 0 * * * * * 0 4282 0 1034
+
+R 28 * * * * * 1052 2777 * 4307 * * 5642 * 3506 2665 5785 5396 * * 6200 28
+ 120 4704 4599 1585 585 * 0 4282 1073 1034
+
+G 29 * * * * * 89 * * * * * * * * 4723 5491 * * * * 29
+ 0 * * * * 1834 475 4314 0 1230
+
+I 30 * * * * * * * 1205 * 1288 * * 5388 * * 5241 * 3235 * * 30
+ 0 * * * * * 0 4360 0 1154
+
+R 31 2127 5241 5388 4348 * 5640 * * 5740 * * * * 4627 1358 3290 3592 5857 * * 31
+ 0 * * * * * 0 4360 0 1154
+
+G 32 5388 * * * * 180 * * * * * * * * 5242 3901 * * * * 32
+ 0 * * * * 0 * 4360 0 1154
+
+A 33 193 * * * * * * 7090 * 5487 * * * * * 5275 * 3841 * * 33
+ 54 4771 * 2000 415 * * 4351 1073 0
+
+D 34 * * 132 * * * * 4771 * * * * * * * 4293 * * * * 34
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+
+F 35 1623 * * 5275 2058 * 4926 * 5489 3341 5709 4544 * 5312 3602 * * * * 3542 35
+ 0 * * * * * * 4351 0 0
+
+Q 36 2393 * * * 6718 * 2029 * 3311 4125 5054 * * 2286 4673 5326 4529 * * 4201 36
+ 0 * * * * * * 4351 0 0
+
+C 37 * 38 * * * * * * * * * * 5275 * * * * * * * 37
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+
+F 38 3137 * * * 2411 6221 4038 * * * * 6024 * 1909 5312 * 4382 * * 1894 38
+ 191 * 3010 * * * * 4351 0 0
+
+Q 39 4960 * 5488 3602 * * 6197 * 3408 6455 * 4609 5150 1948 2318 3952 2881 6070 * * 39
+ 0 * * * * 493 1788 3991 0 1350
+
+Q 40 3136 * * 4329 * * * * * 1541 * * * 1101 5226 * * * * * 40
+ 0 * * * * * 0 4267 0 1073
+
+A 41 138 * * * * 5283 * * * * * * * * 5226 4677 * * * * 41
+ 0 * * * * 0 * 4267 0 1073
+
+R 42 3750 * * 2938 * 6499 * * 3860 * * 5100 * 2724 1165 3970 5330 * * * 42
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+
+A 43 1099 * 5709 3594 * 5695 * * 5598 7085 * 5694 3936 3995 3150 3169 6292 * * * 43
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+
+V 44 753 * * * * 6221 * 5028 5275 5312 4997 * * * 6525 2871 6292 3059 * * 44
+ 0 * * * * * * 4351 0 0
+
+G 45 * * * * * 369 * * * * * 3232 * * 5487 3872 5126 * * * 45
+ 53 4794 * 1789 493 * * 4351 1060 0
+
+L 46 2528 * * * 4917 6266 * 4741 5265 883 5666 * * * * 3855 * 5067 5686 4763 46
+ 0 * * 0 * 0 * 4324 1010 1010
+
+S 47 4074 * * * * 2474 4888 * 3260 3936 7092 6302 5472 6369 3113 4370 1826 6035 * 4600 47
+ 0 * * * * * * 4351 0 0
+
+G 48 4781 * * * * 700 * * * 5275 * 3540 5472 6629 5126 3994 3711 4794 * * 48
+ 531 1700 * 37 5317 * * 4351 1824 0
+
+T 49 4545 * 5328 * * 5312 * 4531 * 4771 * 4487 * * * 6790 385 7000 * * 49
+ 16 6486 * 2322 322 * * 4351 1000 0
+
+F 50 * * * * 1185 4771 * * * * * * * * * * * * 1700 2211 50
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+
+R 51 6790 * * * * * 3558 * 2994 5328 * * * 5312 453 * * * * * 51
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+
+A 52 70 * * * * 5487 * * * * * * 5312 * * * * * * * 52
+ 0 * * * * * * 4351 0 0
+
+F 53 * * * * 944 * * * * 3168 4782 * * * * * * * 5328 1700 53
+ 54 4771 * 1585 585 * * 4351 1073 0
+
+L 54 * * * * * * * 5074 * 130 * * * * * * * 4148 * * 54
+ 0 * * * * * * 4351 0 0
+
+S 55 3673 * * * * * * * * * * * * * * 272 3966 5074 * * 55
+ 0 * * * * * * 4351 0 0
+
+S 56 2705 * 4100 * * * 5312 * * * * 6616 * 6492 * 1187 1725 * * * 56
+ 0 * * * * * * 4351 0 0
+
+R 57 6616 * 3935 * * 5074 2827 * 4599 * 5100 4428 5168 2382 1847 3378 6718 4887 * * 57
+ 0 * * * * * * 4351 0 0
+
+L 58 2456 * 4180 4250 * 3951 * 4801 * 2373 4771 * 4196 5126 5472 5246 4098 2401 * * 58
+ 36 5328 * 3170 170 * * 4351 1077 0
+
+Q 59 3445 * 6499 3437 4771 * * * * 4821 6629 6250 * 1001 4579 4821 3039 6492 * * 59
+ 178 5328 3450 1000 1000 * * 4351 1077 0
+
+D 60 5211 * 1135 5213 * 2607 5640 * 6016 * * 2119 * * 5204 * 5553 6307 * * 60
+ 151 6451 3503 0 * * 0 4219 1000 1251
+
+L 61 3861 * * * * 2316 * 4095 * 881 4569 5449 * * * * * 3969 * * 61
+ 0 * * * * 444 1916 4051 0 1476
+
+Y 62 4271 * 2765 6272 * 6310 6360 * 2834 4783 * 4169 * 3063 2544 4181 * 4151 * 2958 62
+ 0 * * * * * 0 4330 0 1098
+
+S 63 5214 * 4041 5076 * * 4237 * 4044 * * * 2509 4538 3460 1781 2937 * * 4728 63
+ 16 * 6536 * * 1991 418 4330 0 1098
+
+I 64 2087 * * * * 5207 * 1418 * 3703 * * 5442 * 4857 6328 * 2207 * * 64
+ 0 * * 0 * 1798 489 4335 1000 1105
+
+V 65 * * * * * * * 2625 * * * * * 6707 * * * 272 * * 65
+ 147 * 3369 * * 0 * 4333 0 1063
+
+R 66 * * 5566 * 5040 * 2743 * 5049 * * 1986 4699 * 1522 3240 * * * 5382 66
+ 0 * * * * 1465 649 4206 0 1283
+
+R 67 1454 * * 6192 * * 5307 5404 3140 6366 * * 3077 * 2212 3799 * 5074 * 6494 67
+ 0 * * * * * 0 4251 0 1167
+
+A 68 2012 * * 5055 * 3064 * 6241 6661 4551 * 5027 6039 * 1766 3710 3615 4691 * * 68
+ 0 * * * * 1221 809 4251 0 1167
+
+D 69 * * 392 3219 5457 4566 * * * * * * * * * 6259 * * * 4252 69
+ 46 * 4988 * * * 0 4306 0 1077
+
+R 70 * * 6411 * 5257 3464 6314 * 6491 * * * * 5676 338 * * * 6603 5212 70
+ 12 * 6951 * * * 0 4251 0 1167
+
+G 71 5154 * 2856 3611 5753 5671 6957 1712 6325 6737 * 4667 * 6367 5049 2722 4928 5322 * 3513 71
+ 1113 2180 1658 0 * 963 1038 4254 1524 1202
+
+S 72 4960 * 3801 5618 * 2317 5140 * 3032 * * 2619 * 5162 4352 2482 3240 * * * 72
+ 197 3261 5439 0 * 698 1382 3826 1235 2067
+
+V 73 * * * * 5439 1510 * 5091 * 1758 6759 * * * * * 3896 2477 * 4475 73
+ 0 * * * * 2317 323 4013 0 1452
+
+P 74 * * * * * * * * * * * * 42 6171 * * 6105 * * * 74
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+ 86 4110 * 2322 322 0 * 2712 1005 1016
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+ 0 * * 0 * * * 2105 0 0
+
+//
+�HHsearch 1.5
+NAME 84792f9cbc9eb5adabb41b1a904360bb
+FAM
+FILE 84792f9cbc9eb5adabb41b1a904360bb
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:17:16 2013
+LENG 51 match states, 51 columns in multiple alignment
+FILT 100 out of 113 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+987788867666888880999999999999999999999999999999819
+>Consensus
+MaehxxxxxxxxxgxMDxxxhexTyxgFixxxkxgtixxxxxllxlaifxx
+>84792f9cbc9eb5adabb41b1a904360bb
+MADHSHPAHGHVAGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFLALANA
+>gi|126740567|ref|ZP_01756254.1| hypothetical protein RSK20926_04347 [Roseobacter sp. SK209-2-6]gi|126718368|gb|EBA15083.1| hypothetical protein RSK20926_04347 [Roseobacter sp. SK209-2-6]
+---------------MDTSVQEQTYEGFIKFSTRFCIFLVFVALFLAVFAT
+>gi|158422053|ref|YP_001523345.1| hypothetical protein AZC_0429 [Azorhizobium caulinodans ORS 571]gi|158328942|dbj|BAF86427.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
+MSEHGAIEYAT-ADGNDYAEHKRTYELFTALTKWGTVAVAALMVIMWFTL-
+>gi|337264849|ref|YP_004608904.1| aa3 type cytochrome c oxidase subunit IV [Mesorhizobium opportunistum WSM2075]gi|336025159|gb|AEH84810.1| aa3 type cytochrome c oxidase subunit IV [Mesorhizobium opportunistum WSM2075]
+MADHTPSGPVELGAKMDYAEHDRTYAGFLMLAKYGSLFCGAILLAMA----
+>gi|92117331|ref|YP_577060.1| hypothetical protein Nham_1786 [Nitrobacter hamburgensis X14]gi|91800225|gb|ABE62600.1| hypothetical protein Nham_1786 [Nitrobacter hamburgensis X14]
+MSDHSEMIFTT-ADGMDYPAHEQQFKTFVKIGMIATATVATIVVLMAIFIG
+>gi|296444936|ref|ZP_06886898.1| aa3 type cytochrome c oxidase subunit IV [Methylosinus trichosporium OB3b]gi|296257604|gb|EFH04669.1| aa3 type cytochrome c oxidase subunit IV [Methylosinus trichosporium OB3b]
+MGEHHK-----VASSAEFAEHEATYKGFLTLLKVSTAACVVTLLLLFFFV-
+>gi|254295291|ref|YP_003061314.1| aa3 type cytochrome C oxidase subunit IV [Hirschia baltica ATCC 49814]gi|254043822|gb|ACT60617.1| aa3 type cytochrome c oxidase subunit IV [Hirschia baltica ATCC 49814]
+--------GEYVRGQMDVKSQTATYSGFLKVTAWTSLLLTLILGY------
+>gi|83859915|ref|ZP_00953435.1| hypothetical protein OA2633_07939 [Oceanicaulis alexandrii HTCC2633]gi|83852274|gb|EAP90128.1| hypothetical protein OA2633_07939 [Oceanicaulis alexandrii HTCC2633]
+--------EEYIRGDMDISEHKASFDGFIGVSVYSTLVIVTTLLC------
+>gi|197106565|ref|YP_002131942.1| hypothetical protein PHZ_c3104 [Phenylobacterium zucineum HLK1]gi|196479985|gb|ACG79513.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
+------PASDYHRGEMDIAEQRSTYHLVMLMTKWGSLYTAALILLLTM---
+>gi|220920257|ref|YP_002495558.1| hypothetical protein Mnod_0210 [Methylobacterium nodulans ORS 2060]gi|219944863|gb|ACL55255.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
+MASSNHASNDAYGPSMDGDTHEATYRGFVRFVEIATTVVVCWILSLGI---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 4850 * * * * * * * * * 51 * * * * * * * * * 1
+ 0 * * * * * * 4126 0 0
+
+A 2 559 * * * * 4859 4850 * * * * * * * * 1987 * * * * 2
+ 72 4369 * 704 1373 * * 4126 1099 0
+
+D 3 * * 1269 1172 * * * * 4333 * * 5313 * * * 3917 * * * * 3
+ 0 * * * * * * 4132 0 0
+
+H 4 * * 4628 * 5884 * 460 * 6081 * * 5034 * 5960 * 4017 3937 * * 5187 4
+ 0 * * * * * * 4132 0 0
+
+S 5 5449 * 5262 4470 * 3621 2463 * 1776 * 5960 4155 4852 6571 4554 2581 5375 * * * 5
+ 265 * 2577 * * * * 4132 0 0
+
+H 6 4264 * 5856 2447 * 3591 1352 * 4562 5790 * * 3684 5924 * * 3085 * * * 6
+ 898 * 1110 * * 270 2549 3953 0 1377
+
+P 7 4217 * * 4444 * * * 2413 * 3467 4981 * 2408 * * 3200 2678 2868 * * 7
+ 0 * * * * * 0 3706 0 2095
+
+A 8 1636 * * 3295 * 2246 * 5019 * 5559 5940 * * * * 4231 4492 2326 * * 8
+ 0 * * * * * 0 3707 0 2095
+
+H 9 * * * 3824 5589 2467 5099 * * * * 4853 2471 5151 * 3448 5195 * * 1571 9
+ 0 * * * * * 0 4251 0 2095
+
+G 10 2597 * 1870 3956 * 5130 5295 5667 * 5160 * * * * * 2595 3197 3054 * * 10
+ 0 * * * * * 0 4264 0 2095
+
+H 11 3968 * * 2157 * * 5130 5582 * * * 5160 6313 6476 * * 1784 * * 1642 11
+ 604 * 1548 * * 2542 272 4264 0 2095
+
+V 12 4367 * * * * * 2822 3783 * 4206 * * * 5227 * * 2179 1684 * 3004 12
+ 0 * * * * 1021 979 4026 0 2623
+
+A 13 1400 * * * * 1918 4888 * 5241 * * * 5791 * 2240 3913 * * * * 13
+ 0 * * * * 0 * 4379 0 1844
+
+G 14 2681 * 3351 3312 * 993 * * * * * * 3443 * * 4297 * * * * 14
+ 0 * * * * * * 4546 0 0
+
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+I 18 6333 6676 * 6366 5463 5860 * 1459 * * * * * * * 4918 4104 4262 5504 1334 18
+ 0 * * * * * * 4562 0 0
+
+T 19 2018 * 4724 4066 * * 4188 * 3188 * * 6143 2677 6209 4822 2931 2923 6849 * * 19
+ 0 * * * * * * 4562 0 0
+
+Q 20 2295 * 6020 1318 * 5782 5344 * * 6602 * 5323 * 4842 * 4906 3585 2737 * * 20
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+Q 21 * * * * * * 889 * * * * * * 1120 * * * * * * 21
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+
+E 22 4220 * 6059 636 * * 6478 * 4387 5515 * 5597 * 4071 4766 4794 4528 6552 * * 22
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+K 23 2610 * 5615 4742 * 4233 6207 * 1856 * * 4568 * 2403 2916 4388 6610 * 6196 * 23
+ 0 * * * * * * 4562 0 0
+
+T 24 5281 * * * * * * * * * * * * 5485 * 5380 108 * * * 24
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+F 25 * * * * 1739 * * * * * * * * * * * * * 4349 618 25
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+G 27 3790 * 5435 * 4921 854 * * * 2683 5199 5925 * 6661 6281 3702 5694 * * * 27
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+W 34 * * * * 5504 * * 2601 4971 * * * * * 2845 * * 3270 1417 2608 34
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+I 39 3607 3884 * * * * * 1974 * 3025 6426 6306 * * * 2789 4143 2016 * * 39
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+A 41 1954 3283 * * 4274 4352 * 3924 * 3581 6059 5947 * * * * 3420 1919 * * 41
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+A 42 4800 * * * 3551 6168 * 2060 * 1953 * * * * * 5425 3480 2237 4582 * 42
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+I 44 3282 * * * * 4936 * 2043 * 1433 * * * * * 5562 5126 2311 * * 44
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+L 48 6145 * * * 3420 * * 1119 * 1980 3839 * * * * * * 3201 * * 48
+ 0 * * * * * * 4429 0 0
+
+A 49 4551 6155 * * 641 * * 3645 * 4200 * * * * * * 4692 2954 * * 49
+ 0 * * * * * * 4004 0 0
+
+N 50 2710 * * * * 3679 * 3796 * 1386 * 2068 * * 5648 * 5820 4704 * * 50
+ 0 * * * * * * 3946 0 0
+
+A 51 2144 * * * * 1613 * 5673 * * * * * * 4340 3275 2007 5282 * * 51
+ 0 * * 0 * * * 3288 0 0
+
+//
+�HHsearch 1.5
+NAME 86ed36c2fe7938800e5622d9b4acb515
+FAM
+FILE 86ed36c2fe7938800e5622d9b4acb515
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:36:43 2013
+LENG 234 match states, 234 columns in multiple alignment
+FILT 112 out of 117 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCEECCCCEEEEEEECCCCCEEEEEEEECCHHHHHHCCCCCEEEEEEECCCEEECC
+CCCCCEEEECCEEECCCCCCCCCCCCCEEEEECCCCEEECCEEEEEECCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEECC
+CCCCCCHHHHHHHHCCCCEEECCCCEEEEEEECC
+>ss_conf PSIPRED confidence values
+9845699596895325416733489999975659957998130453208886899866056786889999966889997536896589999713303125
+7778689978799679763476654545999889720864415998476887875437999999987453368987777312289999899988999886
+6899788887665416975875044799999569
+>Consensus
+xxxxxxxxxxxxlxxxsxxxxxxxxnLkxyYxxxxxxexxNvxxxxxxxxxxlxfxxxxxxxxxxxxlxvxxxxxxxxxkfkxkxVDIFgvxyxxxcxxx
+xxxxxxxxyGGVTkxnxxxxdxxkxixinvxxdgxxxxxxxxxixxxKkxVTlQELDfKlRkxLixxxxLYxxxxxxsxxxxGxIxxxxkdgxxxtxDLx
+xxxxxxxxxxLxxYxdNktIdsxxxhIdVxLxxx
+>86ed36c2fe7938800e5622d9b4acb515
+MSEKSEEINEKDLRKKSELQGTALGNLKQIYYYNEKAKTENKESHDQFRQHTILFKGFFTDHSWYNDLLVRFDSKDIVDKYKGKKVDLYGAYAGYQCAGG
+TPNKTACMYGGVTLHDNNRLTEEKKVPINLWLDGKQNTVPLETVKTNKKNVTVQELDLQARRYLQEKYNLYNSDVFDGKVQRGLIVFHTSTEPSVNYDLF
+GAQGQYSNTLLRIYRDNKTINSENMHIDIYLYTS
+>gi|21282488|ref|NP_645576.1| enterotoxin type C precursor [Staphylococcus aureus subsp. aureus MW2]gi|21203925|dbj|BAB94624.1| ENTEROTOXIN TYPE C PRECURSOR [Staphylococcus aureus subsp. aureus MW2]
+--ESQPDPTPDELHKSSEF-TGTMGNMKYLYD-DHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFs
+SKDnvgkvtGGKTCMYGGITKHEGNHFDNgnl-QNVLIRVYENKRNTISF--EVQTDKKSVTAQELDIKARNFLINKKNLYEFNS--SPYETGYIKFIEN
+NGNTFWYDMMPAPGdkFDQSKYLMMYNDNKTVDSKRVKIEVHlttk----
+>gi|34536505|dbj|BAC87686.1| exotoxin G variant 5 [Streptococcus dysgalactiae subsp. equisimilis]gi|34536507|dbj|BAC87687.1| exotoxin G variant 6 [Streptococcus dysgalactiae subsp. equisimilis]
+---------------------------RFAYD-VTPLEYENVE-ITFVTTNNIH--I---NTGQKKSGCVLYVDSivslGITDNFiKGDKVDVFGLPYNF
+-----SSPNVDNIYGGVVKHSDdK---LQSLQFVGiLNQDGEETSLPSYTILIKHKQFTLQEFDFKIRKFLMETYSIYDS-E--SRYISGSFFLATKDSK
+HYEVDLFNKDDkLlDRNRFFKRYRDNKVFNSEEiSHFDIYLKT-
+>gi|225871304|ref|YP_002747251.1| exotoxin H precursor [Streptococcus equi subsp. equi 4047]gi|8117875|gb|AAF72809.1|AF186180_3 SeeH [Streptococcus equi]gi|225700708|emb|CAW95321.1| exotoxin H precursor [Streptococcus equi subsp. equi 4047]
+------------------YNTTNRHNLESLYKHdSNLIEADSIKnSPDIVTSHMLKYSVKD------KNLSVFFEKDWISQEFKDKEVDIYALSAQEACE
+--CPGKRYEAFGGITLTNSE---KkEIKVPINVWDKSKQHPPMF--ITVNKPKVTAQEVDIKVRKLLIKKYDIYNNRE--QKYSKGTVTLDLNSGKDIVF
+DLYYFGNGDFNSMLKIYSNNERIDSTQFHVDVS----
+>gi|71903885|ref|YP_280688.1| exotoxin type K precursor [Streptococcus pyogenes MGAS6180]gi|94990809|ref|YP_598909.1| exotoxin type C precursor [Streptococcus pyogenes MGAS10270]gi|71802980|gb|AAX72333.1| exotoxin type K precursor [Streptococcus pyogenes MGAS6180]gi|94544317|gb|ABF34365.1| Exotoxin type C precursor [Streptococcus pyogenes MGAS10270]
+--------------------DEILDNrrLKEIYN-KEIIEKNNIS-INAKQGTQLIFNTDEnTTVWndnTFKKVISSNLSPSQERMFnVGDHVNIFAIVk
+sYHVVCK----EQFNYSDGGIIKTSDV-KPEEKAIYINIFGEKELRTlTAKDKITFKNNIVTLQEIDVRLRKSLMgdSKIKLYEY-D--SLYKKGFWDIH
+YKDGGIRHTNLFTYPD---------YTDNETIDMSKvSHFDVHLNE-
+>gi|253730779|ref|ZP_04864944.1| superantigen family protein [Staphylococcus aureus subsp. aureus USA300_TCH959]gi|253725492|gb|EES94221.1| superantigen family protein [Staphylococcus aureus subsp. aureus USA300_TCH959]
+----------------------DKEALYRYYT-GKTMEMKNISALKH-GKNNLRFK----FRGIKI--QVLLPGND-KSKFQQRsyeGLDVFFVQEKR--
+---DKHDIFYTVGGVIQNNKTS-GVVSAPILNISKeKGEDAFVKGYPYYIKKEKITLKELDYKLRKHLIEKYGLYKTIS-----KDGRVKISLKDGSFYN
+LDLRS--------KLKFKYMGEVIESKQiKDIEVNLK--
+>gi|224475929|ref|YP_002633535.1| superantigen-like protein [Staphylococcus carnosus subsp. carnosus TM300]gi|222420536|emb|CAL27350.1| similar to exotoxin [Staphylococcus carnosus subsp. carnosus TM300]
+---------------------NQADELKKYYS-QTPEIFSNKKLT-QVeegSDKGKIYVKI--QSSWGAFINVIGnQSWGNVNKLRGKQVDVFGIKDKPT
+S------QYWWAYteyftGGVTPAANP---SAPVYPIKVTvKKNAHVKSSfdIKAFETRKDKITLKELDFQIRKALINNNNLYSN-----GQNTGTVQIT
+-TKDNQlFTFDLN---KRLENERANVYVDGK----------------
+>gi|22219371|pdb|1M4V|A Chain A, Crystal Structure Of Set3, A Superantigen-Like Protein From Staphylococcus Aureusgi|22219372|pdb|1M4V|B Chain B, Crystal Structure Of Set3, A Superantigen-Like Protein From Staphylococcus Aureus
+--------------------TKDIFDLRDYYS-GASKELKNVTG--YRYSKGgkhyLIFD----KHQKFTRIQIFGKDIERLKTRKNPGLDIFVVKEAE-
+----NRNGTVFSYGGVTKKNQGaYYDYLN--APKFVIkkeVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYKKFP-----KDSKIKVIMKDG
+GYYTFELNKK--------LQPHRMSDVIDGRNiEKMEANI---
+>gi|261263454|gb|ACX55067.1| exotoxin I [Streptococcus dysgalactiae subsp. equisimilis]
+---------------------------------------------GPPFSGSLFYKNIP-YGNSSIELKVELNSVEKANFFSGKRVDIFTLEYSPPC---
+NSNIKKNSYGGITLS-------------------------------------------------------------------------------------
+----------------------------------
+>gi|166409297|dbj|BAG06666.1| enterotoxin T [Staphylococcus aureus]
+------------------------EGLKDFYS-KKIDVYTNKK-INEKDKY----SV-DIEVDNYV-YRINTLDDKILNQFkVGDYVDAWGHIINN----
+----KPigkvIKFYDGdISKHSP--LDKPTNIsyRINLFKEQKQTEVTPEkELEIGNRYLTMKQIDYRIKSYLVKKQQLYTE------FYNGKIEISMLD
+GKKHFIDLS---T--------YYYdpSNFTLDYTKiSHFDIYM---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+S 2 * * * * * * * * * * * * * * * 0 * * * * 2
+ 0 * * * * * * 1000 0 0
+
+E 3 * * 3056 1477 3571 * * 3823 * * * 2433 * * * 2470 * * * * 3
+ 0 * * * * * * 2999 0 0
+
+K 4 2360 3995 * * * * 4200 4198 2416 * * 4436 * * * 2099 3857 3358 * * 4
+ 0 * * * * * * 3201 0 0
+
+S 5 3618 * * 3584 * * * * 4224 * * 2798 * 1621 * 2139 3545 * * * 5
+ 0 * * * * * * 3326 0 0
+
+E 6 3589 * * 2037 4608 3934 * * * 4486 * 3249 2190 4041 * 3618 4168 * * * 6
+ 0 * * * * * * 3326 0 0
+
+E 7 3618 * 1104 2581 * * * * * * * 3228 * 4608 4168 4411 4805 * * * 7
+ 0 * * * * * * 3326 0 0
+
+I 8 * * * 4626 * * * 2049 * * * * 768 * * * 4608 3480 * * 8
+ 69 * 4411 * * * * 3326 0 0
+
+N 9 * * 3671 3529 * * * * 1748 * * 2150 * * 3334 3527 2990 * * * 9
+ 576 1602 * 291 2454 * 0 3273 1534 1026
+
+E 10 * * * 2811 * * * 2181 * 3742 * * 831 * * * * * * * 10
+ 0 * * 0 * 0 * 2893 1013 1534
+
+K 11 * * 2640 1663 * 4307 * * 2396 * * * * * * 1820 * * * * 11
+ 0 * * * * * * 3426 0 0
+
+D 12 * * 1435 2157 * * * * * * * 4890 * 1994 * 3680 4534 * * * 12
+ 0 * * * * * * 3426 0 0
+
+L 13 * * * * * * * * * 0 * * * * * * * * * * 13
+ 0 * * * * * * 3426 0 0
+
+R 14 * 3682 * * * * 1248 * 3679 * * 1982 * 3595 3520 * * * * * 14
+ 0 * * * * * * 3426 0 0
+
+K 15 * * 4026 * * * 3135 * 686 * * 4534 * * 2643 * * * * * 15
+ 575 * 1605 * * * * 3426 0 0
+
+K 16 2904 * * * * * * * 1504 * * * * * * 1390 * 2920 * * 16
+ 0 * * * * * 0 3076 0 1534
+
+S 17 * * * * * * * * * * * 3852 * * * 104 * * * * 17
+ 241 * 2702 * * 0 * 3076 0 1534
+
+E 18 * * 3156 1774 * * * * 1319 * * * * 3220 * 3521 * * * * 18
+ 645 1472 * 1000 1000 0 * 3350 1534 1167
+
+L 19 * * * * 2343 * * * * 958 * * * * * * * 3778 * 2216 19
+ 841 3432 1518 0 * * * 3578 1101 0
+
+Q 20 * * 1601 * * * * * 3504 * * 2020 * 2672 * 3408 3564 * * * 20
+ 1353 717 * 0 * 0 * 3127 1680 1604
+
+G 21 * * 1942 * * 3815 * * 3186 * * * 4691 * * 2695 1867 3451 * * 21
+ 0 * * * * 0 * 4239 0 1534
+
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+ 0 * * 3459 138 * * 5203 1000 0
+
+A 23 2308 * 2628 4851 * * * 5375 4648 4257 * 2223 * 4986 5088 4616 3224 4673 * 5426 23
+ 96 5039 4890 1959 429 * * 5598 1094 0
+
+L 24 4998 * * * 4673 * * 2706 5214 1878 3223 * 4989 * 5434 4813 3036 3135 5809 5246 24
+ 0 * * * * * 0 5587 0 1259
+
+G 25 4433 * 3473 4017 4489 3216 3897 5164 3150 4852 * 3020 * 3036 6908 3652 5877 5726 * 4700 25
+ 0 * * * * * 0 5737 0 1259
+
+N 26 5423 * 2781 2910 * 5226 * 5429 4685 * 5644 1007 5734 6283 * 4530 5890 * * * 26
+ 83 4153 * 1000 1000 0 * 5725 1187 1259
+
+L 27 4378 * * * * * * 3586 * 414 4182 * * * * * * 4652 * 5416 27
+ 0 * * * * * * 5819 0 0
+
+K 28 * * 6246 5061 * * 4310 3808 1447 5493 6337 5221 * * 1835 4971 5117 * 6164 4266 28
+ 0 * * * * * * 5992 0 0
+
+Q 29 4649 6328 2916 3521 3874 4888 4017 * 3251 6104 6466 2861 * 4418 4311 4206 5715 5430 * 3289 29
+ 10 7185 * 1585 585 * * 5992 1000 0
+
+I 30 4132 * 5235 * 3254 * 5853 3155 * 2723 * 6617 * 5672 * 4271 6905 * * 1182 30
+ 66 * 4474 * * * * 5992 0 0
+
+Y 31 * * * * 5335 * * * * * 5521 * * * * * * * * 69 31
+ 0 * * * * * 0 5905 0 1259
+
+Y 32 4103 * 3623 5034 5614 5064 * 5324 3899 * 5041 2735 * * 5521 1969 2332 * * 4988 32
+ 1987 * 419 * * * 0 5905 0 1259
+
+Y 33 * * 3258 * 4766 * 2085 * 2951 * * 3464 * 4500 * 2601 3217 * * 3530 33
+ 838 1454 3725 0 * 172 3154 3261 1484 4279
+
+N 34 * * 4029 6765 * 2432 6320 4352 2575 * * 3840 * 2671 3830 3586 5802 4540 * 3765 34
+ 0 * * * * * 0 5795 0 1916
+
+E 35 4961 * 2892 3037 * * 5255 5802 3096 6619 * 3611 2235 5399 3799 6463 2847 * * * 35
+ 48 4919 * 1115 893 0 * 5795 1959 1916
+
+K 36 6319 * * * 3473 4903 3634 3377 4927 4675 * * 2154 6537 * 2180 3921 4979 * 4025 36
+ 0 * * * * * * 5992 0 0
+
+A 37 5005 6150 5410 3871 2465 6633 * 2718 4265 2989 6001 * * * * * 3670 2397 * 4114 37
+ 0 * * * * * * 5992 0 0
+
+K 38 7055 * 2501 1480 * * * 3519 3929 * * 3729 * 6466 * 3614 3777 3985 * * 38
+ 0 * * * * * * 5992 0 0
+
+T 39 3967 * * 4171 2951 4282 3518 5111 3367 2360 5348 * 6961 * 5693 5695 5455 6123 * 2446 39
+ 0 * * * * * * 5992 0 0
+
+E 40 * * 5843 2376 * * 6683 5257 1811 * * 5184 * 4283 4964 2549 2681 5001 * * 40
+ 0 * * * * * * 5992 0 0
+
+N 41 * * 4631 * * 3998 * 6225 4200 * * 380 6246 * * 4395 * * * * 41
+ 0 * * * * * * 5992 0 0
+
+K 42 * 5196 * 6072 * * * 2227 1980 4470 5943 * * 7471 5808 6806 5400 1422 * * 42
+ 0 * * * * * * 5992 0 0
+
+E 43 * * 5097 3677 * 6254 * 3673 2019 6246 6633 3915 5001 * 4933 2619 2699 5312 4088 * 43
+ 285 5843 2627 0 * * * 5992 1038 0
+
+S 44 4461 * 4726 * * 1603 * 5166 * 3162 * 3818 5412 * * 2293 3136 4802 * * 44
+ 47 * 4977 * * 0 * 5611 0 1740
+
+H 45 * * 4688 4874 6122 5255 6021 2551 3738 4022 * 4175 5811 5185 * 4717 3441 3630 4563 2250 45
+ 191 7089 3101 1000 1000 * 0 5987 1000 1094
+
+D 46 5994 * 1869 3835 * 3890 6499 4120 3430 * * 2754 * * 3560 4992 3525 4695 * 5518 46
+ 13 6775 * 1000 1000 172 3154 5621 1000 1699
+
+Q 47 5934 * * 2893 3620 4819 5610 4479 3297 5294 * 5095 5799 1863 4171 4417 5687 * * 3381 47
+ 544 2668 2675 1449 658 * 0 5943 1752 1033
+
+F 48 * * 5360 6509 2381 6860 5779 4880 2510 2690 * 4504 3919 6551 4224 4487 6543 3278 * 4361 48
+ 58 5686 5647 1585 585 155 3294 5827 1008 1772
+
+R 49 * * 4562 4654 5774 2447 * 4701 3511 1700 * 5294 6998 5885 4415 5357 3066 * * 4590 49
+ 0 * * * * 0 * 5919 0 1116
+
+Q 50 3996 * 2715 4041 4832 3017 * * 3087 * * 3946 5977 4220 7354 2149 3902 * 7619 6650 50
+ 72 6239 4832 2322 322 * * 5997 1010 0
+
+H 51 * * 4594 * 4760 5774 1721 6966 2707 * * 1859 6373 * 6002 6860 3444 * * 4829 51
+ 180 * 3089 * * * 0 5959 0 1144
+
+T 52 * * 1928 6550 5684 2540 5694 * 4924 5949 5714 3831 * 2928 6583 5602 3088 3969 * 4898 52
+ 68 4439 * 1265 776 514 1738 5860 1144 1684
+
+I 53 5690 * * * 4798 * * 3595 4646 929 3824 5222 * * * 5608 4541 2880 * * 53
+ 144 * 3398 * * * 0 5897 0 1236
+
+L 54 * * 6111 3707 7110 * 4453 1458 5120 3228 * 3091 * 6307 4145 * 3885 3967 * 4700 54
+ 121 * 3638 * * * 0 5836 0 1806
+
+F 55 * * * * 989 * 4296 4427 * 7115 4205 5899 * * * * * 3212 * 2234 55
+ 0 * * * * 2092 386 5663 0 2122
+
+K 56 4159 6269 3891 * 7185 5940 * 2868 2897 5095 5975 2647 3869 * 5548 3044 4543 3941 5395 5533 56
+ 929 4175 1254 2500 281 1440 663 5803 1828 1860
+
+G 57 4140 * * 4331 * 4807 * 1522 3994 * * 3304 * * * 5357 2466 2833 * * 57
+ 639 * 1482 * * 2190 357 5078 0 3338
+
+F 58 * * 4505 * 2896 * * 2966 3341 2760 * 3033 * 3342 5191 3484 4059 4328 * * 58
+ 1311 3540 969 1182 839 3758 111 4553 1173 3587
+
+F 59 * * 1153 2603 2995 3516 4129 * 4016 * * * 4217 * * * * * * * 59
+ 523 2505 2966 0 * 3999 93 4278 1187 4286
+
+T 60 * * * * * 2388 * 3727 4679 4584 * 4079 * * * 3157 1055 * * * 60
+ 244 * 2684 * * 318 2338 3912 0 4213
+
+D 61 * * 3023 3853 5662 5669 * 5956 1967 5025 * 3468 3959 2918 5619 4060 5197 5157 * 4535 61
+ 0 * * * * 4038 91 5751 0 1948
+
+H 62 * * 3736 5117 * 3253 2980 4708 5269 4048 * 3595 * 4628 3609 3611 3853 2703 * 5055 62
+ 151 3663 5599 0 * 142 3415 5799 1283 1890
+
+S 63 5303 * 3166 * * 3215 7216 5871 3527 4143 5243 3387 4082 3863 5125 2808 5860 5054 3694 4554 63
+ 97 3941 * 1315 742 * 0 5937 1269 1102
+
+W 64 * * 4233 3496 6042 4273 6066 6816 3210 * 4952 2815 * 2312 * 3752 3817 * 2966 6563 64
+ 13 * 6842 * * 1291 758 5937 0 1102
+
+Y 65 5664 * 5651 * 2937 4905 6272 6045 3120 5119 * 3718 * 4110 * 3705 4970 4324 * 1590 65
+ 0 * * * * 0 * 5950 0 1100
+
+N 66 4707 * 3184 5923 5379 6475 5253 3677 2771 * * 2098 * * 4530 3601 3679 4630 * 3811 66
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+//
+�HHsearch 1.5
+NAME 88117153c423d8f3cd1f072dcda24597
+FAM
+FILE 88117153c423d8f3cd1f072dcda24597
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:00:03 2013
+LENG 123 match states, 123 columns in multiple alignment
+FILT 138 out of 594 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCCHHHHHHHHHHH
+HHHHHHHHCCCCHHHCCCCCCCC
+>ss_conf PSIPRED confidence values
+9899999999885899887999627867678998982632668888438899997028998645688647656899868937889999969999999799
+99999996888887727982469
+>Consensus
+xlxqlxxMixxxxxxxxxxxxyxxYGCxCgxgGxGxPvDxiDxcCxxhxxCyxcxxxxxxCxxxxxxxxxxxYxxxxxxxxixCxxxxxxCxxxlCeCDx
+xxAxclxxxxynxxxxxxxxxxC
+>88117153c423d8f3cd1f072dcda24597
+ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDR
+NAAICFSKVPYNKEHKNLDKKNC
+>gi|321469432|gb|EFX80412.1| putative phospholipase A2 [Daphnia pulex]
+DIFHLYN-MMSCT-tQC-DPLSYKGYGCYCGFLGSGLTVDAIDRCCKKHDFCYGA----TPCRHQS-LIYFVPYKWKCNGGHPYCVTGYgqmkagDICAH
+HLCECDRQFAECIRHYPCPAKKTTCPSN--
+>gi|313239766|emb|CBY14648.1| unnamed protein product [Oikopleura dioica]
+--LQMKIVILFMQK-NKFLGKYCFYGCWCFPrgagnnGGFGQPVDNIDKSCREYSTCYNCIYNqnigSQRCPE----NTADRYQIGgfvdrFGQVQIFCT
+DPWGTCNRSRCECDRDLAMKLRQHepEWNMQYHH------
+>gi|313241201|emb|CBY33484.1| unnamed protein product [Oikopleura dioica]
+---QLMQLMQFYTLdETFDADKYWNYGCNCMIhgdrplsdMGTGPGVDRLDRKCREYKLCQQCARAqhGDMCIGEFIsyrRPRTrtILNDLGVEETHKVC
+RDAPDTCERALCECDLQFAKDHAKVslvAFDPAHHN------
+>gi|313220609|emb|CBY31456.1| unnamed protein product [Oikopleura dioica]gi|313226182|emb|CBY21325.1| unnamed protein product [Oikopleura dioica]
+-LRQFRRLYTFYLVGyRLRPAHLVQYGCWCFPRgqlimGYGQPIDGIDATCRNHQLCLNCVGLdtNYECN-----PHTQPYRVYgqiyQNGRRLMCKDPP
+GSCAWLACQCDVNMVTTSIiESlkGYKPRFWMYDPGRC
+>gi|313232232|emb|CBY09341.1| unnamed protein product [Oikopleura dioica]
+-------------------TKYTSYGCYCWAkgtsniedlg--AGSAnVDWNDKACTDLYRCYACVNIDYGKK-YTELSYDAIFSTDvDGNRKIDCSGAA
+QSDGEHICQCDAAFAERIAFN--------------
+>gi|313234547|emb|CBY10504.1| unnamed protein product [Oikopleura dioica]
+--------------------RMNNYGCHCWPdypqienlSGQGASLDGIDSSCHKLQDCHACLKQeygAEDCD-----PVHTRYKARLIDGEILCLNKss
+gKQACKRNLCECDKKFSSEFSLSfgSWSSEY--------
+>gi|313212373|emb|CBY36361.1| unnamed protein product [Oikopleura dioica]
+------KLVQHFT--SIDIEKLQDYGCA-GRGyfdstepAVGLPVDEIDRSFIWWKKCIKCAQSEYSAYDLEynHFDYREFYEFDF--DSEICGG-SETV
+EHAICQCDKSFAKRLIDLTENNDFHNYDTDSC
+>gi|313232459|emb|CBY24127.1| unnamed protein product [Oikopleura dioica]
+SILQFHLNFEYGF-GAYSAADLLSYGCWCDLEnphRHGKPVDDVDKLCHKHFRCHRCVSMdsSYACS-----PN-VQYELTFDtaTQSHFCAASnTDLCE
+MEACLCDLELITQMVRQ--------------
+>gi|313225706|emb|CBY07180.1| unnamed protein product [Oikopleura dioica]
+-------------------YEFHNYGCYCVApsdtkKMRGRPVDEIDRKLVAkfplvknthfvtpvHFLTTDAIRKQ---W----GFSILIYRYKItkts
+SGNRIECTNAADTCAYASCMCDKGLAEDLGTLlmngvKVNSTYREHDGEK-
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+A 93 4373 * 4864 4825 * 4980 4500 * 3602 4819 4385 5340 * 3302 1381 5110 5951 6122 5542 4334 93
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+
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+
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+
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+
+A 103 622 * * * * 5222 * 4122 * 6444 * 7518 5852 * * 4390 5507 2704 * 6832 103
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+I 104 7061 * 7116 2376 4887 7115 4803 4074 2814 3326 4644 3282 * 4379 4293 4490 4428 4509 * 4728 104
+ 0 * * * * * * 6574 0 0
+
+C 105 5516 1043 3330 4125 * 4893 6996 * 4742 6455 * 4054 * 4603 4530 4643 4854 5232 * * 105
+ 0 * * * * * * 6597 0 0
+
+F 106 6787 7426 * * 1761 * 4797 3472 * 1239 4153 * * 6909 * 7029 * 4485 5403 * 106
+ 0 * * * * * * 6585 0 0
+
+S 107 1627 7085 6060 5155 5096 3529 6319 4066 3688 4937 7138 6186 6444 4692 3486 3798 4622 5213 6647 5823 107
+ 36 5334 * 706 1370 * * 6559 1147 0
+
+K 108 3577 * 2946 3424 * 5586 5461 * 2816 4537 * 4085 7063 3481 2163 4688 4710 * * 6883 108
+ 34 6203 6701 1000 1000 * * 6537 1058 0
+
+V 109 2568 * 6808 4644 5276 6654 3883 4883 5116 4263 5642 2975 * 4370 5904 3047 4698 3377 * 3380 109
+ 1109 898 * 1289 759 0 * 6574 3869 1006
+
+P 110 4414 * 4002 3501 * 5718 5139 5590 3715 5673 5933 6724 2362 5105 5047 2781 2649 4214 * * 110
+ 85 4122 * 924 1081 * * 6483 1341 0
+
+Y 111 * 5850 * 6212 2198 * 6987 5899 6732 6607 6154 * 5936 * * * * 5126 3367 860 111
+ 0 * * * * * * 6483 0 0
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+N 112 5336 * 2710 3978 * 6957 5760 7446 5704 * * 888 3993 6072 5921 4459 6813 5751 * * 112
+ 8 7590 * 0 * * * 6465 1000 0
+
+K 113 4292 5541 4161 3275 6883 6700 6008 5808 2781 3919 5278 3964 2945 6799 4471 3528 4251 3875 6958 5970 113
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+E 114 3177 * 3451 3322 * 4421 5408 * 2065 5239 * 3460 * 4738 3864 3665 3930 6570 * 6590 114
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+H 115 * * * * 2638 * 3142 5984 5672 3495 6240 3176 * 4535 * * * * * 1201 115
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+K 116 4990 * 4935 4445 4058 6616 2302 6874 2960 3683 5082 5347 6059 5156 2876 5333 5449 5659 4322 4289 116
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+N 117 4985 * 3770 4938 3849 3203 3798 5589 7072 3738 4207 2405 6069 4988 5028 3334 6026 5825 * 4126 117
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+L 118 5015 5748 * 5994 2410 5897 4734 3722 * 2797 4713 6247 5602 6052 * * * 3918 6373 1702 118
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+
+D 119 6299 * 1343 * 4891 4895 * * 5374 5875 * 3576 2432 6270 5829 3411 6025 * 4239 5464 119
+ 0 * * 0 * 0 * 6143 1019 1019
+
+K 120 4158 * 5848 4996 * 4457 * 5972 2412 * * 4388 4333 3762 3035 2884 2635 5806 * 4700 120
+ 0 * * * * * * 6030 0 0
+
+K 121 6096 5948 3342 3090 4916 3822 * 5716 2996 4817 * 3170 4714 4321 4803 2802 3457 * * * 121
+ 107 4163 6003 0 * * * 5870 1082 0
+
+N 122 * * * 3693 5383 * * 4398 1848 2712 5621 4803 * * 3013 3221 3703 5262 * 5022 122
+ 268 2560 * 0 * 0 * 5473 1441 1000
+
+C 123 4883 50 * * * * * * * * * * * * * * * * * * 123
+ 0 * * 0 * * * 5348 0 0
+
+//
+�HHsearch 1.5
+NAME 8e30ca516d2b86076f51d1316fab39ad
+FAM
+FILE 8e30ca516d2b86076f51d1316fab39ad
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 15:03:45 2013
+LENG 244 match states, 244 columns in multiple alignment
+FILT 114 out of 1070 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
+HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
+HHCCCCCCCEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9863447775478998364778787677519659999979999999846556686463377444999769899998356899999999999999987886
+2998999999999999999986213678743899999995799947999948998787135998677599999999874239999999999999999998
+53567899589999965643789888993999999999997449
+>Consensus
+xxxxxdxxxxxfxpxGxlxQxeyaxxavxxGxtxigixxxdgvviaxdxxxxxxxxxxxxxxxKixxIxxxixxxxsGxxxDxxxlxxxxxxxxxxxxxx
+xxxxxxxxxlaxxlxxxxxxxxxxxxxrPxxxxxivaGxdxxxxpxLyxidxxGxxxxxxxxaxGxgxxxaxxxLexxxxxxxsxxeaxxlxxxxlxxxx
+xrdxxxxxxixvxiixxxxxxxxgxxxxxxxxxixxxxxxxxxx
+>8e30ca516d2b86076f51d1316fab39ad
+GSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKT
+YNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTT
+DSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGIT
+>gi|291226741|ref|XP_002733349.1| PREDICTED: proteasome beta 9 subunit isoform 1 proprotein-like [Saccoglossus kowalevskii]
+----------R-LKMDKFPV-PFPDitKPVQTGTTIMATEFNDGVVIGGDTRTTSGTIITHKVSDKITEITDSIYCARSGSLADTQALADIIKYYMDMYR
+YYIDTNPMVSVvakQFQSLSYTWRDK--------IQAGLIVAGWDSVNCGQVYSIPMGGACVRQHVTISGSGSSYISGYIDAYYHNQMTKNECMNFTTNA
+ISLAIARDGGSGGVIRLAVITKD----GVERKVILGNHLPCFYDG----
+>gi|195037993|ref|XP_001990445.1| GH19348 [Drosophila grimshawi]gi|193894641|gb|EDV93507.1| GH19348 [Drosophila grimshawi]
+-----------------------------CNGSIIAMHGKDCVAIAV------KGGNINDSNKNLYKLGARLYLGLTGRLADILMAYKHLILRKNIFELE
+KNRELLPKELTLILSQLL--Y----AHRlvPFQIEAVIVGMDPDTlEPHICSLGMIGYPNVtKDFVVAGHRHGPLLGLCKSLWRPSLNPSQLYDTIGQTM
+IQFCTSYISVGCGVDICLIEK---------------------------
+>gi|335282239|ref|XP_003354003.1| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta type-5-like [Sus scrofa]
+---------------------------MLHHTTILAFKILLGVIVAADSWDMAVAYIASQTVKNVIEISLYLLATGAVGAVN----crf---LAQQXXIY
+ELQNKGCISVAAASKLLANMVYQYKGM----GLSMGTMICVWGK----rgpGLYYMDSEGNWIWGVDFSVGSRSVHAY--gfM--GYSYDLE-vERAYDM
+ASQATYXASXSDAYSGGLVNLYHVW-----E--DgWIQSSSDNVAYLH---ykyS--
+>gi|194765170|ref|XP_001964700.1| GF23325 [Drosophila ananassae]gi|190614972|gb|EDV30496.1| GF23325 [Drosophila ananassae]
+----------------------HSTAAITTGSSVIGIRFDKGVMMAADTLVSYGSLaRY-QNMERIFMINNNILFGGCGDFADIQSIIRGIEQKIVeDQC
+NGDDIEMKPKALGQWMTRVL--YDRRTQMNPLLVDVVLGGLDvQ-GKPYLANVDLRGRSHDDFVIATGFARHLTIPFIRSAKPkdRDFNMDEAHEMIKRS
+MQILYYRDTRNNSQYTLGVCSP-----KN-CGIEGPYQVAEN-------
+>gi|341876605|gb|EGT32540.1| hypothetical protein CAEBREN_25994 [Caenorhabditis brenneri]gi|341877137|gb|EGT33072.1| hypothetical protein CAEBREN_23993 [Caenorhabditis brenneri]
+----------------------------MAGMhFLVGISTENYVILAADKATfAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRNLQLYS
+VRNGYEVSPACAHHFVRRSIAEGLRS--QDHYTVDVLIGGYDDKEeKAFLGSVDYLANgLAQQPYLFRGFCGRFCYAIMDREYKKDMSEADGLALMNKCI
+GEAKRRFVANIPGYKVVIIDK-----NG-YRKLD--------------
+>gi|328543397|ref|YP_004303506.1| peptidase, T1 family [Polymorphum gilvum SL003B-26A1]gi|326413142|gb|ADZ70205.1| Peptidase, T1 family [Polymorphum gilvum SL003B-26A1]
+------------------------------MTYCVGLKLDRGLVFAADTRTNAGVDNI-ATFKKLKIWEKPgervFALMSSGNLAITQSVVSILSEQIAs
+hSNKGPtLMSVDTLFQAARVVGSAVrEVRALDGeaLaasAENFYVTFIFGGQIMGEEPRLFQIYSAGNFIEatddTMFFQIGE-HKYGKPILDRVTRHDM
+RLGEAAKMALLSFDSTLRSNLSVGMPIDLLLYNT---------------------------
+>gi|162606210|ref|XP_001713620.1| 26s proteasome SU A6 [Guillardia theta]gi|13794540|gb|AAK39915.1|AF165818_123 26s proteasome SU A6 [Guillardia theta]
+-------NQTLFDSDGKILQLEFALKIPNQGKMIFSFKSINHSYIISEiheKKTNN------KFFNRFYSIDNNIGLGISGIFFDAKKIFNFCVELNIKI
+KQAFKNFCSVEYISKKISEAFSNNTLKINQRPYAINVFIIGFSD-KGPIIFEISTDGLMTYKKTCLSGSSINSYTKELFSIIKndKKMLNDEIFMIsFYQ
+CIKKSEK--NSSNQIFSLSILGK-----KTKFTILN-KIVDRFYTK----
+>gi|114705646|ref|ZP_01438549.1| hypothetical protein FP2506_14309 [Fulvimarina pelagi HTCC2506]gi|114538492|gb|EAU41613.1| hypothetical protein FP2506_14309 [Fulvimarina pelagi HTCC2506]
+-------------------------------TVVLAVVCRDGVVIGSDSQITDKGRDMTYPADKLHPLGELAAWGGSGARSVLADVKRRFDENSAaiLDA
+PDIGRALQEQvlpilrhHYETFIPDVPGE---AGGG-TPAAYVMAAGWRN-GEPWILEITPSGMighYANIGFHAIGSGAPMAQQanSLLSHFHlTKRSL
+RFGCAAVLRVLQ-ALDLTsSSVGGPFNLCRIDA-----EG-AHHLDKDEIEVVSDIV---
+>gi|340788739|ref|YP_004754204.1| 20S proteasome subunits A and B [Collimonas fungivorans Ter331]gi|340554006|gb|AEK63381.1| 20S proteasome, A and B subunits [Collimonas fungivorans Ter331]
+------------HPTGQ---LAYRWRAIM--TTCVVVKKNGQIAIASDSLVTFGdtrLSHAYEVNNKIFQIGE-SYITLAGTAAHFPVMRKLLTAMGEEC
+RLNSRDEVfdTFSKVHTILKDQYFLNTKEDEDDPYESsqiTSLVA--NP-YG--IFGVYSYREVFSfDRFWGIGSGRNFALGAMYAVYDKDVSAQH---I
+AEVGIHAGVEFDKSSAMPLRIHSFEM---------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 0 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+S 2 * * 3477 3350 * 3511 * * * 3484 * * 3431 3352 2560 1864 * * * * 2
+ 0 * * * * * * 3948 0 0
+
+R 3 4213 * 4050 * * 4104 * * 2680 4133 * 3264 * * 3264 2243 2781 * * 4335 3
+ 0 * * * * * * 4969 0 0
+
+R 4 3711 * 3856 3696 * 2203 * * 3492 4758 4701 3116 4577 4839 3234 3937 * 4951 * * 4
+ 0 * * 1585 585 * * 5647 1046 0
+
+Y 5 * 4759 4878 * 3712 * 4113 4823 * * * 4930 * * * 4971 4105 * 4523 753 5
+ 0 * * * * * * 5919 0 0
+
+D 6 4302 * 747 3888 * * * * 4124 * * * * 5164 * 3392 4905 5009 * 4613 6
+ 0 * * * * * * 5998 0 0
+
+S 7 4700 * 4101 * 4068 * * * 4992 2236 * 3170 4971 5406 2559 2679 3590 * * 5348 7
+ 0 * * 0 * * * 6119 1037 0
+
+R 8 4413 * 2720 4037 4496 * 5335 * 5329 5026 * 3430 3363 * 4260 1772 5165 5021 * 5512 8
+ 35 * 5382 3999 93 * * 6276 1154 0
+
+T 9 3620 5035 * * * * * 3151 * 2158 * 5743 2514 4946 5352 5258 3838 3070 * 3543 9
+ 32 * 5489 * * * 0 6499 0 1000
+
+T 10 4370 5333 4900 * * 4041 * * * 4157 * 2568 * * 5319 3848 962 * * * 10
+ 0 * * * * 0 * 6476 0 1110
+
+I 11 5531 * * * 4501 * * 1901 4034 3696 3697 4478 4437 * 5014 4130 2421 3550 * * 11
+ 89 * 4058 * * * * 6752 0 0
+
+F 12 * * * * 666 * * * * * * * * * * * * 3806 4427 1991 12
+ 0 * * * * 0 * 6594 0 1190
+
+S 13 3300 * 3938 4543 * 3398 4807 * * 5078 * 3901 * * 5006 1248 3171 * * * 13
+ 0 * * * * * * 6918 0 0
+
+P 14 5820 * * 5708 * * 5550 * 5078 * * 5429 570 5531 * 3425 4324 4301 * * 14
+ 38 5269 * 0 * * * 6918 1046 0
+
+E 15 5514 * 1591 1626 * 5460 * * 5626 * 5078 5726 * 3871 * 3885 3400 * * * 15
+ 63 4543 * 0 * * * 6918 1124 0
+
+G 16 * * 5109 5916 5009 158 * * * * 5214 * * * * * * * * * 16
+ 0 * * * * * * 6886 0 0
+
+R 17 5916 * 5760 * * * 4770 5009 2281 * * 3922 * 4040 1297 3124 5516 * * 5571 17
+ 80 * 4210 * * * * 6886 0 0
+
+L 18 * * * * 5038 * * 2206 * 1139 4562 5948 * * 5146 * 4250 2648 * * 18
+ 41 * 5146 * * * 0 6743 0 1185
+
+Y 19 * * 4508 4525 2723 4326 4485 5341 4609 2142 * 5796 3670 * 4130 5863 4495 * * 2651 19
+ 35 5393 * 0 * * 0 6790 1000 1335
+
+Q 20 * * * 5482 * * * * * 5604 * * 5175 244 * 5213 * 4106 * * 20
+ 49 * 4903 * * 1519 619 6790 0 1335
+
+V 21 * 5476 * * * 5472 * 2351 5408 1868 * 5470 4878 * * 4412 * 1482 * * 21
+ 0 * * * * 1412 680 6797 0 1354
+
+E 22 4961 * 3175 746 * * 4985 * 4613 5028 * * 4995 5268 * 4424 4746 5895 * * 22
+ 0 * * 2322 322 1004 996 7051 1006 1174
+
+Y 23 * 6018 5662 * 3390 * 5356 5162 * 4604 * 5658 5633 * 3735 5459 * * * 648 23
+ 0 * * 2585 263 0 * 7270 1021 1021
+
+A 24 728 * * * 5278 4063 * 4523 5457 * 5201 * 5229 5598 5101 3569 5830 4681 * * 24
+ 0 * * * * * * 7299 0 0
+
+L 25 4051 * 5697 * 3494 4866 5764 5205 3971 2128 3087 5393 * 3350 4823 3713 4774 4364 5436 * 25
+ 146 4390 4365 1661 548 * * 7860 1305 0
+
+E 26 4299 * 3751 2253 * 4970 * 4799 1885 * 5745 3573 * 3955 3001 5654 6103 * * * 26
+ 0 * * * * * 0 7894 0 1223
+
+S 27 1046 4776 * 5885 5804 5560 * 4704 5597 4997 * 5427 2866 5954 5638 3663 5061 5197 * * 27
+ 58 5721 5597 1843 471 706 1370 7925 1153 1223
+
+I 28 3196 * * 6343 6098 * * 2480 * 4807 4352 5531 4526 5889 * 3210 4594 1548 * 5225 28
+ 19 6287 * 0 * 889 1121 8239 1000 1167
+
+S 29 4747 6087 3460 4000 6534 * * 4593 2711 4242 3571 2509 5312 4676 * 3855 3747 4809 * 4901 29
+ 85 4641 5866 2115 379 0 * 8406 1280 1006
+
+H 30 3620 6143 6370 6379 4372 6333 4468 5309 2927 3910 6239 2379 * 3930 3451 4361 2962 * * 6412 30
+ 0 * * * * * 0 8480 0 1032
+
+A 31 3703 * * 5991 * 618 * * * * 4610 6236 * 6547 6592 2689 6347 6247 * * 31
+ 24 5914 * 2361 312 0 * 8663 1099 1032
+
+G 32 5965 6725 5378 6570 6453 2301 5586 * 5085 4994 6481 3645 5118 * 4907 2765 1648 5352 * * 32
+ 60 4626 * 0 * * * 8833 1350 0
+
+T 33 3822 6888 * * 4672 * 6311 4626 * 3381 6226 5420 3841 * * 2540 1422 4135 * 5381 33
+ 0 * * * * * * 8909 0 0
+
+A 34 3158 3405 * * * * * 2150 * 3123 5640 * 6507 * * 3588 3165 2176 * 7288 34
+ 0 * * * * * * 8909 0 0
+
+I 35 4421 * * * 4914 * * 1583 * 2373 5184 * 6507 * * * * 1495 * * 35
+ 12 * 6888 * * * * 8909 0 0
+
+G 36 1409 6712 * * 6254 1068 * * * * * * * * * 4911 5103 4021 * * 36
+ 0 * * 0 * 0 * 8903 1000 1000
+
+I 37 3689 * * * 4048 * * 1534 * 2212 3982 * * * * 6283 6678 2283 * 6727 37
+ 0 * * * * * * 8929 0 0
+
+M 38 3923 5771 * 4676 * * 6549 4612 1635 4540 5810 * * 3661 2736 4036 4118 3403 * * 38
+ 9 7262 * 4392 70 * * 8929 1000 0
+
+A 39 4220 3331 6283 * 3441 2290 5711 6845 5022 4874 * 4428 * * 6901 3189 3277 5217 6768 2824 39
+ 0 * * * * * * 8929 0 0
+
+S 40 4331 * 3219 3950 * 4407 5485 6276 1860 * * 2577 5778 5933 3420 3429 5503 6657 * * 40
+ 0 * * * * * * 8953 0 0
+
+D 41 5517 * 1138 4098 * 3285 5192 * 3630 * * 3223 6835 5805 5950 4054 4489 * * * 41
+ 50 6406 5499 0 * * * 8953 1027 0
+
+G 42 5571 3861 * 6763 3037 875 5037 * 5291 6891 * 6880 * 6303 6875 4359 5808 5733 * 4197 42
+ 0 * * * * 0 * 8906 0 1154
+
+I 43 3011 5683 * * 6526 6555 * 1961 * 3696 6560 * * * * 5082 5607 1184 * * 43
+ 16 * 6525 * * * * 8953 0 0
+
+V 44 3677 5049 * * 6786 * * 1980 * 2739 4822 * * * 6518 * 6445 1360 * 4965 44
+ 0 * * * * 0 * 8934 0 1029
+
+L 45 5841 * * * 3157 * * 1752 * 1566 3598 * * * * * * 2706 * * 45
+ 34 5440 * 2416 299 * * 8953 1158 0
+
+A 46 915 5134 * * 5607 2830 * 4033 * 4215 5841 6332 * * * 5520 6345 3305 * * 46
+ 27 * 5757 * * * * 8953 0 0
+
+A 47 1894 4112 6504 * 6765 3161 * 4855 6407 5267 * * * 6546 * 2267 2914 3397 * 5455 47
+ 83 6504 4469 572 1612 799 1234 8902 1157 1126
+
+E 48 5960 * 891 2479 6440 * 4604 * 5526 4720 5746 5475 5928 4442 6737 5786 * 6957 * 6149 48
+ 36 6194 6550 792 1243 636 1487 8827 1317 1548
+
+R 49 * 6850 6525 6281 * 3948 * 4573 2264 3944 6081 4067 6765 6772 3557 2512 2199 5887 * * 49
+ 43 6759 5637 5170 41 * 0 8895 1004 1282
+
+K 50 4308 6643 5431 5778 5378 6492 6207 5621 2694 4262 6519 5008 4490 3075 1873 3974 4042 5640 * * 50
+ 10 7234 * 1000 1000 * 0 8875 1000 1534
+
+V 51 2948 5699 * 6127 4974 5829 5663 2924 4537 3075 5576 5588 5698 4691 5551 3910 2855 2753 * * 51
+ 102 5123 4661 470 1846 2624 255 8875 1221 1534
+
+T 52 4322 5788 * 4841 5601 4197 4377 4689 * 5738 * 3212 4194 5640 6631 2216 1981 4514 * 6486 52
+ 168 3480 5613 1916 444 * 0 8794 1974 1909
+
+S 53 4204 6012 4590 4396 5402 3665 5086 * 5577 4536 4227 3052 4806 4203 4479 2445 4048 * * 3437 53
+ 58 5339 6103 277 2518 2303 327 8771 1292 2133
+
+T 54 * * 4606 4081 7001 1472 * 6697 2691 5839 * 4060 3623 5025 6491 2936 5416 * * 6316 54
+ 78 4925 5679 2451 291 * 0 8767 1387 2040
+
+L 55 3637 * * 5006 4643 4287 6610 3436 6428 1881 3745 4077 * 6805 6496 3414 4616 3543 * 4748 55
+ 58 5336 6111 0 * 1843 472 8703 1347 2314
+
+L 56 4005 * 4844 5749 4656 5617 * 2964 * 2547 3839 5337 5586 4764 4726 3193 4270 4291 * 3026 56
+ 218 3892 3778 2100 383 2974 196 8741 1701 2080
+
+E 57 5657 * 3376 3248 4436 5053 6110 2208 3587 5078 * 3757 5891 6402 3952 4016 5105 3545 * 6087 57
+ 126 5276 4118 0 * 2551 270 8665 1232 2767
+
+Q 58 3224 * 4377 4794 4594 6821 6527 4734 4705 3739 4210 4625 3560 5278 5500 3061 3433 3272 * 4215 58
+ 1144 5488 929 1330 732 * 0 8606 1134 2997
+
+D 59 4609 5557 3101 * * * 4374 * 2286 5420 5310 3184 * 5339 4399 2229 3787 * * 4279 59
+ 72 4370 * 1539 608 209 2889 7296 1201 6538
+
+T 60 5212 5612 3261 3471 6754 4782 5988 6290 2780 * * 4081 4630 4103 2914 2784 4209 6469 * 4739 60
+ 49 * 4901 0 * 519 1728 8815 1150 1987
+
+S 61 4454 * 2869 4235 5470 5935 5087 5976 5214 5052 6361 2266 4040 6528 5461 2544 4340 4003 * 5293 61
+ 0 * * 2661 248 1288 760 8830 1185 1627
+
+T 62 3533 4438 5568 4233 3301 4185 5841 4774 * 4859 5039 3739 7262 3292 * 4307 4934 2446 * 3887 62
+ 12 * 6968 * * 595 1566 8869 0 1323
+
+E 63 * 6930 2933 2865 * * 5257 * 3171 6409 6723 2982 3804 3654 4231 2969 3920 5937 6506 6245 63
+ 0 * * 0 * 0 * 8926 1000 1116
+
+K 64 * * 6301 5306 5924 * 5015 * 715 5604 6449 4838 * * 2418 5023 5605 * * * 64
+ 0 * * * * * * 8954 0 0
+
+L 65 * 5636 * 6672 3763 * 5897 1171 6826 2649 4933 * * 6685 * * 5079 2357 * * 65
+ 0 * * * * * * 8954 0 0
+
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+T 200 3021 5403 * 5401 5473 6683 5069 3373 4216 2893 3884 4328 * 3989 3728 4582 3991 3597 * 4669 200
+ 44 6664 5639 3273 158 1194 829 8865 1133 1388
+
+D 201 4157 5584 2630 2787 4748 3470 6752 * 2915 5786 * 3935 4491 5018 3397 5635 5569 6346 * 4642 201
+ 289 6359 2564 0 * 1039 962 8847 1027 1437
+
+S 202 5115 6624 3607 3570 6069 6172 6325 4534 5259 5335 * 3640 5034 * 1261 3589 5469 5287 * * 202
+ 164 4787 3807 1159 857 488 1801 8656 1296 3191
+
+S 203 4792 6543 1191 4510 4105 4395 * * 5406 4075 * 3457 * 4549 5919 4616 4762 5624 * 4854 203
+ 57 5389 6045 1322 737 470 1846 8727 1275 2366
+
+A 204 2877 4635 3307 3843 * 4363 * 3334 3479 4429 6770 3730 5022 8564 5009 4105 4310 3165 * * 204
+ 17 * 6457 * * 1052 949 8829 0 1465
+
+L 205 4103 5565 3642 5426 3707 3586 * 4423 5747 3232 4809 5019 6908 * 5115 2913 3769 3471 * 3543 205
+ 13 6833 * 2000 415 1512 623 8824 1000 1347
+
+T 206 3231 6840 4666 5516 6479 3833 * 5300 3452 * 6365 3960 5066 5421 * 2024 2891 3117 * * 206
+ 15 6620 * 0 * 0 * 8838 1000 1181
+
+Y 207 3488 5109 4701 3848 5675 1723 6676 4557 5541 4741 * 4053 3916 5054 6124 3945 3975 6255 * 5173 207
+ 12 6951 * 0 * * * 8883 1021 0
+
+D 208 6563 4725 3752 3616 3988 2724 5024 6640 3808 * 6299 3659 3634 5502 5073 2981 4688 4900 5782 5160 208
+ 19 * 6273 * * 0 * 8876 0 1021
+
+R 209 5713 5971 4049 3315 5039 3409 5182 4635 4680 5626 6688 2592 3312 4321 4801 4440 4794 3895 * 4605 209
+ 44 5058 * 1473 644 * 0 8854 1241 1023
+
+L 210 5153 * * * 2512 * * 1806 * 2788 4515 6669 * * * 6757 5724 2365 5495 3883 210
+ 28 5685 * 2585 263 0 * 8854 1109 1023
+
+E 211 * 6933 2634 1945 5415 * 4825 4328 4012 6695 5657 4618 * 3415 3366 4077 4087 6738 * 6359 211
+ 17 * 6386 * * * * 8883 0 0
+
+F 212 6703 * * * 4480 * * 1788 * 2286 3705 * * * * * 6537 1509 * 6340 212
+ 14 * 6725 0 * 0 * 8846 1016 1016
+
+A 213 2555 3099 6174 4830 4169 2587 6291 6519 3812 3699 6759 5957 * * 6923 4058 4166 4700 5003 4284 213
+ 18 * 6367 0 * 0 * 8864 1000 1000
+
+T 214 * 6633 * 5236 5397 * 5605 1823 4071 3357 8613 * * * 4911 6261 3508 2166 3920 4218 214
+ 20 6213 * 1036 964 0 * 8846 1181 1016
+
+I 215 4309 5100 * * 4689 * * 1833 * 2331 6900 * * * * * 4733 1739 * 4146 215
+ 74 5120 5577 0 * 0 * 8829 1253 1033
+
+R 216 4480 6444 2551 4098 6162 3206 6717 * 3969 5580 * 5663 6913 * 3564 3101 2131 * * 4620 216
+ 464 6631 1917 0 * 0 * 8823 1000 1136
+
+K 217 3531 * 4666 4086 4876 6438 6563 6251 1802 3734 4844 4231 4425 5208 3105 4712 6101 4229 * * 217
+ 1001 5869 1049 3000 193 * 0 8448 1000 3722
+
+G 218 3378 * 1675 1863 * 3842 * * 4680 4922 4518 * * 4564 * 4798 4260 * * * 218
+ 1549 * 603 * * * 0 6539 0 5463
+
+A 219 2893 * 1751 * * 2885 * * 2795 * * * * * 2682 * 2909 * * * 219
+ 514 * 1738 * * * 0 3706 0 6352
+
+N 220 * * 2357 2377 * 2370 * * * * * 2304 * 2208 * * * * * * 220
+ 0 * * * * 5655 29 2949 0 6489
+
+D 221 2423 * 1641 * * * * * * * * 2567 1626 * * * * * * * 221
+ 252 2643 * 4087 87 637 1486 3322 1000 6422
+
+G 222 3352 * * 3407 5300 3434 * * 2283 * * 3510 4482 5731 5577 3404 2516 5448 * 5652 222
+ 122 4459 4809 0 * 305 2392 7514 1159 3462
+
+E 223 4935 * 2650 2993 * 2794 * 6422 3618 * * 2175 5568 2870 5894 5084 * 5682 * * 223
+ 117 6260 3940 523 1718 1007 993 8145 1143 1671
+
+V 224 * * * 3645 * 946 * 5670 3698 * * 4936 3963 4836 4553 6033 4790 4021 * 5892 224
+ 851 * 1166 1810 484 673 1424 8123 1163 1938
+
+Y 225 5226 * 3585 3323 * 3401 5071 4294 2617 4224 5420 5032 3741 5010 3657 * 3648 4221 * 5285 225
+ 0 * * * * 65 4512 7346 0 4005
+
+Q 226 3750 5052 * * 1667 * 4322 3660 * 3413 * * * 6052 5017 5245 4125 2846 4078 5072 226
+ 65 5102 6045 635 1489 * 0 8168 1140 1033
+
+K 227 * 4956 4513 3209 6250 * 3196 5929 1826 5012 6128 5917 * 5042 2255 6064 4386 5027 * * 227
+ 0 * * * * 1055 947 8149 0 1185
+
+I 228 * 6242 6096 6152 4008 * 3663 1931 2779 3526 * * * 4655 3764 * 4619 3221 * 4033 228
+ 26 5795 * 0 * * 0 8168 1023 1033
+
+F 229 6258 * 6187 3517 3001 4407 6338 3440 6173 1523 4925 4941 * * * * * 3178 5939 4180 229
+ 68 4444 * 2220 349 * 0 8168 1246 1033
+
+K 230 4149 * 3199 3610 5888 3691 * * 4485 5896 * 3311 2356 6047 5226 2874 3224 5986 * * 230
+ 32 * 5507 * * 0 * 8086 0 1033
+
+P 231 4319 * 4296 2679 4369 3830 5190 6002 3073 5018 5660 3952 2611 5866 6039 3787 4375 5931 * 6160 231
+ 0 * * * * 0 * 7982 0 1033
+
+Q 232 4218 * 2901 2053 6133 4998 4984 6000 3042 5954 6080 3293 5675 4968 * 4208 6166 6084 * 3475 232
+ 55 * 4740 * * * * 8044 0 0
+
+E 233 5512 * 3169 1317 5964 * 5778 3686 4080 4202 * 5893 * 5377 3883 5920 4941 4023 5591 * 233
+ 27 5769 * 4459 67 * 0 7921 1021 1154
+
+I 234 * * * 4782 4241 * * 1486 * 3258 * 5973 * * 4322 5574 5948 1531 * * 234
+ 0 * * 1000 1000 0 * 7848 1154 1154
+
+K 235 4219 * 2556 2215 5842 4076 5800 4913 3257 6212 * 3875 4270 4701 4093 3354 * * * * 235
+ 56 5604 5823 1585 585 * * 7938 1021 0
+
+D 236 3352 4605 3110 2142 5799 5812 * 4611 3709 5854 5415 4130 3673 3987 5269 5646 4601 4681 * * 236
+ 0 * * 0 * 0 * 7603 1021 1021
+
+I 237 5052 5489 * * 2331 * 5778 2604 * 2148 5634 4222 * * * * * 2520 * 3436 237
+ 0 * * * * * * 7344 0 0
+
+L 238 5312 * * * 3003 * 4416 2846 5432 1469 * * * * 4390 3425 * 5091 5062 3649 238
+ 0 * * * * * * 7192 0 0
+
+V 239 4140 * 2708 2203 * 3554 * * 3588 5109 * * * 4124 3987 3549 3999 4266 * 4173 239
+ 0 * * * * * * 7032 0 0
+
+K 240 5079 * 5117 5142 * 4044 * 4184 2606 * 5186 3906 * 4085 3687 2768 3054 2884 * * 240
+ 0 * * * * * * 6958 0 0
+
+T 241 3402 * * * 5105 * * 1949 * 3185 4788 * * * 4825 4903 3855 2168 * 3175 241
+ 0 * * * * * * 6481 0 0
+
+G 242 1807 * 3784 1937 * 2633 * * 2773 * * * 3779 * * * * * * * 242
+ 391 2073 * 1000 1000 * * 4701 1013 0
+
+I 243 * * * * 2049 * * 1958 1988 * * * * * * * * 2006 * * 243
+ 0 * * * * * * 2507 0 0
+
+T 244 * * * * * * * * * * * * * * * * 0 * * * 244
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 8fd273e25da1bf193a2bf90e2bc9fef0
+FAM
+FILE 8fd273e25da1bf193a2bf90e2bc9fef0
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:12:17 2013
+LENG 63 match states, 63 columns in multiple alignment
+FILT 7 out of 9 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEECCC
+>ss_conf PSIPRED confidence values
+938999999807947878860307888799999999878657806999617926999996679
+>Consensus
+evtikanlifaxgxtqtaefkgtfeeataeayxyadxlxkxngextxdxxdxgxtlnikfagk
+>8fd273e25da1bf193a2bf90e2bc9fef0
+EVTIKVNLIFADGKIQTAEFKGTFEEATAEAYRYAALLAKVNGEWTADLEDGGNHMNIKFAGK
+>gi|159164775|pdb|2PTL|A Chain A, Three-Dimensional Solution Structure Of An Immunoglobulin Light Chain-Binding Domain Of Protein L. Comparison With The Igg-Binding Domains Of Protein G
+EVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEYTVDVADKGYTLNIKFAG-
+>gi|261824459|pdb|2KAC|A Chain A, Nmr Solution Structure Of Kx6e Protl Mutant
+EVTIKANLIFANGSTQTAEFEGTFEEATSEAYAYADTLEEDNGEWTVDVADEGYTLNIEFAG-
+>gi|150674|gb|AAA67503.1| protein L [Finegoldia magna]gi|745058|prf||2015385A protein L
+EVTIKVNLIFADGKIQTAEFKGTFEEATAKAYAYANLLAKENGEYTADLEDGGNTINIKFAGK
+>gi|322065|pir||A45063 immunoglobulin-binding protein LG - Peptostreptococcus magnusgi|261706|gb|AAA03280.1| protein LG [Finegoldia magna]
+EVTIKANLIYADGKTQTAEFKGTFAEATAEAYRYADLLAKENGKYTADLEDGGYTINIRFAGK
+>gi|297588180|ref|ZP_06946824.1| probable protein L precursor [Finegoldia magna ATCC 53516]gi|297574869|gb|EFH93589.1| probable protein L precursor [Finegoldia magna ATCC 53516]
+EVTIKANLIYADGKTQTAEFKGTFEEATAEAYRYADLLAKENGKYTVDVADKGYTLNIKFAGK
+>gi|18655716|pdb|1KH0|A Chain A, Accurate Computer Base Design Of A New Backbone Conformation In The Second Turn Of Protein Lgi|18655717|pdb|1KH0|B Chain B, Accurate Computer Base Design Of A New Backbone Conformation In The Second Turn Of Protein L
+EVTIKANLIFANGSTQTAEFKGTKEKALSEVLAYADTLKKDNGEWTIDkrVTNGVIILNIKFAG-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+E 1 * * * 0 * * * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1417 0 0
+
+V 2 * * * * * * * * * * * * * * * * * 0 * * 2
+ 0 * * * * * * 1417 0 0
+
+T 3 * * * * * * * * * * * * * * * * 0 * * * 3
+ 0 * * * * * * 1417 0 0
+
+I 4 * * * * * * * 0 * * * * * * * * * * * * 4
+ 0 * * * * * * 1417 0 0
+
+K 5 * * * * * * * * 0 * * * * * * * * * * * 5
+ 0 * * * * * * 1417 0 0
+
+V 6 476 * * * * * * * * * * * * * * * * 1831 * * 6
+ 0 * * * * * * 1417 0 0
+
+N 7 * * * * * * * * * * * 0 * * * * * * * * 7
+ 0 * * * * * * 1417 0 0
+
+L 8 * * * * * * * * * 0 * * * * * * * * * * 8
+ 0 * * * * * * 1417 0 0
+
+I 9 * * * * * * * 0 * * * * * * * * * * * * 9
+ 0 * * * * * * 1417 0 0
+
+F 10 * * * * 440 * * * * * * * * * * * * * * 1928 10
+ 0 * * * * * * 1417 0 0
+
+A 11 0 * * * * * * * * * * * * * * * * * * * 11
+ 0 * * * * * * 1417 0 0
+
+D 12 * * 879 * * * * * * * * 1133 * * * * * * * * 12
+ 0 * * * * * * 1417 0 0
+
+G 13 * * * * * 0 * * * * * * * * * * * * * * 13
+ 0 * * * * * * 1417 0 0
+
+K 14 * * * * * * * * 879 * * * * * * 1133 * * * * 14
+ 0 * * * * * * 1417 0 0
+
+I 15 * * * * * * * 1831 * * * * * * * * 476 * * * 15
+ 0 * * * * * * 1417 0 0
+
+Q 16 * * * * * * * * * * * * * 0 * * * * * * 16
+ 0 * * * * * * 1417 0 0
+
+T 17 * * * * * * * * * * * * * * * * 0 * * * 17
+ 0 * * * * * * 1417 0 0
+
+A 18 0 * * * * * * * * * * * * * * * * * * * 18
+ 0 * * * * * * 1417 0 0
+
+E 19 * * * 0 * * * * * * * * * * * * * * * * 19
+ 0 * * * * * * 1417 0 0
+
+F 20 * * * * 0 * * * * * * * * * * * * * * * 20
+ 0 * * * * * * 1417 0 0
+
+K 21 * * * 2757 * * * * 231 * * * * * * * * * * * 21
+ 0 * * * * * * 1417 0 0
+
+G 22 * * * * * 0 * * * * * * * * * * * * * * 22
+ 0 * * * * * * 1417 0 0
+
+T 23 * * * * * * * * * * * * * * * * 0 * * * 23
+ 0 * * * * * * 1417 0 0
+
+F 24 * * * * 289 * * * 2461 * * * * * * * * * * * 24
+ 0 * * * * * * 1417 0 0
+
+E 25 2865 * * 213 * * * * * * * * * * * * * * * * 25
+ 0 * * * * * * 1417 0 0
+
+E 26 * * * 532 * * * * 1698 * * * * * * * * * * * 26
+ 0 * * * * * * 1417 0 0
+
+A 27 0 * * * * * * * * * * * * * * * * * * * 27
+ 0 * * * * * * 1417 0 0
+
+T 28 * * * * * * * * * 2461 * * * * * * 289 * * * 28
+ 0 * * * * * * 1417 0 0
+
+A 29 879 * * * * * * * * * * * * * * 1133 * * * * 29
+ 0 * * * * * * 1417 0 0
+
+E 30 * * * 214 * * * * 2858 * * * * * * * * * * * 30
+ 0 * * * * * * 1417 0 0
+
+A 31 289 * * * * * * * * * * * * * * * * 2461 * * 31
+ 0 * * * * * * 1417 0 0
+
+Y 32 * * * * * * * * * 2461 * * * * * * * * * 289 32
+ 0 * * * * * * 1417 0 0
+
+R 33 751 * * * * * * * * * * * * * 1300 * * * * * 33
+ 0 * * * * * * 1417 0 0
+
+Y 34 * * * * * * * * * * * * * * * * * * * 0 34
+ 0 * * * * * * 1417 0 0
+
+A 35 0 * * * * * * * * * * * * * * * * * * * 35
+ 0 * * * * * * 1417 0 0
+
+A 36 2805 * 476 * * * * * * * * 2858 * * * * * * * * 36
+ 0 * * * * * * 1417 0 0
+
+L 37 * * * * * * * * * 879 * * * * * * 1133 * * * 37
+ 0 * * * * * * 1417 0 0
+
+L 38 * * * * * * * * * 0 * * * * * * * * * * 38
+ 0 * * * * * * 1417 0 0
+
+A 39 879 * * 2757 * * * * 1698 * * * * * * * * * * * 39
+ 0 * * * * * * 1417 0 0
+
+K 40 * * * 2757 * * * * 231 * * * * * * * * * * * 40
+ 0 * * * * * * 1417 0 0
+
+V 41 * * 1133 1319 * * * * * * * * * * * * * 2805 * * 41
+ 0 * * * * * * 1417 0 0
+
+N 42 * * * * * * * * * * * 0 * * * * * * * * 42
+ 0 * * * * * * 1417 0 0
+
+G 43 * * * * * 0 * * * * * * * * * * * * * * 43
+ 0 * * * * * * 1417 0 0
+
+E 44 * * * 440 * * * * 1928 * * * * * * * * * * * 44
+ 0 * * * * * * 1417 0 0
+
+W 45 * * * * * * * * * * * * * * * * * * 1081 923 45
+ 0 * * * * * * 1417 0 0
+
+T 46 * * * * * * * * * * * * * * * * 0 * * * 46
+ 0 * * * * * * 1417 0 0
+
+A 47 1257 * * * * * * 2461 * * * * * * * * * 1322 * * 47
+ 0 * * * * * * 1417 0 0
+
+D 48 * * 0 * * * * * * * * * * * * * * * * * 48
+ 289 2461 * 1000 1000 * * 1417 1016 0
+
+L 49 * * * * * * * * * 1257 * * * * * * * 782 * * 49
+ 0 * * * * * * 1417 0 0
+
+E 50 1322 * * 1257 * * * * * * * * * * * * 2461 * * * 50
+ 0 * * * * * * 1417 0 0
+
+D 51 * * 289 * * * * * * * * 2461 * * * * * * * * 51
+ 0 * * * * * * 1417 0 0
+
+G 52 * * * 2757 * 737 * * 1988 * * * * * * * * * * * 52
+ 0 * * * * * * 1417 0 0
+
+G 53 * * * * * 289 * * * * * * * * * * * 2461 * * 53
+ 0 * * * * * * 1417 0 0
+
+N 54 * * * * * * * 2461 * * * 1831 * * * * * * * 896 54
+ 0 * * * * * * 1417 0 0
+
+H 55 * * * * * * 2805 2461 * * * * * * * * 567 * * * 55
+ 0 * * * * * * 1417 0 0
+
+M 56 * * * * * * * 1861 * 782 2805 * * * * * * * * * 56
+ 0 * * * * * * 1417 0 0
+
+N 57 * * * * * * * * * * * 0 * * * * * * * * 57
+ 0 * * * * * * 1417 0 0
+
+I 58 * * * * * * * 0 * * * * * * * * * * * * 58
+ 0 * * * * * * 1417 0 0
+
+K 59 * * * 2757 * * * * 484 * * * * * 2865 * * * * * 59
+ 0 * * * * * * 1417 0 0
+
+F 60 * * * * 0 * * * * * * * * * * * * * * * 60
+ 0 * * * * * * 1417 0 0
+
+A 61 0 * * * * * * * * * * * * * * * * * * * 61
+ 0 * * * * * * 1417 0 0
+
+G 62 * * * * * 0 * * * * * * * * * * * * * * 62
+ 0 * * * * * * 1417 0 0
+
+K 63 * * * * * * * * 0 * * * * * * * * * * * 63
+ 0 * * 0 * * * 1205 0 0
+
+//
+�HHsearch 1.5
+NAME 91ee985382113129d3975a1aa1210405
+FAM
+FILE 91ee985382113129d3975a1aa1210405
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:16:49 2013
+LENG 211 match states, 211 columns in multiple alignment
+FILT 130 out of 1316 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEECCCCEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEECCCCEEEEEEECCCHHHCEEEEEEEEECCCCEEEE
+EEEEEEEEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCHHHCCEEEEEEECCC
+CCCCEEEEEEC
+>ss_conf PSIPRED confidence values
+9499965983899789989999997478997799999589987279997046447676762687426870589991343111849999998178731410
+2899999730044589718850662397099999971688986189999899784577520111476289848888999983488776928999999089
+88338999709
+>Consensus
+xxxvxxxxxxxxxxxGxxvxLxCxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLxIxxxxxxDxgxYxCxvxxxxxxxxxx
+xxxlxvxxxxxxpxvxxxxxxxxxxxgxxxxlxCxxxxxxpxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxxdxgxyxCxvxxxx
+xxxxxxxxxxx
+>91ee985382113129d3975a1aa1210405
+DIKMTQSPSSMYASLGERVTITCKASQDINSYLNWFQQKPGKSPKTLIYRTNRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGS
+GTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG
+LSSPVTKSFNR
+>gi|281349765|gb|EFB25349.1| hypothetical protein PANDA_021873 [Ailuropoda melanoleuca]
+--SVSQMKNQVTLSERAFLIVNHSFAANKsappfsgvFSVLVKLCSCPENH----KRKCDGSNKG----FEATnEEKTTFPWEKLSVPMADMAVCHCA--
+----------------------------------------------------------------------------------------------------
+--------------------
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+----------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAAQN-----------------tqr
+kweaagvaeqw----RAYLEGECLEWLRRYLEKGK------------------et--LQ----
+>gi|62464905|gb|AAX83161.1| immunoglobulin heavy chain variable region [Aotus nancymaae]
+---------------GDPVPHLRCLWLLhRQ------willeldpPAPKGRG--WSGldisivwWVHql-qrlpQES-----sh---YFsrHVQEPVLVE
+---------A------------------------------------------------------------------------------------------
+-------------------------------------
+>gi|301609249|ref|XP_002934188.1| PREDICTED: vascular cell adhesion protein 1-like [Xenopus (Silurana) tropicalis]
+NTRLTITPS-ELVRQGDRVIIQCMSEAFPAPTLILKRKTERGQVELE--------------------TTSGEYIITSVTVKHSGTYTCESVNpvgnevae
+lhvtvqvppqnttvlvkpsknvtegdtvtitcethsttlptillkkvcagnstvqqaengtftlhnvtrndtgtyvlsiiNEAGNTTEVIEinvqvppkn
+trltitpselvregdhviphavppqnttvlvkpskn--------------------VTEGDTVTITCETHSTTHPTILLKKVCAGNSTVQQA--------
+-ENGTF------TLHNVTRNDTGTYMVSIINEAGNT--------
+>gi|26367762|dbj|BAB26738.2| unnamed protein product [Mus musculus]
+---FITPIFDFRIPENSSAVFKCSVIGIPPPEVRWYKEYMCIEPDD-------------TKYVISEEKGSHSLRIQDVGPSDCATYRCRALNSAGEAICR
+GfltmgdsqvsavatrtSKVTLSSQkeelvlrsryadsffefqvvDGPPRFIKGISDCHAPLGTAAYFQCLVRGSPRP--TVSWYKDGKLVQGSRFSAEE
+SGIGFHNLF-------ITGLVKGDEGEYSCVATNNS-----------
+>gi|209732526|gb|ACI67132.1| Butyrophilin subfamily 1 member A1 precursor [Salmo salar]
+-FEVLGPTDPIVAVAGDDIILPCYLKPNISAedmTVDWLNLDFKDSrvyryqnHRIIRDYQIPYYRGRTSLFEEELWRGNTSLKLTRVQGTDEGRYKCFI
+KAK-SWYDDFTIQVLVKAVGSKPVVS-----IEGHREGGMGLLCESEGWHPEP-ELAWLDSKGVHLSAG--PPETHRDFKGFYRVKQHVIVQETD---TN
+RFTCRVQQSRINEKMETEV--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+D 1 * * 1804 3068 * * * * 4186 * * 4067 3894 2506 * 2532 * * * 3976 1
+ 0 * * * * * * 6548 0 0
+
+I 2 3569 * 5145 * 3407 * 5215 2961 * 2010 5567 * 5438 4426 4847 4244 5150 2447 * * 2
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+Y 173 4439 6688 * 4340 2555 6638 4798 4147 * 4102 * 4282 6551 4014 4729 3866 5491 4156 6134 2052 173
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+C 194 7044 160 6649 * 6635 7128 * * * 5228 6774 * * 7086 * * * 5212 * * 194
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+
+E 195 3707 5910 6647 2652 5147 6801 5316 4433 3843 4974 5991 7062 * 4020 2907 3848 3397 2784 * * 195
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+ 29 6691 6567 368 2153 0 * 10409 1454 1733
+
+H 198 6343 * 6806 5492 4632 5617 1919 6498 6883 5786 5578 1413 * 4974 5465 3578 5521 * * 4747 198
+ 47 6441 5602 3907 100 0 * 10446 1011 1026
+
+Q 199 4207 * 4853 2613 6821 3921 6380 4783 2821 5576 6518 5302 2782 3870 4550 3923 4868 4878 * 4828 199
+ 0 * * * * * 0 10225 0 1308
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+G 200 2577 * 3764 3219 * 3266 4381 5478 6446 3794 * 3384 4183 4830 4914 3005 * 4967 * 5818 200
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+P 204 4745 5852 5745 5044 * * 4171 * 4929 5652 * 3723 1747 4244 3711 3232 2849 4631 * * 204
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+
+T 206 5105 5646 4810 3478 * * 4870 * 3917 * * 3890 5942 5608 3534 2500 2006 3471 * 5738 206
+ 53 4785 * 1582 587 * * 9513 1207 0
+
+K 207 2823 5722 5614 5907 5607 5683 4647 3982 2770 4521 * 5848 * 4723 2998 4849 3111 2852 * * 207
+ 0 * * * * * * 9483 0 0
+
+S 208 * * 5611 3908 4912 * 4811 4894 4988 * * 2305 6294 5920 4833 2324 1851 4818 * * 208
+ 0 * * * * * * 9483 0 0
+
+F 209 6248 5601 * * 2562 * * 2163 6147 2449 5653 * * * 5654 * 4029 2383 6151 3845 209
+ 0 * * * * * * 9411 0 0
+
+N 210 * * 5068 * * 5596 5271 * 3912 * * 1907 * * 2912 2115 2535 4201 * * 210
+ 0 * * * * * * 8262 0 0
+
+R 211 * * * * * * * * 2515 * 3177 * 3287 3223 1308 * * * 3308 * 211
+ 0 * * 0 * * * 5040 0 0
+
+//
+�HHsearch 1.5
+NAME 9287755aa6aa27583da6be3b2408bfcc
+FAM
+FILE 9287755aa6aa27583da6be3b2408bfcc
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:18:36 2013
+LENG 146 match states, 146 columns in multiple alignment
+FILT 107 out of 1086 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
+HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9999999999999998855677999999999998978888762334568388874389999999999999999998476389999999998787619998
+9999999999999998734049999999999999999999987648
+>Consensus
+mxLsxxxxxxixxsWxxvxxxxxgxxxxxxlfxxxPxxkxxFxxxxxxxxxxxlxxxxxxxxhxxxxxxxlxxxixxlxxlxxxlxxlgxxHxxxxgvxx
+xxxxxxxxxlxxxlxxxlgxxxxxxxxxAWxxxxxxixxxmxxxxx
+>9287755aa6aa27583da6be3b2408bfcc
+VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDP
+ENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH
+>gi|454407|gb|AAA33018.1| hemoglobin [Casuarina glauca]gi|454920|emb|CAA54775.1| haemoglobin [Casuarina glauca]
+MALTEKQEALLKQSWEVLKqnIPAHSLRLFALILEAAPESKYVFSFLKDS---NEIpENNPKLKAHAAVIFKTICESATELRQkghAVWDNNTlkrLGSI
+HLKN-KITDPHFEVMKGALLGTIKEAIKENWSDEMGCAWTEAYNQLVATIKAEM-
+>gi|114799562|ref|YP_759630.1| globin domain-containing protein [Hyphomonas neptunium ATCC 15444]gi|114739736|gb|ABI77861.1| globin domain protein [Hyphomonas neptunium ATCC 15444]
+--------I-ILSTFERAaqACADPAPLIYARLFELRPDFKPLFDMD----------TDGGVRGS--MLETCFEAILGVIEGassQRVIISAARFSHGG-
+YGVVDEEFDIMFASIRDVFRDLLGARWTGTEEAQWAILLKEIAAis-------
+>gi|321473021|gb|EFX83989.1| hypothetical protein DAPPUDRAFT_223071 [Daphnia pulex]
+-SFSQKDVDVIVNTWNTLKRrGDFAPKVFIRYFKAKPESQKMFPAFANVPI-TELPTNHDFLNSAYTCITSLNYLIPYLKFdHPERCPAFP-KHLkDKYN
+A--VDLKKLGSIWMTAMQEEMGNAFTNDVRDVWKKAVMAVIEYA-----
+>gi|110319969|emb|CAJ44467.1| haemoglobin type 2 [Biomphalaria glabrata]
+-GPTANDRKALDSSWRKLRSgaggrKNAGTNLVLWMLSNVPNMRSQFSKFDANQPDSVLKENTEFLNQVDRILGGIESLVNTVNDpvaLKAAIDKLADAH
+LSmPSRIGLDFFGPLQQNIAQYIQQELGVSADSDESKAWPDLFAAYNLVLKE---
+>gi|20270894|gb|AAM18464.1|AF461710_1 myoglobin [Clonorchis sinensis]gi|23344091|gb|AAN28366.1| 17 kDa myoglobin [Clonorchis sinensis]
+-PLSKDEVDaLFEELNPLVSTteqrTEFGKAVYMALFSAYPEYIQLFTKMQGLTK-DNVEASEGIKYYGQTFADSILEMLQCASDdgkLEAVLEKSGKEH
+IT-RNVTKQQFLSAEEVFIKHFSGVLT---KEENKQSMERFLKHIVPKVAGF--
+>gi|339256778|ref|XP_003370265.1| putative globin [Trichinella spiralis]gi|316965561|gb|EFV50254.1| putative globin [Trichinella spiralis]
+-KFTDEEVELLARTWKKDDFDwlyRIGTDIYTCVFQLAPELKVFFPYVTECEKkNQSWESSKGFRTQALRFVQILGMAVEKTESrmkdddshLHHRLYKL
+GETHRRfaLKGFTPTHWKGFVIAVRVAMRRAVeaMPNLTPAecetAIEAWDKLSRYVVHRMEEGY-
+>gi|88813510|ref|ZP_01128744.1| hypothetical protein NB231_06775 [Nitrococcus mobilis Nb-231]gi|88789223|gb|EAR20356.1| hypothetical protein NB231_06775 [Nitrococcus mobilis Nb-231]
+---------LFNDSYERCidnpNPPGFLQRFYKVFLSSSEEVAEKFKNT-DF------------EKQTRVLKASLYYLMLScngSPEAMAHLRRIACLHS
+rkQ-LDIRPELYDLWLASLLQAAREYD-PRFDQQTETAWRQVLSHGIDFMKSRY-
+>gi|195427633|ref|XP_002061881.1| GK17234 [Drosophila willistoni]gi|194157966|gb|EDW72867.1| GK17234 [Drosophila willistoni]
+--FSLTEKVALRQAFDLIKPfrRKMGKDIFYTYLVQHEDVIDIFRKNGDldek---------inLTALHKHAQTMMRTIHFVVNKgld-DMpsFHMMAHD
+IVNIHVD-HWVPKAHVQLLGLAIRDYVLNVMSNRCSESLISGFDKVLN-----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 * * * * * * * 3695 * * 477 * 3844 * * * * 2894 * * 1
+ 0 * * * * * * 5465 0 0
+
+H 2 4212 5857 4689 6101 * 3092 4108 5650 3484 * * 3997 2361 * 4118 2462 4270 4544 * * 2
+ 0 * * * * * * 7886 0 0
+
+L 3 * * * * 3156 * * 4451 * 507 3882 * * * * * * 4157 6116 * 3
+ 0 * * * * * * 8397 0 0
+
+T 4 6361 * 4464 * * * 6303 * 5324 * * 3779 6105 6149 * 1260 1442 5814 * * 4
+ 0 * * * * * * 8428 0 0
+
+P 5 2600 6113 2810 3571 * 5187 5845 5482 3418 4799 5150 6472 2753 4699 5464 3718 6037 5046 * 5225 5
+ 0 * * * * * * 8481 0 0
+
+E 6 2566 6575 3311 2771 * 5362 4634 4295 2729 6645 * 4711 6491 4350 4165 3383 5442 6622 * 6180 6
+ 0 * * * * * * 8590 0 0
+
+E 7 4651 * 2219 1770 * * 5509 * 5499 6364 * 5055 * 1569 * * 5113 * * * 7
+ 0 * * * * * * 8702 0 0
+
+K 8 4625 * * 5543 5058 * 6428 2435 2129 3772 6832 * * 4920 2338 * 5069 3243 5602 6165 8
+ 0 * * * * * * 8694 0 0
+
+S 9 3220 * 3302 2685 4869 6796 4805 4224 2635 4926 * 5428 * 3157 3998 4691 6315 5745 * 4591 9
+ 38 6249 6298 0 * * * 8785 1043 0
+
+A 10 2627 * 4933 5755 6857 6552 5685 3626 4691 1420 5735 4714 * 5656 * * 3530 3451 * * 10
+ 0 * * * * 0 * 8926 0 1036
+
+V 11 4816 * * * 4267 * * 1694 * 2188 5056 * * * * * 5496 1637 * 6577 11
+ 0 * * * * * * 8950 0 0
+
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+ 0 * * * * * * 8950 0 0
+
+A 13 3560 * 2471 3386 * 4574 5704 * 3308 6597 * 3262 * 3103 4240 2511 6858 * * 6777 13
+ 0 * * * * * * 8950 0 0
+
+L 14 3055 * 5345 * 6447 * 5241 5616 * 4911 * * * 5660 * 1152 2088 4517 6075 * 14
+ 0 * * * * * * 8950 0 0
+
+W 15 5545 * * * 3394 * * 5602 * 5674 6620 6359 * * * * * 5701 432 4054 15
+ 0 * * * * * * 8950 0 0
+
+G 16 2423 6492 4049 3028 6277 4066 * 6205 3128 * * 2986 3861 4279 4363 3833 4488 6775 * * 16
+ 0 * * * * * * 8950 0 0
+
+K 17 3069 * * 5653 * 5081 6726 4446 2634 3593 5913 4542 4281 3465 2936 4044 4239 3701 * 6738 17
+ 33 5471 * 2103 382 * * 8950 1227 0
+
+V 18 3376 4389 6366 * 4798 * * 2022 7041 2373 5044 6277 6996 6959 6482 6597 * 1834 * * 18
+ 711 1361 * 972 1028 * * 8950 5639 0
+
+N 19 5180 6867 3206 3680 5121 4577 5245 6942 2519 5204 * 2754 5733 4452 3383 3614 5209 5583 * 4942 19
+ 467 1854 * 1308 746 * * 8950 4503 0
+
+V 20 3635 4923 4791 4749 6366 3499 4850 5262 2703 4909 5071 5202 2693 5944 4225 3922 5341 4376 6305 4950 20
+ 490 1795 * 1325 735 * * 8950 4644 0
+
+D 21 3758 * 2482 3182 * 3849 6420 * 4531 5682 * 3585 4598 3573 3549 4528 3487 3910 * * 21
+ 115 3704 * 2189 357 * * 8961 2046 0
+
+E 22 4314 * 3244 2342 6319 4274 6883 6438 3446 4468 6662 5464 6309 3455 3164 4605 3504 4360 * * 22
+ 38 5280 * 1249 788 * * 8961 1326 0
+
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+
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+ 15 6560 * 2000 415 1096 910 8934 1012 1176
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+H 92 * * * * * 5839 70 * * * * * * 6500 * 5708 * * * * 92
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+N 139 3396 6410 2414 2924 6372 3826 4850 6659 3808 6165 * 3043 4821 5068 5548 4029 3973 * 6630 5754 139
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+H 146 * * * * * * 1917 * 444 * * * * * * * * * * * 146
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+
+//
+�HHsearch 1.5
+NAME 9343cd2395312266b68b016d74fb3c86
+FAM
+FILE 9343cd2395312266b68b016d74fb3c86
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:15:32 2013
+LENG 84 match states, 84 columns in multiple alignment
+FILT 131 out of 989 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEECCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCC
+>ss_conf PSIPRED confidence values
+976366032078899989868989999879899899999999972998379997884899538999879999389998853559
+>Consensus
+xxxvixxpxxTEKsxxxxexxnxyxFxVxxxanKxxIKxavexlfxVkVxxVnTxxxxxxxKKAxVxLxxgxxaxxxaxxxgxx
+>9343cd2395312266b68b016d74fb3c86
+SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRIGVF
+>gi|162606070|ref|XP_001713550.1| 60S ribosomal protein L23A [Guillardia theta]gi|13794470|gb|AAK39845.1|AF165818_53 60S ribosomal protein L23A [Guillardia theta]
+IYKQLIYPVTSESAMKKIQTSNTLTFLVEPMNNKNSLKKIISKLFKVKTIKINSLISMNGKKKIFVKLGPEHDALDVANKIGYI
+>gi|116515257|ref|YP_802886.1| 50S ribosomal protein L23 [Buchnera aphidicola str. Cc (Cinara cedri)]gi|58384690|gb|AAW72705.1| 50S ribosomal protein L23 [Buchnera aphidicola (Cinara cedri)]gi|116257111|gb|ABJ90793.1| 50S ribosomal protein L23 [Buchnera aphidicola str. Cc (Cinara cedri)]
+-LKIILSAHVSDKTSDNMKRNNTVVLKVLKNSKKYEIKLAIEKFFKVRVYKINTLIVKgkrkrqknkickfSNWKKAYVILHTGQ------------
+>gi|58617354|ref|YP_196553.1| 50S ribosomal protein L23 [Ehrlichia ruminantium str. Gardel]gi|58416966|emb|CAI28079.1| 50S ribosomal protein L23 [Ehrlichia ruminantium str. Gardel]
+-FSIIHSSIITEKAVLLNEKFNKYAVYVSGDADKKTIKKAFKVVFGLDVVRINILNQKgkkkyfkgiighrKDRKKVYFSLLKDQ------------
+>gi|281339576|gb|EFB15160.1| hypothetical protein PANDA_018218 [Ailuropoda melanoleuca]
+--PIIKFSL----TIKKMENNSTLVFTVDAKANNPQIKHSLKKLHDIDVAEVNTLVRPEEAQEAYTKLVSD------------y-
+>gi|251772492|gb|EES53058.1| Ribosomal protein L25/L23 [Leptospirillum ferrodiazotrophum]
+ISDVLIRPILSEKSDRVREKNSVYLFHVYKKANKIQIQKAIESIFNVKVESVRTVVRKgkakrigivkgslPDRKRAYITLKDGFK-LDI-------
+>gi|49574623|ref|NP_848102.2| ribosomal protein L23 [Adiantum capillus-veneris]gi|68566046|sp|Q85FI0.2|RK23_ADICA RecName: Full=50S ribosomal protein L23, chloroplasticgi|48476034|gb|AAP29433.2| ribosomal protein L23 [Adiantum capillus-veneris]
+--DKLKNQVITGKSIRLLQQ-NQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRMTskngkkknklnityVSYKKMIVRLKKNYF-IPL-------
+>gi|268680585|ref|YP_003305016.1| 50S ribosomal protein L23 [Sulfurospirillum deleyianum DSM 6946]gi|268618616|gb|ACZ12981.1| 50S ribosomal protein L23 [Sulfurospirillum deleyianum DSM 6946]
+----IKAILYTEKSLSLQEN-GTVVIQTSVRMTKNGLKEVLKQYFGFTPIKINSLRVMgkvkkfkgiegkrNDFKKFYVQLPEGAKL----------
+>gi|225709724|gb|ACO10708.1| Probable mitochondrial 39S ribosomal protein L23 [Caligus rogercresseyi]gi|225711026|gb|ACO11359.1| Probable mitochondrial 39S ribosomal protein L23 [Caligus rogercresseyi]
+---------------------NVIKFHVSPEMSRLDAKSYLEKIYGLPVMDVHSfhpsqKIKVsrlksdilykkegHEFKVIYAVLPKDFS---------
+--
+>gi|159478154|ref|XP_001697169.1| mitochondrial ribosomal protein L23 [Chlamydomonas reinhardtii]gi|158274643|gb|EDP00424.1| mitochondrial ribosomal protein L23 [Chlamydomonas reinhardtii]
+----ICFPNITLQMMKLTPEQmdqvketgwlREVAFKTTPDVTKLEIAAFLQSVYGMNVERVSTINYLgrrrlaisrngkrlwwreDDWKKAYVIFRPP-
+------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 2748 5674 5951 5583 4824 * 2851 3537 * 2417 4787 6009 2800 * * 3463 5755 5885 * 5277 1
+ 0 * * * * * * 4629 0 0
+
+W 2 4165 6405 6551 5327 2703 * 4115 3921 6446 3881 * 6231 * 5484 4415 5214 4329 5147 6177 1560 2
+ 75 5341 5264 224 2800 * * 4985 1161 0
+
+D 3 5506 * 1490 4347 * 4377 * 5646 3371 * * 3505 5710 3728 4016 3152 4927 * * 5770 3
+ 34 5440 * 0 * * 0 5257 1058 1055
+
+V 4 * 6563 6103 6804 7261 4577 * 1806 5332 3817 * 6426 7107 4558 * 6240 4396 1409 * 4748 4
+ 91 4380 6240 1360 712 * 0 5300 1216 1055
+
+I 5 * * * * 4654 * * 979 * 1786 6506 * * * * 6346 5545 3083 * * 5
+ 13 6808 * 1000 1000 1531 613 5350 1000 1109
+
+K 6 6294 5989 * 5590 5236 * 5841 2190 1599 3182 6498 * 5930 4445 3807 5559 * 3618 * * 6
+ 0 * * * * * 0 5377 0 1055
+
+H 7 4048 * 5341 5145 5443 5851 4585 4642 2676 5446 4986 4334 * 4173 2764 2847 5658 6368 * 2938 7
+ 0 * * * * * 0 5400 0 1055
+
+P 8 4372 * * * 5942 4674 6575 4982 * 4948 * * 479 5070 6494 5140 * 4843 * * 8
+ 0 * * * * * 0 5400 0 1055
+
+H 9 * * * * 5019 * 3700 2268 5626 1987 6395 6013 * 5801 5533 6261 * 1877 6221 4427 9
+ 34 5443 * 1505 627 * 0 5419 1073 1055
+
+V 10 5709 * * * 4389 * 6097 2135 7035 2321 7476 5198 6486 6543 * 4456 3436 1909 * 5374 10
+ 31 6801 6347 0 * * 0 5430 1000 1055
+
+T 11 5328 * * * * 6760 * 6052 * * * 4900 6072 * * 2149 563 * * * 11
+ 0 * * * * * 0 5462 0 1116
+
+E 12 * * 3170 395 6568 6652 * * 6344 5294 * * * 5790 5222 5912 6864 * * * 12
+ 0 * * * * 1425 672 5525 0 1116
+
+K 13 5516 6088 * 5541 * * 7223 * 405 * * 6361 6168 5194 4141 3833 * * * * 13
+ 36 * 5323 * * * 0 5569 0 1055
+
+A 14 1901 * * * * 5136 * 5948 6849 * 5035 5041 * * * 1389 2256 6011 * 6456 14
+ 29 6771 6583 1000 1000 922 1083 5512 1000 1169
+
+M 15 5352 6475 7042 5664 5756 5582 * 3685 6666 4161 2465 4391 * 5016 6897 3389 2012 4171 * 3521 15
+ 0 * * * * * 0 5593 0 1126
+
+N 16 3933 * 4821 5682 5142 4332 5649 5201 2649 3747 3429 3776 * 4079 2737 4432 4338 4535 * 7186 16
+ 31 5546 * 2325 321 1289 759 5593 1134 1126
+
+D 17 4650 * 5415 5790 5693 4986 5999 4378 2779 1271 3772 5204 6289 4335 6361 5806 5306 6213 * 6309 17
+ 46 4983 * 0 * * 0 5608 1107 1055
+
+M 18 3462 * 7040 4908 4568 5895 * 2686 5260 2492 3231 5095 5755 4421 4037 4266 3439 4504 * * 18
+ 13 6836 * 0 * * 0 5608 1000 1055
+
+D 19 4688 * 3651 878 * 4605 * * 4831 5794 6826 6762 5513 3620 7218 3959 5064 7453 * 6033 19
+ 77 5231 5307 2651 250 * 0 5608 1084 1055
+
+F 20 5349 * 3487 3053 6946 4973 7631 6291 2302 6316 5674 2488 * 3353 3727 3731 5176 * * 5765 20
+ 945 * 1058 * * 1521 618 5595 0 1215
+
+Q 21 4705 * 3783 2289 3550 6510 4149 4756 4823 6254 * 2332 5066 4388 5835 4266 4209 * * 4430 21
+ 33 5483 * 3322 152 93 3999 5110 1015 3315
+
+N 22 6589 * 4641 7222 * 2991 6501 * 3448 * * 844 5887 7421 3910 4113 6578 * * * 22
+ 63 4540 * 2371 310 0 * 5764 1267 1121
+
+K 23 5900 6949 7460 4621 * * 5116 6599 2136 5855 * 6535 7763 2378 3718 5452 2347 2979 6906 7257 23
+ 0 * * * * * * 5815 0 0
+
+L 24 6569 * * * 5215 * * 2856 6495 2226 5115 * * * * * * 3042 6751 1184 24
+ 31 5562 * 0 * * * 5917 1067 0
+
+Q 25 3658 5275 * 5588 5806 5292 * 4708 * 5326 5507 * 6958 4243 * 3905 1528 1912 * 7521 25
+ 26 * 5806 * * * * 5917 0 0
+
+F 26 * * * * 349 * * 4781 * 3383 * * * * * 4797 * 4717 * 6841 26
+ 0 * * * * 0 * 5872 0 1055
+
+A 27 5047 * 3826 3614 6495 * 5857 2347 2771 3850 6914 4440 * 3909 3915 5729 4428 4041 5932 4404 27
+ 16 6495 * 0 * * * 5917 1006 0
+
+V 28 4486 4722 * * * * * 4362 * * * * * * * 6304 3811 349 * * 28
+ 0 * * * * * * 5917 0 0
+
+D 29 3227 * 1555 3698 6243 5256 4129 6922 6542 6180 * 3633 4576 5488 5030 3042 6009 5692 * 6085 29
+ 0 * * * * * * 5917 0 0
+
+D 30 3841 5507 7004 5498 * 5745 * 3816 2800 3969 4055 5473 2228 * 2935 4164 7281 3440 * * 30
+ 0 * * * * * * 5917 0 0
+
+R 31 5811 7221 2902 4054 * 4616 5308 * 1762 * 6580 2935 * 5393 2759 3584 5909 * 6980 * 31
+ 0 * * * * * * 5917 0 0
+
+A 32 819 * * * 6996 * * * * 3283 3337 6580 5796 * * 3591 5426 3878 * 5573 32
+ 0 * * * * * * 5917 0 0
+
+S 33 6338 * 5039 * * 4624 7281 * 5493 * * 1352 6851 * 6282 2557 1714 * * * 33
+ 0 * * * * * * 5917 0 0
+
+K 34 * * * * * * * * 107 * * * * * 3803 * * * * * 34
+ 0 * * * * * * 5917 0 0
+
+G 35 4739 5562 6613 5688 6950 5980 3965 3643 3605 3423 * 4785 2616 4738 3810 7112 2275 6771 6569 5229 35
+ 0 * * * * * * 5917 0 0
+
+E 36 7460 * 2970 1645 6980 5941 5806 7312 4286 4634 5937 5370 * 1678 * 5124 6749 7040 * 6901 36
+ 0 * * * * * * 5917 0 0
+
+V 37 * * * * 6520 * * 469 * 4301 5961 6670 * * * 6741 * 2470 * * 37
+ 0 * * * * * * 5917 0 0
+
+A 38 3749 * * * 6217 6587 * 6561 503 * * * * 4258 3096 5954 * * * * 38
+ 14 * 6670 * * * * 5917 0 0
+
+D 39 3252 * 4036 2868 * * 5868 6122 2982 4456 6041 3453 * 2421 3124 4373 5965 6154 * 7112 39
+ 0 * * * * * 0 5917 0 1032
+
+A 40 900 6756 5859 4274 4761 * * 4551 * 4137 * * * * 5748 4647 6927 5044 4661 3144 40
+ 0 * * * * 0 * 5917 0 1032
+
+V 41 * * * * 3154 * * 1804 * 2396 5941 * * * * * * 1340 * * 41
+ 0 * * * * * * 5917 0 0
+
+E 42 6451 * * 812 7131 6741 * * 2463 6997 6509 5047 * 3996 4501 5060 4826 * * * 42
+ 0 * * * * * * 5917 0 0
+
+E 43 3505 * 5113 3271 6273 * 6914 6243 1714 4215 6078 4260 * 3218 4380 3611 4538 5458 * 5945 43
+ 0 * * * * * * 5917 0 0
+
+Q 44 3931 * * * 3918 * * 2505 5610 1396 3901 6224 * 5022 4971 6217 6751 3686 5872 5008 44
+ 36 * 5362 * * * * 5917 0 0
+
+Y 45 * 4583 * * 1017 * * * * 5289 6916 * 5621 * * 5748 * * 5744 1425 45
+ 12 6956 * 1585 585 1144 869 5731 1002 1109
+
+D 46 * * 2031 4104 * 1924 * * 3127 * * 2120 * 4949 5204 5071 * * * * 46
+ 49 4915 * 482 1815 * 0 5867 1164 1038
+
+V 47 5265 6894 * 6626 5531 7273 * 3748 6676 4370 6833 * * 5276 * 6504 3287 645 * 7101 47
+ 0 * * * * 0 * 5867 0 1038
+
+T 48 5902 * 3277 3819 7270 6771 6851 * 1324 6217 * 3893 4068 5432 3758 4573 3601 5405 * * 48
+ 0 * * * * * * 5917 0 0
+
+V 49 5833 * * * * * * 3976 * 6338 * * 3279 * * 5872 5294 394 * * 49
+ 0 * * * * * * 5917 0 0
+
+E 50 2872 * 4915 2737 * * 6304 3829 2795 3368 * 4738 * 6772 4841 5607 3720 2778 * 4940 50
+ 0 * * * * * * 5917 0 0
+
+Q 51 3612 * 3552 3973 * 3931 * * 1596 * * 3744 * 5146 3284 2579 * * * * 51
+ 0 * * * * * * 5913 0 0
+
+V 52 5603 5831 * * * * * 2552 * 5910 5871 * * * * * 6846 417 * * 52
+ 0 * * * * * * 5913 0 0
+
+N 53 5801 5764 * * * * 5344 6594 6995 * 6561 630 * 5547 2491 5188 4970 * 7445 * 53
+ 0 * * * * * * 5913 0 0
+
+T 54 * * * * * * * 4274 6271 6580 6108 5523 * * * 2951 561 3614 * * 54
+ 24 * 5907 * * * * 5903 0 0
+
+Q 55 4441 4860 * * * * 3687 3160 5587 1628 3436 * * 4168 4295 4054 * 3392 * 5003 55
+ 0 * * 0 * 0 * 5901 1023 1097
+
+N 56 * 6834 * * 6367 * 5794 1598 5309 5442 6063 1713 * * 2687 6193 6111 3828 6847 * 56
+ 73 5725 5049 3807 107 * * 5903 1105 0
+
+T 57 4901 6318 6347 * 5818 7039 * 5121 4638 3935 3908 5737 4863 3870 3058 3979 2920 2207 * 4016 57
+ 13 6774 * 0 * 583 1590 5919 1002 1136
+
+M 58 4137 * 5790 4318 5437 5836 7407 5925 2382 3777 3766 6926 1865 4178 4227 4459 5142 6847 * * 58
+ 1382 748 5583 3817 106 0 * 5926 3809 1013
+
+D 59 3232 * 4027 4705 * 4221 6245 * 2731 7586 5557 3498 2766 7145 4142 2740 4184 6965 5464 6010 59
+ 138 4238 4720 3416 142 1059 944 5923 1297 1100
+
+G 60 4559 7345 2160 5088 6161 1814 5397 * 3830 * * 3671 * 7046 3935 3352 6077 * 5470 5703 60
+ 62 6999 4870 0 * 359 2182 5793 1023 1299
+
+E 61 7188 * 6421 3702 3156 5312 * 6933 4454 4481 5788 5079 * 6842 2912 6670 3808 5854 2586 2222 61
+ 50 4883 * 3456 138 0 * 5907 1130 1320
+
+K 62 * * * 4648 * 5621 * * 191 * * 6253 * * 4301 * * * * * 62
+ 0 * * * * * * 5940 0 0
+
+K 63 * * * 5517 6484 * 6379 5466 464 6384 * * * * 2751 * * 4726 * 6777 63
+ 0 * * * * * * 5940 0 0
+
+A 64 531 6839 * * 5783 5542 5668 4953 * * 3633 * 5835 * 6996 * * 3301 * * 64
+ 0 * * * * * * 5834 0 0
+
+V 65 * * 5835 * 3018 * * 1469 * * 4293 * * * 6896 6415 4933 3607 * 1681 65
+ 26 * 5823 * * * * 5834 0 0
+
+V 66 5436 * * * 4341 * 5388 1854 * 5601 * * * * * * 5711 768 * * 66
+ 30 5611 * 3310 153 0 * 5792 1156 1055
+
+R 67 * * 6941 5117 * * 7152 5905 2472 5652 6776 * 5818 4030 2880 3464 1461 4562 * 5707 67
+ 0 * * * * * * 5834 0 0
+
+L 68 * * * * 3326 * * 4892 * 502 5748 * * * * 5652 5528 3319 * * 68
+ 16 * 6521 * * * * 5834 0 0
+
+S 69 2266 * 4145 3830 * 5873 5617 * 2275 6614 6001 5604 3097 4379 3859 4359 4926 4640 * 5695 69
+ 45 6910 5485 0 * * 0 5813 1000 1030
+
+E 70 3244 * 3136 2148 6808 5854 5775 7026 3084 4966 * 5184 2964 5165 4586 3462 5182 6722 * * 70
+ 17 * 6453 * * * 0 5714 0 1144
+
+D 71 6007 * 3067 2880 * 1108 6102 * 6178 6420 * 4442 4122 * 5828 4315 5070 5372 * * 71
+ 0 * * * * 0 * 5694 0 1198
+
+D 72 5866 * 2661 3400 6211 4440 4122 4799 4278 5736 * 4792 7022 2509 6750 5358 7216 4109 * 2405 72
+ 9 7325 * 1000 1000 * * 5558 1000 0
+
+D 73 4658 * 2846 3941 5636 * 4747 5092 2366 7045 * 4497 5547 4715 4125 2430 3478 4983 * * 73
+ 636 * 1488 * * * * 5508 0 0
+
+A 74 528 * 4287 * * * * 2602 * 3887 * * * * * * 5451 * * * 74
+ 0 * * * * 0 * 4787 0 2032
+
+Q 75 * * 5786 3354 4895 * * 1323 5455 1976 4292 * * 6147 4668 4185 * 6129 * * 75
+ 0 * * * * * * 4952 0 0
+
+E 76 4372 * 1276 2086 * * * * 4291 * * 4931 3400 5857 4902 5786 4980 5373 * * 76
+ 0 * * * * * * 4952 0 0
+
+V 77 4406 * * * 3228 * * 1747 * 2651 * * * * * 5373 4958 1981 * 3657 77
+ 48 4929 * 0 * * * 4952 1007 0
+
+A 78 564 * * * 4172 3760 * * * 3165 * * 5076 * * * 5086 * * 5402 78
+ 44 * 5045 * * * * 4420 0 0
+
+S 79 4227 * * 4843 * 5252 * * 4851 4771 3543 2114 * * * 1808 2473 4969 * * 79
+ 0 * * 0 * 0 * 4193 1022 1022
+
+R 80 4584 * * 3756 * * * * 1116 * * * * 3484 1752 4771 * * * * 80
+ 0 * * * * * * 4126 0 0
+
+I 81 3618 * * * * * * 1540 * 1132 3544 * * * * * * 4942 * * 81
+ 0 * * * * * * 4055 0 0
+
+G 82 * * * * * 196 * * 4595 * * 4458 * * * 4648 * * * * 82
+ 0 * * * * * * 3995 0 0
+
+V 83 3789 * * * 3142 * * 1359 * 2391 4653 * * * 4648 * * 3167 * 4541 83
+ 0 * * * * * * 3995 0 0
+
+F 84 4814 * * * 2245 * * 1275 * 2506 3680 * * * * * * 3535 * * 84
+ 0 * * 0 * * * 3919 0 0
+
+//
+�HHsearch 1.5
+NAME 93a4e2eb4447ccb72cf9476930f1f5df
+FAM
+FILE 93a4e2eb4447ccb72cf9476930f1f5df
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:33:27 2013
+LENG 148 match states, 148 columns in multiple alignment
+FILT 106 out of 1062 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
+CHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9899999999997779999486999999999807888899999999998287889954799999999988654300231269999999998676899958
+799999999983799999999999998577899818099999998649
+>Consensus
+xxxxxxxxxFxxxDxxxxgxixxxexxxxlxxxxxxxxxxxxxxlxxxxxdxxxxxxixxxefxxxxxxxxxxxxxxxxxxxxxxxxxfxxxDxxxxgxI
+xxxelxxxxxxxxxxxxxxxxxxxxxxxxxxxxgxixxxefxxxlxxx
+>93a4e2eb4447ccb72cf9476930f1f5df
+SATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKV
+SVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ
+>gi|335293094|ref|XP_001928795.2| PREDICTED: EF-hand domain-containing protein 1 [Sus scrofa]
+------------------------------------RRDTPALELDS-PQGRPKPrkGPKGVGGQ-----------------------------------
+--------------------------------------------------
+>gi|255084932|ref|XP_002504897.1| predicted protein [Micromonas sp. RCC299]gi|226520166|gb|ACO66155.1| predicted protein [Micromonas sp. RCC299]
+--SEALRVVFHALDGDDSGSIEIEEVLHLATGMCQTMSEDDARAWFQ-EMDKDGDATVDEAEYLEAMLKLTDDLSpqqfehrvkdllartnkevtdprwy
+yhcennreyleaevvpllesglnemmraieaerlrvasgkdwdedghvppdwrpmrplqflgeylrensrtmvrkreeearlaaeaaakaeylnrtFDEM
+DREQKLRYSFDKIDGDGNGALDFDELVFVCRKINPGKGVEEARMQLSWMDKDGDGQVDQDEYVNAILE-
+>gi|74189848|dbj|BAE24569.1| unnamed protein product [Mus musculus]
+--IAASTNRGKDLIGVQNLLKKHQALQAEIAGHEPRIkavt-----------------------------------------------------------
+----------------------------------------------------
+>gi|270012781|gb|EFA09229.1| stem cell tumour protein [Tribolium castaneum]
+-LRDQWRQFFDKYDPEGFGEIPWGDLISAMSDPEFrhRVGTGKREILLE-KARSATTPAITFQDFVNVMTGK----------------------------
+--------------------------------------------------
+>gi|340500330|gb|EGR27218.1| protein kinase domain protein [Ichthyophthirius multifiliis]
+-----INSYLDDNNNNNTinkDFINEDQFYQLLLSIDNRIAKDDSNYLFQ-NIihqlqseqtitssNNQNEKQISIQLFKMILNEQ-------NYIEIEQ
+ktiqifnslkgifkhknfdLNFIYSNYNDESKEILNQQKFQQILKILNIDLQKYEINCVFEIFDKKKNGIVTYQQFYQILNEL
+>gi|281202106|gb|EFA76311.1| phosphoinositide-specific phospholipase C [Polysphondylium pallidum PN500]
+SLDNEMGFVMREFNSFGKDSLNRDEIKKLLERLNYTTSSEMLARMMA-MVDRNDDCNLDFVEFSDLLK---------YLRSRPEIKMIFERYSSDSAQHL
+TIPQMIRFFKEEQqEDWKESDCIALITKYNHEELPHILFEQLEDYIVSD
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+S 1 3510 * 3490 1637 * 4260 * * * * * * 4190 3354 * 2031 4255 * * * 1
+ 0 * * * * * * 7021 0 0
+
+A 2 2946 * 4219 2307 5681 * 4106 5190 4069 5070 * 5118 * 2041 3049 5184 * * * * 2
+ 0 * * * * * * 8538 0 0
+
+T 3 4803 * 5682 3351 5616 5758 * 2285 4232 2303 4690 4811 4710 4723 6620 4524 5525 3287 5747 * 3
+ 0 * * * * * * 9520 0 0
+
+R 4 3224 * 4562 3011 * 6096 6025 4980 2864 4951 * 3994 6129 3887 2581 2554 6251 * * * 4
+ 0 * * * * * * 9951 0 0
+
+A 5 4079 5439 3468 2230 * * 4932 5007 3636 5133 6064 6180 * 3634 2591 4520 4321 5240 * 4439 5
+ 0 * * * * * * 9980 0 0
+
+N 6 3721 5425 * * 2488 * * 2371 5322 1805 5461 6065 * * * 6815 4954 3445 4647 7020 6
+ 39 5242 * 938 1065 * * 10388 1260 0
+
+K 7 3885 7022 * 3582 4760 5621 4564 4440 2663 4202 6255 5519 6602 3193 2524 4030 5725 5826 6224 4513 7
+ 0 * * 0 * * * 10475 1005 0
+
+D 8 4210 6374 2802 2969 5123 6778 5588 5392 2809 5437 4783 4288 6011 3679 3142 4011 5049 5156 * * 8
+ 25 * 5892 * * * * 10531 0 0
+
+I 9 2856 4987 5683 4733 4891 7193 6358 2321 5448 3346 3975 6684 * 4635 4264 5574 4681 2820 5519 6614 9
+ 0 * * * * * 0 10539 0 1106
+
+F 10 6584 4680 * * 561 6970 * 5174 * 3756 5771 * * * * 6521 * 6000 5412 3402 10
+ 18 6298 * 0 * 0 * 10539 1020 1106
+
+T 11 3488 6676 4101 4045 6440 4537 6361 6644 2849 4340 4853 2910 * 3836 3326 3680 5336 5066 * 4399 11
+ 12 * 6926 2585 263 * * 10620 1000 0
+
+L 12 3489 5569 4601 3251 4883 6647 4874 4120 2999 2822 3652 4281 * 4307 5067 5811 6503 4313 * 4289 12
+ 13 6833 * 0 * 0 * 10618 1000 1000
+
+F 13 4243 5478 6472 * 1921 * 5602 4204 6791 2169 4566 6655 * 5516 6788 6836 5331 4022 6410 2707 13
+ 60 6393 5112 2807 222 * * 10634 1000 0
+
+D 14 4298 6452 652 4504 * 5184 6524 6972 4681 * * 3812 7212 6528 5079 4954 * 5557 * * 14
+ 13 6855 * 3700 115 0 * 10602 1000 1470
+
+K 15 3841 6613 4158 3616 5568 7038 * 5708 2624 4256 * 4964 3836 4907 3280 3161 3519 4143 6069 6482 15
+ 16 * 6466 * * * * 10657 0 0
+
+K 16 5138 6802 1587 2798 6828 3668 6341 6639 4884 5423 6844 2841 5831 5526 6055 4052 4681 5864 * * 16
+ 85 5625 4748 2075 391 0 * 10633 1190 1042
+
+G 17 5414 * 4352 4886 5408 2317 3598 6625 2393 4963 6380 3632 4298 3601 5148 4554 5471 * 5622 6067 17
+ 31 5556 * 1530 613 882 1128 10611 1477 1645
+
+Q 18 * 6418 2233 4642 * 4916 * 5462 3121 5189 6536 2940 * 5033 5371 2669 2810 4585 * * 18
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+FAM
+FILE 98b5ff80a113b7bb28949a2a5cd20879
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:35:45 2013
+LENG 121 match states, 121 columns in multiple alignment
+FILT 30 out of 32 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCEECCCCEEEECCCEEEEEECCCCCCCCEEEECCCCCCEEEEEEEECCEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEE
+CCCEECCCCCEEEEEEEEECC
+>ss_conf PSIPRED confidence values
+9842725550234630130443024761640212425640001563045653000002033266444037610787999742148312289568876796
+498388988616600088639
+>Consensus
+dgtcxntnsqisxnsxcvxstxtnCyidNSQxxxxttCtxSqyxxaxvxxSttTnCxIdNSQvxtTTCTxSqYxgxxitsSTTTxxxIsgxxxxxttCTi
+TxgxxxpxxaCxISgCtlxax
+>98b5ff80a113b7bb28949a2a5cd20879
+DGTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTI
+TRGVATPAAACKISGCSLSAM
+>gi|11181763|gb|AAF86610.1| antifreeze protein isoform 10 precursor [Choristoneura fumiferana]
+DGSCVNTNSQVSENSWCVRSTLTFCNIDNSQL-ESTTCTRSQYNGAYVVSSRTTNCNIRNSQLHTTTCTNSQYDGVYITSSTTTNTRISGPACSISRCTI
+TRGVAAPSAACRISGCTLRA-
+>gi|11225528|gb|AAG33033.1| PR-S/thermal hysteresis protein fusion protein [synthetic construct]
+DGSCTNTNSQLSANSKCEKSTLTNCYVDKS-------------------------------EVYGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCII
+TGGVPAPSAACKISGCTFSA-
+>gi|57635206|gb|AAW52736.1| antifreeze protein AFP Cr32 [Choristoneura rosaceana]
+---------QISENSRCVNSTANNCYIDNSQV-DTTTCTRSRYINANVMISTTTDCSISNSQVLISTCTNSQFSGIYMTTSTIRDSRISGP---------
+---------------------
+>gi|57635194|gb|AAW52730.1| antifreeze protein AFP Cc5 [Choristoneura conflictana]
+---------QI-TNSRCFKSTATNCYIDNSQL-DTTTCTNSQYNNAYVVISTTTNSIIDYSQVYSTTCTNSHYNGVHITSSTTTNTRITGP---------
+---------------------
+>gi|57635212|gb|AAW52739.1| antifreeze protein AFP Cc9 [Choristoneura conflictana]
+---------HIT-NSECVTSTLTNCNLVNS-------------------------------QVDTTTCTNSEYKDAHISTATTTGTRIA-----------
+---------------------
+>gi|11181765|gb|AAF86611.1| antifreeze protein isoform 501 precursor [Choristoneura fumiferana]
+------------------------CVNTNSQITANSQCVKSTA----------TNCYIDNSQLvDTs-ICTRSQYSDANVKKSVTTDCNIDKSQVYLTTC
+TgsqyngiyirssTTTGTSISGPGCSISTCTI---
+>gi|11181767|gb|AAF86612.1| antifreeze protein isoform 104 precursor [Choristoneura fumiferana]
+------------------------CRNTNSQISANSLCASSTL----------TNCYIDDSQLESTTCTRSQYNGAYVVSSRTTNCNIRNSQVHTTTCTn
+sqyeegvyitssTTTNTRVTGIACSVSSCTI---
+>gi|57635206|gb|AAW52736.1| antifreeze protein AFP Cr32 [Choristoneura rosaceana]
+-------------------------------------------------NSTANNCYIDNSQVDTTTCTRSRYINANVMISTTTDCSISNSQVLISTCT-
+---------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+D 1 * * 0 * * * * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1443 0 0
+
+G 2 * * * * * 0 * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1443 0 0
+
+T 3 * * * * * * * * * * * * * * * 1612 571 * * * 3
+ 0 * * * * * * 1443 0 0
+
+C 4 * 0 * * * * * * * * * * * * * * * * * * 4
+ 0 * * * * * * 1443 0 0
+
+V 5 * * * * * * * * * * * * * * 1625 * 1957 1258 * * 5
+ 0 * * * * * * 1443 0 0
+
+N 6 * * * * * * * * 3014 * * 191 * * * * * * * * 6
+ 0 * * * * * * 1443 0 0
+
+T 7 * * * * * * * * * * * * * * * * 0 * * * 7
+ 0 * * * * * * 1443 0 0
+
+N 8 * * * * * * * * * * * 0 * * * * * * * * 8
+ 0 * * * * * * 1443 0 0
+
+S 9 * * * * * * * * * * * * * * * 0 * * * * 9
+ 0 * * * * * * 1443 0 0
+
+Q 10 * * * * * * 4561 * * * * * * 228 * * * * 5377 3652 10
+ 0 * * * * * * 1761 0 0
+
+I 11 * * * * * * * 240 * 4590 * * * * * * * 3160 * * 11
+ 96 * 3954 * * * * 1761 0 0
+
+T 12 * * * * * * * * * * * * * * * 423 1976 * * * 12
+ 242 * 2697 * * 0 * 1752 0 1000
+
+A 13 1514 * * 2469 * * * * * * * * 4923 3843 2870 3899 2618 * * * 13
+ 0 * * * * 0 * 1713 0 1091
+
+N 14 * * * * * * * * * * * 93 * * * * * * * 3998 14
+ 0 * * * * * * 1761 0 0
+
+S 15 * * * * * * * * * * * * * * * 0 * * * * 15
+ 0 * * * * * * 1761 0 0
+
+Q 16 * * * 4561 * * * * 3663 3995 * * * 1549 1277 * * * 4025 * 16
+ 0 * * * * * * 1761 0 0
+
+C 17 * 0 * * * * * * * * * * * * * * * * * * 17
+ 0 * * * * * * 1761 0 0
+
+V 18 3995 * * 4590 2796 * * * * * * 3946 * * * * * 542 * * 18
+ 0 * * * * * * 1761 0 0
+
+K 19 * * * * * * * * 1643 * * 2841 * * 1803 2813 3166 * * * 19
+ 0 * * * * * * 1761 0 0
+
+S 20 * * * * * * * * * * * * * * * 0 * * * * 20
+ 0 * * * * * * 1761 0 0
+
+T 21 * * * * * * * * * * * * * * * * 55 4741 * * 21
+ 0 * * * * * * 1761 0 0
+
+A 22 1388 * * * * * * * * 1177 * * 4741 * * * * 2855 * * 22
+ 0 * * * * * * 1761 0 0
+
+T 23 * * * * * * * * * * * 3290 * * * * 156 * * * 23
+ 0 * * * * * * 1761 0 0
+
+N 24 * * * * 4025 * * * * * * 91 * * * * * * * * 24
+ 0 * * * * * * 1761 0 0
+
+C 25 * 101 * * * * * * * * * * * * * 3881 * * * * 25
+ 0 * * * * * * 2033 0 0
+
+Y 26 * * * * * * * * * * * 2544 * * 3938 * * 2802 * 690 26
+ 0 * * * * * * 2033 0 0
+
+I 27 * * * * * * * 848 * 3131 * 2261 * * * * * 3040 * * 27
+ 0 * * * * * * 2033 0 0
+
+D 28 * * 631 * * * * * * * * 3881 * * 6005 * 2261 4005 * * 28
+ 0 * * * * * * 2033 0 0
+
+N 29 * * 4223 * * * * * 4992 * * 165 * * * 5442 * * * * 29
+ 0 * * * * * * 2033 0 0
+
+S 30 * * * * * * * * * * * * * * * 0 * * * * 30
+ 330 * 2292 * * * * 2033 0 0
+
+Q 31 * * * * * * * * * * * * * 0 * * * * * * 31
+ 0 * * * * * 0 1976 0 1242
+
+L 32 * * * * * * * 1993 * 1195 * * * * * * * 1680 * * 32
+ 1521 * 618 * * * 0 1976 0 1242
+
+V 33 * * * * * * * * * * * * * * * 1385 2180 1335 * * 33
+ 0 * * * * 880 1131 1620 0 1559
+
+D 34 2399 * 1049 1902 * 4072 * * * * * * * * * * * * * * 34
+ 0 * * * * * 0 1976 0 1242
+
+T 35 3636 * 4072 * * * * * * * * 1937 * * * 2352 1311 * * * 35
+ 0 * * * * * 0 1976 0 1242
+
+S 36 * * * * * * * * * * * * * * * 1521 618 * * * 36
+ 0 * * * * * 0 1976 0 1242
+
+I 37 * * * * * * * 3517 * 3662 * * * 3177 * * 618 * 3803 * 37
+ 0 * * * * * 0 1976 0 1242
+
+C 38 * 0 * * * * * * * * * * * * * * * * * * 38
+ 0 * * * * * 0 1976 0 1242
+
+T 39 3662 * * * * * * * * * * * * * * * 437 2456 * * 39
+ 0 * * * * * 0 1976 0 1242
+
+R 40 * * * * * 2438 * * 3177 * * 2667 * * 1338 2719 * * * * 40
+ 0 * * * * * 0 1976 0 1242
+
+S 41 * * * * * * * * * * * * * * * 0 * * * * 41
+ 0 * * * * * 0 1976 0 1242
+
+Q 42 * * * * * * * * * * * * * 656 3264 * 1937 * * * 42
+ 0 * * * * * 0 1976 0 1242
+
+Y 43 3177 * * * * * * * * 2731 * * * * * * * * * 437 43
+ 437 * 1937 * * * 0 1976 0 1242
+
+S 44 * * * * * * * 2952 * * * 597 * * * 2255 * * * * 44
+ 0 * * * * * 0 1631 0 1397
+
+D 45 * * 2970 * * 1103 * * * * * 1689 * * * 3370 * * * * 45
+ 0 * * * * * 0 1631 0 1397
+
+A 46 0 * * * * * * * * * * * * * * * * * * * 46
+ 0 * * * * * 0 1631 0 1397
+
+N 47 * * * * * * 3207 * * * * 731 * * * * * * * 1790 47
+ 0 * * * * * 0 1631 0 1397
+
+V 48 * * * * * * * 3595 * * * * * * * * * 125 * * 48
+ 0 * * * * * 0 1631 0 1397
+
+K 49 * * * * * * * * 2970 * 778 * * * * * * 1790 * * 49
+ 0 * * * * * 0 1631 0 1397
+
+K 50 * * * * * * * 2205 2100 * * 3755 * * 3086 2666 2319 * * * 50
+ 0 * * * * * 0 2087 0 1397
+
+S 51 4203 * * * * * * * * * * * * * * 218 3540 * * * 51
+ 0 * * * * * 0 2087 0 1397
+
+V 52 * * * * * * * * * * * * * * 3322 * 343 3163 * * 52
+ 0 * * * * * 0 2087 0 1397
+
+T 53 2049 * * * * * * * * 3981 * * * * * * 799 3054 * * 53
+ 0 * * * * 1454 655 2087 0 1397
+
+T 54 * * * * * * * * * * * 4023 * * * * 92 * * * 54
+ 0 * * * * * 0 2146 0 1242
+
+D 55 * * 2741 * 4758 * * * * * * 367 * * * * 4714 * * * 55
+ 0 * * * * * 0 2146 0 1242
+
+C 56 * 163 * * * * * * * * * * * * * 3229 * * * * 56
+ 0 * * * * * 0 2146 0 1242
+
+N 57 * * * * * * * 4146 * * * 1321 * * * 3328 * * * 1172 57
+ 0 * * * * * 0 2146 0 1242
+
+I 58 * * * * * * * 80 * * * * * * * * * 4205 * * 58
+ 0 * * * * * 0 2146 0 1242
+
+D 59 * * 897 * * * * * * * * 3397 * * 1897 3328 * * * * 59
+ 0 * * * * * 0 2146 0 1242
+
+K 60 * * 4802 * * * * * 4320 * * 285 * * * * 4757 * * 4146 60
+ 0 * * * * * 0 2146 0 1242
+
+S 61 * * * * * * * * * * * * * * * 0 * * * * 61
+ 0 * * * * 0 * 2146 0 1242
+
+Q 62 * * 5487 3976 * * * * * * * * * 190 * * * * * 4740 62
+ 0 * * * * * * 2184 0 0
+
+V 63 * * * * * * * 4670 * 1864 * * * * * * * 544 * * 63
+ 71 4374 * 0 * * * 2184 1026 0
+
+Y 64 * * 1583 3379 3824 5048 3972 * * 3558 * * * * * 5487 * * * 1745 64
+ 0 * * * * * * 2184 0 0
+
+L 65 4595 * 3921 * * 3976 * 3558 * 4653 * * * * 4843 2202 1145 * * * 65
+ 71 4374 * 0 * * * 2184 1026 0
+
+T 66 * * * * * * * * * * * 4566 * * * 3488 203 * * * 66
+ 0 * * * * 0 * 2124 0 1026
+
+T 67 * * * * * * * 4374 * * * * 4740 * * * 129 * * * 67
+ 0 * * * * * * 2184 0 0
+
+C 68 * 0 * * * * * * * * * * * * * * * * * * 68
+ 0 * * * * * * 2184 0 0
+
+T 69 * * * * * * * * * * * * * * * * 0 * * * 69
+ 0 * * * * * * 2184 0 0
+
+G 70 * * * * * 2124 * * * * * 981 * * 2663 3539 5633 * * * 70
+ 0 * * * * * * 2184 0 0
+
+S 71 * * * * * * * * * * * * * * * 0 * * * * 71
+ 0 * * * * * * 2184 0 0
+
+Q 72 * * * 4812 * * 4524 * * * * * * 372 2751 * * * * * 72
+ 0 * * * * * * 2184 0 0
+
+Y 73 * * * * 3044 * * * * * * * * * * * * * * 186 73
+ 55 4730 * 0 * * * 2184 1019 0
+
+N 74 * * 1937 4730 * * * 4383 4812 * * 1268 * * * 2578 4843 * * * 74
+ 0 * * * * * * 2184 0 0
+
+G 75 * * 3577 * * 459 * * * * * 2833 * * * 4364 * * * * 75
+ 0 * * * * * * 2184 0 0
+
+I 76 1154 * * * * * * 1949 * * * * * * * * * 1778 * * 76
+ 0 * * * * * * 2184 0 0
+
+Y 77 * * * * * * 2322 * * * * 2008 * * 4880 * 4783 * * 1055 77
+ 0 * * * * * * 2184 0 0
+
+I 78 * * * * * * * 810 * * 3558 * * * * * * 1537 * * 78
+ 0 * * * * * * 2184 0 0
+
+R 79 * * * * * * * * 4374 * 2048 * * * 4653 4812 887 3412 * * 79
+ 0 * * * * * * 2184 0 0
+
+S 80 * * * * * * * 3041 4374 * * * * * * 1300 1237 * * * 80
+ 0 * * * * * * 2184 0 0
+
+S 81 3837 * * * * * * * * * * * * * * 268 3329 * * * 81
+ 0 * * * * * * 2184 0 0
+
+T 82 * * * * * * * * * * * * * * 4017 * 225 3598 * * 82
+ 0 * * * * * * 2184 0 0
+
+T 83 * * * * * * * 3558 * * * * * * * 4783 186 * * * 83
+ 0 * * * * * * 2184 0 0
+
+T 84 * * * * * * * * * * * * * * 3558 * 128 * * * 84
+ 0 * * * * * * 2184 0 0
+
+G 85 * * 2466 * * 1734 * * * * * 1062 * * * * 4670 * * * 85
+ 0 * * * * * * 2184 0 0
+
+T 86 * 1507 * * * * * * * * * * * * * 1842 1437 * * * 86
+ 0 * * * * * * 2184 0 0
+
+S 87 * * * * * * 4843 4959 * * * 1719 * * 959 3122 * * * * 87
+ 0 * * * * * * 2184 0 0
+
+I 88 5200 * * * * * * 97 * * * * * * * * * 4730 * * 88
+ 0 * * * * * * 2184 0 0
+
+S 89 4747 * 3593 * * * * * * * * 4550 * * 2140 975 3300 * * * 89
+ 0 * * * * * * 2172 0 0
+
+G 90 * * * * * 857 * * 4096 * * 1711 * * * * 4545 * * 4608 90
+ 0 * * * * * * 2183 0 0
+
+P 91 * * * * * * * 4345 * * * * 991 * * 1159 * * * * 91
+ 0 * * * * * * 2183 0 0
+
+G 92 2862 * * * * 1991 * * * * * * * 893 * * * * * 3789 92
+ 0 * * * * * * 2109 0 0
+
+C 93 * 1362 * * * * * * * 2989 * * * * * * * 1044 * * 93
+ 0 * * * * * * 2109 0 0
+
+S 94 * * * * 3746 * 3337 * 3682 3893 * * * * * 1964 4189 * * 1434 94
+ 0 * * * * * * 2109 0 0
+
+I 95 * * * * * * * 1398 * 3836 * * * * 3746 3100 1824 3703 * * 95
+ 0 * * * * * * 2109 0 0
+
+S 96 * * * * * * * * * * * 4036 * * * 1132 1051 * * * 96
+ 0 * * * * * * 2109 0 0
+
+T 97 * * * * * * 4511 * * * * * 3789 * 4041 2926 532 * * * 97
+ 0 * * * * * * 2109 0 0
+
+C 98 * 0 * * * * * * * * * * * * * * * * * * 98
+ 0 * * * * * * 2109 0 0
+
+T 99 * * * * * * * 3682 * * * * * * * * 117 * * * 99
+ 520 1724 * 3626 122 * * 2109 1126 0
+
+I 100 * * * * * * * 692 * * * * * * * * 1393 * * * 100
+ 0 * * * * * * 1927 0 0
+
+T 101 * * * * * * * * * * * * * * * * 0 * * * 101
+ 0 * * * * * * 1927 0 0
+
+R 102 * * * * * 2712 * * * * * * * * 1100 * 1393 * * * 102
+ 0 * * * * * * 1927 0 0
+
+G 103 * * * * * 390 * * * * * 2076 * * * * * * * * 103
+ 0 * * * * * * 1927 0 0
+
+V 104 * * * * * * * * * * * * * * * 3999 1393 845 * * 104
+ 0 * * * * * * 1927 0 0
+
+A 105 1597 * * * * * * * * * * * 2712 * 2076 2799 * 2879 * * 105
+ 0 * * * * * * 1927 0 0
+
+T 106 1587 * * * * * * 1969 * * * * * * * * 1804 2995 * * 106
+ 0 * * * * * * 1927 0 0
+
+P 107 * * * * * * * * * * * * 692 * * 1969 2995 * * * 107
+ 0 * * * * * * 1927 0 0
+
+A 108 2231 * * * * 1393 * * * * * * * * * 1300 * * * * 108
+ 0 * * * * * * 1927 0 0
+
+A 109 1249 * * * * * * 2995 * * * 2879 1653 * * * * * * * 109
+ 0 * * * * * * 1927 0 0
+
+A 110 343 * * * * 2799 * * * * * * 3881 * * * * * * * 110
+ 0 * * * * * * 1927 0 0
+
+C 111 * 0 * * * * * * * * * * * * * * * * * * 111
+ 0 * * * * * * 1927 0 0
+
+K 112 * * * * * * * * 1748 * * * * * 1637 1393 * * * * 112
+ 0 * * * * * * 1927 0 0
+
+I 113 * * * * * * * 193 * * * * * * * * * 2995 * * 113
+ 0 * * * * * * 1927 0 0
+
+S 114 * * * * * * * * * * * * * * * 0 * * * * 114
+ 0 * * * * * * 1927 0 0
+
+G 115 * * * * * 692 * * * * * * * * 3162 2995 2799 * * * 115
+ 0 * * * * * * 1927 0 0
+
+C 116 * 0 * * * * * * * * * * * * * * * * * * 116
+ 0 * * * * * * 1927 0 0
+
+S 117 * * * * * * * 2879 * * * * * * * 2733 487 * * * 117
+ 0 * * * * * * 1927 0 0
+
+L 118 * * * * 3561 * * 1393 * 904 * * * * * * * * * * 118
+ 0 * * * * * * 1927 0 0
+
+S 119 * * * * * * * * * * * * * * 950 1051 * * * * 119
+ 0 * * * * * * 1443 0 0
+
+A 120 0 * * * * * * * * * * * * * * * * * * * 120
+ 0 * * * * * * 1443 0 0
+
+M 121 * * * * * * * * * * 0 * * * * * * * * * 121
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME 9ac9d2aa5d496091f1a6d71517f29360
+FAM
+FILE 9ac9d2aa5d496091f1a6d71517f29360
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:13:50 2013
+LENG 92 match states, 92 columns in multiple alignment
+FILT 110 out of 170 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCEEEEEEECC
+>ss_conf PSIPRED confidence values
+98786140428677897566999961687571015567787637806697387456768874417999997225801321561673788659
+>Consensus
+mkiPKxxxtyCpxCxkHtxHkVxxykkgKxsxxaxgxRryxRxkqxGygGqxkpixxxaKxTKKixLrxxCxxCxxxxxxxxxRxkkfElxe
+>9ac9d2aa5d496091f1a6d71517f29360
+MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLREGWRAGRLEFQE
+>gi|118353575|ref|XP_001010053.1| Ribosomal protein L44 containing protein [Tetrahymena thermophila]gi|89291820|gb|EAR89808.1| Ribosomal protein L44 containing protein [Tetrahymena thermophila SB210]
+VQVPKTRKTYCKKCNSHTNHKVSQYKKSKESTHAQGRRRYDM-KQSGFGGQTKPIFRKkAKTTKKVALKFDCTTCKTKRVIPIKRCKTIVFMD
+>gi|41614978|ref|NP_963476.1| hypothetical protein NEQ183 [Nanoarchaeum equitans Kin4-M]gi|40068702|gb|AAR39037.1| NEQ183 [Nanoarchaeum equitans Kin4-M]
+MKIPSMIKTYCPYCKRHTIHIVKQVRPStKKSVLSAGKRRMERNtVGKGNHGRYSRRPitqwkrVGvKGGSKRIDLRLVCEECGKAIIKTLPRTKKFEIV
+P
+>gi|167043979|gb|ABZ08666.1| putative ribosomal protein L44 [uncultured marine crenarchaeote HF4000_APKG3J11]
+VNIPKEINRFCPKCNKHTIQKVSIYKAGKRRGTAAGERRHAL-RKKGYGGQKFPKLAKpAKTTKKVVQIFTCPECKKKTDKRGIRIRKFELVA
+>gi|118431044|ref|NP_147229.2| 50S ribosomal protein L44e [Aeropyrum pernix K1]gi|150421648|sp|Q9YF00.2|RL44_AERPE RecName: Full=50S ribosomal protein L44Egi|116062370|dbj|BAA79396.2| 50S ribosomal protein L44e [Aeropyrum pernix K1]
+MKFPKRIRTYCPRCNTHTEHRVAQYRAGKRRAMALGERRYRR-KQEGYGSQRRPEQKRfAKVTKKQVLVITCTVCGRKRPFLGIRLKRLELVD
+>gi|150402908|ref|YP_001330202.1| 50S ribosomal protein L44e [Methanococcus maripaludis C7]gi|150033938|gb|ABR66051.1| Ribosomal protein L44E [Methanococcus maripaludis C7]
+MKMKKKMNRYCPYCKKHTAHTVERAKKRKASELKWGQRQFRR-VTAGYGGYPRPLPGGAKPIKKLDLRYKCSECGKMHTRSNggFRARMFELIE
+>gi|170291146|ref|YP_001737962.1| 50S ribosomal protein L44E [Candidatus Korarchaeum cryptofilum OPF8]gi|170175226|gb|ACB08279.1| Ribosomal protein L44E [Candidatus Korarchaeum cryptofilum OPF8]
+MQVPEKINTYCPRCKKHTSHKVSLYKAGRARKLSWGQRQLER-KRRGYGGEPRGMLRRkAKTTKKVLLVLTCEECGRKVMRNLGRLAKVEIQR
+>gi|339756369|gb|EGQ39952.1| ribosomal protein L44E [Candidatus Nanosalinarum sp. J07AB56]
+VKIPKEQNRYCSDCDTYTEHTVKETTNARASPFKKKDRKRERKINKGYGGFPYEDPAhrsrgRkNPISEKKDLCYTCKDCGTAYKPqNQIRTAKLEIE-
+>gi|290559500|gb|EFD92830.1| Ribosomal protein L44E [Candidatus Parvarchaeum acidophilus ARMAN-5]
+MKLPTQVKRYCKFCKEHTLQKVVQVKGGHRGTLTAGSRRKGWNLEHGYGSTPYPMFEhakrlGik--q-SKRIDLRYKCTKCGKMTTQkRGVKAKKLEI-
+-
+>gi|332222714|ref|XP_003260515.1| PREDICTED: 60S ribosomal protein L36a-like [Nomascus leucogenys]
+ANVPKTHRTFCNKYGKRQSHKMTQNEMGKDSLYAQGKKCYKR-KPSGYCGQTEPIFRKkAKTTKKIVLRLECIEpnCRSTKVLAVKRCKDFELG-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 4055 * * * * * * * * 5933 1007 * * * * * * 1231 * * 1
+ 0 * * * * * * 3937 0 0
+
+Q 2 6268 * * 5011 * * 5146 * 1125 * * 1462 * 4219 4814 * 6472 7437 * * 2
+ 0 * * * * * * 3934 0 0
+
+M 3 5679 * * * 4064 * 6171 1645 6503 5843 2113 * * * * * * 2022 * 3621 3
+ 0 * * * * * * 3934 0 0
+
+P 4 * * * * 6268 * * * 5214 * * * 77 6393 * * * * * * 4
+ 0 * * * * * * 3934 0 0
+
+R 5 4962 * * 6246 * 6695 * * 416 * * * * * 3179 4395 5218 6503 * * 5
+ 0 * * * * * * 3934 0 0
+
+R 6 7359 * * 2600 5939 * * 6520 2207 5604 5672 4090 * 3854 3340 4907 2240 3770 * * 6
+ 0 * * * * * * 3934 0 0
+
+F 7 6268 * * 6996 2832 * 3600 2326 3375 5073 4405 * * 3897 2313 * * 3241 * 6718 7
+ 0 * * * * * * 3934 0 0
+
+N 8 6269 * * 6754 * * * 7082 1787 * 4216 2101 * 4711 1683 * 5977 5151 * * 8
+ 0 * * * * * * 3935 0 0
+
+T 9 4007 * * * 6184 * 6073 6785 4712 * 4923 5755 * * 2794 5194 646 * * * 9
+ 0 * * * * * * 3935 0 0
+
+Y 10 * * * * 1863 * 4059 * * 5633 * * * * * * * * * 633 10
+ 0 * * * * * * 3935 0 0
+
+C 11 * 63 * * * * * * * * * * * * 5667 6370 * * 6521 * 11
+ 8 * 7591 * * * * 3935 0 0
+
+P 12 5911 * 6783 * * * * * 1930 * * 5398 882 * 3935 4048 7115 7356 7298 * 12
+ 148 3360 * 729 1335 0 * 3939 1286 1000
+
+H 13 * * 4984 7285 2747 * 3613 * 1400 * * 5290 * 7326 2908 4315 7738 * * 2917 13
+ 0 * * * * 0 * 3939 0 1005
+
+C 14 6640 135 * 6485 * * * * * 6377 * * * * 5995 * * * * 4620 14
+ 0 * * * * * * 3942 0 0
+
+N 15 5474 * 3111 * * 2831 7005 * 1268 * * 2588 * 7418 3271 6077 * 7060 * * 15
+ 0 * * * * * * 3942 0 0
+
+E 16 4816 * * 3955 * 6973 7245 * 1092 * 6683 5696 * * 4118 4484 2082 4349 * * 16
+ 0 * * * * * * 3946 0 0
+
+H 17 * * * * * * 205 * * * * * * * 4939 * * * * 3322 17
+ 0 * * * * * * 3946 0 0
+
+Q 18 6395 * * 5410 * * 4232 * 4949 * 7295 7724 * 2319 7212 4542 733 5941 * * 18
+ 0 * * * * * * 3943 0 0
+
+E 19 4503 * 5543 1833 * 5441 * 3194 5816 3362 4877 6946 2787 5426 * 3498 4547 3947 * * 19
+ 0 * * * * * * 3972 0 0
+
+H 20 * 4784 * * 4850 * 383 6627 * 5954 5513 * * 3456 * * 5441 * * * 20
+ 0 * * * * * * 3972 0 0
+
+E 21 6606 * * 2459 * * * 4524 1017 * * 6466 * * 5098 3793 2985 4993 * * 21
+ 0 * * * * * * 3972 0 0
+
+V 22 4798 * * * * * * 5073 * * 5521 * * * * 5989 * 157 * * 22
+ 0 * * * * * * 3972 0 0
+
+E 23 5279 * * 1923 5952 * 6448 * 3918 * * * * * * 2038 1634 4826 * 5989 23
+ 0 * * * * * * 3972 0 0
+
+K 24 * * * 3796 * * 6009 3744 2857 3139 * 6466 * 1297 2742 * 6448 7132 * * 24
+ 0 * * * * * * 3972 0 0
+
+V 25 3792 * * * * * * * * * * 5521 * * 6009 5125 5383 1878 * 822 25
+ 0 * * * * * * 3972 0 0
+
+R 26 * * * 4481 * 6795 5682 * 558 * * * * * 2629 5174 4101 * * * 26
+ 0 * * * * * * 3972 0 0
+
+S 27 2631 * * * * 4670 4634 * 1087 * 5521 4113 4898 5565 3883 5378 4007 * * * 27
+ 21 * 6142 * * * * 3972 0 0
+
+G 28 5341 * 4596 * * 455 * * 6367 * * 6968 * * 3386 3495 * * * * 28
+ 52 4819 * 1328 733 * 0 3969 1097 1035
+
+R 29 7374 * * 6204 * * 5877 * 579 * * * 6023 4738 2276 5319 * 6700 * * 29
+ 0 * * * * 981 1019 3957 0 1099
+
+Q 30 1598 * 2266 3009 * 5354 * * 5801 * * * 6161 5376 2503 4658 4991 6688 * * 30
+ 0 * * * * * 0 3961 0 1033
+
+T 31 * * * * * 5881 * 6711 * 6762 * 4462 * * 1838 794 3996 * * * 31
+ 0 * * * * * 0 3961 0 1033
+
+G 32 4674 * * 3422 * 3220 4723 5059 3839 2552 6925 5918 2603 * 7089 3424 3126 4393 * * 32
+ 0 * * 2000 415 0 * 3961 1033 1033
+
+M 33 6471 * 6148 * 2834 6301 3644 * 5192 1481 3258 5996 6734 * 6130 4513 6820 4849 5093 3387 33
+ 0 * * * * * * 3972 0 0
+
+K 34 1019 * * * * 5956 4759 * 2876 * * 6696 5906 * 5560 3209 3076 4534 * * 34
+ 0 * * * * * * 3972 0 0
+
+W 35 3680 * * 3362 * * 5731 6381 3733 4719 * * * 1259 3811 * * * 2384 * 35
+ 0 * * * * * * 3972 0 0
+
+I 36 * * 5301 6012 * 449 * 2722 4375 * * 6160 * * * * * 6275 * * 36
+ 0 * * * * * * 3972 0 0
+
+D 37 3516 * 3514 3624 * * * * 1732 * * 3952 * 2493 3010 4600 5246 6814 * * 37
+ 0 * * * * * * 3972 0 0
+
+R 38 * * * * * 6275 * * 5523 5956 * * * 6149 132 * * * 5453 * 38
+ 0 * * * * * * 3972 0 0
+
+Q 39 * 4591 * * * * 3870 * 4375 6012 * * * 2069 766 * * * * * 39
+ 0 * * * * * * 3972 0 0
+
+R 40 * * * * 3505 * 4228 * 2639 6337 5815 * * 6275 4156 * 4668 * * 838 40
+ 0 * * * * * * 3972 0 0
+
+E 41 2946 * 1382 3050 * 5261 * * 3648 4889 * 5780 * 4898 2551 * * 8075 * * 41
+ 0 * * * * * * 3972 0 0
+
+R 42 5782 * * 4288 * 5453 6734 6139 7925 5445 4221 7100 * 7428 389 6633 * * 5886 * 42
+ 1803 * 487 * * * * 3972 0 0
+
+N 43 2886 * * * * 4858 * * 2550 * * 2477 * 3960 1616 3481 * * * * 43
+ 373 2134 * 0 * 37 5295 2892 1207 3203
+
+S 44 5952 * 5412 6393 5833 4909 * 4358 880 5881 * 5868 * 5145 4538 3432 * 3221 * * 44
+ 0 * * * * * 0 3961 0 1033
+
+G 45 * * 5354 5881 * 3054 * * 3545 3773 * 3973 5497 1100 6332 5290 3491 * * * 45
+ 0 * * * * * 0 3961 0 1033
+
+I 46 3530 * * 4981 * * 5249 2740 2084 5306 6790 5354 * 4208 3769 2289 6772 3838 * * 46
+ 0 * * * * * 0 3961 0 1033
+
+G 47 * * * * * 45 * * * * * * * * * * 6141 * 5901 * 47
+ 0 * * * * * 0 3961 0 1033
+
+N 48 * * * * 2705 * * * * 6141 * 2165 * * * * * 5901 * 755 48
+ 21 * 6141 * * * 0 3961 0 1033
+
+D 49 6147 5489 5014 * * 502 4578 * * 5930 4775 * * 5858 4363 4413 * * 5708 * 49
+ 0 * * * * 1223 807 3956 0 1081
+
+G 50 * * * * * 297 * * * * * * * * 5369 2786 * * 5901 * 50
+ 0 * * * * * 0 3961 0 1033
+
+K 51 * * * 6332 3431 * * 5901 2179 * * * * 1017 4138 5284 4815 * * 4462 51
+ 0 * * * * * 0 3961 0 1033
+
+F 52 * * * * 2354 * * * 4205 * * 5901 2418 * 3440 5804 1338 6233 * 5191 52
+ 0 * * * * * 0 3961 0 1033
+
+S 53 * * * 5497 3904 6537 * * 968 * * 6688 * * 3015 2304 * * * 4232 53
+ 0 * * * * * 0 3961 0 1033
+
+K 54 5901 * * 4358 * 6332 * * 2286 6455 * * 679 * 4569 6874 5881 6199 * * 54
+ 0 * * * * * 0 3961 0 1033
+
+V 55 * * 5361 3538 * * * 1675 3357 4224 5089 4602 * * 5801 * 6367 1623 * * 55
+ 0 * * * * * 0 3961 0 1033
+
+P 56 * * * * 1322 * * * * 3016 * * 1554 3015 * * * * * 6367 56
+ 26 5801 * 2585 263 * 0 3961 1032 1033
+
+G 57 3498 * 5881 4480 * 2396 3285 * 2631 * * * * 3809 2067 5309 * 4523 5881 * 57
+ 119 3927 6233 2322 322 * 0 3961 1190 1033
+
+G 58 * * * * * 1551 * * 1297 * * 6812 * 6009 2203 * 6641 * * * 58
+ 1771 500 * 63 4546 1224 806 3946 3100 1081
+
+D 59 832 * 2494 4167 * * * * 4375 * * 3653 * * * 4526 * 5392 * 6619 59
+ 0 * * 3000 193 937 1066 3920 1033 1092
+
+K 60 * * * 6002 * 5760 * * 150 * * * 4305 * * * 6138 * * * 60
+ 0 * * 0 * * 0 3930 1027 1027
+
+P 61 5384 * * * * 5760 * 5356 6138 * 7082 5054 1728 6073 6026 * 1350 2671 * * 61
+ 0 * * * * 0 * 3930 0 1027
+
+T 62 7436 * * * * * * 5907 * 6027 * 5673 5391 6994 * 3355 347 5225 * * 62
+ 0 * * * * * * 3957 0 0
+
+K 63 * * 6380 5380 * * * * 169 * * 5945 * * 5727 5318 6139 * * * 63
+ 0 * * * * * * 3957 0 0
+
+K 64 * * * * * * * * 314 * * 5580 * * 2517 * * * * * 64
+ 11 * 6994 * * * * 3957 0 0
+
+T 65 6922 * * * * * * 1151 4031 3650 6447 * 5059 4358 * 7321 4038 2039 * * 65
+ 0 * * * * 0 * 3954 0 1002
+
+D 66 4946 * 2427 * 6799 * 6740 * * 5605 * 2862 * * 6684 4476 3427 1161 6615 * 66
+ 0 * * * * * * 3957 0 0
+
+L 67 * 5922 * * 6994 * * 4058 * 299 6532 * 6741 5365 6372 * * 4428 * * 67
+ 0 * * * * * * 3957 0 0
+
+K 68 * 5380 * * * * * 5774 1897 5760 6925 * * 5318 841 * 5631 4080 * * 68
+ 0 * * * * * * 3957 0 0
+
+Y 69 * * * * 2898 * * 4873 * 1139 3863 * * * 5391 * * * * 1810 69
+ 0 * * * * * * 3957 0 0
+
+R 70 * * 6927 1629 * * * 6143 2689 * * * * 4148 2240 5296 2540 4890 * * 70
+ 0 * * * * * * 3957 0 0
+
+C 71 * 79 * * * * * * * * * * * * 5391 6027 * * * 6139 71
+ 38 6006 6568 1000 1000 * * 3957 1021 0
+
+G 72 6237 * 6879 4417 * 5571 * 5500 3200 5196 5091 7363 4759 4332 5242 2547 1564 3405 * * 72
+ 0 * * * * 857 1159 3964 0 1004
+
+E 73 5882 * 3404 1433 * 6834 * 5976 2113 5752 * 6595 * 5030 * 4359 3724 3668 * * 73
+ 178 3294 6176 1000 1000 0 * 3960 1344 1000
+
+C 74 * 67 * * * * * * * * * * * * * 4813 6652 * * * 74
+ 0 * * * * * 0 3936 0 1016
+
+G 75 * * * * * 1199 6871 * 1407 * * 5559 * 4657 3173 7135 * * * * 75
+ 0 * * 1000 1000 0 * 3936 1016 1016
+
+K 76 5496 6506 * * 6213 * 5274 6161 1332 7173 7153 4766 * 5067 3524 3144 3805 7445 * 2657 76
+ 0 * * * * * * 3954 0 0
+
+A 77 1665 * * 4950 7515 * * 4766 2095 6128 4289 5294 * 5757 3340 4081 4097 4388 * 8576 77
+ 0 * * * * * * 3954 0 0
+
+H 78 7153 7344 * * 5161 * 1678 4025 3209 4398 6734 6500 * 4219 2723 5820 3667 5319 4940 4331 78
+ 0 * * * * * * 3954 0 0
+
+L 79 * 6771 6802 * 5099 * 3838 4115 4311 2991 2192 4374 6989 2223 * 5957 3514 4154 * * 79
+ 0 * * * * * * 3954 0 0
+
+R 80 7179 7290 * * 6989 * 5611 5353 2324 2376 6656 * 4086 4440 1648 6361 4589 5080 * 5366 80
+ 134 3878 5584 0 * * * 3954 1190 0
+
+E 81 2294 5680 * 3053 * 5660 * * 3917 5351 * 3721 2383 * 4059 3706 3812 4114 * 6330 81
+ 20 * 6155 * * 0 * 3945 0 1038
+
+G 82 * 5170 * * 6523 1673 5898 2222 5914 2116 6450 4853 5584 5329 * 6319 4546 5482 * * 82
+ 108 3795 * 487 1803 0 * 3932 1250 1016
+
+W 83 * * * * 2702 3726 * 3069 1272 4337 6024 * 5718 * 6500 * * 4794 3536 5627 83
+ 20 * 6168 * * * * 3950 0 0
+
+R 84 * * * * * 5876 * * 3662 * * * * * 146 * * * * * 84
+ 0 * * 0 * 0 * 3932 1016 1016
+
+A 85 1948 1640 * * * * * 4374 * 3075 5127 * * * * 6940 3017 3431 * * 85
+ 27 * 5741 * * * * 3950 0 0
+
+G 86 3754 * * * * 2675 6480 * 619 * * * * 5805 4032 5158 * * * * 86
+ 0 * * 0 * 2007 413 3935 1000 1033
+
+R 87 * * 5482 * * * 2062 * 1248 * 5506 * * 6106 2171 * 4279 7191 * * 87
+ 0 * * * * * 0 3932 0 1016
+
+L 88 7111 * * * 686 * * 4466 * 2426 5584 * 6319 * * * 6106 3583 * 6830 88
+ 0 * * * * * 0 3932 0 1016
+
+E 89 * * 4829 291 * * * 4807 * * * * * 4388 6130 * * 4333 * * 89
+ 16 6483 * 1834 475 0 * 3932 1054 1016
+
+F 90 * * * * 2884 * * 2120 * 777 6276 * * * * * * 6343 5294 * 90
+ 0 * * * * * * 3950 0 0
+
+Q 91 * * * 4253 * 1433 * 5201 5085 6216 6898 6798 * 3695 * 6081 3098 1831 * * 91
+ 0 * * * * * * 3914 0 0
+
+E 92 4509 * 3522 643 * 4084 * 4751 * * * * 4771 * 4350 5542 5302 * * * 92
+ 0 * * 0 * * * 3550 0 0
+
+//
+�HHsearch 1.5
+NAME 9b972e307eb0d9de3734ffdbf33ed781
+FAM
+FILE 9b972e307eb0d9de3734ffdbf33ed781
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:09:45 2013
+LENG 245 match states, 245 columns in multiple alignment
+FILT 163 out of 1103 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEHHEEEHHHCCCCCCCCCCCCEEEECC
+CCEEEEHHEEECCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCEEEEEEEEHHHHHHHCCC
+CCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHEECCC
+>ss_conf PSIPRED confidence values
+9089998788880899608999999998717546799899999999999761485101265667997432305232762133476775563043377179
+9642330000025520267515546773899974679789999967988879999987179899999985663169998257899841005999975697
+411478667677789995813178999999889830413001039
+>Consensus
+xxxlxxanxlxvxxxxxlxxxfxxxxxxxxxxvdFxxxxxxxxINxwvxxxTxgxIxxxxxxxlxxxtxlxlxnaxxfxxxWxxxFxxxxtxxxxFxxxx
+gxxxxvxmMxxxxxxxxyxxxxxlxxxxxxveLpyxxxxsmxiilPxxxxxlxxlxxxlxxxxlxxxxxxxxxxxvxlxlPkFxixxxxdLxxxLxxlGi
+xxxFxxxadxsxisxxxxxvxxvxhxxxixvxExGtxaxaxtxxx
+>9b972e307eb0d9de3734ffdbf33ed781
+DISFKSMNKVYGRYSAVFKDSFLRKIGDNFQTVDFTDSRTVDAINKSVDIFTEGKINPLLDEPLSPDTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSP
+TEMVDVSMMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQNLTDTNFKKWSDSMDAMFIDVHIPKFKVTGSYNLVDALVKLGL
+TEVFGSTGDYSNMSNSDVSVDAMIHKTYIDVNEEYTEAAAATSAL
+>gi|226342890|ref|NP_001139707.1| serine protease inhibitor 15 [Bombyx mori]gi|195972032|gb|ACG61178.1| serpin-15 [Bombyx mori]
+--------NVYADEDNKFCKAFTQSYYKTFGGktrlVDYSDPvGAAKEINNEVKEEGSGRFKSLIsSKMIKEGAGLNFVSTYEQTIIYDDKFIFKKNVTI
+KFKS--GRKVtNVPGIAG-EGIVKYADLKDF--DAKSYELVGERgLCSYLILVPNKPDGLLGLLDKLRSpTAFGEILERGEEVCAKISILYRDLIAKVDL
+GKSARESNyLEGAFQEGgLQLRGVSQNcnNTYISSVLHEVSLKS--------------
+>gi|226342920|ref|NP_001139722.1| serine protease inhibitor 31 [Bombyx mori]gi|195972064|gb|ACG61194.1| serpin-31 [Bombyx mori]
+--------RLYlVDESIKISDDWLNFAKNYCGLtiraVPMKrNPQlTAVII--------REAISSFLP-SLNFKGDSVLLDSLDYKGLWNEAFPETRIFR
+EPFHDNSGNVIgAVDMMRT-RKRIKMTYDHTL--KATIAEIPVGHnaQYRFIFAM---GDGITEALASADIDTLIELLTNLNDTrvPIEIAIPRFIIVSE
+LDVRTLLESIGVESLWTDPMATGNITSPPASPSTFIQRVTATIKNRG----------
+>gi|308493168|ref|XP_003108774.1| hypothetical protein CRE_10956 [Caenorhabditis remanei]gi|308248514|gb|EFO92466.1| hypothetical protein CRE_10956 [Caenorhabditis remanei]
+---------------------------------------------------------------------EMIVNSINYNPIFDEMIHTFFHSKRTFYSTE
+SSPQTMGFMEW-GAHqHHF---------WKMISFECtaeKKYVNVKTF-------------SIlNGTIF----------YFQIALPTFNINAETDLASFM
+KSIGIEK------ELYDIiSEKtYRNIPSFVHKSQFELTYQK----------
+>gi|320012766|gb|ADW07616.1| proteinase inhibitor I4 serpin [Streptomyces flavogriseus ATCC 33331]
+---LGAALGLWSRSTLPVEPAWLDQLPAEAHGhLT-GDPvRDQVHLDTWAANRTQGQIDTM-PITVNDETLLVLASALTLRTDWIRSFTPGGMEAGtgPW
+R-----DMNLAGLHR-TTRLlnrvGVVDTEAG--PLTELQIIGTHGIDVHLYLgtPEASagqvltAAVGALHNRRAMvpgDHlphgtpgpglsVTRVLSV
+DGESVLRVSTVPFTVTSHHDLLNHHDLFGLGTATDTsQGHFPGISAKPLAVQAAAQAMTATFGARGFRSAAATAF-
+>gi|18568304|gb|AAL76022.1|AF466599_1 putative serpin [Aedes aegypti]
+---ISVETRLYYDKSIG---NARSVLtAKSLKPigTSFSDKrAFCEKVNSWIRNAPIKGTDNLVrDYDLNNETQAFVAGALSI--YWNTQLKS-STDQKG
+FQ---G--ENVKFLEG-SISAGYAKLDNL--KVEVVELISDKvdGVKLWLIMPDRASSIKDFNDQLSVESIRQIENGLTaqKVDVSLALPMVTIEYNSQ-
+------------------------------------------------------
+>gi|2393891|gb|AAC58237.1| serpin [Fowlpox virus]
+--------VLLIKRCYNINEKFIKDSNTIYNTdvLEFYNVrQIPRIMNKWIRSRSNNKITDIG-CHIYDNTKSIIAEAMFFTMKHESIFGSTRKDTITFY
+KYDGTSLPVEAIHA--------------------------------------------------------------------------------------
+------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+D 1 * * 561 * * 1635 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 2166 0 0
+
+I 2 4782 4757 * * * 4687 * 3337 4962 5044 3956 4882 * 4856 5056 3788 3819 1899 * 2717 2
+ 50 4882 * 543 1673 * * 6578 1118 0
+
+S 3 5924 * 3601 3306 5965 4032 * 3932 3552 5138 5861 6321 5438 3111 3487 3395 2925 4466 * 6156 3
+ 23 6004 * 612 1532 * * 7554 1255 0
+
+F 4 * * * * 3427 * * 2555 * 1201 4301 * 5654 * * * 4245 2870 6599 4994 4
+ 12 6891 * 1593 581 * * 8405 1233 0
+
+K 5 4132 * 4875 4693 6693 5029 4023 5989 2393 4044 7002 4229 * 3961 3119 3287 3933 4108 6514 5361 5
+ 0 * * * * 0 * 8516 0 1013
+
+S 6 4068 * 6946 7053 4328 * 5648 2634 * 2394 2860 5909 6831 6100 7075 3507 3043 3292 * 7158 6
+ 14 6691 * 1000 1000 * * 8604 1003 0
+
+M 7 1127 5886 7125 6993 7032 3357 * 4642 4632 4401 7101 6029 7031 5918 4397 3927 4186 4004 * * 7
+ 0 * * * * * * 8657 0 0
+
+N 8 4893 5548 5253 * 6061 5583 * * * 5177 * 1229 6734 7168 * 2140 3242 4048 * 5710 8
+ 0 * * * * * * 8657 0 0
+
+K 9 2810 * 6192 7029 4984 2657 6212 7209 3160 4631 6560 5249 * 5177 2395 2816 5642 4321 7184 * 9
+ 22 7041 7116 1000 1000 * * 8798 1009 0
+
+V 10 4673 * * * 4241 * * 1931 * 1318 4462 7141 * * 7143 7119 * 2555 * 7062 10
+ 0 * * * * 979 1022 8797 0 1131
+
+Y 11 4373 * 7235 6841 1471 * 6920 4825 * 3743 * 7162 * 6891 * 6125 * 5067 2743 2009 11
+ 23 7055 6929 0 * 0 * 8824 1003 1009
+
+G 12 3330 7287 * * 5408 5577 5538 3271 7114 2748 5625 * 6333 7167 * 5168 3284 1542 * 4186 12
+ 10 7206 * 2000 415 0 * 8819 1000 1020
+
+R 13 3583 7096 2006 3444 * 4849 5364 6041 4451 5507 6431 4126 6000 3483 3156 3094 7168 * * 5946 13
+ 9 * 7273 * * * * 8830 0 0
+
+Y 14 4231 * 3923 3016 * 4756 * 6694 2454 6920 6523 3661 3707 3381 3151 3631 4313 * * 6191 14
+ 0 * * * * * 0 8831 0 1013
+
+S 15 4392 6391 3124 4079 7222 2297 6096 * 3773 4821 * 3329 4946 5124 3752 3135 3831 7211 7069 * 15
+ 64 5399 5656 1585 585 * 0 8831 1213 1013
+
+A 16 4902 6922 6013 5179 2894 7074 6236 3142 7140 1866 6045 6433 6071 6261 4905 4273 4521 3662 * 3280 16
+ 109 4308 5507 1286 762 0 * 8829 1568 1325
+
+V 17 6908 6868 4540 3365 * 4099 6197 6908 2930 5357 7182 3999 2794 3891 3364 3714 3643 3940 * 7046 17
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+//
+�HHsearch 1.5
+NAME 9c68b86897cc76a533b3376c5680b606
+FAM
+FILE 9c68b86897cc76a533b3376c5680b606
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:24:46 2013
+LENG 130 match states, 130 columns in multiple alignment
+FILT 63 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEEEE
+EEEECCCCCCHHHEEECCCCCEECCCCCCC
+>ss_conf PSIPRED confidence values
+9445608999668999999978998899998877545788520022431376436558988739999995667777676989899876099234999899
+998225574557719678867885350469
+>Consensus
+xxcxlxGxWxNelGSxmxIxxxxxGxixGxYxTxvxxxxxxxxxxGxxxxxpxxgxxxxxxxtfxFsVxWxxxxxxxxStTxWtGqcxxxxxexlxTxWx
+lxxxxxxxdxWxatxvGxDxFtrxxxxxxx
+>9c68b86897cc76a533b3376c5680b606
+AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPGRGDSVGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWL
+LTSGTTEANAWKSTLVGHDTFTKVKPSAAS
+>gi|76809171|ref|YP_333887.1| putative exported avidin family protein [Burkholderia pseudomallei 1710b]gi|167719107|ref|ZP_02402343.1| putative exported avidin family protein [Burkholderia pseudomallei DM98]gi|167815293|ref|ZP_02446973.1| putative exported avidin family protein [Burkholderia pseudomallei 91]gi|167845243|ref|ZP_02470751.1| putative exported avidin family protein [Burkholderia pseudomallei B7210]gi|167902241|ref|ZP_02489446.1| putative exported avidin family protein [Burkholderia pseudomallei NCTC 13177]gi|76578624|gb|ABA48099.1| putative exported avidin family protein [Burkholderia pseudomallei 1710b]
+-----IGSWLNELGSTMtIASISGTGAITGTYVSPSGTTGQTFSLSGWFYAAPPANNGLDQVTLVTFSVNWNNTAARYNSITTWSGLCQitNN-VPTITA
+LYYYSNAF-AQYSWKHVNVGQDIFHPIAP----
+>gi|62909782|emb|CAI84979.1| single chain avidin precursor [synthetic construct]
+-KCSLTGKWTNDLGSNMTIGAvNSRGEFTGTYITAVTATSNE------IKESPLHGTqntinkrtqptfgftvnwkfseggsgsgsgsGSgRTQPTFGFT
+VNWK----FSESTTVFTGQCFIDrnGKEVLKTMWLLRSSVnDIGDDWKATRVGINIFTRLRTQ---
+>gi|163759983|ref|ZP_02167067.1| hypothetical conserved protein [Hoeflea phototrophica DFL-43]gi|162282941|gb|EDQ33228.1| hypothetical conserved protein [Hoeflea phototrophica DFL-43]
+------SNWVNQSGSVAQFvftpsptQPQTY-EVSGNYINnaqGTGCKGTPYPLSGAYYS---------GNQIISFSVVWSNASANCQSATGWTGYFdFS
+GSQAVLKTDWNLAFYSGST---PAIQQGQDDFMQSVAT---
+>gi|115893467|ref|XP_001199294.1| PREDICTED: similar to fibropellin Ia [Strongylocentrotus purpuratus]gi|115930644|ref|XP_001178415.1| PREDICTED: similar to fibropellin Ia [Strongylocentrotus purpuratus]
+--------------------------endvdecasfpclngaicsnQENQFVC-------------------tcVLG-----------------------
+----WTGiNCQi-DIDECASDPCQNGAL--CSDlINRYECQCLPGWTgvNYigeltrdsdm------
+>gi|115893457|ref|XP_781372.2| PREDICTED: similar to fibrosurfin [Strongylocentrotus purpuratus]gi|115930654|ref|XP_001178907.1| PREDICTED: similar to fibrosurfin [Strongylocentrotus purpuratus]
+-YCDLEGVWYNELNDRITITGTTTGMLLGDYKDSVELLTG------YSAATVVVGYaNrNCDFPSFGFVVTRDN----GLSTTSWSGQCHlCDGEEVLYT
+TWTNTQRVtTCAEVKRATLIGQDKWTRYQQST--
+>gi|90423149|ref|YP_531519.1| avidin/streptavidin [Rhodopseudomonas palustris BisB18]gi|90105163|gb|ABD87200.1| Avidin/streptavidin [Rhodopseudomonas palustris BisB18]
+-QAQVSWTWTNQYGSVLAITTynQSNGAITGTYTNKAAgscDDGKPQAAAGWLAA-------GNTGSAISFSVNFA----GCSSTTVWTGQLNSN--AGF
+QGLWLLSLAE--PVAWNGISAGADTFTFSS-----
+>gi|256395584|ref|YP_003117148.1| hypothetical protein Caci_6456 [Catenulispora acidiphila DSM 44928]gi|256361810|gb|ACU75307.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
+----WVGTWHNQYGSRLTITDESDHRIQGSFRTALGDSAFA----G--EEAEISGIHQGECITFNFSTS----SATGESICSFTGLLR---EGKLQTLWH
+VVSDSavKppapgeqaqlMKLPwAHAVLTNADTFTRD------
+>gi|73539298|ref|YP_299665.1| hypothetical protein Reut_B5476 [Ralstonia eutropha JMP134]gi|72122635|gb|AAZ64821.1| hypothetical protein Reut_B5476 [Ralstonia eutropha JMP134]
+---SIAGTWRNEYGSLMTLSVgDgvAPGALRGLYRSSTGSVGS-YLVAG-FAAAQAVS--LDHGQPVALSICWHSLGGeQadpsWQWTSGLSGQLSvVDG
+EEVLTLSHL------------------------------
+#
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+
+//
+�HHsearch 1.5
+NAME 9c7b8409c5da2a6bc10d796287eb4c1f
+FAM
+FILE 9c7b8409c5da2a6bc10d796287eb4c1f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:25:45 2013
+LENG 160 match states, 160 columns in multiple alignment
+FILT 139 out of 1041 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCHHHCCEEEECCCHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCCEEEEEC
+CCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9899996898866499999999984981999779977856799999836725540589829999999972598899997478853110056899999989
+997798999998657974999638999775369999999999999972555455676769
+>Consensus
+xxxvvldxvxxpxNvGxixRtaxxfGvxxvixxxxxxxxxxxxxxrxsxgaxxxxxixxxxxxxxxlxxlkxxxvxxxxxxxxxxlxxxxxxxxxxlvxG
+xExxGlsxxxlxxxxxdxxvxIPxxgxxxSLNvsxAxaIxlyexxrqxxxxxxxxxxxxx
+>9c7b8409c5da2a6bc10d796287eb4c1f
+MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFG
+PETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPEVK
+>gi|335036871|ref|ZP_08530186.1| RNA methylase [Agrobacterium sp. ATCC 31749]gi|333791695|gb|EGL63077.1| RNA methylase [Agrobacterium sp. ATCC 31749]
+--VLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLSeeGFAIWGLSPDGKTeI-RDI-Prs-ERM
+ALVIGTEGEGLPQSVLSRF--QT-ARIAQSPQLDSLNAGTASGLALYQMAG--------------
+>gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638]gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM 2638]
+-FTLIIDNVWDPHNVSAILRSCDAFGIyGIHLYYTVSqWPE---LAKKSSASGKKWVERTKHTDPVKMVGGLRdqGYQVLRTGFsETARPLMDFDLSKPS
+AVILSNEHSGTAPELAELV--PDEVYIPMQGMIQSFNVSVAAALILYHGFSQRFAKGMYDNPS--
+>gi|218282592|ref|ZP_03488830.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]gi|218216463|gb|EEC90001.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
+-FLCYIDGVEDPYNLGSISRTLYASGCDAMILPKRDWSFAEQTILKASAGAYEKLPIYFVDADEELVNYCKKnnLPILCAHRKDAVGLYDYTFESDFCLC
+LGGALRGLSSTITAAS--KQNIVVEYGRDfRNALDSASAAAVFSFEILRQKKV----------
+>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62]gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
+--VIILVDPQLGENIGMVARAMWNFNLtQLRLVNPRDGWP-SEKARSSSANADCVIdSVRVFSNLKEAIADL--HFIYATTARNRNnfkSVLAPkeaaiV
+LnerifsGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSI-----------
+>gi|198452347|ref|XP_001358733.2| GA15007 [Drosophila pseudoobscura pseudoobscura]gi|198131892|gb|EAL27876.2| GA15007 [Drosophila pseudoobscura pseudoobscura]
+---VVASLIDKLPNLGGLARTCEVLGVQTLALGNKAQA-GKSDFTNLSMTAEKTLNIIELkpSCIAAFLMekQMEGFRVVGAEQTAhSVSFANFKFPKKC
+VLLLGHEKHGIPADLIGFL--DYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHFF----------
+>gi|71405533|ref|XP_805376.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]gi|70868764|gb|EAN83525.1| hypothetical protein, conserved [Trypanosoma cruzi]
+--ILVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGAHFQKAVPIYTlkeeDGDNVYGMLNhivqrnNmSTVCFTPIDDDTektnt
+gkapnvvlsssvahagtfereALSEYchrCFttegTKGQLLIAGPNHKR--NSLRRW---SKRITGPVTqlllDEVTQTDSLVALSVVIHAL-RPHG---
+--------
+>gi|294901665|ref|XP_002777464.1| hypothetical protein Pmar_PMAR024217 [Perkinsus marinus ATCC 50983]gi|239885101|gb|EER09280.1| hypothetical protein Pmar_PMAR024217 [Perkinsus marinus ATCC 50983]
+--LIMLDGVKYPGNAGNVLSNAGKLGCSAVLLGRSRrsSQPYQQDFALSALcsssTVRrGGIPLVLNVHCVDTIHLLREeyaYRVILIENKEvavdhGLP
+FIDLSceasaraeIsTPRVLFVGGGELEGVGPLIPKVA--DAILSIPTVFdHHHSYNVCTAMTLVMFERYRF-------------
+>gi|167630255|ref|YP_001680754.1| hypothetical protein HM1_2187 [Heliobacterium modesticaldum Ice1]gi|167592995|gb|ABZ84743.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
+----------------DISRSATTYDVAgYFVIHPHQAQQRlVGEIlryWMEGYGaeynpdrreALERL--KVTATLEEAMAVIEEkegrrPKIITTDAR
+TYdnsVGYRQMRerfvaEEGPWLLLFGT-GFGMEREMMLQA--DYIL-YPVWgrGSYNHLSVRAAAAIILDRLL---------------
+>gi|302348084|ref|YP_003815722.1| RecB-family nuclease-like protein [Acidilobus saccharovorans 345-15]gi|302328496|gb|ADL18691.1| RecB-family nuclease-like protein [Acidilobus saccharovorans 345-15]
+-VIPVIHNTSSVQRLVDMARIVLSMNIdLLVATKVYGAAaqSGIAEAFRLLLKA--GKGLVVLPELKDAVETYDGTQVFLVDKEHAAELVDPLsgdftag
+SNSPLMLVFNGSDAPFSPQELSLG---KPIYIKGlSYRAGST---AEASLLLYGILR--------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 2992 0 0
+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
+G 48 1828 6487 * 4903 * 3168 7101 * 7203 5759 5551 6405 * * * 1412 3400 5247 * * 48
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+
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+H 52 3844 7165 4172 3314 6206 * 2925 3452 5502 2509 4220 5622 7026 4433 5480 4496 7218 4212 4973 4443 52
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+
+F 66 1742 4130 6201 * 2522 6201 * 4193 * 3064 5236 6909 * 6251 * 4935 4261 3262 * 4992 66
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+K 71 4552 * 5659 4816 6711 5091 5881 6177 1534 5492 * 4378 5306 4879 2170 3373 5325 6169 * * 71
+ 662 1580 4896 1182 838 1911 446 7792 3826 2290
+
+P 72 5159 5466 4567 3084 * 1687 * * 2923 5461 6249 3660 3717 3504 5392 5553 5477 * * * 72
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+
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+
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+
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+
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+
+//
+�HHsearch 1.5
+NAME 9f519c37964061e00a9e9906f774552e
+FAM
+FILE 9f519c37964061e00a9e9906f774552e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:27:18 2013
+LENG 79 match states, 79 columns in multiple alignment
+FILT 111 out of 161 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCEECCCCCCCCEEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCC
+>ss_conf PSIPRED confidence values
+9857757567723886279999839999975786766499999660500068848988808997289870468989999
+>Consensus
+mxxxxixYSxkYxDdxyeYRhViLpkexxkxvpkxxLlsExEWRxLGIqqSxGWxHyxxhxpEphiLlFRRpxxxxxxx
+>9f519c37964061e00a9e9906f774552e
+MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEPHILLFRRPLPKKPKK
+>gi|118375604|ref|XP_001020986.1| Cyclin-dependent kinase regulatory subunit family protein [Tetrahymena thermophila]gi|89302753|gb|EAS00741.1| Cyclin-dependent kinase regulatory subunit family protein [Tetrahymena thermophila SB210]
+MP-KFpkeIEYSDTYNDDAYFYRNVRLPQDLYKKIPKGKIMTEDVWRSLGIKSSKGWQHFYVYKPEPFIIMLRKPVNFQN--
+>gi|145478429|ref|XP_001425237.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124392306|emb|CAK57839.1| unnamed protein product [Paramecium tetraurelia]
+--------SQDFEDDTHIYRIIRLGRESVRLMQEFKwekkLLKEEEWRRLRVYQRRGWLHYAIFEKEPYVLLFKRKITKNK--
+>gi|326427105|gb|EGD72675.1| hypothetical protein PTSG_04406 [Salpingoeca sp. ATCC 50818]
+--SSGIVYVERHRDDQFQYRTVILPGEMGQGLPLHRALTEKECRRLGIRQSKGWTHCLIRKKDPNSLLFRRKLD-----
+>gi|71034137|ref|XP_766710.1| hypothetical protein [Theileria parva strain Muguga]gi|68353667|gb|EAN34427.1| hypothetical protein TP01_1189 [Theileria parva]
+---NNIQYSPKITHSNCQIRCVTLPREHPVLVGgldgyGTRLLSESEWRKLGIKMSKGWTHSGYSPYESHILIFQL--------
+>gi|221485644|gb|EEE23925.1| conserved hypothetical protein [Toxoplasma gondii GT1]
+---GDVYYSPRYSDERYTYRHVILSRGVRKeaeklasTMP-DGLLTEDMFiHCLGIALSPGWTHFMCFNRKLKELILRRPREDDN--
+>gi|294881882|ref|XP_002769521.1| hypothetical protein Pmar_PMAR003251 [Perkinsus marinus ATCC 50983]gi|239873027|gb|EER02239.1| hypothetical protein Pmar_PMAR003251 [Perkinsus marinus ATCC 50983]
+---DENEYSDKYMDDTYEYRHVILNKPTYRMLQrsvrgysASTILEENEWRV----------------------------------
+>gi|221054734|ref|XP_002258506.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]gi|193808575|emb|CAQ39278.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]
+---GPVCYSALYRDDKYVYRHIILSDNVRQyaesKVRKtNAFLTEHCIvNELQIDIGKGWKHFMIYDGKIRELILRKVLTA----
+>gi|237841603|ref|XP_002370099.1| hypothetical protein TGME49_023120 [Toxoplasma gondii ME49]gi|211967763|gb|EEB02959.1| hypothetical protein TGME49_023120 [Toxoplasma gondii ME49]
+-------HSLKYEDNEYEYKDVTLTKKydlyreQLKKNPR-KFIDEDYmYNVLQLQQTPGWEQYYIY-------------------
+>gi|288817839|ref|YP_003432186.1| hypothetical protein HTH_0521 [Hydrogenobacter thermophilus TK-6]gi|288787238|dbj|BAI68985.1| hypothetical protein HTH_0521 [Hydrogenobacter thermophilus TK-6]
+----------RCEFDLFYYRHLWLTPYL-----------------LAVQQVKGWVLYEVLKYEPNLLIVRE--------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 344 3359 3126 1220 809 * * 2691 1084 0
+
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+ 988 2392 1713 613 1531 260 2601 2795 1170 1133
+
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+ 131 3522 * 1080 924 124 3600 2669 1069 1347
+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 0 * * 3322 152 611 1535 3596 1014 1036
+
+P 74 5714 * 2545 4818 * 2356 5945 * 4946 5144 * 3013 2863 6333 * 4589 2422 * * * 74
+ 13 6827 * 0 * * 0 3497 1000 1000
+
+K 75 3012 * 3351 6368 4025 3203 * * 2509 * 7172 4145 4279 6691 * 4979 2349 * * 3888 75
+ 206 3279 5062 2414 300 0 * 3425 1120 1000
+
+K 76 4168 * 1945 * * 4263 * 6367 3203 * * 2028 4191 3223 4167 4783 6273 * * * 76
+ 0 * * * * 0 * 3268 0 1033
+
+P 77 4042 5625 6190 5568 * 5427 * 3101 3717 4599 5635 2975 2147 4072 4207 4673 4026 4649 * * 77
+ 0 * * * * * * 3128 0 0
+
+K 78 * * * * * * * * 1579 * * * 1318 2300 * * 4027 * * * 78
+ 0 * * * * * * 2344 0 0
+
+K 79 2446 * * 2365 * * * * 1206 * * 2406 * * * * * * * * 79
+ 0 * * 0 * * * 2165 0 0
+
+//
+�HHsearch 1.5
+NAME a0a16d5fe9c52ade8dbd14d530daeeb8
+FAM
+FILE a0a16d5fe9c52ade8dbd14d530daeeb8
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:57:43 2013
+LENG 72 match states, 72 columns in multiple alignment
+FILT 103 out of 199 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEECC
+>ss_conf PSIPRED confidence values
+975568874755676268999983677567888675232999999999976098898897356513688519
+>Consensus
+xxxxxpxxxxxFEGxEKxLEIxfxxxxxxxxxxxxgLRxixrxxWxxxLxxvxCxIlSxxsnxxxDAYvLSE
+>a0a16d5fe9c52ade8dbd14d530daeeb8
+MEMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE
+>gi|340054298|emb|CCC48594.1| putative S-adenosylmethionine decarboxylase [Trypanosoma vivax Y486]
+--ARFdPGPQPSFEGPEKRLEIIM---RFLEVTHVDGLHALDDKVWEEVVSAVNAKIVSKESNEHIRSYVLTE
+>gi|149618484|ref|XP_001514093.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
+--------------meKNHSYSVCLGtcnstvdRPF--ALQSV-ILGRGSSFEWDKLLENVHCLIISVTKTDKQEAYVLSE
+>gi|167623734|ref|YP_001674028.1| adenosylmethionine decarboxylase [Shewanella halifaxensis HAW-EB4]gi|167353756|gb|ABZ76369.1| Adenosylmethionine decarboxylase [Shewanella halifaxensis HAW-EB4]
+---------MFFEGSEKKIELQL-------NSSAVSLRSLPHSFWQQALSLAQAEILSSLSNSHCDAYVLSE
+>gi|196006337|ref|XP_002113035.1| hypothetical protein TRIADDRAFT_56768 [Trichoplax adhaerens]gi|190585076|gb|EDV25145.1| hypothetical protein TRIADDRAFT_56768 [Trichoplax adhaerens]
+------TQQAFFEGTEKLLEIWFASSDSTQstqDGRVHDLREISKDDWSELLTYANCSILSEVSSNDITAYLLSE
+>gi|331247566|ref|XP_003336411.1| S-adenosylmethionine decarboxylase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]gi|309315401|gb|EFP91992.1| S-adenosylmethionine decarboxylase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
+-----PANGPPFEGPEKLLELWFAPSADqvpiAsnvgtragllrSGPKFTGLRTVNHPLWHAMLDQVKCKVLSVIESEHVDAFLLSE
+>gi|90408155|ref|ZP_01216324.1| S-adenosylmethionine decarboxylase proenzyme, putative [Psychromonas sp. CNPT3]gi|90310767|gb|EAS38883.1| S-adenosylmethionine decarboxylase proenzyme, putative [Psychromonas sp. CNPT3]
+---------MFYEGREKRLEIIT---------QGINLLDFPVDFWHAMVQQAGACILGEIKENNIKAFILSE
+>gi|119576475|gb|EAW56071.1| hCG17429, isoform CRA_a [Homo sapiens]
+-------AVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSE----------------------------
+>gi|156081893|ref|XP_001608439.1| S-adenosylmethionine decarboxylase-ornithine decarboxylase [Plasmodium vivax SaI-1]gi|148801010|gb|EDL42415.1| S-adenosylmethionine decarboxylase-ornithine decarboxylase, putative [Plasmodium vivax]
+----------VFEGIEKRIVIKLRKECFEEKKNISSLFDISRELWEEKLKYIGCSIVSEIEEdvqapaeERCRVYLLSE
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 652 * * * * * * 1460 * * 1
+ 0 * * * * * * 1658 0 0
+
+E 2 1636 * * 1667 * * * * * * * 1460 * * * * * * * * 2
+ 0 * * * * * * 1658 0 0
+
+M 3 2756 * * 3443 * * * 3897 2488 * 2030 * * * * 2836 * 2947 * * 3
+ 0 * * * * * * 3017 0 0
+
+D 4 1780 * 2909 3076 * 3697 * * * * * 3443 * * 2145 * * 4012 * * 4
+ 154 * 3305 3459 138 * * 3017 1001 0
+
+L 5 4227 * * 3108 2197 2336 * * * 3231 * * * * 3037 3128 * * * 3800 5
+ 714 1550 4357 0 * 0 * 3031 1328 1000
+
+P 6 * * 3847 * * * * * * * * 3778 491 * * 3550 * 4045 * * 6
+ 0 * * * * * 0 3576 0 1000
+
+V 7 4295 * 2828 4525 * 3516 3533 * 4516 4673 2714 3533 5179 * * 4246 3681 3171 * * 7
+ 0 * * 4391 70 0 * 3942 1075 1000
+
+S 8 2558 * 5010 5494 * 3361 4067 * * * 4316 4411 5317 3035 * 1740 4194 * * 5534 8
+ 0 * * * * * * 4198 0 0
+
+A 9 3078 * 4251 4065 * 3203 5623 * 5892 * 5491 5729 3758 3591 * 3011 2116 3820 * * 9
+ 62 5173 6138 2893 209 * * 4342 1082 0
+
+I 10 4187 5398 3853 4360 6451 4974 3207 3311 * 6702 2471 3871 3382 5189 5768 3868 5345 * 5240 4980 10
+ 95 4260 6451 2585 263 0 * 4585 1127 1000
+
+G 11 2277 6039 * 6279 1543 2699 5403 6811 * * * 5336 4261 * * 3714 6251 4693 * 5011 11
+ 46 4988 * 2909 206 0 * 4623 1068 1023
+
+F 12 * * * * 130 * * * * * * * * * * 6583 * * * 3725 12
+ 0 * * * * * * 4631 0 0
+
+E 13 * * * 74 * * * * * * * * * * * 4320 * * * * 13
+ 0 * * * * * * 4631 0 0
+
+G 14 * * * * * 74 * * * * * 4320 * * * * * * * * 14
+ 0 * * 1000 1000 * * 4631 1088 0
+
+F 15 3341 4512 * * 3801 * * 5377 4940 * * * 1575 6366 5234 3298 3239 2950 * 5807 15
+ 0 * * * * * * 4730 0 0
+
+E 16 * * * 115 * * * * * * * 4940 * * * * * 4512 * * 16
+ 0 * * * * * * 4730 0 0
+
+K 17 * * * * * * 4940 * 115 * * * * * 4512 * * * * * 17
+ 0 * * * * * * 4730 0 0
+
+R 18 * * * * * * * 5001 2689 1324 * 6331 * * 1601 4940 4655 * * * 18
+ 0 * * * * * * 4730 0 0
+
+L 19 6907 * * * * * * 3012 * 430 5873 * 4512 * * * * 4974 * 4940 19
+ 0 * * * * * * 4730 0 0
+
+E 20 * * 4911 280 * * * * * * * * * 5764 * 3313 * 5377 * * 20
+ 0 * * * * * * 4730 0 0
+
+I 21 6878 * * * 6010 * * 950 * 2736 4512 * * * * * * 1918 * * 21
+ 0 * * * * * * 4730 0 0
+
+S 22 4302 4006 3589 4049 * 6285 * 3307 4557 6864 * * * 7176 4518 6085 4722 3488 1372 * 22
+ 0 * * * * * * 4730 0 0
+
+F 23 * * * * 614 * * 5764 * 3292 3826 * * * * * 5325 3056 6591 * 23
+ 563 * 1630 * * * * 4730 0 0
+
+V 24 2386 6079 4614 3539 4120 3690 4113 * 4297 6021 * * 4149 6643 3443 3171 4966 5014 5305 4313 24
+ 194 3349 5169 3378 146 4230 79 4330 1255 2310
+
+E 25 4247 * 4396 2586 * 4580 * 5488 3865 4848 * 6417 1845 * 3048 3129 * * 5061 6559 25
+ 157 6559 3435 0 * * 0 4339 1000 2303
+
+P 26 5869 * 5924 4103 * 4812 4569 4789 4101 * * 4877 2022 4351 6678 1865 3986 4075 * * 26
+ 143 5168 3906 1000 1000 1640 558 4273 1024 2511
+
+G 27 3212 4036 3399 6462 4606 4883 6309 * 5185 5294 6717 5227 2864 4742 3065 2458 6482 5071 * 5005 27
+ 490 3541 2306 2274 334 * 0 4389 1169 2180
+
+L 28 6037 * 4129 3440 2757 4427 5906 2878 5993 3182 * * 3051 * 5403 3072 5708 4024 * 5749 28
+ 605 3887 1862 1608 574 4649 59 4191 1093 2705
+
+F 29 4325 * 4290 3791 2075 4290 5616 * 5419 2268 * 5773 3617 * * 5403 3240 5065 * 5178 29
+ 283 2795 4888 2183 359 1848 469 3976 1172 3061
+
+A 30 2691 * 3439 2587 * 2774 * 5226 3332 * * 4026 4055 5045 5962 2772 * * * * 30
+ 193 3471 4846 1600 578 346 2229 4291 1158 2568
+
+D 31 4200 5669 2893 3008 * 4318 * 7096 3532 4847 * 3175 3964 6185 6609 2539 4315 3893 * * 31
+ 30 7124 6239 3585 126 2478 285 4638 1000 1394
+
+P 32 3886 5316 5953 4118 5687 2844 6699 4084 3507 4332 7101 6813 2855 3905 6102 3798 3215 4536 * 6612 32
+ 195 3261 5513 2058 396 161 3245 4651 1465 1370
+
+N 33 3705 6603 4833 3487 * 3132 3353 * 3422 4214 * 3191 3805 5128 4574 3395 3592 * * * 33
+ 179 3096 * 2534 273 1555 600 4716 1475 1087
+
+G 34 3302 6113 4103 3644 5213 2569 5905 5034 4065 6798 6570 3454 4207 5752 4069 3351 6014 3795 6063 * 34
+ 70 * 4397 * * * 0 4726 0 1043
+
+K 35 4651 5450 4553 3804 5798 3804 6796 4896 3200 4283 3705 4713 4525 4224 2828 3616 4697 4669 * 5733 35
+ 23 * 5980 1000 1000 174 3136 4631 1043 1229
+
+G 36 * * 2770 6655 * 1006 * 4943 5982 * * 3794 * * * 2386 4879 * * * 36
+ 69 4412 * 462 1869 1845 470 4716 1171 1069
+
+L 37 5101 5513 * * * * * * * 76 * * * * * * * * * * 37
+ 0 * * * * * 0 4715 0 1038
+
+R 38 * * * * 5374 4946 5397 * 4741 3680 6429 5872 * * 367 * * * * * 38
+ 0 * * * * * 0 4715 0 1038
+
+S 39 2294 6690 3815 3412 * 6679 7082 * 3911 4211 * 3900 * 4275 4025 2237 4058 4993 * * 39
+ 44 5068 * 0 * 0 * 4715 1067 1038
+
+L 40 6188 * * * 5355 4949 4716 1303 * 1647 * * * * 5996 * * 2725 * * 40
+ 0 * * * * * * 4731 0 0
+
+S 41 6647 * 3487 4913 * 2915 * * 5447 * * 5392 1479 * 6295 2242 3246 * * * 41
+ 0 * * * * * * 4731 0 0
+
+K 42 4662 * 3264 5575 5955 7124 5237 6872 3235 3972 5050 * * 5231 1221 4576 7037 4744 * 4861 42
+ 8 7484 * 0 * * * 4732 1000 0
+
+A 43 2867 6795 2209 2118 4445 4791 6339 * 5671 * * 5166 5378 4684 * 2675 5510 * 5387 * 43
+ 0 * * * * * * 4732 0 0
+
+Q 44 5043 * 4135 3040 2770 6162 * 5912 3239 4951 5705 * * 2714 5619 5142 3544 2685 * 6128 44
+ 0 * * * * * * 4732 0 0
+
+L 45 * * * * * * * 4461 * 2081 * * * * * * * 6376 521 6747 45
+ 0 * * * * * * 4728 0 0
+
+D 46 6078 7229 1488 2191 * * 4341 5973 4733 * * * * 2968 5313 4383 6176 3646 * 7463 46
+ 0 * * * * * * 4728 0 0
+
+E 47 3234 * 3644 2035 * 4249 * 6726 3017 5254 7463 4473 * 3965 4282 3508 3793 4980 * * 47
+ 0 * * * * * * 4728 0 0
+
+I 48 4942 6571 * * 5851 6672 * 1937 5375 2047 1961 * * * * * * 2780 * * 48
+ 0 * * * * * * 4727 0 0
+
+L 49 6280 5511 * * * * * 6147 * 447 5040 * * * * * * 2418 * * 49
+ 0 * * * * * * 4727 0 0
+
+G 50 2882 7017 2188 3203 * 4133 * * 2178 * * 4486 * 4817 4315 4409 3774 * * * 50
+ 0 * * * * * * 4727 0 0
+
+P 51 3090 4814 6701 4157 7875 * 5038 3681 5116 2041 6107 4394 3385 3910 5511 3274 7069 7098 * 4945 51
+ 0 * * * * * * 4727 0 0
+
+A 52 1217 5079 * * * 6334 * 4299 * 6242 * * * * * 5281 * 1190 * * 52
+ 0 * * * * * * 4727 0 0
+
+E 53 6978 4338 3367 2926 * 3996 3448 * 2493 * * 2527 * 3524 3350 5397 * * * * 53
+ 0 * * * * * * 4727 0 0
+
+C 54 2338 389 * * * 5374 * * * * * * * * * * 6116 * * * 54
+ 0 * * * * * * 4727 0 0
+
+T 55 6519 4774 5866 1915 6504 * 4883 * 2341 4288 * * * 4515 5870 4046 2137 6013 6311 * 55
+ 0 * * * * * * 4727 0 0
+
+I 56 * * * * * * * 311 * * * * * * * * * 2368 * * 56
+ 0 * * * * * * 4727 0 0
+
+V 57 * 6011 * 5143 * * * 2376 * 1110 * * * * * * * 1735 * * 57
+ 0 * * * * * * 4727 0 0
+
+D 58 5918 * 4002 6411 * 4994 4930 * * * * 5758 * * 6011 302 * * * * 58
+ 0 * * * * * * 4727 0 0
+
+N 59 4981 6280 * 3200 4824 * 4621 4935 2843 6286 4195 6983 * 3633 4152 2595 4523 2641 * 5871 59
+ 0 * * * * * * 4727 0 0
+
+L 60 5641 6166 * 3645 5405 * * 2106 3103 2411 4355 6685 * 6411 5240 4502 3286 3601 * * 60
+ 0 * * * * * * 4727 0 0
+
+S 61 4524 5245 * 3344 6147 5220 4794 * 2734 6311 * 5705 * 6706 3599 1160 4919 * * * 61
+ 23 6011 * 0 * * * 4727 1021 0
+
+N 62 6468 * 6666 4243 * 3934 5877 * * 5008 * 928 * * * 2915 2694 * * * 62
+ 35 5375 * 2807 222 * * 4727 1047 0
+
+D 63 3920 * 1663 1786 * 4812 5801 * 3996 * * 4743 5190 4337 6848 4118 5578 6571 * * 63
+ 0 * * * * * * 4727 0 0
+
+Y 64 4510 6138 2562 3573 4377 * 2603 7027 3001 5689 * 5270 * 3899 4768 4537 5448 5409 * 3255 64
+ 0 * * * * * * 4727 0 0
+
+V 65 5932 2687 * * 3509 * * 2580 * 2383 2862 * * 3910 * 5758 6742 2897 * 6011 65
+ 0 * * * * * * 4727 0 0
+
+D 66 * * 466 4336 * * 6925 6578 5216 * * 6011 * * 3382 * 4511 5296 * * 66
+ 0 * * * * * * 4727 0 0
+
+S 67 595 6439 * * * * * * * * * * * * * 1725 * 5375 * * 67
+ 0 * * * * * * 4727 0 0
+
+Y 68 * * * * 3127 * * * * 6177 * * * * * * * * * 198 68
+ 0 * * * * * * 4727 0 0
+
+V 69 * * * * * * * 3498 * 1256 * * * * * * * 1021 * * 69
+ 0 * * * * * * 4727 0 0
+
+L 70 * * * * * * * 5374 * 35 * * * * * * * * * * 70
+ 0 * * * * * * 4727 0 0
+
+S 71 * * * * * * * * * * * * * * * 71 4382 * * * 71
+ 0 * * * * * * 4727 0 0
+
+E 72 4608 * * 60 * * * * * * * * * * * * * * * * 72
+ 0 * * 0 * * * 4727 0 0
+
+//
+�HHsearch 1.5
+NAME a1369bdee466c1364c07095750be3efc
+FAM
+FILE a1369bdee466c1364c07095750be3efc
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:14:51 2013
+LENG 85 match states, 85 columns in multiple alignment
+FILT 148 out of 1020 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9999976646897377624385100667999999854266600067874112126553015426899999279999975403688
+>Consensus
+xxxxxxxCxVCxxxxxgxxygvxsCxaCxxFFrRxvxxxxxxxCxxxxxCxixxxxrxxCxxCRxxKClxvGMxxxxvxxxrxxx
+>a1369bdee466c1364c07095750be3efc
+GSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG
+>gi|148694040|gb|EDL25987.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus musculus]gi|148694041|gb|EDL25988.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus musculus]
+------------------------------------------------TKMVSGGHGEVGKAGEKMASLPRGRcvcvlslpAFQAVQNERQPR
+>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand Binding Domain In Complex With The Specific Synthetic Agonist Lg100268gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand Binding Domain In Complex With The Specific Synthetic Agonist Lg100268gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand Binding Domain In Complex With The Specific Synthetic Agonist Lg100268gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand Binding Domain In Complex With The Specific Synthetic Agonist Lg100268
+-----------------------------MPVDRILEAELAVEQKSDQGV---------------EGPGGTGGSGSS--------
+>gi|268576120|ref|XP_002643040.1| Hypothetical protein CBG22952 [Caenorhabditis briggsae]gi|187021410|emb|CAP39479.1| hypothetical protein CBG_22952 [Caenorhabditis briggsae AF16]
+----PVVneCPVCRGqngKAVQFFYGGYACLACVSFFRRHYNVDP-KPCLTGGNCNPE---GRKCPSCRLKNIRSAGMIHT---------
+>gi|341888135|gb|EGT44070.1| hypothetical protein CAEBREN_05825 [Caenorhabditis brenneri]
+-------CIIC--LEDSN-iLTQGICSKCFMFFR-rVVNEKRMRRCVSPCEEK-RVGSPSFCRYCRLQKILDAGIIIeDHITW-----
+>gi|308496399|ref|XP_003110387.1| hypothetical protein CRE_05779 [Caenorhabditis remanei]gi|308243728|gb|EFO87680.1| hypothetical protein CRE_05779 [Caenorhabditis remanei]
+----IEKCQVCGFEGHGYHFGAFTCRACAAFFRRCHLAAttEHRKCRNKYsTCVPNRNGKWFCKKCRFDRCNKLGMSSANIQYDRD--
+>gi|309356070|emb|CAP37680.2| hypothetical protein CBG_20720 [Caenorhabditis briggsae AF16]
+-DNTVPLCTVCGDVANGKRYGTWACLGCIVFFRRTVLRKMKYKCQREERCEVTVaiQIRDVIGPRKPKSGSTVSQNRSSA-------
+>gi|341902990|gb|EGT58925.1| hypothetical protein CAEBREN_14389 [Caenorhabditis brenneri]
+--------MI-c-VDGHAFLY--------SLFIepK--raLLTKkFRK--HcqYDG--CCtdfSGEKSPPCKSCRMKKCIRMGMNSQS--------
+>gi|268560284|ref|XP_002638018.1| Hypothetical protein CBG04845 [Caenorhabditis briggsae]
+-------CVLCGNHTLLHRYGPVTCSMCNTFFRGAISGNVVlGKCLSGCFRRKVFDFKIMCRGCKLGRCLASGMDPKKI-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 587 * * * * * * * * * 1580 * * * * 1
+ 0 * * * * * * 2084 0 0
+
+S 2 * * 3598 3440 * * * * * * * 4267 4518 * 4406 659 * 4340 * * 2
+ 0 * * * * * * 4410 0 0
+
+F 3 2498 * * 4865 2999 5372 4992 3763 * 3349 5066 3201 3996 * 4997 3205 4826 5035 5086 * 3
+ 0 * * * * * * 5230 0 0
+
+T 4 3572 * 5629 3593 * 5442 5163 * * 6155 * 4900 5003 3665 5712 1992 2539 2955 * 4925 4
+ 0 * * * * * * 5689 0 0
+
+K 5 6265 6294 3275 6103 4812 4930 4423 5145 3337 3854 * 3334 3195 3240 3947 4579 5008 3840 5432 * 5
+ 16 6517 * 3070 183 * * 5971 1222 0
+
+H 6 4568 * 5949 3274 * 3692 6456 4880 2388 5545 4091 5302 3031 4295 3870 3603 4015 5330 * 6892 6
+ 87 4336 6804 2904 207 * * 6199 1312 0
+
+I 7 5437 * 5187 4558 5350 5797 5862 3063 3798 2693 4684 3637 2867 5042 5334 4511 4287 3514 * 7151 7
+ 84 4964 5333 3079 182 0 * 6361 1134 1000
+
+C 8 * 140 5700 * * * * * * 6109 * * * * 6200 * * * * 4471 8
+ 51 5700 5997 5672 29 * 0 6549 1047 1086
+
+A 9 3334 7246 6883 3418 4491 6124 7295 5444 3453 3422 5314 6976 4132 3421 3460 3487 4220 3529 6674 7405 9
+ 0 * * * * * 0 6568 0 1169
+
+I 10 * * * * * * * 1951 * 5681 6404 * * 5726 5676 * 5499 643 * 6739 10
+ 8 * 7441 1585 585 576 1603 6568 1011 1169
+
+C 11 * 133 * * 6311 5533 * * * 5465 * 5810 * * * 6237 * * * * 11
+ 32 * 5513 0 * * 0 6579 1000 1059
+
+G 12 * * 4269 3810 5981 1221 5829 * 5030 5290 6110 4422 7412 3514 3872 3963 6756 5613 * 4582 12
+ 40 6101 6254 0 * 1209 818 6532 1044 1210
+
+D 13 3699 7785 1854 4320 * 3669 6807 * 3622 6660 6678 3494 7214 4090 3173 3903 5872 4377 * 7321 13
+ 67 5680 5285 943 1059 1790 493 6548 1070 1208
+
+R 14 6095 6677 4687 3817 * 6445 4488 5349 3079 3802 6723 5337 2604 4178 3142 3465 4433 4021 * 5081 14
+ 129 3549 * 1521 618 1137 875 6553 1680 1296
+
+S 15 1677 6371 6954 4834 * 3834 7590 6242 3663 5398 5442 5392 4582 * 5402 2339 3867 4736 * 5324 15
+ 22 6076 * 514 1738 2102 383 6601 1070 1137
+
+S 16 4361 5992 4535 6091 6422 5477 3681 4196 5624 3946 4923 3107 5267 4844 4521 2395 3100 5028 6094 5601 16
+ 32 5525 * 1000 1000 0 * 6664 1101 1092
+
+G 17 3870 5483 5119 4237 * 1131 * 7037 4643 4103 6170 5520 5837 5690 4457 3451 5036 5941 * 6831 17
+ 63 4775 7367 0 * * * 6771 1234 0
+
+K 18 7714 4936 * 6159 3046 6339 4909 3496 3450 3972 5850 3698 5075 6052 4521 3974 4811 4410 7100 2310 18
+ 95 6096 4339 0 * * 0 6769 1046 1011
+
+H 19 4776 6453 6947 6370 5280 6686 1251 5315 4356 4732 * 2789 * * 3194 4520 4464 * * 5524 19
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+
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+K 38 4189 * 6256 3635 5325 3252 7536 7250 2316 3831 4880 3796 4943 4790 3873 2937 4752 5642 * 6941 38
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+D 39 6672 * 3990 3493 6113 4346 6503 6814 2147 6142 * 2361 5044 3606 4299 3958 4922 4817 7036 5922 39
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+
+T 43 5569 6408 4550 3497 7128 6043 6130 5054 2220 4998 5988 4819 4589 3958 3807 4739 3416 2722 * 6352 43
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+ 9 7394 * 698 1382 1045 957 6794 1053 1861
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+N 58 4394 5253 4162 4830 5337 6513 4569 4771 3124 3904 4828 2953 4100 4218 3608 4205 4711 5255 7303 4161 58
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+G 72 * * 7009 6980 * 121 6881 6207 * * * * * 6546 * 5933 * 5972 * * 72
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+
+M 73 5943 * * * * 5995 * 5793 * 4076 264 6330 * 5893 6097 6146 * * * * 73
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+ 79 4234 * 4003 93 1225 805 6870 1319 1101
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+A 77 1884 7210 4545 4368 5264 5088 6267 5454 3893 5575 6829 3836 5129 6081 5534 2750 4728 3895 6980 4432 77
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+V 78 5575 * * 5713 3279 * * 2785 4238 3785 * 6315 * * 5124 5263 4887 1069 * 6857 78
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+
+Q 79 6666 * 6598 3785 6316 4632 5344 6595 3318 4592 7019 5697 * 1443 2518 5346 4626 5407 * 5679 79
+ 0 * * * * * 0 6446 0 1000
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+E 80 3892 6052 4698 3891 3739 4971 5472 7025 4749 6655 4773 3053 3780 5871 3747 2898 3262 * 4657 5154 80
+ 0 * * * * 0 * 6324 0 1000
+
+E 81 6527 * 2179 2732 5439 3760 6483 6002 2797 4096 * 3185 5208 * 3430 4845 * * * 5198 81
+ 52 4829 * 1000 1000 * * 5920 1058 0
+
+R 82 4355 * 4934 5312 5990 * * 5689 2947 5016 * 6178 * 5557 771 3708 * * * * 82
+ 0 * * * * * * 5948 0 0
+
+Q 83 5618 * 2596 3535 5365 * * 3847 3852 3976 4675 3191 * 2344 4878 * 3951 4988 * 5291 83
+ 0 * * * * * * 5321 0 0
+
+R 84 * * * 4391 * 4441 4391 * 3035 3165 * * 3082 * 1370 3658 * 4609 * * 84
+ 221 2815 * 2322 322 * * 4535 1069 0
+
+G 85 * * * * * 1366 * * * * * 2268 * * 1684 * 3426 * * * 85
+ 0 * * 0 * * * 3632 0 0
+
+//
+�HHsearch 1.5
+NAME a1cf9299e65402da85fa1134c4159419
+FAM
+FILE a1cf9299e65402da85fa1134c4159419
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:17:17 2013
+LENG 209 match states, 209 columns in multiple alignment
+FILT 135 out of 1311 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEECCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
+HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHCCHHHHHHHCCCCCCC
+CCCCCCCCC
+>ss_conf PSIPRED confidence values
+9769995699814999999999849987799845122476878721878888889889987655999999999844469999999999999999999999
+9999998535587899999999999999999998546899722789998999999999999997181021107899999999984899999870355455
+125787779
+>Consensus
+xxxxLyxxxxsxxxxxvxxxlxxxgixxxxxxvxxxxxxxxxxxxxxpxxxvPxLxxxxxxlxesxxIxxyLxxxxxlxpxxxxxxxxxxxxxxxxxxlx
+xxxxxxxxxxxxxxxxxxxxxxxxxlxxlexxLxxxxxxxxxlxGxxxtxaDxxxxxxlxxxxxxxxxxxxxxpxlxxwxxxixxxpxxxxxxxxxxxxx
+xxxxxxxxx
+>a1cf9299e65402da85fa1134c4159419
+PPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLR
+CKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVADQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVN
+LPINGNGKQ
+>gi|226288896|gb|EEH44408.1| glutathione S-transferase [Paracoccidioides brasiliensis Pb18]
+--LTIHHLH-SSQSERIPWLCEELNIPYELKTYKRDPiFAPPEYKALHPSGAAPVIQDTlptndggsdaepqTLILAESCACVEYISHK-yGngrLFLps
+THKDYATFLYWFHWANGTFQPLLGrlltVETimssiggggggnsnsrsetQNQtlgSNPLIALWSGRRQRALRMLDNRF-KKrdegGEEATWLAGEEFTA
+ADIIVVFSLTTFRNW-YrYSLQEYKGILGYLQRIGGREGYR-rAMAQVDPEMTLA------
+>gi|242006743|ref|XP_002424206.1| methionine-tRNA synthetase, putative [Pediculus humanus corporis]gi|212507555|gb|EEB11468.1| methionine-tRNA synthetase, putative [Pediculus humanus corporis]
+--MKVLTNENNINSLKIVISSKITKKSIHVLTNSIEK---LNLKS---PKTIPQLVlDSGVHIFSSNASSKFLFPP------SVEHnSCVNYYLDVEATV
+IQPLIATF--SG-KVSDKNKKSFE-EILNQCNNDLI----SKKFLCGNEITVSDVSIWcalyPIFTD-TK-FNDILLNKDSLKKWFEFIFKLPEVQESLK
+LCNI-----------
+>gi|340039913|gb|EGR00886.1| glutaredoxin, GrxB family [Vibrio cholerae HCUF01]
+-------------------MAGMLNIPLDVITLDYDDDQT--TNQIIGSKQVPLLIkESGEALAESLDIIQFLLESVNSS-ETAQPAQATLDWQRSAFLP
+LQKIgYPRWsnmnlpefktasaqqaWrVKKETtelhfesllkDTSQIALQVQACIDAVKPLLK----LHSYQHV--ALIDEAIIFSILRGFFSAPE--IQ
+WDSEVRDWMVSVSQKTQVRL------------------
+>gi|255079028|ref|XP_002503094.1| predicted protein [Micromonas sp. RCC299]gi|226518360|gb|ACO64352.1| predicted protein [Micromonas sp. RCC299]
+--PVAYIAPTCPFAHKAWLALVEKEVDFEMRAVDLND-KQPDMIAaygvASPdagsVAKVPILIHDGVAMIESALCATYVAEAFkssgaDLLPATPAEQY
+KVGLWCETFA-VGPPFFRALRATSQSDVDSALDDLRSVLRKCERCLEIaqtttgrdkGQSDGPFVLGAKYSMAEVLTSTMLPRLsvalghyRGFRLhAAV
+EemGLHRLARWMDASMDRPSMRQTLGEVGR-----------
+>gi|170579264|ref|XP_001894752.1| Metaxin 2 [Brugia malayi]gi|158598526|gb|EDP36401.1| Metaxin 2, putative [Brugia malayi]
+---ALLYEY--ADCVAVQTLLKMANLPVRLEER-----PNAEF--MSPTGKVPFLKLQSFLVSEFLPVVDFLAKRNVKLSAGLTDLERGDMhaHMALFDD
+ILKNVEMYVMWMDkrnysqvtkcrygsvylfplnlilprvkwrevnnyltavdwkSKSQECVMDLADRCFKSMSSKL----DHNEYFFGDSPTELDALAF
+GHFYTILTTELPNmelkncLRRYSNLTEFCQRIDK------------------------
+>gi|151967130|gb|ABS19445.1| multivalent antigen sj97-23 [synthetic construct]
+ATLGTGMRCLKSCVFILNIICllcslvligagAYVEVKFSQYEANLhKVWQAAPIAI--------------IVVGVVILIVSF-------LGCCGAIKEN
+VCMLYMyafflivlLIAELVAAIVAVVYkdkiDDeINTLMTGALENPNEEITATMDKIqtsfhcCGVkgpddykgnvpasckEGQEVYVQGCLSVFSAFL
+KRNLIIVACVAFGVCFFQLLSIViacCLGQRIHDYQNV--------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+P 1 2615 * * * * * * * 4246 * 4276 * 751 * * 2852 * * * * 1
+ 0 * * * * * * 6861 0 0
+
+P 2 3520 * 3739 3009 * * 5442 5369 2607 4573 4885 5539 3851 3423 * 3114 3307 5265 * * 2
+ 29 5639 * 2000 415 * * 8750 1137 0
+
+Y 3 5356 * * * 4353 6401 * 2298 * 2212 3124 5077 3309 * 6210 6290 5392 4569 * 2660 3
+ 19 6290 * 0 * * * 9795 1005 0
+
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+ 0 * * * * * * 9906 0 0
+
+V 5 * * * 6337 3685 * * 3569 * 535 5486 * * * * * 5025 3798 * 6543 5
+ 0 * * * * * * 9947 0 0
+
+V 6 * * * * 3082 4619 3266 3907 5376 4025 * * * * 5670 6690 5325 3636 5789 1210 6
+ 0 * * * * * * 9974 0 0
+
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+
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+
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+
+V 10 3266 6642 3655 * 3135 4488 4198 3161 * 3896 5649 5721 3718 4862 4082 4607 4496 4216 4524 5395 10
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+
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+
+G 12 3515 * 6554 5906 5763 2278 6035 4957 6943 4523 * 4907 1348 5782 * 4093 5307 4907 * * 12
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+
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+
+C 14 2537 2408 * * * 2903 6758 * 6632 * * 6592 6106 * * 1952 3643 3025 * * 14
+ 57 4681 * 0 * * * 10217 1510 0
+
+A 15 3341 6118 6684 3016 4734 6654 3696 4738 5702 3450 4112 6558 6541 3125 2717 5342 5810 5059 4521 5732 15
+ 56 4705 * 1654 551 * * 10217 1651 0
+
+A 16 2970 6016 * * 5292 5480 6657 4123 2286 4120 5282 * 5798 6695 1902 3798 5042 4156 * * 16
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+
+L 17 2887 4191 * * 7033 * * 2289 * 2922 6726 * 4565 * * 4239 4513 1655 * * 17
+ 0 * * * * * * 10248 0 0
+
+R 18 4433 6363 * 4685 5258 6731 4292 4158 4286 2901 5275 5458 6559 4396 1468 6752 5494 5975 5248 4915 18
+ 15 6566 * 0 * * * 10260 1042 0
+
+M 19 3133 5900 * * 4428 6632 * 2604 * 2025 2960 * * * 6561 5583 3984 3789 3873 4696 19
+ 0 * * * * * * 10244 0 0
+
+L 20 1770 4717 * * 3736 7092 * 4636 * 2260 3647 * * 6375 6582 6865 4606 2943 6167 4596 20
+ 15 6572 * 1585 585 * * 10267 1059 0
+
+L 21 2875 4323 * * 3907 6585 * 3727 * 780 4557 * * * * * * 4779 * * 21
+ 33 6167 6795 3459 138 * * 10291 1149 0
+
+A 22 2624 6817 4453 2403 5035 4469 4243 5270 2900 4358 * 4142 * 4635 4152 5527 5268 6991 4960 5945 22
+ 0 * * * * * 0 10284 0 1002
+
+D 23 2958 5910 4890 2041 4700 6712 4438 5080 * 2451 3828 6538 * 6797 5402 * 6887 5098 4569 3685 23
+ 12 6887 * 3585 126 * 0 10284 1000 1002
+
+Q 24 2489 4981 * * 5212 5317 5351 5883 2177 2428 5388 5808 6541 5370 5264 3796 4737 4739 6799 5007 24
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+
+G 25 5408 6795 3631 3709 * 1073 * * 4625 * * 2600 * 4362 4263 5126 * * * * 25
+ 24 7199 6662 1585 585 * * 10291 1269 0
+
+Q 26 4216 * 5816 * 5474 * * 2004 6742 1823 6834 * 5667 4639 6086 6106 5637 2018 * * 26
+ 43 5074 * 712 1360 * 0 10266 1705 1062
+
+S 27 4104 * 2960 3090 * 5188 6008 6980 4104 * 6353 4299 1547 5823 4139 4282 4921 6074 * 6985 27
+ 11 7037 * 1000 1000 * 0 10243 1000 1492
+
+W 28 6989 6039 5952 6575 2030 * 3940 4765 6628 3768 6823 * * * * 6549 5599 3225 4323 1631 28
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+
+K 29 6361 7010 2797 1842 * 5850 5846 6655 3154 * * 4377 * 4506 3126 4427 3229 4963 * 6881 29
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+
+E 30 4801 * 2945 3417 3788 6652 5328 2816 6953 2688 * 5810 * 5424 5958 5117 3485 3121 6069 5439 30
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+
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+
+V 32 4602 5957 5055 3196 3885 6794 5512 4337 5043 3456 5358 4572 3202 5364 3125 4609 3594 4225 7042 4833 32
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+
+V 33 3784 4725 * 5427 3596 6200 5789 2590 * 2948 4990 6900 * 6955 4938 6830 5015 1753 * 4665 33
+ 202 4895 3361 2730 236 * 0 10266 1676 1062
+
+T 34 4020 5782 1917 3859 5631 4290 4690 6900 4635 5682 * 3322 4129 5689 4072 4023 3425 5817 * * 34
+ 280 6740 2583 0 * 2935 202 10133 1076 2814
+
+V 35 5494 6178 5483 5281 2890 4454 * 3570 5600 2322 3664 6363 3125 5580 3496 5526 6430 5506 6885 4274 35
+ 352 2464 4816 1452 656 3206 166 9923 3432 4873
+
+E 36 3475 6387 2938 3556 5609 2990 5255 4843 3422 6778 * 3852 3406 6664 4534 4463 3947 4444 * * 36
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+//
+�HHsearch 1.5
+NAME a251ab96460cc372677a195a346bdc79
+FAM
+FILE a251ab96460cc372677a195a346bdc79
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:15:00 2013
+LENG 96 match states, 96 columns in multiple alignment
+FILT 101 out of 175 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHHCCCEEEEEEEECHHHCCCCCCEEEECCEEEEEECCCCCCCCCEEEECCEEEEEEEEEEEEEECCCCEEEEEEEEECCEEEEEECC
+>ss_conf PSIPRED confidence values
+941469963514874656999841217998763998884999853276699987996416799999999997258988999999773356517688
+>Consensus
+xxxxxxxvxxxaxCxPrxxxVxixxexpxxxxxxyxPxCvxvxRCxGCCxxexlxCxPtxtxxvxxxvxxxxxxxxxxxxxvxxxxHxxCxCxxkx
+>a251ab96460cc372677a195a346bdc79
+MVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRAGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKAECRPKK
+>gi|41057195|ref|NP_957909.1| ORF132 vascular endothelial growth factor-like protein [Orf virus]gi|41018752|gb|AAR98357.1| ORF132 vascular endothelial growth factor-like protein [Orf virus]
+-TNDWVRTLDKSGCRPRDTVVYLGDEYPENTNLQYNPRCVTVKRCSGCCNGEGQICTAVETRNTTVVVSVTSVSSSSgansgvsnNLQRISLTEHTKCDC
+IGRT
+>gi|62421239|gb|AAX82359.1| vascular endothelial growth factor-like protein [Orange-spotted grouper iridovirus]
+------ESILESSCQPRPTKVQLSG------YDMYIPACAYVPRCGGCCSgDEATTCRPTATSTVNVTAYKLVFHETH-QVVVSVVTHTACACKFK-
+>gi|340710875|ref|XP_003394009.1| PREDICTED: hypothetical protein LOC100647889 [Bombus terrestris]
+---------KQANCEPSPTVVPTYQR--NDPSIIYFPRCTRVKRCTGCCGSELLSCQPKEIETRNFEIMLAKLTAQGrfeyqGKQIVPIDEHIRCGCD--
+-
+>gi|340719499|ref|XP_003398190.1| PREDICTED: vascular endothelial growth factor A-A-like [Bombus terrestris]
+--------FRCSMPQPRAIPVAELLTVGPSPDEVFYPASTVLTRCKgaGCCPDPKQICAPIETRNVSLVFMVkhtIDRQRDRHHEVIHALEHTKCGCVHK
+-
+>gi|47218000|emb|CAG11405.1| unnamed protein product [Tetraodon nigroviridis]
+------EEAVPALCKTRTVIYEIPrsQVDPTSANFLIWPPCVEVKRCTGCCNTSNMRCHPSRKHYRTVKVAKVEYVkRKPKlkEVFVRLEDHLECMCTS-
+-
+>gi|221110330|ref|XP_002160342.1| PREDICTED: similar to vascular endothelial growth factor [Hydra magnipapillata]
+---------DSPSCQLMQKFEQIPKSKT--DSFIFFPSCIKVNRCSGCCNTDVMECVALTNSSHFIDVYKVPTNGRPYLYRVSYFNDESCGCQ---
+>gi|198416765|ref|XP_002128012.1| PREDICTED: hypothetical protein [Ciona intestinalis]
+--------LRSTKCAVREEIVDIRDIHPHLPpDVLLLPSCILIRKCSGCCQNSRHVCKPTAIYVTRVEVSQQHVvRRRLDYITLNFTHHDECECMS--
+>gi|91081701|ref|XP_970909.1| PREDICTED: similar to Pvf3 CG34378-PD [Tribolium castaneum]gi|270006461|gb|EFA02909.1| PDGF- and VEGF-related factor 3 [Tribolium castaneum]
+-----AKVRQEGQCRkPLPKVISVQSEHPDPS-KTYTPHCTILHRCAddtGCCANHTTRCGPKTQVLVHLYFYAKTLGvPGTKVEKLTFYNHTECACIEK
+-
+>gi|335293493|ref|XP_003129048.2| PREDICTED: platelet-derived growth factor C-like [Sus scrofa]
+------EEVRLYSCTPRNFSVSIREELK-RTDTIFWPGCLLVKRCGGncaCCMHTCneCQCVPSKVTKKYHEVLQLRPKTGVrglhkSLTDVALEHHEEC
+DCV---
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+ 284 2552 6956 238 2717 305 2390 5702 1862 1441
+
+Q 75 4184 * 4462 5165 * 2877 5167 6681 3445 6245 5919 3901 5365 2690 2976 3100 4567 4494 * * 75
+ 137 3469 * 845 1173 340 2250 5809 1476 1127
+
+G 76 * * 4919 4526 * 1858 5824 5880 2890 * * 4813 4974 4746 3102 2483 4415 5514 * 6731 76
+ 158 3798 4971 687 1401 * 0 5804 1345 1000
+
+Q 77 4933 * 4876 6495 * 2916 5407 * 4250 5789 6760 4496 2406 2835 3758 2737 4315 4682 * * 77
+ 729 1470 4809 2714 239 504 1763 5759 2928 1146
+
+H 78 6084 * 5224 3326 * 3125 3027 5273 2625 * 5984 3287 4970 * 4363 3397 3934 4211 * 5614 78
+ 157 3275 * 1338 727 0 * 5762 1589 1276
+
+I 79 * 6400 6099 5658 4540 * 4606 2895 3535 2322 4790 6559 4375 4702 3863 5635 5904 3010 * 3542 79
+ 56 4709 * 2071 392 * * 5798 1179 0
+
+G 80 3838 5398 5476 2521 7134 4247 5870 3176 3440 6604 * 5885 6012 3980 4794 7189 3538 2515 * 5646 80
+ 93 4417 6012 1776 498 * * 5798 1223 0
+
+E 81 * * 4105 2443 5292 * 5296 3112 3227 4211 * 5859 6219 4366 4058 4958 2669 3294 * * 81
+ 0 * * * * * 0 5774 0 1044
+
+M 82 4342 * * * 4806 * * 2420 6471 2092 2966 * * * 5933 * * 1565 * * 82
+ 15 6549 * 0 * * 0 5774 1000 1044
+
+S 83 4367 * 6854 5677 * * 5285 6933 5579 4120 * 5256 2993 4542 4115 1764 2458 4356 * 4909 83
+ 38 5250 * 1364 710 0 * 5774 1074 1044
+
+F 84 5310 * * * 1304 * * 3471 * 2124 5663 * * 5398 * * * 2420 * 5646 84
+ 0 * * * * * * 5798 0 0
+
+L 85 5043 * 4884 1578 5646 * * 5065 * 3609 * * * 4593 6434 4806 2566 2476 * 4976 85
+ 0 * * * * * * 5798 0 0
+
+Q 86 * * 3779 1532 * * 3680 * 4466 * * 1950 * 2709 5024 * 5999 * * * 86
+ 0 * * * * * * 5798 0 0
+
+H 87 * * 4293 6184 * * 134 * * 5398 * * * * * * * * * * 87
+ 0 * * * * * * 5798 0 0
+
+N 88 * * 4660 3442 * * * 5071 3524 3089 * 3811 * 5854 5960 4124 1413 3369 * * 88
+ 0 * * * * * * 5798 0 0
+
+K 89 3150 * * 1815 * 4768 5082 * 2459 5980 * 7131 * 3722 2921 3532 5144 6718 * * 89
+ 17 6430 * 1000 1000 * * 5803 1007 0
+
+A 90 5808 61 * * * * * * * * * * * * 5395 * * * * * 90
+ 0 * * * * * * 5803 0 0
+
+E 91 3345 * 3807 1550 * 3842 3968 6819 2549 * 6541 * * 4542 4544 5057 4990 5858 * * 91
+ 0 * * * * * * 5803 0 0
+
+C 92 * 0 * * * * * * * * * * * * * * * * * * 92
+ 29 5632 * 1585 585 * * 5803 1064 0
+
+R 93 6457 * 3949 4082 6579 5524 * 4704 4552 5982 4488 * * 2530 1638 5265 6276 2663 * * 93
+ 0 * * 0 * 0 * 5725 1064 1064
+
+P 94 5754 3162 5582 3285 4304 4947 4744 5550 4855 4794 6220 5628 1580 6223 * 2824 * * 6467 * 94
+ 0 * * * * * * 5198 0 0
+
+K 95 * * * * * * * 4621 648 5818 * * * 5719 1814 * * * * * 95
+ 0 * * * * * * 4804 0 0
+
+K 96 * * 3185 * 4111 * * * 1413 4715 * 4281 2992 * 3574 4685 4389 * * 3817 96
+ 0 * * 0 * * * 3576 0 0
+
+//
+�HHsearch 1.5
+NAME a44d747376cfd87bd0f30749697bc63b
+FAM
+FILE a44d747376cfd87bd0f30749697bc63b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:20:24 2013
+LENG 202 match states, 202 columns in multiple alignment
+FILT 138 out of 1781 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEECCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCCCHHHCCCEEEEECCCCCCCC
+CCCEEEECCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCC
+CC
+>ss_conf PSIPRED confidence values
+9089479718997999799999974789946999992799984499995254345677882799984489747888756887567659999806887530
+0010000122454200000145315544207899972669886799978985302443066550367679967973489849999995998715778788
+89
+>Consensus
+xxvxqxpxxxxxxxGxxvxLxCxxsxxxxxxixWxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxLxIxxxxxxDxgxYxCxvxxxxxxxx
+xxxxxxlxvxxxxxxxxpxvxxxxxxxxxxxlxCxxxxxxPxxxvxWxxxxxxxxxxxxxxxxxxxxxlxlxxxxxxxxxxytCxvxhxxxxxxxxxxxx
+xx
+>a44d747376cfd87bd0f30749697bc63b
+QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALT
+FGSGTKVIVLPYIQNPEPAVYALKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDATVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDV
+PC
+>gi|54779581|gb|AAV39959.1| immunoglobulin mu heavy chain [Homo sapiens]
+------SDPGLVKPSETLSLTCTVSGGSIssYYWSWIRQPPGKvtGVDWVYLLQWE-hQlqPLPQ-ESSHHISRHVQEPVlpEAELCDRCGHGRVLLC--
+eRcrlDivvvvAAGfDWFdPWGQGTLVTVSS---------------------------------------------------------------------
+----------------------
+>gi|293353800|ref|XP_002728296.1| PREDICTED: rCG64189-like [Rattus norvegicus]
+-FLDDTKDGLFSRIRGFntsptRKPQCKSQTRPCTTVLWVTQWQ-----------------KP-QGELSTNREATGGLAAEKLPLRSSD---FTTAF---
+----------------------------------------------------------------------------------------------------
+-------
+>gi|115497936|ref|NP_001068678.1| poliovirus receptor-related 2 [Bos taurus]gi|109658349|gb|AAI18435.1| Poliovirus receptor-related 2 (herpesvirus entry mediator B) [Bos taurus]gi|296477435|gb|DAA19550.1| poliovirus receptor-related 2 [Bos taurus]
+DVRVQVAAEVRGNLGDTVELPCHLlpSAPEirVSQVTWLRLDAPEGKQNVAIFHPQYGrsfpSPKpgK-ERLSFVN-TapssgagqgselEVRDATLSLR
+GLTVEDEGNYTCE------FATFPKGtsrgvTWLRVIAQPQNHAEKQEVTFNLDPVPVARCVSAGGRPPARVSWlspLDGEAKETQGSGPLPGTVTVTsr
+YTVTPLSEADGVKVICKVEHESFqePKLLP------
+>gi|53987930|gb|AAV28078.1| immunoglobulin delta heavy chain [Salmo trutta]
+-KIVR-PSDSDLWGSNNATLLCLVSGFFPSDVIVNWEKAGSRLPFSRYSSIPSVlYAGS-STYSMN-------SRLIVPRSEWDQNSNYSCAVRHESSER
+PI-THTIENVFGSVTPSASTATLL---QGPSELVCLVLGFSPsDINITWlLDNVTELWNNNTSTTYRAPGGKfgirshlSLAHQDWTPGAVYTCRVTHTT
+Q-----------
+>gi|30268720|gb|AAP29471.1|AF387763_1 costimulatory molecule B7.1 [Meriones unguiculatus]gi|37903876|gb|AAO38852.1| costimulatory molecule B7.1 [Meriones unguiculatus]
+--------QVFKSVNEKVSLSCGYNFSFdeLAIHRIYWQKDDRKMVLSISSGDKKVwPEYQ-NRTLCDISNN---FSLMILGLLPSDRGTYECVVqkkER
+GVYLLRHLNSVELSIRAD--FPVPNITQFGNQSADmKTIICETSGGFPEPRSLWLESGRELRGINTTVSQDPESELYavSSKLDFNatYNRSIVCSVAYG
+K------------
+>gi|341890725|gb|EGT46660.1| CBN-ZIG-2 protein [Caenorhabditis brenneri]
+-RIAQGLEDMKAAPGEHITLHCMVLSTPSSVFHW--EHNGIRVQEDSNVNIHERMMNI-GKEVVG--DGTISSFYTIPCVNANSTGIYKCIAF--NGHGT
+VESSAKVTVegkptecVSN-DKTAPKIITITGIRlqengRVATLNCRAD---KPAKFEWTFKGKPIDMNDGRFSVLSYGDLVISNISWSDMGDFTCYARN
+K-------------
+>gi|301791774|ref|XP_002930855.1| PREDICTED: signal-regulatory protein beta-1 isoform 3-like [Ailuropoda melanoleuca]
+-----SGPAARASPEQTVSFTCESHGFSprNITLRWFK----NGNELAASQTTVDAEGHG-TSYNIS---SMTRLVLAPGDVRSQV--------------
+PLHPqpnprSGPQLLLCAVSVPPTLEVSQQPVAGDQVNVTCQVTKFYPrHLQLTWLENGNVSRTEmasMASNLIENKDGTFnwtswllVKSSTHREDVVL
+TCQVQHDRQ-----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+Q 1 * * 3282 3467 * * * 3550 * * * * 3462 858 * * * 3663 * * 1
+ 0 * * * * * * 4956 0 0
+
+S 2 4471 * * 3356 5622 * 4098 5537 3812 5470 * * * 2764 3759 3850 2665 2470 * 4850 2
+ 0 * * * * * * 8957 0 0
+
+V 3 * * * * 3458 * * 2317 * 2166 3716 * 5964 * 5843 * 5930 1476 * * 3
+ 0 * * 2585 263 * * 9375 1036 0
+
+T 4 6040 * 3832 5320 * 5981 6101 3953 4558 * 4726 6216 5908 3278 5397 3933 1634 2699 * 6004 4
+ 29 6538 6803 0 * * * 9482 1000 0
+
+Q 5 4960 * 4928 3977 6114 6181 5190 5413 4691 4560 * * 4180 1190 4338 4436 6090 3394 * 6317 5
+ 226 * 2784 * * * 0 9702 0 1000
+
+P 6 3996 * * 5148 5208 4578 4451 5063 5033 4082 * 4843 2057 4073 5159 3289 2701 4149 * * 6
+ 34 * 5407 * * 129 3543 9692 0 2499
+
+D 7 4083 * 5363 4404 * 4501 5628 * 4733 4769 * 6342 900 3791 6369 4091 5409 5969 * * 7
+ 37 * 5305 0 * 604 1549 10032 1015 1280
+
+A 8 3279 * 4278 3785 * 4028 5498 * 3910 3574 * 5334 3165 4258 4099 2465 3720 4837 * * 8
+ 44 * 5042 * * 611 1535 10091 0 1276
+
+R 9 5371 6989 3024 3606 5351 5020 4763 5799 5578 5531 6823 4285 3723 4201 4630 2475 3200 4238 * 4722 9
+ 27 * 5775 * * 509 1750 10153 0 1345
+
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+ 0 * * * * 1926 440 10372 0 1312
+
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+ 21 6117 * 2431 296 0 * 10312 1479 1188
+
+V 12 2218 5647 * * 6849 4569 * 3999 3771 4921 4983 6810 6705 * 6661 4500 3387 1677 * 4918 12
+ 9 7395 * 0 * * * 10371 1000 0
+
+S 13 4301 * 5807 3367 4709 * * 4926 3395 4598 4705 4819 4009 3532 3399 2754 4167 3787 6355 5555 13
+ 20 6870 7581 4644 59 * * 10382 1000 0
+
+E 14 4789 * 4824 2237 * 5544 * 4169 4338 2682 7202 6743 3045 5110 4774 3822 4838 2992 * * 14
+ 0 * * 0 * * 0 10407 1000 1000
+
+G 15 * * 4497 6860 * 464 6642 * 5718 6552 * 4267 * 4916 4720 5164 5653 6399 * * 15
+ 13 * 6850 * * * 0 10528 0 1000
+
+A 16 4734 * 2968 2241 * 3060 7085 6822 3702 5325 6438 4559 6355 3264 5902 2747 4343 * * * 16
+ 0 * * * * 919 1086 10550 0 1159
+
+S 17 6788 5889 3265 5327 6875 5143 5583 * 4241 6880 * 3197 3178 4802 4633 2001 2819 4687 * * 17
+ 46 5639 6444 2322 322 * 0 10525 1225 1000
+
+L 18 1702 * * 5932 6214 5051 7087 3741 * 4352 6865 * * 7339 6893 5261 4251 1365 * 6425 18
+ 13 * 6853 * * 879 1133 10537 0 1170
+
+Q 19 5308 * 5824 4166 6138 * 5675 3734 4127 5001 6032 3822 6133 4453 4305 2868 1743 3965 * 7008 19
+ 0 * * * * 846 1172 10509 0 1179
+
+L 20 6345 * * * 3083 * * 2448 * 908 4606 * 6003 * * 6139 * 3597 * * 20
+ 0 * * * * * 0 10553 0 1000
+
+R 21 4972 7037 5929 5107 5532 4496 4893 5738 5335 4112 6938 3127 2701 5404 3621 2891 2851 4512 * 6008 21
+ 0 * * 2807 222 0 * 10553 1000 1000
+
+C 22 5648 151 * * 5450 * * * * * * * 6816 * 6442 5956 7037 6352 * * 22
+ 30 6857 6366 0 * * * 10554 1003 0
+
+K 23 6287 * 3876 3579 6979 4144 4003 4943 3814 4568 6012 3937 7065 4141 3157 3155 3191 4033 7041 6033 23
+ 39 5669 7141 1029 972 0 * 10577 1477 1152
+
+Y 24 2985 5432 * 6419 3172 4871 6857 3242 6850 2998 * 6859 * 6644 * 3957 4181 2181 * 3525 24
+ 48 7027 5307 1000 1000 0 * 10592 1040 1000
+
+S 25 5091 * 5134 3266 5327 5853 5140 5801 4013 4774 7006 4698 4129 5391 4267 1661 2786 * * 6548 25
+ 56 4726 * 1523 617 0 * 10519 1686 1314
+
+Y 26 5460 7145 3126 4032 6032 2258 5092 5379 5323 5328 5255 3644 3637 4241 5323 3544 4366 5243 * 4579 26
+ 37 6321 6292 1000 1000 * * 10554 1039 0
+
+S 27 4338 5843 4480 4346 3864 4136 5029 3937 3872 4167 6724 4897 3404 5929 4476 3022 4357 3543 * 4751 27
+ 49 6928 5302 1797 489 1086 919 10578 1127 1159
+
+A 28 4947 6859 4811 4897 5267 3410 4957 6766 4478 4210 * 3836 2387 3654 5831 3450 3733 3838 6351 5480 28
+ 1083 1052 4448 1484 638 451 1898 10538 6895 1466
+
+T 29 4001 4840 3621 3463 4672 3294 6537 6012 5169 3594 7035 3785 4421 4762 4562 3129 4288 3794 * 6801 29
+ 126 3894 5907 1337 727 585 1585 10448 1868 2091
+
+P 30 4091 * 4207 5326 4881 4444 4175 3530 5030 3728 6520 4010 2823 4646 4848 3793 4058 4441 6939 4080 30
+ 73 4584 7064 775 1267 588 1579 10464 1489 1803
+
+Y 31 4586 * 4318 4325 5321 5551 4706 4056 7035 3914 6699 3443 5930 4199 4512 3403 2794 4196 5935 3136 31
+ 18 6362 * 749 1305 610 1537 10551 1314 1329
+
+L 32 5940 6365 * * 3751 4997 7001 1848 5990 2602 4292 * * 6843 6333 * 6327 1810 5936 6179 32
+ 34 5424 * 735 1324 * 0 10525 1307 1007
+
+F 33 4229 6327 6746 4397 3355 5983 3799 4832 5088 3700 * 4842 * 4287 3045 3193 3130 4990 * 3500 33
+ 17 * 6448 * * 0 * 10525 0 1007
+
+W 34 * * * * 5244 * * 5443 * 4520 * * * * * 6077 * 4632 260 5892 34
+ 86 4557 6045 748 1305 * 0 10492 1526 1008
+
+Y 35 * 5962 * 5094 2232 * 5279 4001 3785 3429 * 6552 * 5168 4531 4806 4611 3974 5829 2008 35
+ 74 5973 4887 2169 363 * 0 10470 1153 1322
+
+V 36 5964 * 5808 * 4504 * 4201 5859 2484 4688 5598 6173 6068 2891 1693 5385 5937 5448 4033 6054 36
+ 168 5842 3438 1155 860 1857 466 10401 1129 2014
+
+Q 37 4174 6112 3492 3800 5840 4856 6007 * 3345 5330 * 5034 4846 1532 5072 4328 4711 4645 * 6643 37
+ 163 * 3229 1000 1000 1900 450 10383 1000 3310
+
+Y 38 4860 * 3604 5084 5625 3664 4603 5124 2532 4387 6580 4017 5303 4354 3608 3339 3543 5734 6687 5470 38
+ 92 6718 4265 0 * 3553 128 10234 1000 4241
+
+P 39 4526 6711 3427 3486 4587 3580 6676 6354 4931 4231 * 3669 2087 4315 6694 3842 4068 5713 * 6756 39
+ 79 * 4225 * * 1259 780 10236 0 4671
+
+R 40 5533 * 3566 3734 6400 1563 5409 * 3852 6609 * 3475 5267 6713 3866 3713 4722 5075 5772 6749 40
+ 0 * * 1585 585 1990 418 10319 1000 3992
+
+Q 41 5234 * 4271 3343 6864 3940 6653 6089 3142 6093 * 4242 3853 2682 4352 2601 3863 4778 * * 41
+ 42 7182 5497 1585 585 3244 161 10356 1000 3305
+
+G 42 3424 * 7100 3618 * 2578 5589 4930 3790 4133 6520 3578 3493 5886 5008 3019 3554 5166 * * 42
+ 132 4888 4216 1092 913 4083 88 10378 1338 3408
+
+L 43 5438 5771 6693 6314 4551 6800 * 3445 5271 2983 5745 4414 1738 4333 5415 5166 4428 2966 * * 43
+ 71 6813 4677 1585 585 2976 196 10266 1000 3920
+
+Q 44 5035 * 4197 3010 * 4042 6773 3696 3183 * * 5898 6401 2771 4369 3301 3467 3592 6078 5607 44
+ 22 * 6069 1312 744 1316 741 10205 1152 4124
+
+L 45 4808 6722 5809 4383 2877 5315 7261 4085 5234 2344 6570 5904 5400 5454 3524 4406 4611 3470 4805 3961 45
+ 42 * 5138 * * 2487 283 10301 0 3199
+
+L 46 5800 5637 7175 4686 5426 6762 6581 2742 * 1653 4467 4713 5289 5115 6936 4476 5287 2917 5522 4830 46
+ 42 * 5117 * * 2455 290 10358 0 3186
+
+L 47 3090 5834 4326 4199 4979 5188 * 2218 5085 2696 * 6355 * 5717 5755 3927 4853 3559 * 3879 47
+ 51 6150 5610 0 * * 0 10302 1014 3215
+
+K 48 4423 6835 4497 6656 3342 5281 4531 3632 4351 4770 7039 5854 5492 5401 3928 3613 3046 5015 5804 2570 48
+ 38 6883 5812 1000 1000 4342 73 10330 1001 3589
+
+Y 49 5119 5420 5574 4574 3475 3433 4405 3765 4388 3631 5834 4848 4168 6724 4255 3525 3216 4354 * 4641 49
+ 35 6946 5971 0 * 3242 161 10336 1000 3677
+
+Y 50 4165 * 3325 5313 3792 3677 3610 5046 4210 4132 6375 3153 * 5274 * 3209 3374 5217 * 3967 50
+ 44 * 5071 * * 3587 125 10350 0 3699
+
+S 51 4301 * 3378 4426 4999 3270 4327 6396 3625 4677 7025 3150 4928 6629 4568 2941 3634 5225 4811 6478 51
+ 85 5713 4709 615 1527 2819 220 10332 1131 3964
+
+G 52 3239 6315 4198 3731 6332 3706 5273 5818 3505 4511 * 3228 4745 4373 4492 3159 4265 3722 * 6544 52
+ 64 * 4529 0 * 3550 129 10383 1000 4026
+
+D 53 4077 * 3913 5485 5435 3174 4669 5723 3656 4645 7232 3815 4121 3754 4096 3076 3510 5230 * 4649 53
+ 119 7294 3781 521 1722 3248 160 10253 1125 4265
+
+P 54 4632 * 4486 2498 * 3127 * 4008 3216 4353 * 4152 4773 4681 4083 4695 3071 4518 * 6285 54
+ 1158 915 5530 1672 543 2258 338 10081 6632 4738
+
+V 55 4424 6816 3208 3117 4455 3193 6664 5066 5018 4698 6667 4707 3182 3572 4973 5166 4057 4210 * 4613 55
+ 37 5287 * 0 * 2814 221 10269 1245 4277
+
+V 56 3670 * 4156 3097 4893 4417 5641 4806 3750 3504 5549 5868 4856 3993 5249 3752 4775 2805 * 4886 56
+ 106 4258 5762 2649 251 2584 263 10270 1868 3870
+
+Q 57 4876 * 3752 3751 4539 3477 5680 * 3554 4822 * 4146 3168 4652 5159 3185 4223 4405 * 3344 57
+ 311 4776 2668 415 2000 * 0 10314 1442 3665
+
+G 58 4011 6427 3488 4130 6436 2932 4570 * 2945 6367 4878 2999 5534 3833 4129 3256 5213 * * 6180 58
+ 2395 6021 332 0 * * 0 10101 1018 5422
+
+V 59 * * * * 2495 3804 * 4060 * 2788 * * * * 4010 * 4046 2515 * 2008 59
+ 2105 382 * 219 2826 63 4543 6298 2719 9223
+
+N 60 3057 * 2903 3324 6780 2215 4919 * 4217 6697 * 3818 4335 5136 5532 3119 5008 6864 * * 60
+ 57 5353 6102 1976 423 2407 301 10490 1380 1573
+
+G 61 6073 5566 4938 5707 * 4408 6751 5832 3103 6827 6539 4980 5720 3802 1189 4340 4361 5791 * 5308 61
+ 33 6079 7041 459 1877 * 0 10437 1156 1657
+
+F 62 4755 * 7000 6812 1557 5072 6612 3735 * 3392 5759 * 6625 5827 7333 5328 4067 3592 * 2504 62
+ 0 * * 0 * 1345 722 10440 1000 1810
+
+E 63 4418 * 6107 4480 4584 * 5448 5700 3675 4073 6145 6060 5350 3349 3974 1893 3022 4485 6745 6558 63
+ 45 5840 6253 1297 754 * 0 10493 1125 1437
+
+A 64 3463 5212 5856 6332 4371 3542 5417 2922 6909 2554 4161 5420 5445 5508 5693 4345 4580 2808 * 7117 64
+ 41 6976 5626 1585 585 2783 227 10529 1027 1762
+
+E 65 5370 5817 3389 4152 4339 4901 5897 4815 4854 3654 4820 4065 * 3993 4315 2834 3022 3689 6942 * 65
+ 536 5984 1765 1468 647 1807 485 10524 1111 1992
+
+F 66 4592 * 3894 3916 4140 2822 4850 4499 3944 3590 6415 5431 5529 4700 2997 4443 4235 4050 5627 * 66
+ 148 * 3355 * * 4869 50 10001 0 5842
+
+S 67 * * 2117 4602 6791 5544 4637 5760 3984 3924 * 2945 4550 4485 3707 3551 3825 4687 * 5526 67
+ 294 4509 2832 0 * 630 1499 9868 1287 6327
+
+K 68 4362 * 4147 4040 5695 3510 4833 5124 3253 3429 * 3548 3231 5854 4119 3461 3878 4644 * * 68
+ 117 3858 6803 1559 598 1291 758 10196 1949 4414
+
+S 69 3783 * 3085 4183 5365 3776 5489 * 3693 3775 * 3585 6621 4350 4666 2379 3916 4880 * 6628 69
+ 138 5314 3913 611 1534 3010 191 10250 1449 3265
+
+N 70 4248 * 5484 3473 * 2583 5560 6425 3585 4582 5866 3325 4760 3435 3891 3545 3571 5817 6796 * 70
+ 243 6545 2795 1000 1000 3745 112 10208 1005 3936
+
+S 71 5612 5811 3773 6515 * 2462 4731 6322 3804 6426 4882 3150 6562 4056 3229 3679 3433 4047 * 7012 71
+ 60 4624 * 822 1203 3704 115 10189 1453 5479
+
+S 72 4541 * 3497 4386 4526 4535 * 4372 4362 3958 * 3324 6642 4265 3947 2431 3481 4065 * 6440 72
+ 90 5053 5056 1019 981 646 1471 10250 1447 5215
+
+F 73 2836 4175 * 6612 2934 4375 5619 5570 5135 3974 6021 5578 6838 7109 5067 2748 6919 3534 5114 2972 73
+ 42 5598 6904 0 * 229 2771 10677 1307 3080
+
+H 74 4129 * 5968 4754 5711 6722 4510 3994 5100 7776 5319 3955 5786 4383 4368 2024 2423 4113 * 5230 74
+ 51 5681 6037 1281 765 523 1717 10645 1149 1354
+
+L 75 4854 6562 * * 5014 * * 4034 * 422 5117 * 7151 6609 6741 * * 4242 * 6916 75
+ 11 7004 * 0 * 504 1762 10713 1159 1370
+
+R 76 5037 * 6132 3289 7486 5420 4271 4307 3616 4393 5511 5133 6350 3798 3147 3563 2432 4665 5685 5935 76
+ 21 * 6103 * * 0 * 10661 0 1000
+
+K 77 * * 7217 * 6284 6986 * 912 5045 2252 5148 6346 6950 * * * * 2974 6017 6689 77
+ 0 * * * * 892 1117 10791 0 1166
+
+A 78 4684 4875 5829 5422 6718 5844 4382 5973 3125 3795 7224 4015 3240 3305 3947 2587 3509 6162 * * 78
+ 0 * * * * * 0 10778 0 1000
+
+S 79 2974 6716 3066 4470 * 3164 6494 * 3571 5244 7070 2445 4949 4258 4089 3204 6205 * * 6821 79
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+//
+�HHsearch 1.5
+NAME a4ffb81039c95ec205e15ab0095774e5
+FAM
+FILE a4ffb81039c95ec205e15ab0095774e5
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:42:11 2013
+LENG 103 match states, 103 columns in multiple alignment
+FILT 4 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCEEEEE
+ECC
+>ss_conf PSIPRED confidence values
+9844889998751433254557898888863676069999942896799966872002433507999888899999842434241353489976121555
+059
+>Consensus
+xpqnitxlcxeyxntqiyxlnxxixsyteslagkremviisfxngatfqvevpgsqhxxsqkxxxermkdtlrxayxtxxkixklcvwnnktpnsiaaix
+xxn
+>a4ffb81039c95ec205e15ab0095774e5
+TPQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAIS
+MAN
+>gi|23263340|dbj|BAC16524.1| ECXB [Escherichia coli]
+TPQNITDLCNEYQNTMIYSLNKEIATYTESLAGKREMVIISFSNGATFQVEVPGSQHLESQKRPLERMKDTLRAAYFTGIKISKLCAWTNKSPNSIAAIE
+LSN
+>gi|23263337|dbj|BAC16522.1| CFXB [Citrobacter freundii]
+APQNITELCSEYHNTQIYELNKEIKTYTESLAGYREMVIISFANGATFQVEVPGSQHLESQKRPLERMKDTLRAAYFTGIKVSKLCVWNNKTPNSIAAIE
+LSN
+>gi|224796281|gb|ACN62546.1| CFaB/LTB fusion protein [synthetic construct]
+APQSITELCSEYRNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTETKIDKLCVWNNKTPNSIAAIS
+MEN
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+T 1 1019 * * * * * * * * * * * * * * * 981 * * * 1
+ 0 * * * * * * 1310 0 0
+
+P 2 * * * * * * * * * * * * 0 * * * * * * * 2
+ 0 * * * * * * 1310 0 0
+
+Q 3 * * * * * * * * * * * * * 0 * * * * * * 3
+ 0 * * * * * * 1310 0 0
+
+N 4 * * * * * * * * * * * 421 * * * 1981 * * * * 4
+ 0 * * * * * * 1310 0 0
+
+I 5 * * * * * * * 0 * * * * * * * * * * * * 5
+ 0 * * * * * * 1310 0 0
+
+T 6 * * * * * * * * * * * * * * * * 0 * * * 6
+ 0 * * * * * * 1310 0 0
+
+D 7 * * 981 1019 * * * * * * * * * * * * * * * * 7
+ 0 * * * * * * 1310 0 0
+
+L 8 * * * * * * * * * 0 * * * * * * * * * * 8
+ 0 * * * * * * 1310 0 0
+
+C 9 * 0 * * * * * * * * * * * * * * * * * * 9
+ 0 * * * * * * 1310 0 0
+
+A 10 1981 * * * * * * * * * * 1981 * * * 1019 * * * * 10
+ 0 * * * * * * 1310 0 0
+
+E 11 * * * 0 * * * * * * * * * * * * * * * * 11
+ 0 * * * * * * 1310 0 0
+
+Y 12 * * * * * * * * * * * * * * * * * * * 0 12
+ 0 * * * * * * 1310 0 0
+
+H 13 * * * * * * 1019 * * * * * * 1981 1981 * * * * * 13
+ 0 * * * * * * 1310 0 0
+
+N 14 * * * * * * * * * * * 0 * * * * * * * * 14
+ 0 * * * * * * 1310 0 0
+
+T 15 * * * * * * * * * * * * * * * * 0 * * * 15
+ 0 * * * * * * 1310 0 0
+
+Q 16 * * * * * * * * * * 1981 * * 421 * * * * * * 16
+ 0 * * * * * * 1310 0 0
+
+I 17 * * * * * * * 0 * * * * * * * * * * * * 17
+ 0 * * * * * * 1310 0 0
+
+H 18 * * * * * * 1981 * * * * * * * * * * * * 421 18
+ 0 * * * * * * 1310 0 0
+
+T 19 * * * 2057 * * * * * * * * * * * 1981 981 * * * 19
+ 0 * * * * * * 1310 0 0
+
+L 20 * * * * * * * 1981 * 421 * * * * * * * * * * 20
+ 0 * * * * * * 1310 0 0
+
+N 21 * * * * * * * * * * * 0 * * * * * * * * 21
+ 0 * * * * * * 1310 0 0
+
+D 22 * * 981 * * * * * 1019 * * * * * * * * * * * 22
+ 0 * * * * * * 1310 0 0
+
+K 23 * * * 1019 * * * * 981 * * * * * * * * * * * 23
+ 0 * * * * * * 1310 0 0
+
+I 24 * * * * * * * 0 * * * * * * * * * * * * 24
+ 0 * * * * * * 1310 0 0
+
+F 25 1981 * * * 1981 * * * 2057 1981 * * * * * * * * * * 25
+ 0 * * * * * * 1310 0 0
+
+S 26 * * * * * * * * * * * * * * * 981 1019 * * * 26
+ 0 * * * * * * 1310 0 0
+
+Y 27 * * * * * * * * * * * * * * * * * * * 0 27
+ 0 * * * * * * 1310 0 0
+
+T 28 * * * * * * * * * * * * * * * * 0 * * * 28
+ 0 * * * * * * 1310 0 0
+
+E 29 * * * 0 * * * * * * * * * * * * * * * * 29
+ 0 * * * * * * 1310 0 0
+
+S 30 * * * * * * * * * * * * * * * 0 * * * * 30
+ 0 * * * * * * 1310 0 0
+
+L 31 * * * * * * * * * 421 1981 * * * * * * * * * 31
+ 0 * * * * * * 1310 0 0
+
+A 32 0 * * * * * * * * * * * * * * * * * * * 32
+ 0 * * * * * * 1310 0 0
+
+G 33 * * * * * 0 * * * * * * * * * * * * * * 33
+ 0 * * * * * * 1310 0 0
+
+K 34 * * * * * * * * 396 * * * * * * * * * * 2057 34
+ 0 * * * * * * 1310 0 0
+
+R 35 * * * * * * * * * * * * * * 0 * * * * * 35
+ 0 * * * * * * 1310 0 0
+
+E 36 * * * 0 * * * * * * * * * * * * * * * * 36
+ 0 * * * * * * 1310 0 0
+
+M 37 * * * * * * * * * * 0 * * * * * * * * * 37
+ 0 * * * * * * 1310 0 0
+
+A 38 1981 * * * * * * * * * * * * * * * * 421 * * 38
+ 0 * * * * * * 1310 0 0
+
+I 39 * * * * * * * 0 * * * * * * * * * * * * 39
+ 0 * * * * * * 1310 0 0
+
+I 40 * * * * * * * 0 * * * * * * * * * * * * 40
+ 0 * * * * * * 1310 0 0
+
+T 41 * * * * * * * * * * * * * * * 1019 981 * * * 41
+ 0 * * * * * * 1310 0 0
+
+F 42 * * * * 0 * * * * * * * * * * * * * * * 42
+ 0 * * * * * * 1310 0 0
+
+K 43 2057 * * * * * * * 981 * * * * * * 1981 * * * * 43
+ 0 * * * * * * 1310 0 0
+
+N 44 * * * * * * * * * * * 421 * * * 1981 * * * * 44
+ 0 * * * * * * 1310 0 0
+
+G 45 * * * * * 0 * * * * * * * * * * * * * * 45
+ 0 * * * * * * 1310 0 0
+
+A 46 0 * * * * * * * * * * * * * * * * * * * 46
+ 0 * * * * * * 1310 0 0
+
+T 47 * * * * * * * * * * * * * * * * 0 * * * 47
+ 0 * * * * * * 1310 0 0
+
+F 48 * * * * 0 * * * * * * * * * * * * * * * 48
+ 0 * * * * * * 1310 0 0
+
+Q 49 * * * * * * * * * * * * * 0 * * * * * * 49
+ 0 * * * * * * 1310 0 0
+
+V 50 * * * * * * * * * * * * * * * * * 0 * * 50
+ 0 * * * * * * 1310 0 0
+
+E 51 * * * 0 * * * * * * * * * * * * * * * * 51
+ 0 * * * * * * 1310 0 0
+
+V 52 * * * * * * * * * * * * * * * * * 0 * * 52
+ 0 * * * * * * 1310 0 0
+
+P 53 * * * * * * * * * * * * 0 * * * * * * * 53
+ 0 * * * * * * 1310 0 0
+
+G 54 * * * * * 0 * * * * * * * * * * * * * * 54
+ 0 * * * * * * 1310 0 0
+
+S 55 * * * * * * * * * * * * * * * 0 * * * * 55
+ 0 * * * * * * 1310 0 0
+
+Q 56 * * * * * * * * * * * * * 0 * * * * * * 56
+ 0 * * * * * * 1310 0 0
+
+H 57 * * * * * * 0 * * * * * * * * * * * * * 57
+ 0 * * * * * * 1310 0 0
+
+I 58 * * * * * * * 981 * 1019 * * * * * * * * * * 58
+ 0 * * * * * * 1310 0 0
+
+D 59 * * 981 1019 * * * * * * * * * * * * * * * * 59
+ 0 * * * * * * 1310 0 0
+
+S 60 * * * * * * * * * * * * * * * 0 * * * * 60
+ 0 * * * * * * 1310 0 0
+
+Q 61 * * * * * * * * * * * * * 0 * * * * * * 61
+ 0 * * * * * * 1310 0 0
+
+K 62 * * * * * * * * 0 * * * * * * * * * * * 62
+ 0 * * * * * * 1310 0 0
+
+K 63 * * * * * * * * 981 * * * * * 1019 * * * * * 63
+ 0 * * * * * * 1310 0 0
+
+A 64 981 * * * * * * * * * * * 1019 * * * * * * * 64
+ 0 * * * * * * 1310 0 0
+
+I 65 * * * * * * * 981 * 1019 * * * * * * * * * * 65
+ 0 * * * * * * 1310 0 0
+
+E 66 * * * 0 * * * * * * * * * * * * * * * * 66
+ 0 * * * * * * 1310 0 0
+
+R 67 * * * * * * * * * * * * * * 0 * * * * * 67
+ 0 * * * * * * 1310 0 0
+
+M 68 * * * * * * * * * * 0 * * * * * * * * * 68
+ 0 * * * * * * 1310 0 0
+
+K 69 * * * * * * * * 0 * * * * * * * * * * * 69
+ 0 * * * * * * 1310 0 0
+
+D 70 * * 0 * * * * * * * * * * * * * * * * * 70
+ 0 * * * * * * 1310 0 0
+
+T 71 * * * * * * * * * * * * * * * * 0 * * * 71
+ 0 * * * * * * 1310 0 0
+
+L 72 * * * * * * * * * 0 * * * * * * * * * * 72
+ 0 * * * * * * 1310 0 0
+
+R 73 * * * * * * * * * * * * * * 0 * * * * * 73
+ 0 * * * * * * 1310 0 0
+
+I 74 1019 * * * * * * 981 * * * * * * * * * * * * 74
+ 0 * * * * * * 1310 0 0
+
+A 75 0 * * * * * * * * * * * * * * * * * * * 75
+ 0 * * * * * * 1310 0 0
+
+Y 76 * * * * * * * * * * * * * * * * * * * 0 76
+ 0 * * * * * * 1310 0 0
+
+L 77 * * * * 1019 * * * * 981 * * * * * * * * * * 77
+ 0 * * * * * * 1310 0 0
+
+T 78 * * * * * * * * * * * * * * * * 0 * * * 78
+ 0 * * * * * * 1310 0 0
+
+E 79 * * * 981 * 1019 * * * * * * * * * * * * * * 79
+ 0 * * * * * * 1310 0 0
+
+A 80 1981 * * * * * * 1019 * * * * * * * * 1981 * * * 80
+ 0 * * * * * * 1310 0 0
+
+K 81 * * * * * * * * 0 * * * * * * * * * * * 81
+ 0 * * * * * * 1310 0 0
+
+V 82 * * * * * * * 981 * * * * * * * * * 1019 * * 82
+ 0 * * * * * * 1310 0 0
+
+E 83 * * 1981 1981 * * * * * * * * * * * 1019 * * * * 83
+ 0 * * * * * * 1310 0 0
+
+K 84 * * * * * * * * 0 * * * * * * * * * * * 84
+ 0 * * * * * * 1310 0 0
+
+L 85 * * * * * * * * * 0 * * * * * * * * * * 85
+ 0 * * * * * * 1310 0 0
+
+C 86 * 0 * * * * * * * * * * * * * * * * * * 86
+ 0 * * * * * * 1310 0 0
+
+V 87 1981 * * * * * * * * * * * * * * * * 421 * * 87
+ 0 * * * * * * 1310 0 0
+
+W 88 * * * * * * * * * * * * * * * * * * 0 * 88
+ 0 * * * * * * 1310 0 0
+
+N 89 * * * * * * * * * * * 421 * * * * 1981 * * * 89
+ 0 * * * * * * 1310 0 0
+
+N 90 * * * * * * * * * * * 0 * * * * * * * * 90
+ 0 * * * * * * 1310 0 0
+
+K 91 * * * * * * * * 0 * * * * * * * * * * * 91
+ 0 * * * * * * 1310 0 0
+
+T 92 * * * * * * * * * * * * * * * 1981 421 * * * 92
+ 0 * * * * * * 1310 0 0
+
+P 93 * * * * * * * * * * * * 0 * * * * * * * 93
+ 0 * * * * * * 1310 0 0
+
+H 94 * * * * * * 1981 * * * * 421 * * * * * * * * 94
+ 0 * * * * * * 1310 0 0
+
+A 95 1981 * * * * * * * * * * * * * * 421 * * * * 95
+ 0 * * * * * * 1310 0 0
+
+I 96 * * * * * * * 0 * * * * * * * * * * * * 96
+ 0 * * * * * * 1310 0 0
+
+A 97 0 * * * * * * * * * * * * * * * * * * * 97
+ 0 * * * * * * 1310 0 0
+
+A 98 0 * * * * * * * * * * * * * * * * * * * 98
+ 0 * * * * * * 1310 0 0
+
+I 99 * * * * * * * 0 * * * * * * * * * * * * 99
+ 0 * * * * * * 1310 0 0
+
+S 100 * * * 1019 * * * * * * * * * * * 981 * * * * 100
+ 0 * * * * * * 1310 0 0
+
+M 101 * * * * * * * * * 1019 981 * * * * * * * * * 101
+ 0 * * * * * * 1310 0 0
+
+A 102 1981 * * 1981 * * * * * * * * * * * 1019 * * * * 102
+ 0 * * * * * * 1310 0 0
+
+N 103 * * * * * * * * * * * 0 * * * * * * * * 103
+ 0 * * 0 * * * 1310 0 0
+
+//
+�HHsearch 1.5
+NAME a58e5f77fe5c98ba022ce3bec19b5c22
+FAM
+FILE a58e5f77fe5c98ba022ce3bec19b5c22
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:13:32 2013
+LENG 105 match states, 105 columns in multiple alignment
+FILT 130 out of 1048 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHHHH
+HHHHC
+>ss_conf PSIPRED confidence values
+9799528889999998518981999998899857999999999999987897899997787899999849985228999989979999758997999999
+99759
+>Consensus
+xxxxxxxxxxxxxxlxxxxxxxxvvxfxxxxcxxCxxxxxxxxxxxxxxxxixxxxvxxdxxxxxxxxxxvxxxPxxxxxxxgxxxxxxxgxxxxxlxxx
+lxxxl
+>a58e5f77fe5c98ba022ce3bec19b5c22
+MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEAT
+INELV
+>gi|304384645|ref|ZP_07366991.1| thioredoxin-disulfide reductase [Pediococcus acidilactici DSM 20284]gi|304328839|gb|EFL96059.1| thioredoxin-disulfide reductase [Pediococcus acidilactici DSM 20284]
+----LTEEKQLAQILNDF-DAKVAFIFFNPYESQDIDQATKFEN---ALVEkYKVYRQDVSHQTVLFNQLKLNHTVVAALYEHGQL-------tkIINSi
+EELEK----
+>gi|118386291|ref|XP_001026265.1| hypothetical protein TTHERM_01367670 [Tetrahymena thermophila]gi|89308032|gb|EAS06020.1| hypothetical protein TTHERM_01367670 [Tetrahymena thermophila SB210]
+--VAVVSSLNFIKLVQKtKETTktVQVLHFYKMNDGHSTRIAKEVDSLANQYRGiFQFGAVNCGEEPTICEKEKITQFPTVRVYpPLPLPSIDIEVPads
+LVsNDILKLASRYI
+>gi|32491289|ref|NP_871543.1| hypothetical protein WGLp540 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis]gi|25166496|dbj|BAC24686.1| grxC [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis]
+-----------------------VEIYIKSTCSFCVKAKNLLKQNNIKFKEIFVEN-STANLSKMIKRSKKTTVPQIFI--NKVHIG---GYEDLIIFLK
+KN---
+>gi|152967281|ref|YP_001363065.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Kineococcus radiotolerans SRS30216]gi|151361798|gb|ABS04801.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Kineococcus radiotolerans SRS30216]
+---PgavVPDQHGERLPLRELWAqGPALLVLVpAAFSTHCTAELGALAFEIERFDAagVQLAALSCDPvtslrawgedrvypfpllsdfwpHGAVSRALG
+AFdedlgvAQRLSLLVVDGTVRWSLRGDLGapRSLKRHLAAL-
+>gi|116694462|ref|YP_728673.1| hypothetical protein H16_B0511 [Ralstonia eutropha H16]gi|113528961|emb|CAJ95308.1| conserved hypothetical protein [Ralstonia eutropha H16]
+--------ASAAQLAASQQGKPFVLVVWSLDCVYCKRNFDTIGKLRAQHPNLRVVTLATDNpdaLPQVQQLLQRVRLT--------RNAWVFGHEPQERL
+RYAVD---
+>gi|325281368|ref|YP_004253910.1| Thioredoxin domain-containing protein [Odoribacter splanchnicus DSM 20712]gi|324313177|gb|ADY33730.1| Thioredoxin domain-containing protein [Odoribacter splanchnicus DSM 20712]
+-MKYIYSFEEALKKARE-VNKPIFVNCFADWAVPCHGMNQLVfsdQQFADWMDRhFVNLFIDIttNEGRPLATKYNTLQMAHYIVLdQDGNLIYRIVGGH
+QlPEFQELLAKSL
+>gi|195052497|ref|XP_001993310.1| GH13139 [Drosophila grimshawi]gi|193900369|gb|EDV99235.1| GH13139 [Drosophila grimshawi]
+-VKELSD-DNFEHLTQASTGattGDWFIFFYSAECVLCQRLYAVWEAVGGTLRRkINVARMNSLTAGmGTAQRLKIAEAPEFVFLRLGKLYRYPLKDyTP
+KAFIEFVED--
+>gi|269119723|ref|YP_003307900.1| NADH dehydrogenase [Sebaldella termitidis ATCC 33386]gi|268613601|gb|ACZ07969.1| NADH dehydrogenase [Sebaldella termitidis ATCC 33386]
+-----NIVKQLKGFFDKITEDIKIISF--lSESDKSKELDSFLNEVADISDSIKYESYMFGSNNKLEELYGIKReTAFTIVK-NNEkTGINFFGIPGgHE
+FNSFVLAIL
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 3634 * * * * * * * 3675 3596 585 3444 * * * * * * * * 1
+ 122 3629 * 2807 222 * * 5913 1069 0
+
+V 2 4434 * * 4524 4033 * 5380 2828 * 2621 2130 * * 5401 * 5414 * 2145 * 5629 2
+ 30 5595 * 1000 1000 * * 9128 1015 0
+
+K 3 * * 5732 3972 * * 4966 1883 3477 4261 * * * 2987 4251 4883 3696 2582 * 5983 3
+ 0 * * * * * * 9559 0 0
+
+Q 4 3865 * 3445 1829 6137 5225 6173 * 3610 * 6322 4015 5265 4250 4035 4690 3589 3823 * 6071 4
+ 25 5873 * 3398 144 * * 9932 1227 0
+
+I 5 4577 * * 4282 4034 * * 2217 * 1687 4240 * * 5219 * * 5409 2206 * * 5
+ 19 6254 * 0 * * * 10110 1015 0
+
+E 6 5376 * 6306 4106 6447 6106 5247 3821 3978 4022 * 3020 5266 3792 5485 3207 2241 3624 * 6338 6
+ 18 * 6372 * * * * 10166 0 0
+
+S 7 4837 5602 2241 3658 * 4257 * 5536 5620 6452 * 2585 5599 5693 * 2644 2629 * 5655 * 7
+ 44 * 5071 * * 0 * 10452 0 1017
+
+K 8 4697 * 3444 3146 4364 4052 5559 4076 3571 3255 6781 5898 3242 4962 5013 4101 4299 4587 4917 * 8
+ 16 6544 * 0 * 0 * 10452 1002 1355
+
+T 9 3156 * 2711 2567 * 4470 5706 6745 2741 3900 * 3868 4792 4746 4726 4226 4927 6608 * * 9
+ 0 * * * * * * 10586 0 0
+
+A 10 3891 * 2665 2608 5165 3010 5983 * 6452 5130 5774 3458 * 3378 5199 4269 3294 6860 * 6960 10
+ 23 5998 * 0 * * * 10676 1196 0
+
+F 11 4075 * 6732 5134 1958 * 6486 3629 4213 2511 6708 * 5791 4893 7009 6538 5296 4058 4750 3040 11
+ 16 * 6528 * * * * 10676 0 0
+
+Q 12 3295 * 2915 2563 5697 6054 4380 4790 4064 4714 6552 3548 5244 3498 4040 4614 4701 5117 * * 12
+ 13 6804 * 2000 415 0 * 10624 1002 1030
+
+E 13 3849 * 3041 2985 6563 5798 4638 4704 2582 4805 6614 4565 * 3165 4730 4080 4327 5406 * 4686 13
+ 13 * 6821 * * * * 10681 0 0
+
+A 14 3130 * 5124 5284 3722 4905 4740 3549 3909 3042 5720 5823 7017 4241 4036 3806 4045 3172 * 6618 14
+ 0 * * * * * 0 10705 0 1010
+
+L 15 4477 * 6917 6969 5993 * * 2491 5799 1356 3603 6533 * 5760 6033 5249 5219 2769 * 6630 15
+ 38 5255 * 715 1356 * 0 10710 1466 1010
+
+D 16 2387 * 3793 3748 5693 4547 6857 5825 2872 3389 5837 4268 * 3855 4208 3397 4532 * * 6489 16
+ 448 5216 2060 490 1797 * 0 10710 1399 1010
+
+A 17 3028 * 3069 2528 * 5726 5505 6405 3453 6605 * 3385 5079 2928 4784 3398 5071 * * 6275 17
+ 214 3378 4591 592 1571 2141 371 10448 2414 5282
+
+A 18 3482 5700 4957 6219 3718 4820 5766 3779 3674 3469 6382 4028 3940 5597 6811 2695 4416 5060 6736 3925 18
+ 239 6583 2814 0 * 337 2263 10526 1000 4947
+
+G 19 3583 * 4158 3344 6619 3899 6684 * 2435 5535 * 3282 4432 3899 3662 3261 4331 5689 * * 19
+ 13 6753 * 4248 78 0 * 10677 1000 4013
+
+D 20 4687 * 3708 3646 * 2208 * * 3097 5904 * 2712 3678 4210 5252 3666 4376 5887 * * 20
+ 34 5986 7105 961 1040 * * 10761 1158 0
+
+K 21 5347 * 3630 3263 6863 5120 * * 1659 * * 4282 4327 3868 3193 4073 5441 5004 * 4511 21
+ 62 5981 5270 1000 1000 0 * 10751 1166 1000
+
+L 22 4892 5869 4902 6924 5194 5745 4512 3961 3591 2888 5826 4976 2526 5185 5897 7034 3966 3023 6030 4101 22
+ 0 * * 0 * 549 1660 10739 1092 1481
+
+V 23 3527 6690 5914 5730 6070 6003 6578 3145 3863 3398 * 4410 * 6951 * 4769 3081 1733 6070 5329 23
+ 39 5211 * 0 * 0 * 10737 1415 1024
+
+V 24 4545 5334 * * 3335 * 6628 2427 * 1868 5057 * * * * 6978 5850 1859 6878 5400 24
+ 0 * * * * * * 10797 0 0
+
+V 25 4359 * * 6007 5298 * * 2216 5912 1796 5922 * * * * 5981 6998 1648 * 5002 25
+ 0 * * * * * * 10788 0 0
+
+D 26 3985 6876 4269 5002 2976 5322 4262 3934 7049 2682 4479 4084 * 4682 6080 5336 6068 4006 * 2710 26
+ 0 * * * * * * 10801 0 0
+
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+
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+ 125 3587 * 1174 844 * 0 10774 2782 1198
+
+A 29 2513 6874 3828 4198 5399 3733 6715 5300 4419 4625 5254 4982 * 4245 4040 2357 3945 5967 7169 5973 29
+ 26 5808 * 1586 585 0 * 10774 1582 1198
+
+T 30 3491 * 3025 3030 6596 6029 5351 7276 4866 5018 7007 4385 2529 4840 5953 3313 3535 4237 7089 5888 30
+ 23 6760 7264 1000 1000 * * 10801 1069 0
+
+W 31 5781 7092 3356 4386 4669 3346 5415 5408 7041 * 6937 3334 6963 7052 4720 3416 3900 5916 1943 4699 31
+ 24 6739 7105 0 * 0 * 10797 1069 1000
+
+C 32 5568 653 4447 5809 6722 7261 6660 * 5395 5472 * 5411 * 6937 6694 3142 4838 6978 * 6721 32
+ 0 * * * * * 0 10788 0 1000
+
+G 33 3300 7087 4585 3758 5440 2867 4730 4939 3785 4041 * 7040 2283 5609 4947 3887 5513 4402 * 6788 33
+ 0 * * * * * 0 10788 0 1000
+
+P 34 4483 * 4107 3794 4215 4287 3847 5213 4207 4662 4911 5246 3058 4575 6722 4076 4923 4536 7077 2679 34
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+
+A 35 5581 532 5807 7097 6956 5458 7264 7089 7108 * 6813 * * * * 2573 6997 7077 * 5778 35
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+
+K 36 3790 * 4459 3984 6752 7049 4042 4119 2770 4401 5126 5059 4737 3256 2852 4934 4646 4160 7009 6115 36
+ 0 * * * * * * 10801 0 0
+
+M 37 3140 6791 3821 3585 7108 4374 5459 3928 3194 5010 4468 4430 5948 3559 3287 4965 4785 4349 6300 6148 37
+ 0 * * * * * * 10801 0 0
+
+I 38 2670 6813 5938 3709 2734 * * 3486 6816 2392 3645 4683 * 4117 5899 7001 5184 4117 * 5949 38
+ 0 * * * * * * 10801 0 0
+
+K 39 3300 5364 4355 3930 5957 4980 4893 4941 3748 3187 3497 4962 * 4638 3474 3543 5183 4500 * 4232 39
+ 24 * 5944 * * * * 10801 0 0
+
+P 40 4727 * 4270 3538 * 6958 5961 5779 2946 4671 6033 5145 1868 3613 3449 3977 4738 5566 * * 40
+ 23 6958 7053 0 * 0 * 10786 1000 1199
+
+F 41 3165 7200 5384 3241 4450 5207 4851 4486 4165 3669 5784 5171 * 3760 5292 4611 3271 2930 * 4487 41
+ 21 6105 * 966 1035 * 0 10779 1196 1015
+
+F 42 4743 * * * 2504 * * 2940 * 1540 4523 * * * * 6979 5097 3113 4232 3993 42
+ 107 3968 7100 1737 514 * 0 10779 2405 1015
+
+H 43 4747 * 3512 2529 * 4676 5676 5185 3220 4934 5018 3393 4571 3534 3964 3542 5039 4878 7189 * 43
+ 10 7149 * 634 1492 0 * 10775 1182 1183
+
+S 44 3369 * 3547 2530 * 5422 6146 * 2973 4959 4969 3738 5501 3294 3988 3724 4738 4945 6960 * 44
+ 37 7036 5797 1585 585 * * 10801 1000 0
+
+L 45 3284 * 6690 5448 3682 * * 2902 6791 1556 4509 5471 6913 5403 6966 * 5964 2831 4918 6976 45
+ 25 6736 7048 1000 1000 * 0 10759 1023 1263
+
+S 46 1669 * 6957 4303 5537 4644 7170 3877 4791 3832 4748 7189 4184 4485 5491 3063 * 5044 * 3880 46
+ 11 * 7045 * * * 0 10745 0 1461
+
+E 47 3075 6938 3157 3140 * 4676 5868 5402 3089 5171 6823 3359 4914 3636 3725 3696 4870 7080 * 6912 47
+ 0 * * 0 * 409 2018 10739 1000 1618
+
+K 48 3571 * 3203 2944 * 5453 5003 4609 2612 3583 5027 4402 5557 3773 5337 3729 4399 * 6952 7059 48
+ 51 5196 7077 1727 519 * 0 10788 1431 1012
+
+Y 49 5246 6033 * 7033 2866 6957 3797 4371 7156 2646 4984 4183 * 5790 6800 4165 4469 3489 5340 2395 49
+ 53 6063 5553 1574 591 991 1009 10784 1205 1217
+
+S 50 3835 * 3483 3351 * 4033 5326 * 3047 * * 4665 2672 4098 3549 3571 3944 4735 * 6863 50
+ 78 4240 * 1498 630 0 * 10787 2092 1496
+
+N 51 3964 * 2703 3427 5962 3067 4611 6980 3028 7097 * 2767 4467 4615 4505 3936 6028 7000 6679 * 51
+ 1448 658 * 783 1255 * * 10801 9166 0
+
+V 52 3694 5517 * 5422 3618 6767 * 1898 5866 2463 7072 7077 * * * 5933 3865 2460 6046 5412 52
+ 12 * 6925 * * * * 10801 0 0
+
+I 53 4391 6288 3645 3540 5036 5361 4511 6363 2940 4257 5815 4564 6969 4737 3839 4759 3150 3050 * 4860 53
+ 0 * * * * 0 * 10785 0 1012
+
+F 54 5116 5270 * * 1656 * 5290 2855 * 3228 5495 6102 7216 * 5842 5300 * 2478 4800 4169 54
+ 104 4534 5238 5765 27 * * 10801 1854 0
+
+L 55 3437 5323 * 4721 4745 4870 5792 2948 4660 2850 4961 5869 * 6729 5029 * 4904 2899 * 2392 55
+ 23 6944 7026 2000 415 * 0 10768 1000 1500
+
+E 56 3826 6954 6199 4097 4629 3681 6748 4594 3564 4025 4151 5018 4549 4439 3540 3718 4233 3660 5302 4689 56
+ 11 * 7082 * * 385 2095 10764 0 1676
+
+V 57 3932 5867 * * 6196 7091 * 2037 * 2430 4031 * * 5695 5943 6979 5996 1697 * 4697 57
+ 10 * 7192 * * 1090 915 10791 0 1198
+
+D 58 5964 6078 1584 3577 5852 5408 5419 7042 7377 * 6956 2328 5000 5580 6883 2974 4695 5683 * 5578 58
+ 77 5068 5492 5107 42 * 0 10775 1593 1207
+
+V 59 3164 4106 5277 6609 4493 4594 7165 2997 5184 3121 6875 6667 6764 5869 4888 3442 3980 2519 * 5291 59
+ 101 4273 5997 3186 168 2319 323 10767 2191 1765
+
+D 60 6070 * 1356 2732 6893 4202 6809 * 5320 4584 * 3499 5284 5895 6726 3094 5430 * * 5324 60
+ 116 4003 6076 3096 179 620 1518 10757 2302 1925
+
+D 61 4792 * 2832 2985 * 5332 4462 4917 3182 4460 5998 3716 5985 3834 4263 3792 3635 4973 6779 6073 61
+ 225 2794 * 4098 87 1981 421 10751 3936 1568
+
+A 62 3735 6870 3370 3656 4730 3803 3079 5429 5026 4029 * 2753 5418 4982 5962 4178 4941 4274 7032 5014 62
+ 50 5232 7083 2261 337 1683 538 10760 1610 1380
+
+Q 63 4266 6763 3893 3860 4785 3482 5490 6802 4109 4232 5337 3783 2379 4034 3760 4285 4628 6826 * 6724 63
+ 119 4015 5848 3176 169 0 * 10776 2195 1384
+
+D 64 3482 * 3372 2277 6693 4151 5358 4917 3514 5022 6948 4826 3905 4766 4107 3742 4325 5709 * 5871 64
+ 23 6004 * 3993 94 * 0 10779 1163 1387
+
+V 65 4437 6003 5254 4401 3333 7188 * 2656 5452 2002 4699 6074 6903 * 5449 7057 3833 2908 5915 6026 65
+ 12 * 6970 * * 1444 661 10779 0 1387
+
+A 66 2137 3629 6974 4995 3343 4464 * 3405 6669 3742 4387 5893 5539 6038 4949 4354 7060 3392 5155 5955 66
+ 19 6262 * 2150 368 594 1567 10791 1148 1362
+
+S 67 3704 * 3403 3108 * 5363 * 5444 2302 5559 5786 4164 5974 3760 3390 3623 3830 7184 6939 5967 67
+ 36 6629 6094 1000 1000 * 0 10797 1049 1000
+
+E 68 3547 * 4702 3339 5800 6910 * 4673 2752 4452 5870 4116 5725 3135 2900 4974 3237 6863 * 5075 68
+ 42 5597 6930 3580 126 1594 581 10774 1324 1376
+
+A 69 4035 * 5346 4706 2172 * 5454 5137 4972 2653 4874 7053 6879 4996 6765 * 5628 6068 6018 1884 69
+ 47 4959 * 2144 370 569 1617 10773 1593 1381
+
+E 70 4437 * 3366 4009 * 1900 6629 5781 3124 5961 6906 3127 4903 4287 4919 3977 4616 * 6103 6900 70
+ 42 5603 6886 0 * * 0 10797 1297 1000
+
+V 71 4142 5798 7192 5498 5983 6099 * 1864 * 3354 7139 4657 4223 5915 6044 6868 4652 1751 7091 6846 71
+ 51 5222 6945 2884 210 950 1052 10779 1443 1198
+
+K 72 3977 6899 5029 3098 3762 4542 4164 * 3530 4437 4929 4523 4703 4080 4138 3706 2994 4546 * * 72
+ 123 3921 5982 3418 142 1007 993 10782 2413 1182
+
+A 73 3198 6964 5012 4662 4909 2735 4640 4859 4460 4959 5963 5272 5897 5407 4331 2212 4000 4656 * 5211 73
+ 81 4741 5848 2243 342 1540 608 10769 1741 1406
+
+T 74 4446 6017 * 5854 3847 7042 6051 3340 5931 2372 5901 7020 5189 6563 * 6682 2919 2153 6652 3614 74
+ 0 * * * * 958 1043 10738 0 1609
+
+P 75 5319 * * 6703 * 6591 6897 * 7189 5251 * * 228 * 5407 6791 5881 6646 * * 75
+ 52 4827 * 825 1199 932 1071 10775 1625 1203
+
+T 76 3457 5000 5802 5404 4532 6041 4683 7039 5966 4728 4920 6852 * 4688 6190 2982 1605 3622 6922 4699 76
+ 11 * 7068 * * 0 * 10797 0 1000
+
+F 77 4047 * * 6732 2703 6695 * 3050 * 1856 4826 6895 6984 * 6765 5809 3553 2660 5931 4988 77
+ 23 * 5989 * * 0 * 10788 0 1012
+
+Q 78 4267 7037 * 6056 3355 6382 5651 2747 5093 2481 4629 * * 4802 5405 * 5655 2250 5915 3445 78
+ 0 * * * * 755 1295 10785 0 1286
+
+F 79 4150 5849 * * 2452 6967 5449 2415 7034 2407 5371 * * 7028 6620 4722 * 2413 6101 4418 79
+ 93 6954 4205 2585 263 * 0 10783 1010 1004
+
+F 80 5587 6557 6652 5315 2544 5279 6920 2634 6776 2569 6865 5381 * * 6835 5439 5906 3584 6600 2220 80
+ 580 1720 5184 169 3178 2994 194 10753 6226 2289
+
+K 81 3441 * 4638 2820 6903 3958 4838 5026 2485 5906 * 3884 4643 4101 3337 5075 5859 4343 * 5003 81
+ 36 5902 6984 1000 1000 322 2320 10718 1192 2672
+
+K 82 5581 * 1943 3302 7006 3739 4932 * 3139 4918 7057 2333 5463 5867 4227 4960 5943 6966 * * 82
+ 25 6799 6932 1461 651 603 1549 10786 1211 1372
+
+G 83 4338 6523 4376 5557 6216 1005 7004 * 5007 6842 6693 3597 4805 4727 4489 4213 5016 * * 5994 83
+ 16 6523 * 3000 193 976 1024 10779 1037 1189
+
+Q 84 6068 * 3674 3359 7000 4988 5562 7255 2862 5937 6981 2852 5878 2977 3115 3857 3661 4861 * * 84
+ 56 4705 * 789 1247 * 0 10784 1684 1000
+
+K 85 5066 6691 * 2915 4537 5578 6931 3104 3769 3011 4521 5935 3828 * 3920 5707 5323 2535 7139 5519 85
+ 50 7073 5248 2000 415 * 0 10784 1000 1000
+
+V 86 4932 * 5054 5734 5158 4572 * 2787 5017 3112 4172 5964 4985 5281 4343 4650 3975 2093 * 4607 86
+ 63 5237 5954 445 1915 2242 343 10733 1400 1678
+
+G 87 3245 5771 3225 3523 4624 4102 4145 4019 3225 4071 6880 4919 4730 4851 6123 7070 4942 4373 5865 3939 87
+ 34 5444 * 2819 221 2034 404 10742 1350 1845
+
+E 88 3968 * 4983 3866 6950 4206 * 4028 3927 5286 5974 4185 6682 3660 2123 4144 4709 3138 * 5420 88
+ 36 6961 5910 0 * 501 1770 10757 1030 1601
+
+F 89 4748 5892 4233 4385 2824 5163 3393 3414 4402 3638 5391 7268 6128 7060 5015 4600 6968 3954 5406 2849 89
+ 22 6051 * 1886 455 * 0 10736 1229 1453
+
+S 90 4297 6874 4727 3849 3995 4633 5084 3326 4961 4453 6873 4768 5416 4842 4732 3459 3374 2707 6860 4917 90
+ 54 5138 6876 1000 1000 650 1463 10736 1413 1453
+
+G 91 3691 * 3644 4000 5337 1079 5985 * 4353 5396 * 4430 7129 5017 6086 5246 5909 5282 * 5281 91
+ 23 5984 * 940 1063 * 0 10737 1191 1234
+
+A 92 3883 6872 5911 3942 4171 5883 * 3789 5380 3336 5963 4310 3076 4923 4412 3530 4241 3536 6815 3744 92
+ 195 3080 6902 595 1565 0 * 10703 3460 1234
+
+N 93 4369 * 3356 4821 6020 4886 5268 5244 3858 3697 4709 3149 3724 6997 4097 2903 3818 4583 * 4982 93
+ 50 4886 * 1233 799 0 * 10729 1623 1000
+
+K 94 3685 6868 4362 3506 5774 4461 5855 4562 4242 7015 7131 5024 2193 5943 4418 3127 3599 4278 * 5314 94
+ 1158 857 * 198 2965 * 0 10725 8419 1032
+
+E 95 3883 * 3044 1995 7144 4889 5205 6065 3594 5924 5393 3666 4356 4600 4919 3515 4182 6682 * * 95
+ 0 * * * * * 0 10713 0 1032
+
+K 96 3919 * 2882 2468 5206 6051 5283 6959 3558 4799 5946 3857 6682 3081 5487 3706 3763 5255 * 6825 96
+ 28 5698 * 1024 976 0 * 10713 1452 1032
+
+L 97 4559 * * 6547 3286 6758 * 1896 * 1528 4595 * 5784 * * 7123 5664 3462 5271 5899 97
+ 12 6906 * 0 * * * 10711 1000 0
+
+E 98 4861 6946 4565 2780 5507 6849 4758 4149 3071 2993 5080 5045 * 3637 4196 4078 4606 3743 7043 5399 98
+ 0 * * * * * * 10698 0 0
+
+A 99 3229 * 3697 2660 * 5763 5957 5195 3350 4620 6598 3104 5923 3628 4392 3925 3511 6661 * 5474 99
+ 0 * * * * * * 10698 0 0
+
+T 100 2976 6619 * 4481 2633 * 5977 4031 4056 2514 4735 6991 * 5066 5578 5860 5137 3874 3617 4241 100
+ 0 * * * * * * 10694 0 0
+
+I 101 4038 * * * 5022 * * 1888 5773 1456 6156 * * * 6704 6867 5871 2450 * 5431 101
+ 39 5214 * 642 1478 * * 10692 1376 0
+
+N 102 3505 * 2611 2485 * 5869 4866 * 3499 4466 * 4082 * 4274 3420 3363 4171 5713 * 6862 102
+ 0 * * * * * * 10554 0 0
+
+E 103 3020 * 3856 3299 4834 5624 5502 5673 2467 5024 * 4029 * 3239 3037 3963 5446 6526 * 6578 103
+ 0 * * * * * * 10508 0 0
+
+L 104 2893 6076 * 6395 3855 * 4047 2862 5294 2139 * 4678 * 5450 4720 4787 5209 3606 * 3763 104
+ 0 * * * * * * 10312 0 0
+
+V 105 4723 * * * 4610 * * 2662 5690 925 4036 * * * * 5551 * 4745 5600 3697 105
+ 0 * * 0 * * * 9481 0 0
+
+//
+�HHsearch 1.5
+NAME a7297e082b04c39b5ed5edf7a5889375
+FAM
+FILE a7297e082b04c39b5ed5edf7a5889375
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:31:46 2013
+LENG 228 match states, 228 columns in multiple alignment
+FILT 130 out of 1369 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEC
+CCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCCEEEEE
+EEECCCCEEEEEEEEECCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9289586858997899899999964888888679999928999828999995368850215666873899853778713799825740026679999970
+6874412212677786112125413414874200379858999994465799769998898435763110358629978999999995145579779999
+9948898679999920679899898999
+>Consensus
+xxxxxxpxxxxvxxGxxvtLxCxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxsLxIxxvxxxDxGxYxCxvxx
+xxxxxxxxxxxxlxVxxxxxxxpxvxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxxxxxxxxxxxxxxxxxgxxxxxsxlxixxxxxdxgxyxCx
+vxxxxxxxxxxxxxxxxxxxxxxxxxxx
+>a7297e082b04c39b5ed5edf7a5889375
+QVQLQQPGAELVKPGASVKLSCKASGYTFTSSWINWVKQRPGQGLEWIGNVYPGSSSTNYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAFYYCVRKD
+YSWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCN
+VAHPASSTKVDKKIEPRGPTIKPCPPCK
+>gi|2707433|gb|AAB92274.1| T-cell receptor gamma chain Vg2-Jg1 [Gallus gallus]
+---------ITMSRVNT-DLKCHFKdfSGNFDNTVIHWYQQKENKAPVRMIYFTSG--RTKVNESFQRhRYRIQTIPTQRLCTLTIRNVIPDDAATYYCA
+YWDprRILLQSFRLWYKAHCIRQRKFSTREL---------------------------------------------------------------------
+---------------------------------
+>gi|149632037|ref|XP_001512632.1| PREDICTED: similar to T cell receptor gamma chain [Ornithorhynchus anatinus]
+---------------------------------------------------------------------------STVSGVKYFGTGTKLVVTGFKHCaL
+QsGAYIKVFGSGTKLIVENTtpqln-----DPIQFYPTSLERKqQNTETYVCLFKDFFPDVIRMHWKEEgsdKILESQ-QSDPLPVNGKYWQMSWLTVKK
+SPP-GKIYRLIYKHEK-t-GPAGKEE--------------
+>gi|334323375|ref|XP_001366403.2| PREDICTED: butyrophilin subfamily 2 member A2-like [Monodelphis domestica]
+QFTVVAPAKPLlVMVGEDAILHCHLFPKKNAEQmEVRWFRSQFSPAIY--VYKDGKNRDEEQMEEYRSRTTFMRDNiKDGSVALKIHNVTAFENGRYHCY
+FQEG---RSYDEAFIDLKVASMGSDPLIEI-----TGYEYGWIQLECTSAGWYPQP-RVEWrnLSEETIPSLEENLVPSEDGLFIVKLSVNITDHT--VV
+SVFCSIQNSLLSQELLAMMSIPE----------
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+--------------------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAAQN----------
+----tqrkweaagvaeqw----RAYlEGECLEWLRRYLEKGK-----------------et--LQ--raEPs-SQSTIP-----
+>gi|190340181|gb|AAI62589.1| Mcam protein [Danio rerio]
+--------------KGQAKISCTYT-LTEEAKMIIWFtkLPGKDQNRKRFYYSENQT--eiIDQNHEYAERIKVSHS-----YDteeergsvvLILDDVQ
+LTDEREFICMVHSvLN--DVGEGRTHLKIY--NSPSLPVIERE-----htgisvsETEPSKVAQCKVDDGYPRP-NITWyKGSfpldPSDGEVKILESVT
+VkpSGLFRVESELHIKVKKEDeGAHFYCEVKYLMLGKARMTESSR------------
+>gi|189235128|ref|XP_972469.2| PREDICTED: similar to sticks and stones CG33141-PA [Tribolium castaneum]
+---VATSENVVVNPNEDATLSCTADGNPLSDDTITWKR---DDFPDFD-----------------ARtSVMYDK--NGTSYLRITDVTRDDLGNFQCIVN
+NG-----VGNVTTKEVMLIVKHKPEIDQHPalLKFASDAGDTGRVVCRSQAS--PLAKYKWarSGAPITANTTGkyYTTYRQiDALTSESVLFITHVTSS
+DYGNYECVARNELGFATASPRLEVTSAPDTP-----
+>gi|317419334|emb|CBN81371.1| MAM domain-containing glycosylphosphatidylinositol anchor protein 1 [Dicentrarchus labrax]
+------PSEIVASPNTNATLPCNVT------FPLSVTGDKIDKSLIKVSWISNGSDIASFSEaatQIKEGFSWDTSDFvNGDFSLTVLRAGLDLQGLYKC
+TVGYNFTMLQYRNVTLSILASPTLSIPQLWVVLETESHLK-------CHADGFYPPPVYFSWtRDGQVIQPPYDVEGEQSpDGYYMAVGNLTFYPSREDq
+NVTFGCKVSHNGSYQELDFQLN-------------
+>gi|301618640|ref|XP_002938728.1| PREDICTED: tapasin-like [Xenopus (Silurana) tropicalis]
+------SATLYARLGHPLAVPCGFWRGQQSRFAVEWRHRALGDGSVLYAYDGRLDRIEEIFQGCEMNFSTL--HSHGNASLLVDKVAVSDHGTFLCTIYL
+P--YIRAQRDMQLEVT----ALPVVTFLPDPLFARPGEEITLSCEVSRFHPLEISVDLlvrfpgDSQfSVLPGVSLSTHTLNkDGTFSLTASLSITASPE
+RhGARYFCKVRHVSAPEGITRS---------------
+>gi|297303273|ref|XP_001086428.2| PREDICTED: matrix-remodeling-associated protein 5 [Macaca mulatta]
+---------ITAMAGHTISLNCSAA----------------GSPTPSLVWVLPNG------TDLQSGQQLQRFYHKADGMLHISGLSSVDAGAYRCVARN
+A-----AGHTERLVSLKVGLKPEANKQYHNLVSIINGETLKLPCTPPGA-GQG-RFSW---TLPNSMRLEGPQA-LGRISLLdnGTLEVREASVfDRGTY
+VCRm-ET-------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+Q 1 4197 * 2731 2488 * 3196 * * * * * * 4116 1563 * 4138 4197 * * * 1
+ 0 * * * * * * 6919 0 0
+
+V 2 * * * 5263 3572 5117 * 4282 5376 1908 5169 4976 * 5023 * 3730 * 1619 * 5177 2
+ 0 * * * * * * 8451 0 0
+
+Q 3 5203 * 5408 5648 5386 4623 5329 5529 2736 3670 * * * 3198 4664 3604 3828 2062 * 4347 3
+ 0 * * * * * * 8853 0 0
+
+L 4 4892 * * * 4681 * * 3205 5839 1588 4962 * 5972 5907 5887 4335 3421 2034 * * 4
+ 50 4864 * 2613 258 * * 9200 1172 0
+
+Q 5 4970 * 5181 3557 * 6840 5922 5181 5286 3872 * 4268 * 2876 4878 3023 2215 2754 * * 5
+ 0 * * * * * * 9398 0 0
+
+Q 6 3180 * 5806 4636 * 4926 6292 5065 3213 4171 * 5144 4453 2347 4366 3592 3535 3259 * * 6
+ 93 3999 * 0 * * * 9486 1497 0
+
+P 7 5034 * 6103 4522 6383 6089 5141 * 5848 5367 * 4403 828 5902 5939 3438 3666 * * * 7
+ 82 4176 * 0 * * * 9782 1481 0
+
+G 8 2981 * 4280 3313 * 3455 * 6347 3730 4668 * 5258 2836 4832 5366 2820 3373 5294 * 6167 8
+ 51 4842 * 425 1969 * * 9816 1245 0
+
+A 9 3699 * 3606 3656 5236 6324 6393 6220 4330 3932 * 3657 5377 3367 5493 2255 3517 3996 * * 9
+ 33 6646 6321 0 * * * 9797 1000 0
+
+E 10 5437 * * 3671 * 6326 6742 2791 4953 2164 4897 * 5371 4374 6308 4688 4198 1969 * 6763 10
+ 0 * * * * * 0 9968 0 1001
+
+L 11 5031 6140 3991 3413 5439 * * 4242 4415 4840 5557 6148 5631 6762 3794 2576 2727 2741 * 4810 11
+ 47 4951 * 0 * 0 * 10029 1306 1001
+
+V 12 2443 * * * 6622 3455 * 3833 5011 3709 4484 * 6472 5567 5335 4493 5731 1514 * 5508 12
+ 0 * * * * * * 10124 0 0
+
+K 13 4346 * 6913 4184 5114 6194 6523 6658 3088 3746 4112 5829 5715 2887 3376 3184 3854 3492 5042 7025 13
+ 0 * * * * * * 10111 0 0
+
+P 14 3923 * 5489 1932 * 6743 * 5145 4201 3134 6810 * 3092 5341 3790 4488 4085 3531 * 5022 14
+ 0 * * * * * * 10227 0 0
+
+G 15 * * 5915 5536 6859 365 * * 4381 * * 4422 * 4655 * 4895 * 6820 * * 15
+ 0 * * * * * * 10144 0 0
+
+A 16 4610 6743 3057 2421 * 3030 5806 * 3352 5694 * 4549 * 2916 5281 3127 4042 6779 * * 16
+ 0 * * * * * * 10119 0 0
+
+S 17 4818 5709 3361 4542 * * 5671 * 4799 5707 * 3777 3036 4059 5158 2323 2245 4765 * * 17
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+I 214 4327 * * * 3317 * * 2327 * 1751 4792 * 5958 4768 * 4557 5081 2595 6477 5983 214
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+E 215 * * 3809 2355 * * 5672 4896 4311 4517 * 2686 5825 3460 2782 3075 4668 5744 * * 215
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+P 226 2708 2499 2801 * * * * * * * * * 1391 * * * 2783 * * * 226
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+K 228 * * * * * * * * 791 * 1244 * * * * * * * * * 228
+ 0 * * 0 * * * 1589 0 0
+
+//
+�HHsearch 1.5
+NAME a7d85b5797fc7c87d5f26fc1eaa87af7
+FAM
+FILE a7d85b5797fc7c87d5f26fc1eaa87af7
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:10:44 2013
+LENG 151 match states, 151 columns in multiple alignment
+FILT 104 out of 109 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
+HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9976431478716743512248999999999999873266755313688789646775404799999999998725444354452333066479999999
+985871588845629999999999998760789999889999999999709
+>Consensus
+xxxxxxxxxxxCxlxxxxxqxxxixxxxxxixxxxqxxDxxxxvrLLxxxllxxxkxxxxCxxxxxlLxFYLexVxxpxaxxxxpxixxxvssLaxlxxx
+LxxCxxxxxcexxxxxvxxikxxfxkLxxxgxxKAiGELDiLlxwiexxcx
+>a7d85b5797fc7c87d5f26fc1eaa87af7
+QGGAAAPISSHCRLDKSNFQQPYITNRTFMLAKEASLADNNTDVRLIGEKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDRFQPYMQEVVPFLARLSNR
+LSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI
+>gi|78127838|gb|ABB22222.1| Ov2.5 [Ovine herpesvirus 2]
+--ERVLPLRGNCKLLL---QDTVIPNLLYSMrsifqdIKPYFQGKDSLNNLLLSGQLLEDLQSPIGCDALSEMIQFYLEEVM-PQAEIHHPKHKNSVMQL
+GEtlhtLISQLQECTALFPCKHKSLGAQKIKEEVSKLGQYGIIKAVAEFDIFINYMES---
+>gi|335295319|ref|XP_003357467.1| PREDICTED: interleukin-24-like [Sus scrofa]
+----------PCRVEGIVLQELW--EAFWDMKDVVQAQDNITNVRLLRKEVLQNVSEAESCYLIHSLLKFYLNTIFKNYREKAvKFRILRSFSTLANnfv
+vIMSKLQPSqenEMFPISENARRRFLLFQREFKQLDrEVALTKAFGEMDILLTWMETF--
+>gi|194354137|gb|ACF54622.1| interleukin 10 [Larimichthys crocea]
+------------------------------------------------------FKTPFACHAINSILDFYLATVL-PGAlagvTEDTKSMKPHMESIQq
+ifdQLKNDVTACRHYFHCKNQFD-ITNLNSTYTQMQSKGLFKAVGELE-----------
+>gi|293341320|ref|XP_001058779.2| PREDICTED: rCG46376-like [Rattus norvegicus]gi|293352718|ref|XP_001060482.2| PREDICTED: interleukin 19 [Rattus norvegicus]gi|149058680|gb|EDM09837.1| rCG46376 [Rattus norvegicus]
+------------------------------IRRTLQTKDTFKNVTILStLENLRSIKPVDVCCVTNNLLTFYRDRVFKDHQE-TSLEVVRRISRIANsfl
+hMQKTLEQCvHRQCHCsQEATNATRTIHDNYNQLEvSSAALKSLGELNIFLAWIDR---
+>gi|7542405|gb|AAF63435.1|AF202534_1 interleukin-10-like protein [Cercopithecine herpesvirus 5]
+-------------------------------RETLQTKDTVYYVSLFHEQLLQEMLSPVGCRVTNELMQHYLDGVL-PRAfhcgyDNTtLNALHFLSSSL
+STLYQHMLKCP-ALACTGQTPAWTQFLDTEHKLDpWKGTVKATAEMDLLLNYLETF--
+>gi|282174062|ref|YP_003358164.1| ORF25 [Anguillid herpesvirus 1]gi|281308905|gb|ADA57788.1| ORF25 [Anguillid herpesvirus 1]
+----------------------------------------------------EHLHGPESCSVIDELITHHTKCVI-PAANEEeGADL-LSLDTLQvale
+NVKGLLANCQEEFGCKPPFS-MRDYKKQYRQLNkekNAGMIKAMGELGMLFNGIEE---
+>gi|212549595|ref|NP_001131083.1| interleukin 22 [Xenopus (Silurana) tropicalis]gi|156148266|gb|ABU54058.1| interleukin-26 [Xenopus (Silurana) tropicalis]
+--------------------------------KELFPKDNITDIQFLTEELKQDFMAQKNCNLRNNFLSFYIKTFLekPPVQEKA-KKL-KIIQDLMVIQ
+DMLLHCKKS-HCDHKETGIKsltELKIKIRQINgNKVLWKAISEMDTLLEWIYE---
+>gi|40555956|ref|NP_955041.1| CNPV018 IL-10-like protein [Canarypox virus]gi|40233781|gb|AAR83364.1| CNPV018 IL-10-like protein [Canarypox virus]
+------------------------------------GRDNDLSYMLLQ-GVRETHKKPCGCYVLYLLLSFYRKTIRDTIQSNKHASINAELTNLAvsvlS
+LEDLLDACGITCN-PKKDSLLKRIEEYMKEHGDDAIYKLIGEIEFLFQAIER---
+>gi|66472836|ref|NP_001018628.1| interleukin 22 [Danio rerio]gi|56044561|dbj|BAD72867.1| interleukin 22 [Danio rerio]gi|169154277|emb|CAQ13398.1| novel protein similar to interleukin 22 (il22) [Danio rerio]
+--------------------------------DTARNEDD-HETRLLPYFSHDMLQEEGSCCINARILKYYVNHVL-ESDEHtdmKYPMIRNVREGLHRV
+EQELQnHCKHDYS-SH--PLVKQFKRNYHAsaiMDlAAARNKAIGETNTLYHYLFESCT
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+Q 1 * * 2679 * * * 3917 * * * * * 3080 934 * 2880 * * * * 1
+ 0 * * * * * * 2501 0 0
+
+G 2 * * * 3705 * 1367 * * 2036 * * * 2679 2880 * * * * * * 2
+ 0 * * * * * * 2501 0 0
+
+G 3 4003 * * 1870 * 919 * * * * * * * 2887 * * * * * * 3
+ 0 * * * * * * 2918 0 0
+
+A 4 1637 * * 2887 * * * * * * * 4003 * * 2568 * 2301 3191 * * 4
+ 0 * * * * * * 2918 0 0
+
+A 5 1387 * 3252 * * 3352 * * * * * 2887 * * * * * 1839 * * 5
+ 0 * * * * * * 2918 0 0
+
+A 6 2871 * * * * * 3144 * * 2060 * * * * * * * 970 * * 6
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+
+P 7 * * * * * * * * * * * * 563 * 3443 * 2783 3543 * * 7
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+
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+ 0 * * * * * * 3301 0 0
+
+S 9 * * * * * 3508 * * * * * 2112 * * 2086 1536 3316 * * * 9
+ 129 3543 * 1000 1000 * * 3301 1058 0
+
+S 10 * * 3422 * * 2891 2399 * 3234 2799 * * * 3871 * 2221 4339 * * * 10
+ 0 * * * * * * 3304 0 0
+
+H 11 2623 * * * * * 2666 * * * * 2443 2683 3731 3316 2602 * * * * 11
+ 113 3731 * 1000 1000 * * 4035 1152 0
+
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+
+R 13 * * * * * 3657 * * 2715 * 5134 * * * 1140 * 3887 2194 * * 13
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+
+D 15 5168 * 3167 2182 * * * * 4056 3480 * 4060 * * 2307 3280 2990 * * * 15
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+
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+ 162 * 3236 * * 0 * 3892 0 1276
+
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+ 354 * 2201 * * * 0 3818 0 1083
+
+N 18 * * 1892 * 3450 * * * * * * 1042 * * * * * 2704 * * 18
+ 0 * * * * * 0 3322 0 1478
+
+F 19 * * * * 785 * * * * 1455 * * * * * * * * * 4190 19
+ 52 * 4813 * * 285 2482 3322 0 1478
+
+Q 20 * * * 2740 * * * * * 2935 * * * 475 * * * * * * 20
+ 95 * 3971 * * 0 * 3948 0 1111
+
+Q 21 * * 3443 1862 * * * * 4142 3618 3908 * 4209 1795 * * 5263 4064 * * 21
+ 260 * 2600 * * * 0 4088 0 1041
+
+P 22 * * * * * * * * * 3412 * 3554 1434 4503 * 2746 1957 * * * 22
+ 0 * * * * 1732 517 4018 0 1276
+
+Y 23 * * * 2399 2965 4414 * * 4657 * * 3702 * * * * * 3452 3594 1536 23
+ 125 * 3594 * * 0 * 4153 0 1176
+
+I 24 * * * * * * * 437 * 2847 3033 * * * * * * * * * 24
+ 0 * * * * * 0 4347 0 1091
+
+T 25 * * * 3470 5341 * * 4534 2597 * * 4269 3580 4358 1872 * 3508 5323 3234 * 25
+ 0 * * * * 0 * 4347 0 1091
+
+N 26 4544 * 5042 2679 * * * * 3051 * * 933 * 3594 * 4528 * * * * 26
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+//
+�HHsearch 1.5
+NAME a9670fd5e42b822d83bb9b8a9eda5dc0
+FAM
+FILE a9670fd5e42b822d83bb9b8a9eda5dc0
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:21:05 2013
+LENG 143 match states, 143 columns in multiple alignment
+FILT 106 out of 692 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCHHHHH
+HHHHCCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9886657632101325676743467759898899999996899769999799999999950221137996599999998603779889799977999999
+9998599942218144523677877517864788640142339
+>Consensus
+pxxxxxgxknxxxxxxxxxxxxxexxxpxexexxgxVxxxlGnxxfxVxxxdGxxxlaxIpGKmRKrIwIxxGDxVlVexxxxdxxKgxIvxRyxxxqvk
+xLxkxgxxpxxfxxxexxxxxxxxxxxxxxxxxxxxxxxxxxx
+>a9670fd5e42b822d83bb9b8a9eda5dc0
+PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEAR
+SLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI
+>gi|170291061|ref|YP_001737877.1| S1 IF1 family protein [Candidatus Korarchaeum cryptofilum OPF8]gi|170175141|gb|ACB08194.1| S1 IF1 family protein [Candidatus Korarchaeum cryptofilum OPF8]
+-----KRKEDREEVERSLDAEMEELLPADELEIFGRVLEPLGKGHFRVECIDNLIRICRVRGKLRgRRAWIKRGDIVLISLWPFQRTKGDIVVRYDRQQV
+EWLIEKGYIPR-dWATleeg-----------------------------
+>gi|20138737|sp|Q9HP87.2|IF1A2_HALSA RecName: Full=Translation initiation factor 1A 2; Short=aIF-1A 2
+---------------MSDESGRRNLRMPNDDEVFAVVKRHDGGNHVTLQCEDGKERMGRIPGRMKYRTWINEGDVVLAEPWDWQDEKANVEWRYSDQDAD
+QLREEGHIE----------------------------------
+>gi|198427951|ref|XP_002130036.1| PREDICTED: similar to eukaryotic translation initiation factor 1A domain containing [Ciona intestinalis]
+----ATKRKHVIKEVLEN------FSMPAPDQTIVKVLGNSGSNLHEVITPSGERFLASLPVKFRKNIWIKRGDYVITEP---iIeGDrvKGEIVRILYA
+QHIKEIKICKMWPKEFE------------------------------
+>gi|115450283|ref|NP_001048742.1| Os03g0114200 [Oryza sativa Japonica Group]gi|27476090|gb|AAO17021.1| Hypothetical protein [Oryza sativa Japonica Group]gi|108705834|gb|ABF93629.1| LOC496359 protein, putative, expressed [Oryza sativa Japonica Group]gi|113547213|dbj|BAF10656.1| Os03g0114200 [Oryza sativa Japonica Group]gi|125542126|gb|EAY88265.1| hypothetical protein OsI_09718 [Oryza sativa Indica Group]gi|215765975|dbj|BAG98203.1| unnamed protein product [Oryza sativa Japonica Group]gi|222624072|gb|EEE58204.1| hypothetical protein OsJ_09157 [Oryza sativa Japonica Group]
+----KAGRKNLRRACSEG------AVTLGEGESIMQVLALRGSNVIEVMDAKGVKSLALFPAKFQKSFWIKNGNFVVVDAsgRDQalEsGSkiACVVSQV
+LFHDQVRAMEKSEEWPAIFKS-----------------------------
+>gi|303285654|ref|XP_003062117.1| predicted protein [Micromonas pusilla CCMP1545]gi|226456528|gb|EEH53829.1| predicted protein [Micromonas pusilla CCMP1545]
+----------------------ELCPELNDGDAVCRVVELRGGNQVQVEKPDASTTLIRIPSKFSKVLWVRKGSHVLAHFEEDATSdaanggargskvTG
+ELLRVLYAEQIKELRRARpeAWPERFG------------------------------
+>gi|332250254|ref|XP_003274267.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Nomascus leucogenys]
+---------------------LGEHIVPSDQQQIVRVKRQP--SLGDRTTSYGFGF------PYCKQaclpfLFLPTGDFLIVDPIEEGeKVKAEISFVL
+CKDHVRSLQKEGFWPEGFS------------------------------
+>gi|322511287|gb|ADX06597.1| putative eukaryotic translation initiation factor eIF-1A [Organic Lake phycodnavirus]gi|322511357|gb|ADX06665.1| putative eukaryotic translation initiation factor eIF-1A [Organic Lake phycodnavirus]
+--------------------TTNKLRLSnDEDELYAVVTKMLGNSQCHVVTLHGQTLLCIIRkkftGKHKHQHFLKSGSWVLVGLRNWEtiqsDkmAKCD
+LLECYSENDKQTICKQSDLNVETLIQE---------------------------
+>gi|310831445|ref|YP_003970088.1| hypothetical protein crov455 [Cafeteria roenbergensis virus BV-PW1]gi|309386629|gb|ADO67489.1| hypothetical protein crov455 [Cafeteria roenbergensis virus BV-PW1]
+PGQKQKGKKNVRRTKT-----RFELIEPSKGQLIAEVEDTHGGYPPRFSCktVDGDIIIAPIQGSIMkgpKRVLVKKDNLVLLVPIDFTTGKEgttsyYI
+HHVYTSEDRHQLEKKGFLEKKDKISDA--------------------------
+>gi|330819201|ref|YP_004348063.1| Translation initiation factor IF-1 [Burkholderia gladioli BSR3]gi|327371196|gb|AEA62551.1| Translation initiation factor IF-1 [Burkholderia gladioli BSR3]
+------------------------------LELDGVVDEVLPDSRYRVTLENGAVVGAYASGRLKKnHIRILAGDRVRLEMSMYDLTKGRINYRHKDERA
+--------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+
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+ 0 * * * * * * 1000 0 0
+
+I 140 * * * * * * * 0 * * * * * * * * * * * * 140
+ 0 * * * * * * 1000 0 0
+
+D 141 * * 0 * * * * * * * * * * * * * * * * * 141
+ 0 * * * * * * 1000 0 0
+
+D 142 * * 0 * * * * * * * * * * * * * * * * * 142
+ 0 * * * * * * 1000 0 0
+
+I 143 * * * * * * * 0 * * * * * * * * * * * * 143
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME aa7797cb86715b5f00dd396459cdd380
+FAM
+FILE aa7797cb86715b5f00dd396459cdd380
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:26:11 2013
+LENG 191 match states, 191 columns in multiple alignment
+FILT 154 out of 304 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCEEEECCCEEEEEEEEEEE
+EECCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCEEEECCCCEEEEEECCCCCEECCCCCEEEEEEEEC
+>ss_conf PSIPRED confidence values
+9467777765552033146898755467898379998068756654476554333378735786547887522158589899999753709999999999
+6325886555687028999997789886236762567775079887351677660238925999999997895507118997199999929
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxkpaaHLxgxxxxxxxxxxxxxxxxxxxxxxxlxWxxxxxgxaxxxgxxxxxgxLxVxxxGlYyVYSQVxF
+xxxxxxxxxxxxxxxlxhxvxxxxxxxxxxxLlxxxxtxcxsxxxxxxxxsxyxGgvfxLxxGDxLxVxvsxxxxvxxxxxxTfFGxfxlx
+>aa7797cb86715b5f00dd396459cdd380
+MILRTSEETISTVQEKQQNISPLVRERGPQRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYF
+RFQEEIKENTKNDKQMVQYIYKYTSYPAPILLMKSARNSCWSKDAEYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAFLVG
+>gi|47225327|emb|CAG09827.1| unnamed protein product [Tetraodon nigroviridis]
+-------------------------ENPTCKKFCHLEICNLKECKTKPPKS--FNVSAANYLQWDIQ---HSFLRDIGYyHNVWLTVQQSGDYYVYSRVT
+FSKGD-------PRVPLASMIKMrKNeTDKEEKTVMQAYCSLTdQSGTQIPQLCTATQGEVVTLESGNQLSVWVQDLSLVDYEEGATTFGMYKL-
+>gi|310788577|gb|ADP24261.1| tumor necrosis factor alpha [Haliotis diversicolor]
+---------------------------NLLKPVAYLTGLDFDGRIE---SE-----NDTFVRNWVPFVahGGRQLMsNGMRYDHGSIIVPTPGVYAVESH
+VKFYTENNR--RRETEIDFHHSIMRYNAiKQTSQPALADIMSENKNdvIEGGCLEYSSNIHGLLELNAGDQLIVKVSHLKPLQHDRDWHYFGLYMV-
+>gi|197210937|gb|ACH48393.1| Eda [Maylandia zebra]
+-----------------------------QPAVVHLQGQETT---IQVR-EDLS---QGILKNWKMVS-IHHRVFKMHSRTGQLEVLLDGVYFIYSQVev
+YYLNFTD----------IASY--D--VMVDSSPFLRCTCSIET---GQRKFNTCYTAGVSPLRAGQKIYIRIAHEYtLINMTNHTTFLGSVRLG
+>gi|115719327|ref|XP_001204312.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]gi|115801769|ref|XP_799917.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
+-------------------------MRQEGEPSAHVVPLISPNAQQNNNFY--P---TSAWFVWTDQV--NRISHaTIPLSNtgKFLLAPHSGYYFIYSQ
+VTLES--CNND--SDTDGRGHSLYVKTTcgRDTEQELTYTVTTPY-NRNLGCTYDTGYIGGVYYLEQHDHVGVKPYvppgsMRSRIFLKLSNSYFGMILI
+S
+>gi|198413177|ref|XP_002126703.1| PREDICTED: similar to tumor necrosis factor [Ciona intestinalis]
+------------------------------------------------------------VVVWEHAN-GAGTTsrKGFDVSGGNITVNSEGVYYMYLHT
+TFRTN---GNPRTRSRRISHKvLVNNS----PIELLGEKRDLGEDDT----IQTLDSLMTYVLEKENRLTIELEKPDYMSVstNPSETYFGIFKL-
+>gi|68534978|ref|NP_001020390.1| tumor necrosis factor receptor superfamily member 8 [Sus scrofa]gi|61338439|gb|AAX43996.1| tumor necrosis factor ligand superfamily member 8 [Sus scrofa]
+------------------------------------------------------------KLSWNKDG----IIHGVRYHDGNLVIQFPGWYFIICQLQF
+LVKCPEH-SV--DLKLELLINENVKK-------QTLVTVCESGVQTkSIYQNLSQFLLEHLQVNTTISVNVDKFQYVNTNTfpLENVLSIFL--
+>gi|83921653|ref|NP_001033075.1| tumor necrosis factor beta [Takifugu rubripes]gi|66391027|dbj|BAD98729.1| tumor necrosis factor beta [Takifugu rubripes]
+------------------------------------------------------------NRSWQEFH-S----g-gscSFVHHEGSIHCRKNSLYFLYA
+QVAFTKHASQT--RSKS----VILVRNPaDdKS-l-RKLAEGTF----PPTTE---GSVWVANVVRLKEDDTISINITGEVlS-----DITLWGAFEL-
+>gi|115496536|ref|NP_001070075.1| tumor necrosis factor ligand superfamily member 12 [Danio rerio]gi|115313437|gb|AAI24496.1| Zgc:153941 [Danio rerio]gi|158253868|gb|AAI54256.1| Zgc:153941 [Danio rerio]gi|305678684|gb|ADM64322.1| tumor necrosis factor superfamily member 12 [Danio rerio]
+---------------------------NGRKVASHFEITSDS--F--QKVGN-----EGVIKGWTEEQ--LNMSRAVNYnsETGTFRVERSGVYFVYCQV
+HFNEN------------QSQYVKLEVSIPKGPLLqcIEGYGTTPASGSHRFHFlKPCQVSGLLRLNKGTELK-AVTGASFSLQTSGKHYFGLFKVN
+>gi|157822647|ref|NP_001100348.1| CD70 antigen [Rattus norvegicus]gi|149028135|gb|EDL83573.1| similar to Tumor necrosis factor ligand superfamily member 7 (CD27 ligand) (CD27-L) (CD70 antigen) [Rattus norvegicus]
+-----------------------------------------------------------LTLRWGAGPaLGRSFTHGPGLEKGNLRIHQDGIYRLHIQVT
+LAN--CSSSGSAlqHRASLVVGICS--PAVHIISLLRRrFGQDCTVSLQ----------RLTPLARGDVLCSNLTQPLLPSRNADETFFGVQ---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 3538 * * 2544 * * * 2639 * * 3107 * * * * 2947 * 1573 * * 1
+ 0 * * * * * * 3196 0 0
+
+I 2 * * * * * * * 3079 * 2458 2301 * * * * * 1573 2639 * * 2
+ 0 * * * * * * 3196 0 0
+
+L 3 2681 * 3746 2641 3777 * * * * 1687 * * * 3197 * 3098 * * * * 3
+ 167 3197 * 4248 78 * * 3196 1013 0
+
+R 4 * * 3408 * * * * * 2018 * * 2452 * 3615 2025 2747 * * * * 4
+ 0 * * * * * 0 2969 0 1013
+
+T 5 * * * * * * 2764 1902 * * * 3293 * * 2059 3897 2506 * * * 5
+ 0 * * * * * 0 2969 0 1013
+
+S 6 * * * * 2018 * * 2697 * 2381 * * * * 3810 4167 * * * 1837 6
+ 0 * * * * * 0 3187 0 1013
+
+E 7 * * * 1558 * * * * 3468 3810 * * * 1538 * 2697 * * * * 7
+ 0 * * * * * 0 3187 0 1013
+
+E 8 * * 3161 2414 3468 * * * 1129 * * * * * 2708 * * * * * 8
+ 0 * * * * * 0 3187 0 1013
+
+T 9 * * 3810 1270 * * 3655 * * * * 4042 * 3740 * 4014 2075 * * * 9
+ 0 * * * * * 0 3187 0 1013
+
+I 10 2714 * * * * * * 1217 * * * 3468 * * * 4014 2697 3173 * * 10
+ 1360 712 * 787 1251 * 0 3187 1773 1013
+
+S 11 * * 3173 3655 * 3468 3740 * 3623 * * 3565 * * * 1062 * * * * 11
+ 119 * 3655 * * * 0 3187 0 1013
+
+T 12 1411 * * 2267 * * * * * * 3410 * * * 3916 * 2597 3464 * * 12
+ 0 * * * * * 0 3104 0 1118
+
+V 13 2385 * * * * * * 3948 * 1858 3464 * * * * * 3738 1726 * * 13
+ 151 3334 * 1000 1000 755 1295 3104 1048 1118
+
+Q 14 * * * 2824 * 3810 * * 4133 * * 4042 3314 4167 1241 3468 * * * * 14
+ 0 * * * * * 0 3187 0 1013
+
+E 15 * * 2175 1496 * 4140 * * * * * * * 4242 2904 3796 4051 4369 * * 15
+ 0 * * * * * 0 3432 0 1013
+
+K 16 * * * 2693 * * 4051 * 1242 * * * * 4399 * 3060 2958 3912 * * 16
+ 78 4245 * 1000 1000 * 0 3432 1036 1013
+
+Q 17 * * * * * * * 3896 4369 2413 4071 * 3003 2090 4399 2446 * 4421 * * 17
+ 0 * * * * * 0 3432 0 1013
+
+Q 18 * * * 4245 3912 * * 1768 * 2689 * * * 2744 * 3235 3104 * * 4051 18
+ 99 * 3912 * * * 0 3432 0 1013
+
+N 19 * * * * * 1701 4192 * * 4276 * 1991 3740 * 3149 3511 * 4077 * * 19
+ 0 * * * * 755 1295 3356 0 1118
+
+I 20 * * * * * * 4220 1814 * 2424 * * 3912 4203 * 4140 2382 3235 * * 20
+ 0 * * 2895 208 * 0 3432 1073 1013
+
+S 21 * * * 4526 * * * * * 2044 * 3095 2172 4538 * 3323 2599 * * 3896 21
+ 0 * * * * * 0 3703 0 1013
+
+P 22 4279 * 4059 4086 * 4223 4538 * 4207 * * 4517 1107 * 4050 4526 * * 3896 * 22
+ 0 * * * * * 0 3703 0 1013
+
+L 23 2599 * * * * * 3347 * 4526 2650 * 3075 2777 * * 2743 4050 4068 * * 23
+ 396 3896 2533 1000 1000 * 0 3703 1095 1013
+
+V 24 3242 3650 * 2836 * * * * * 2379 * 3823 1961 * * 4321 4227 4285 * * 24
+ 598 1559 * 1832 476 0 * 3297 1344 1317
+
+R 25 * * * 3249 * 4770 * 3936 2507 * * * * 2840 1664 4162 3690 5136 * * 25
+ 129 4124 5136 1526 615 * 0 4443 1142 1073
+
+E 26 3354 * 3748 2428 5369 2291 * 4801 4894 5140 4271 3585 5251 4077 * 3825 5362 * * * 26
+ 275 2525 * 1048 953 1563 596 5152 1611 1140
+
+R 27 3503 * 5560 4624 4504 4702 4298 5897 2931 4989 5666 5100 6170 5623 2253 2511 3856 * * * 27
+ 22 6024 * 0 * * 0 6109 1000 1073
+
+G 28 * * 5592 3203 * 3529 * 5469 4095 * 5564 2442 3177 3511 5668 2444 5140 4612 5218 * 28
+ 0 * * * * * 0 6457 0 1073
+
+P 29 4514 5501 5125 3465 * 4158 5547 4396 4913 3719 6585 2885 3253 * 4422 3270 2794 6686 * 5270 29
+ 48 4945 * 647 1468 0 * 6664 1400 1073
+
+Q 30 2704 5658 4310 5050 6073 3829 4932 5366 5981 3499 5252 4427 3309 3179 3586 3517 5352 7009 * 6296 30
+ 0 * * * * * * 6823 0 0
+
+R 31 * * * 4934 6204 6125 6915 5940 1161 4969 * 4649 3305 4478 2637 4729 6191 5170 6680 * 31
+ 37 5321 * 4144 84 * * 6844 1083 0
+
+V 32 2968 * * * 5162 6552 * 3099 4673 5530 * * 1140 * 7032 3706 * 3328 * 5772 32
+ 0 * * * * * * 6844 0 0
+
+A 33 969 * * * 4027 4376 5932 * * 6268 5616 * * * 5767 3075 5717 2524 * * 33
+ 0 * * * * * * 6844 0 0
+
+A 34 627 4726 * * * * * 2707 * 6071 * * * * * 5967 5341 3235 * * 34
+ 0 * * * * * * 6844 0 0
+
+H 35 5932 * * * * * 91 * * * * * * 6006 * * * * * 5107 35
+ 0 * * * * * * 6844 0 0
+
+I 36 6695 * * * 3853 * * 4058 * 655 5932 * * * * * * 2253 * * 36
+ 0 * * * * * * 6844 0 0
+
+T 37 4969 * * 2946 * * 6623 2501 * * * * 6194 4165 * 4056 1390 2831 * * 37
+ 119 3654 * 1386 696 * * 6844 1569 0
+
+G 38 3248 * 4598 * 6798 587 * 3991 * 4977 * * 5070 5919 * 5703 5744 * * * 38
+ 79 4543 6604 610 1537 * 0 6851 1207 1108
+
+T 39 3183 4891 3442 4406 6299 5881 5883 3854 3569 4010 * 3148 6696 4322 4078 2830 4862 5713 * 5097 39
+ 292 4338 2900 0 * * 0 6842 1222 1159
+
+R 40 4110 7173 4460 4272 7016 4152 6899 4458 4293 5152 * 3144 2903 4829 4486 3506 3678 5906 5587 3176 40
+ 58 * 4677 * * 3424 141 6825 0 1913
+
+G 41 5659 * 4111 3747 4511 3319 5288 5505 4982 3808 5567 2671 6563 6576 4260 2109 3956 7486 * * 41
+ 71 6595 4738 0 * * 0 6783 1048 1968
+
+R 42 3844 * 4959 3407 * 6174 6301 * 3365 4526 * 5854 2684 3222 3160 2400 5746 4758 * * 42
+ 470 3614 2349 631 1498 2792 225 6750 1293 2105
+
+S 43 4315 * 3894 3246 * 2947 * 5542 4030 5011 * 3459 6387 3105 3926 2943 3942 6857 * 4470 43
+ 648 5037 1594 943 1059 2268 336 6234 1063 2754
+
+N 44 4064 4731 4284 5090 5732 3357 5730 4955 4285 4389 5677 3236 4682 * 4990 3575 2912 3358 * 4480 44
+ 183 * 3072 * * 2757 231 5832 0 3275
+
+T 45 3829 * 4352 * 3078 3325 5947 3121 3946 2978 4577 * 5796 4109 * 3822 3303 * * 4330 45
+ 226 5395 3043 2240 343 2120 377 5828 1167 3172
+
+L 46 3492 * * 4556 5558 5256 * 3812 * 4628 4122 4317 2438 4371 * 2608 2524 5005 * * 46
+ 263 * 2585 * * 3139 174 6069 0 2932
+
+S 47 5379 * 4214 4079 5233 5358 4929 * 3846 2163 5138 3907 3441 3270 5827 2817 4796 * * * 47
+ 189 * 3027 * * 3116 177 5977 0 3157
+
+S 48 2926 * 5671 5685 * 6080 3890 2766 * 3605 4450 3178 3996 3773 4419 4066 4613 3672 * * 48
+ 47 * 4957 * * 3851 104 5963 0 3201
+
+P 49 5095 * 4642 2972 * 5596 5871 6167 2356 5918 * 3200 1553 5026 4554 * 5898 * * * 49
+ 276 5662 2695 1000 1000 1500 629 6082 1024 3134
+
+N 50 4672 6830 4526 4904 4206 6237 5555 5549 4221 6085 * 3291 5983 3993 3408 2034 4347 2961 * * 50
+ 318 3346 3330 1843 471 3811 107 6250 1421 2755
+
+S 51 * * * 3226 4749 2330 * 5515 * 4437 4679 5458 4389 4650 3388 2112 5741 5470 * 3807 51
+ 544 * 1670 * * 5052 44 6193 0 2923
+
+K 52 3121 * 2555 4689 4524 5366 4769 * 2733 * * 3432 2405 * * 3839 5358 * 4457 * 52
+ 475 * 1833 * * 5354 36 5609 0 3564
+
+N 53 * * 4665 3360 * 2468 * * * 1172 * 4553 3926 * 4685 * * * * 3453 53
+ 209 5248 3200 2322 322 3280 157 4960 1036 3930
+
+E 54 * * 5164 5703 3251 3598 3071 * 4022 * * 4566 3374 3192 2316 2880 * * * * 54
+ 261 * 2593 * * * 0 5270 0 3761
+
+K 55 * * * * * 2842 * * 2259 * * 2976 * 1327 2991 * * * * * 55
+ 77 * 4263 * * * 0 4743 0 3956
+
+A 56 4341 * * 4875 4654 5423 4250 * 5660 * * 5118 4637 * 4384 1947 4609 1779 * 3786 56
+ 86 * 4107 * * 2900 207 4605 0 3997
+
+L 57 * 2698 4695 * * 4261 4991 5814 5126 2586 4836 2540 3602 5519 4390 4334 5263 4086 * 5858 57
+ 183 * 3070 * * 1002 998 5363 0 3718
+
+G 58 5122 * 4299 4623 * 1469 5319 5581 3665 * 5479 5462 * 4810 3033 4341 3294 6338 * 5199 58
+ 194 * 2988 * * 2365 311 6522 0 2605
+
+R 59 3999 * 3991 4196 5468 2685 3191 * 4301 5879 * 3570 6056 3310 4138 4044 3603 5282 * 4672 59
+ 41 * 5154 * * 1610 573 6488 0 2661
+
+K 60 4615 6172 6830 5181 5811 3656 7077 5897 2139 6151 * 3422 2874 5321 4505 3238 3659 3999 * * 60
+ 270 5130 2816 1953 431 932 1071 6796 1069 2214
+
+I 61 4655 * * 6257 6419 6550 5348 2707 3805 2762 5514 5780 * 4109 5479 4191 3495 2223 6100 4815 61
+ 38 6518 6029 0 * 206 2913 7403 1000 2121
+
+N 62 * * 6772 6810 4265 5166 7522 4674 4821 1147 6293 4386 * 4983 3585 5797 4307 3226 6243 7267 62
+ 0 * * * * 494 1785 7512 0 1186
+
+S 63 4850 7359 4161 3190 5914 5067 3888 6103 5046 4450 6637 3433 4792 3279 3398 2846 4204 4744 7436 5947 63
+ 0 * * * * 0 * 7539 0 1012
+
+W 64 * * * * * * * * * 6060 * * * * * * * * 22 * 64
+ 0 * * * * * * 7549 0 0
+
+E 65 4133 * 3806 1946 5198 5415 6080 5762 3610 5733 5494 4017 * 4086 3627 5709 3853 3529 * 5125 65
+ 0 * * * * * * 7549 0 0
+
+S 66 4193 6882 3622 3220 * 4042 3953 5749 3616 6173 5963 3586 3296 4096 5165 3263 3732 4927 7152 8792 66
+ 47 6887 5403 1000 1000 * * 7549 1000 0
+
+S 67 4473 * 2517 4656 4298 3485 5609 6616 3367 7573 4693 3440 6091 3544 4595 3395 3846 5957 * 6124 67
+ 25 * 5859 * * 653 1457 7519 0 1085
+
+R 68 5195 * 3726 4806 6930 3298 3806 7030 4767 4004 7110 4533 4319 2965 3502 3507 3752 3901 7465 5522 68
+ 2448 3945 412 738 1320 * 0 7521 1393 1126
+
+S 69 2424 * 5699 * 3244 3518 * * 3477 3960 * * 3144 4678 4027 3177 * 4558 * 3627 69
+ 478 4511 2071 1000 1000 427 1965 5734 1016 5247
+
+G 70 5021 * 2595 3852 * 821 * 5616 * 5607 6187 5986 * * 6670 4809 4591 6505 * * 70
+ 172 6394 3311 1585 585 495 1784 7059 1006 2735
+
+H 71 4198 * 5161 4315 * 5254 3304 7464 4662 2675 7189 3437 4539 3060 3180 5943 5486 6375 4021 4225 71
+ 0 * * * * 830 1193 7309 0 2135
+
+S 72 1338 6189 4801 5110 6946 4053 6577 6544 6662 7080 * 6540 4408 5168 6639 1856 5884 5889 * 6226 72
+ 23 6801 7124 2000 415 667 1433 7431 1000 1484
+
+F 73 * * * 6392 1394 5739 3104 4604 6001 3053 5596 4328 4917 7148 5139 4276 3787 7194 6246 6338 73
+ 39 5717 6967 692 1393 1176 843 7559 1059 1188
+
+L 74 4831 4440 5905 6968 5934 5795 * 4014 6123 1702 3575 7009 6210 5667 * 4019 2498 3240 * 7196 74
+ 342 2243 * 293 2444 * 0 7579 2433 1150
+
+S 75 5649 5705 4470 4750 5760 4688 3114 * 3487 * 6824 3178 5783 2653 3212 2612 5661 6014 * 6215 75
+ 372 2137 * 632 1495 0 * 7593 2515 1150
+
+N 76 4599 * 3852 5139 7057 1248 4031 * 4429 5343 * 2765 6488 6247 5260 4175 5273 * * 5544 76
+ 148 3363 * 370 2145 * * 7679 1653 0
+
+L 77 6259 * * * 1980 * * 3108 6906 2567 2168 * 5891 * * * 6317 2534 * 5999 77
+ 12 6878 * 1585 585 * * 7652 1004 0
+
+H 78 4876 * 5258 3273 * 4351 4081 6296 2738 6550 6921 4335 5887 3801 2997 3246 2918 4454 * * 78
+ 0 * * * * * * 7681 0 0
+
+L 79 5042 6635 * 6892 3129 6945 5161 4848 * 1580 5668 7348 7065 * * 5377 6879 4083 * 1705 79
+ 185 3054 * 281 2497 * * 7681 1816 0
+
+R 80 7012 * 3073 3487 7038 6272 3306 5915 3204 5013 5591 4286 5833 4293 2971 2905 4133 4386 * * 80
+ 62 4860 6991 557 1642 * * 7693 1257 0
+
+N 81 4926 * 1843 3360 * 3321 5989 * 4663 * * 1738 * 6513 5694 4350 4657 6514 7365 * 81
+ 22 6071 * 704 1373 0 * 7688 1062 1006
+
+G 82 7465 * 5664 5357 * 861 4679 * 4589 * * 2580 * 5025 4417 6954 4705 6605 * 5835 82
+ 138 3580 7033 321 2327 * * 7693 1521 0
+
+E 83 5379 * 7091 2541 5516 3816 4601 7442 3065 5650 * 3879 * 3509 3566 2725 4830 4635 6591 4632 83
+ 9 7275 * 0 * 0 * 7681 1000 1000
+
+L 84 7061 * * * 5818 * * 1747 * 687 * * * * * * * 4171 * * 84
+ 0 * * * * * * 7693 0 0
+
+V 85 4931 * * 3494 * * 5009 2802 3906 3644 6521 * * 4358 3416 7111 2654 2134 * 6626 85
+ 11 7061 * 1000 1000 * * 7693 1024 0
+
+I 86 5575 5832 * * * * * 1369 * 5022 * * * * 7061 * 7419 915 * * 86
+ 0 * * * * * * 7693 0 0
+
+H 87 6593 * 6442 4138 7073 6244 3811 7041 4388 3817 * 3462 1502 3320 3913 6780 4740 5304 7020 6233 87
+ 0 * * * * * * 7693 0 0
+
+E 88 5333 7755 4993 2308 5795 6399 4742 * 3300 4794 7453 7591 * 2342 3019 3614 3716 4532 * * 88
+ 0 * * * * * * 7693 0 0
+
+K 89 3552 * 2838 3325 * 4781 * * 4912 * 7338 5032 2611 5956 * 2317 2409 * * * 89
+ 0 * * * * * * 7693 0 0
+
+G 90 7031 * * * * 29 * * * * * * * * * 6363 * * * * 90
+ 0 * * * * * * 7693 0 0
+
+F 91 * * 4830 * 3240 * * 3306 5670 1450 * * * 5709 5090 * 3818 3027 5795 3157 91
+ 0 * * * * * * 7693 0 0
+
+Y 92 * * * * 5517 * * * * * * * * * * * * * * 32 92
+ 0 * * * * * * 7693 0 0
+
+Y 93 5847 * * * 1409 * 5765 6953 6289 3144 * 5910 * * 5938 6188 6644 * 6031 1390 93
+ 0 * * * * * * 7693 0 0
+
+I 94 * * * * 6626 * * 1543 * 2904 6634 * * * * * * 991 * * 94
+ 0 * * * * * * 7693 0 0
+
+Y 95 * * * 6723 4537 * 5938 5293 * * * * * * * 6289 * * * 164 95
+ 0 * * * * * * 7693 0 0
+
+S 96 2418 3535 * * * 5166 * 4896 * 4515 6399 6991 7061 * * 866 4818 6626 * * 96
+ 0 * * * * * * 7693 0 0
+
+Q 97 * * * * 5778 * 3149 * 3715 * * 5205 * 447 5295 7191 * * * * 97
+ 6 * 7964 * * * * 7693 0 0
+
+T 98 3757 * * * * * * 2663 * 2606 5341 * * * * 6668 3509 1054 * * 98
+ 33 5453 * 1000 1000 * 0 7698 1166 1000
+
+Y 99 5129 4083 6447 6036 6462 4383 4518 6893 5139 3530 6974 5047 * 4250 * 2932 2267 4444 * 2442 99
+ 0 * * * * * 0 7698 0 1000
+
+F 100 * * * * 680 * * 6754 * 3360 * * 6893 * * * 6864 5815 * 2094 100
+ 32 6634 6407 0 * * 0 7698 1037 1000
+
+R 101 4571 4563 6035 5088 5682 * 4311 5279 3853 3813 6474 4458 * 5277 1629 3662 4412 5873 * 3539 101
+ 58 6628 5098 0 * * 0 7706 1037 1065
+
+F 102 4887 6507 2667 4372 5034 2676 4504 5686 5060 5930 7413 3715 6714 6256 4287 3853 4316 3453 * 3539 102
+ 82 6171 4597 0 * 767 1278 7644 1046 1407
+
+Q 103 * * 4356 3683 5984 5119 3728 6535 3697 4356 7386 3304 3817 3959 3622 2955 3240 4506 * 6167 103
+ 217 * 2837 * * * 0 7634 0 1434
+
+E 104 3814 2891 4165 3396 7546 4114 3220 7079 4210 5835 6144 5111 5396 5957 4309 3140 3280 5072 * 6115 104
+ 116 5301 4271 4091 87 2576 265 7449 1109 2384
+
+E 105 5468 2428 2983 6023 * 4142 5979 5730 4278 4501 * 3967 3376 5346 * 3182 3804 5314 6601 4042 105
+ 171 * 3164 * * 2517 277 7481 0 2532
+
+I 106 4568 6606 3977 3691 * 3136 4550 5424 4115 5628 * 3902 3499 4839 4216 2160 4339 6039 * 5921 106
+ 320 5696 2475 436 1938 5034 45 7401 1043 2941
+
+K 107 4227 5917 4310 3141 6155 2317 5309 4666 4662 6492 * 2643 3359 * 5791 3424 4586 5266 * * 107
+ 658 2950 2079 2504 280 3711 115 7191 2171 3744
+
+E 108 3798 4593 2509 3169 * 2092 5700 * 4633 * 4748 3743 6247 * 5596 2966 6699 6223 * 6797 108
+ 360 3473 2938 1479 641 1991 418 6741 1350 4356
+
+N 109 3529 6057 3216 2376 5489 5352 4947 6544 3873 4201 * 5081 3650 7403 2930 4173 5902 6376 6094 4628 109
+ 42 7199 5525 0 * 2354 314 6915 1000 3981
+
+T 110 4189 * 4904 2854 * 4890 5205 3261 3616 4620 4065 * 4421 4373 2811 3785 3973 4248 * * 110
+ 366 3161 3157 1738 514 3196 167 7111 1442 3533
+
+K 111 3628 6851 4198 4997 * 2366 5553 5194 4283 6399 * 4207 4489 4995 3694 2584 3603 4506 5763 * 111
+ 328 2509 5164 939 1064 1180 840 7006 2018 3674
+
+N 112 4281 * 2836 3759 5796 4782 5277 * 3153 6148 5248 2699 4418 5294 3602 3175 4010 5631 * * 112
+ 13 6849 * 1567 594 1042 960 7245 1253 2694
+
+D 113 4768 * 4112 3782 5849 2427 5332 5120 5189 5324 * 3145 3296 5667 4806 3206 3216 4991 * 7422 113
+ 173 4966 3631 1494 632 2582 264 7504 1159 1889
+
+K 114 3395 5336 3602 4325 4723 7169 4352 4261 3420 2770 * 5334 4341 4188 3775 5905 3750 3859 * * 114
+ 189 3277 5657 1398 688 1187 834 7415 1630 2215
+
+Q 115 4521 * 5738 4645 5908 5253 3374 4286 4691 4043 6228 * 2479 2898 4640 3718 3409 4775 * 4877 115
+ 21 * 6128 0 * 479 1823 7479 1000 1883
+
+M 116 6469 * * * 2719 * * 3291 6594 1313 3159 * 6578 6739 5380 6637 5090 3412 * 4937 116
+ 7 7604 * 1000 1000 2868 213 7591 1000 1356
+
+V 117 3986 * 6899 5616 * 3383 5341 3993 6126 3313 4818 6962 6107 5047 6358 2028 2900 2940 * * 117
+ 20 * 6194 * * 1143 870 7569 0 1300
+
+Q 118 5273 * * * 6489 * 1307 7028 * 3747 5434 4825 7864 2210 6358 3656 7000 3462 * 6988 118
+ 6 7864 * 1585 585 2425 297 7615 1000 1240
+
+Y 119 4674 3624 5543 4786 7281 4336 7016 5125 4316 5172 5480 5482 * 5057 3503 3558 3324 3493 6941 2272 119
+ 77 4788 5998 0 * 779 1261 7623 1199 1185
+
+I 120 * * * * 6423 * * 1699 7196 2333 5113 * * * * * 3541 1473 * * 120
+ 41 6150 6151 1556 599 * 0 7605 1070 1185
+
+Y 121 7792 4521 * 6881 4092 7077 5100 4946 4042 4445 4417 3755 * 4924 4922 3710 3655 3477 4123 2188 121
+ 49 * 4902 * * 887 1122 7595 0 1285
+
+K 122 * * 5218 5824 * 6976 4228 5806 1786 3451 5114 5573 * 6987 1912 4208 5008 4237 6637 5431 122
+ 524 2258 3385 637 1487 1757 506 7599 2560 1355
+
+Y 123 4517 * 4613 5199 5379 6703 4885 6495 2969 4925 5969 3385 5555 7554 2811 3362 4628 3759 5735 2858 123
+ 64 4870 6786 0 * 1966 427 7471 1177 1976
+
+T 124 4063 * 4476 5280 * 3383 5244 4743 6341 5418 * 3206 5259 5615 4529 2279 2286 3945 * * 124
+ 536 1780 5716 492 1791 1683 539 7445 2769 1775
+
+S 125 3893 * 3291 * 7507 4888 * * 3443 5124 * 3840 2849 4322 5604 1692 5140 4844 * 5744 125
+ 482 1898 6015 229 2768 1913 445 7570 2957 1644
+
+Y 126 5194 6268 4636 5233 3857 5834 6912 4704 3524 4076 4955 4091 5868 4717 4344 3969 6530 4971 * 1682 126
+ 159 3892 4751 568 1621 3424 141 7549 1447 1560
+
+P 127 4336 * 4096 3795 7024 2345 * * 5432 5056 5575 5102 2170 4287 3946 3964 4502 3929 * * 127
+ 43 * 5095 * * * 0 7476 0 1776
+
+A 128 4117 6644 3712 2726 5245 4446 5207 5624 3524 6470 * 4850 4895 3369 4345 3195 3017 4854 * 7506 128
+ 57 6269 5285 1440 663 3113 177 7421 1128 1970
+
+P 129 6007 5961 3468 2192 * 6435 4832 5446 3141 * * 4762 2109 5346 5760 3571 5633 5339 7265 5108 129
+ 21 * 6097 * * 2473 287 7449 0 2064
+
+I 130 3906 * 5698 3402 * * 6370 2288 3703 3797 5307 6890 6441 3758 3846 5056 3536 2932 * 5805 130
+ 75 6413 4675 1585 585 2554 269 7463 1014 1955
+
+L 131 6287 * 4987 3224 5484 * * 3765 5292 2413 6946 4800 3163 5027 4866 3384 2827 3607 * * 131
+ 22 7150 6917 2322 322 2766 229 7417 1000 2028
+
+L 132 5755 * * * 4783 * * 3722 6762 321 7048 * 7112 * * 6850 * 4784 * * 132
+ 40 6472 5978 1000 1000 4164 83 7446 1017 1928
+
+M 133 4871 * * 6348 5090 * * 4474 * 1217 1519 * * 6008 * 5719 4947 4915 * * 133
+ 26 * 5822 * * 1861 464 7438 0 1966
+
+K 134 5066 6912 * 2810 * 4866 7495 5669 1917 6457 * 4713 * 3385 3233 2939 4174 4613 * 5904 134
+ 11 * 7064 * * 2919 205 7530 0 1801
+
+S 135 2345 4302 4321 6572 * 2225 6538 * 6583 5815 * 3728 * * 5293 1900 3835 * * * 135
+ 51 5736 5982 0 * 3675 118 7543 1068 1740
+
+A 136 2828 * * * 3938 3569 5611 3449 3900 3491 5407 5326 * 3928 5444 4736 3632 2603 * 5526 136
+ 22 6045 * 0 * 3971 95 7541 1043 1810
+
+R 137 5642 5192 7501 3830 6304 3777 5051 6831 2503 * 4526 4931 6428 5031 1968 3346 4859 4555 * 5234 137
+ 71 5357 5404 479 1824 1459 652 7550 1109 1757
+
+N 138 6105 6885 6545 4892 * 6564 6467 7483 6872 4886 6674 4467 5068 5850 * 1773 1190 * * 5080 138
+ 16 6464 * 0 * 1695 533 7557 1014 1624
+
+S 139 3679 * 5839 5139 6187 4964 4216 4555 3388 3765 4761 5678 3584 4373 4504 3743 3465 2745 * 5769 139
+ 121 6339 3875 0 * * 0 7603 1016 1419
+
+C 140 * 1054 * 4150 5207 4537 7167 5078 6270 * * 4166 5124 5726 4768 4248 4037 5237 * 4008 140
+ 283 4563 2883 1435 666 2507 279 7484 1372 1916
+
+W 141 4935 4478 6730 3216 6003 4513 4655 * 4465 * 6949 * 4558 3106 4343 3324 3479 4469 2321 6606 141
+ 250 3465 3861 2336 318 1479 641 7319 1474 2601
+
+S 142 2909 * 4698 6261 * 3957 4683 6258 4809 7058 6550 3587 3840 5169 * 1518 3798 4735 * 7484 142
+ 125 5078 4226 831 1192 2110 380 7360 1190 2453
+
+K 143 4045 * 4189 4892 * 2816 5198 4478 3358 5224 5406 4951 3706 5166 3359 3582 2960 4958 * 6595 143
+ 97 4916 4978 1353 717 1942 435 7338 1190 2452
+
+D 144 4714 * 2894 2997 * 3291 4994 6462 4437 5085 6642 2828 4277 5953 4459 3312 3466 5248 * * 144
+ 294 4945 2721 1449 658 1367 708 7409 1177 2266
+
+A 145 3369 6205 5489 4758 * 3280 4613 6529 3846 5301 * 3957 3512 2974 4271 2548 4425 4958 * * 145
+ 168 4310 4066 1839 473 2051 398 7299 1216 2666
+
+E 146 4866 * 5465 2128 6629 3251 5677 4780 3438 5704 5331 4331 5985 3647 4516 3580 3583 4302 * * 146
+ 313 2966 3894 734 1327 1436 666 7347 1757 2581
+
+Y 147 4456 3588 5693 4832 3452 6061 7687 6840 4491 4536 5684 4753 3050 5541 5151 4315 5277 4268 3973 2390 147
+ 162 3752 4979 1801 488 3319 152 7397 1616 2364
+
+G 148 3979 * 4809 5127 * 1915 4204 5603 4193 5558 6124 4108 4233 5592 5181 6378 4487 5442 2300 * 148
+ 180 4369 3864 1317 740 778 1263 7367 1292 2430
+
+L 149 4987 7632 * 5669 2675 6544 6161 4436 5204 2501 5182 6689 5151 5106 5214 3931 4964 5237 3443 2514 149
+ 56 4713 * 0 * 967 1033 7434 1233 2063
+
+Y 150 6045 4497 4570 3831 5694 5586 3761 7420 4193 6603 * 3044 * 2779 3441 5729 5097 5670 * 2206 150
+ 131 3529 * 0 * * 0 7536 1547 1507
+
+S 151 3775 5257 6875 * * 5902 7142 6755 7475 * * 4409 4225 6364 * 1256 1634 * * * 151
+ 0 * * * * 2611 258 7536 0 1507
+
+I 152 4714 2402 * * * 4745 * 2162 6596 3020 5543 5198 * 7213 6336 2394 7670 3117 * * 152
+ 0 * * * * 806 1224 7532 0 1417
+
+Y 153 6919 * 5132 6410 2182 5251 3462 * * 6575 * 4904 6864 4748 5921 5286 6564 * 6324 1123 153
+ 0 * * * * 1371 705 7590 0 1148
+
+Q 154 6955 * * 6187 5255 * 4238 4328 7328 2006 4984 6970 * 2106 * 3204 2852 3736 * * 154
+ 0 * * * * * 0 7652 0 1068
+
+G 155 2322 * * 6243 5200 708 5156 * * 5606 * 5940 * * * 3827 6355 * * * 155
+ 0 * * * * 0 * 7652 0 1068
+
+G 156 2297 * * 6604 * 795 6621 * * 5228 6627 6347 * 6099 4281 4303 5381 6636 * * 156
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+
+I 157 3850 * 6441 * 5977 5769 * 3405 * 1848 5344 6756 6579 7055 * * 4114 1310 * * 157
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+
+F 158 4568 7092 * 6676 1020 6945 5916 4869 * 3580 * * * 5080 4731 6157 4405 2745 * 5188 158
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+
+L 160 * * * * 5745 * * 6032 * 97 5007 * * * * * * * * * 160
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+
+K 161 4903 * 4449 2440 5504 5825 4185 * 2715 7110 6372 3341 * 3033 2677 4812 4869 * 6413 6438 161
+ 0 * * * * * * 7687 0 0
+
+E 162 1928 * 7348 2783 * 5200 * * 2489 * 6078 6268 4682 3491 3582 3879 4624 4931 * * 162
+ 11 7035 * 0 * * * 7692 1000 0
+
+N 163 6218 * 3769 4270 * 688 5061 * 5729 5937 6574 3212 * 5573 5643 * * 7064 * 6864 163
+ 0 * * * * * * 7692 0 0
+
+D 164 4741 * 578 3193 * * 6037 * * * * 4246 * 4529 * 4723 5221 7055 * * 164
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+
+R 165 5122 * * 2934 * 6827 4440 6060 2701 6619 5993 4857 * 3862 2012 3735 3527 3998 6037 * 165
+ 0 * * * * * * 7692 0 0
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+I 166 * * * * * * * 1552 * 1034 * * * * * * * 2551 * * 166
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+
+F 167 5452 5225 * 4557 2559 5568 5219 4972 6105 5793 6471 * * 4961 4565 1964 6626 4762 4620 2348 167
+ 36 * 5344 * * * * 7692 0 0
+
+V 168 5998 * * * 7059 * * 2881 * 2821 5861 * 6363 * * 5358 2830 985 * * 168
+ 40 5187 * 162 3235 0 * 7622 1295 1149
+
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+ 0 * * * * * * 7692 0 0
+
+V 170 5188 7054 4988 6519 5820 7032 * 3023 * 3243 4653 6146 5162 * * 6286 2758 1272 * 6388 170
+ 0 * * * * * * 7692 0 0
+
+T 171 5977 * 4377 4263 7035 7109 5518 5065 4745 5298 6265 3103 3697 5050 5304 1719 2665 7091 7022 5957 171
+ 146 3378 * 1162 854 * * 7692 1686 0
+
+N 172 4709 * 2411 4677 6150 3615 3262 * 4425 5456 5075 2693 6804 4631 3858 3897 4540 6078 * 4723 172
+ 57 5402 6036 924 1081 0 * 7666 1282 1122
+
+E 173 3698 7075 * 3876 4841 5413 5290 3651 4520 2724 6563 * 1808 5887 4731 3763 5617 4495 * * 173
+ 12 6934 * 1000 1000 807 1224 7681 1000 1072
+
+H 174 4374 5559 3133 3948 * 5086 3924 * 4318 5493 6513 3870 3988 3807 4075 2244 3917 6340 6234 6949 174
+ 217 2839 * 274 2530 0 * 7681 2004 1000
+
+L 175 4196 * 7293 4730 4164 7022 4283 4447 4397 2073 4001 5832 5838 4297 4084 4296 5383 4485 6570 3081 175
+ 110 4040 6340 696 1386 * * 7692 1410 0
+
+I 176 6247 * 6261 6564 5331 * 7020 2535 * 1850 4881 * 5364 6749 * 5090 6106 1634 6478 4801 176
+ 11 * 7080 * * * 0 7623 0 1036
+
+D 177 5497 8472 2032 3505 4587 6137 4625 6031 4440 3760 * 3362 * 4575 3986 2846 * 6189 7039 4379 177
+ 54 6693 5220 1585 585 1000 1000 7611 1016 1131
+
+M 178 5031 6631 5025 * 3340 5627 4734 5670 6871 2712 2881 4525 3933 6068 4271 5386 3252 4175 * 3384 178
+ 134 3628 6971 461 1870 1766 502 7617 1484 1236
+
+D 179 3327 * 2068 3052 5004 4150 5981 * 5859 6345 * 3145 7181 4119 4983 3350 4161 5985 * 5082 179
+ 0 * * * * 1141 871 7645 0 1197
+
+H 180 3848 * 4923 2653 6922 3819 3577 * 3948 6787 5846 4529 2376 3963 4121 3854 5296 5282 * 7270 180
+ 110 3764 * 556 1644 563 1631 7622 1528 1082
+
+E 181 3970 * 2461 2784 * 2422 4018 7061 7890 5714 * 4318 5053 5512 5805 2976 3729 7013 * * 181
+ 14 6661 * 421 1982 0 * 7659 1075 1000
+
+A 182 2841 * 4312 3026 6443 4016 * 5643 2266 5565 6981 4249 * 5535 4111 3217 3976 6861 5834 5170 182
+ 54 4766 * 0 * * * 7693 1213 0
+
+S 183 7103 7334 * * * * 5214 7421 6914 7485 * 2791 * * * 2240 891 4493 * * 183
+ 17 6422 * 2322 322 * * 7693 1023 0
+
+F 184 * * * * 1034 * 6750 5696 * 5661 * * * * * 6350 6599 4215 5807 1439 184
+ 0 * * * * * * 7693 0 0
+
+F 185 * * * * 267 * * 6967 * 3311 5873 * * * * * 6420 * 4991 * 185
+ 0 * * * * * * 7653 0 0
+
+G 186 * * * 7045 * 76 * * * * * * * * * 5724 * 6238 6420 * 186
+ 0 * * * * * * 7653 0 0
+
+A 187 1579 * * * 6992 * * 3490 * 2058 3411 7045 * * * 6965 5045 2408 * * 187
+ 6 7846 * 1000 1000 * * 7653 1000 0
+
+F 188 * * * * 985 * 4574 2626 * 4922 5269 * * 5888 * * 6966 3504 * 3072 188
+ 0 * * * * 0 * 7660 0 1000
+
+L 189 3153 * * 4909 5151 7574 * * 1648 2556 2376 * * 5644 3148 7295 * * * * 189
+ 0 * * * * * * 7592 0 0
+
+V 190 * * * * 5897 * * 2229 * 1118 5208 * * 5886 * * * 1987 * 6255 190
+ 0 * * * * * * 7454 0 0
+
+G 191 3172 * 3643 * * 1666 * * * 5251 * 3667 * * * 1429 * 5848 * * 191
+ 0 * * 0 * * * 6019 0 0
+
+//
+�HHsearch 1.5
+NAME abf7361a887c4e53ac97adc19e64234b
+FAM
+FILE abf7361a887c4e53ac97adc19e64234b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:15:45 2013
+LENG 220 match states, 220 columns in multiple alignment
+FILT 120 out of 1461 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCCCCCEEEEECCCCCEEEEEECCCCHHHCEEEEEEE
+ECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCEECCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCCCEE
+EEEEEECCCCEEEEEECCCC
+>ss_conf PSIPRED confidence values
+9089787878996899899998963888888579999947999847999997315788604356667517998527897579998347764674999998
+5598861101412677787500001312642875211059769999996676899759998998315772000127629968999999996234689769
+99999089729999953799
+>Consensus
+xvxlxxxxxxxxxxGxxvtLxCxxxxxxxxxxxvxWxkxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxsLxIxxvxxxDxGxYxCxv
+xxxxxxxxxxxxxxxlxvxxxxxxxpxvxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxSxLxixxxxxdxxxy
+tCxvxxxxxxxxxxxxxxxp
+>abf7361a887c4e53ac97adc19e64234b
+EVKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTR
+GGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTV
+ICNVAHPASKVDLIKEPSGP
+>gi|62464905|gb|AAX83161.1| immunoglobulin heavy chain variable region [Aotus nancymaae]
+--------------GDPVPHLRCLWLLHRQ-------willeldpPAPKGRG--WSGldisivwWVHQ-L-QRLPQES-----sh---YFSRHVQEPVLV
+E---------AE-LCDRR----------------------------------------------------------------------------------
+-------------------------------------
+>gi|50428758|gb|AAT77091.1| anti-HCC scFv antibody [synthetic construct]
+EIVMTQTPLsSPVTLGQPASISFRSSQS-LVHsdgNtYLSWLQQRPGQPPRLL--IY-----KVSNRFSGGPRQIQ--WQwGQGQIFTLKNQQGWKLRMS
+GFITARKLHN--FRvgTFGPRDQAGNRRAAA---------------------------------------------------------------------
+----------------------------
+>gi|207200|gb|AAA42213.1| T-cell receptor beta chain precursor [Rattus norvegicus]
+---VIQSPRHLVKgKEQKARMQCTPI---KEHSYVYWYYKKLGEDLKFLVyFQN----TDIIDKTDMIKKIISAEC-FT-NKTCTIeIKSSKLTDSAVYY
+CASSQGGQgsqNTLFFGXGTRLSVLE--------------------------------------------------------------------------
+--------------------------
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+-----------------------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAAQN-------
+-----tqrkweaagvaeqw---RAYL--EGECLEWLRRYLEKG--K-------------et--LQ--raEPs-SQ
+>gi|221330930|ref|NP_001137898.1| CG42256, isoform F [Drosophila melanogaster]gi|220902492|gb|ACL83253.1| CG42256, isoform F [Drosophila melanogaster]
+--------------------vaknpaaeikytallqvKGSVLAYPS--QKLN-TEHK-KRKPHKYRshllskl---------------------------
+-kLSQCSLTLAA----slkp----FI--------------------------------------------------------------------------
+-------------------------------------------------
+>gi|38382894|gb|AAH62459.1| BTNL9 protein [Homo sapiens]gi|119574109|gb|EAW53724.1| butyrophilin-like 9, isoform CRA_a [Homo sapiens]
+--VLGPEYPILALVGEEVEFPCHLWPQLDAqQMEIRWFRSQTFNVVHLY--QE--QQELPGRQMPAFRNRTKLVKDDiAYGSVVLQLHSIIPSDKGTYGC
+RFHSD----NFSGEALWELEVAGLGSDPHLSLEGF-----KEGGIQLRLRSSGWYPKP-KVQWrDHQGQCLPPEFEAIVWDaQDLFSLETSVVVRAGAL-
+-SNVSVSIQNLLLSQKKELVVQIA
+>gi|312373456|gb|EFR21197.1| hypothetical protein AND_17411 [Anopheles darlingi]
+------KPVMDAVEGQSFSVMCNATGKPV--PEFQWIKQGTQQNAADL-------------------DRFSVN----AITGQLDISKVEQQDHDSYACIA
+RNPAG---QSESVMKPNVL----IRPKIIELINITVS-EDTEAVFVCKAFGRPEPEITFRRygtleeysIGLQVSDDRIQLEQSVDVDKGESVGTLRISK
+VTTtDDGLYECIARNRGDvafkagHITVEYSPI--
+>gi|260841781|ref|XP_002614089.1| hypothetical protein BRAFLDRAFT_67325 [Branchiostoma floridae]gi|229299479|gb|EEN70098.1| hypothetical protein BRAFLDRAFT_67325 [Branchiostoma floridae]
+SISLTLPKSVNTIVGDPITLPATYQT-QRRVISVVWNKLNPQDSEKRIPVFSYFPLLGSTESFGTYSGRAELAGK-----ASIKIDATTVQDEGKYVLTV
+-------TVDGLPPEEgFVTVNMMVPPVVDVGPANPYVTAsGRSASLTCAVKDARPNITSLYWEKDGVRVDNLRFDTKYSGGNIQSPNLLIRHVTRGDAG
+RYKCVADH--------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+E 1 4274 * 2751 2674 * 4487 3310 * 4256 4428 * 4538 4666 1868 * 4554 * * * * 1
+ 0 * * * * * * 6959 0 0
+
+V 2 * * * * 3437 4874 * 3332 * 3170 * 4720 * 5222 * 4955 4933 999 * 4923 2
+ 0 * * * * * * 7971 0 0
+
+K 3 4577 * 3666 4213 4472 4484 * 5398 3840 * * 5395 * 3385 4075 3345 3339 2078 * 5100 3
+ 0 * * * * * * 8567 0 0
+
+V 4 4495 * * * 4494 * * 5370 5619 1234 4381 * 5365 * * * 3913 1722 * * 4
+ 0 * * * * * * 8876 0 0
+
+E 5 5427 * * 3311 * 5757 5615 4608 5600 5355 4468 * * 2252 * 3291 1690 3575 * * 5
+ 32 * 5494 * * * * 8974 0 0
+
+E 6 3460 * 5342 4016 * 5502 4591 5503 4663 4596 * * 2989 2245 3625 4126 4079 3038 * * 6
+ 113 3736 * 336 2267 0 * 8935 1502 1015
+
+S 7 4156 * 4849 3591 5784 4077 * 5740 5716 4525 * 6046 1267 4626 5854 3847 3437 5854 * * 7
+ 27 * 5740 * * * * 8967 0 0
+
+G 8 * * 4824 3451 * 2327 * 5669 4162 5761 * 5804 1961 4399 3836 2898 4827 5754 * * 8
+ 0 * * 0 * 0 * 9051 1011 1011
+
+G 9 3924 * 3987 3946 4780 5854 4440 4875 5133 4233 5790 2966 3260 4820 * 2412 3938 4275 * * 9
+ 26 5808 * 0 * * * 9164 1055 0
+
+G 10 5082 * * 5121 * 6079 5052 3646 4551 2607 4513 5901 5076 3956 6081 4441 5244 1538 * 5391 10
+ 22 6074 * 1585 585 * * 9433 1022 0
+
+L 11 4011 * 4560 4058 5147 * 6184 3253 6084 4236 * 4322 4693 4725 3655 3001 2635 3311 * 5144 11
+ 40 5179 * 0 * * * 9624 1232 0
+
+V 12 2417 * * 5161 5362 4285 * 4059 4705 4359 5125 * * 6401 4751 4253 4102 1527 * 5221 12
+ 0 * * * * * * 9743 0 0
+
+Q 13 3316 * 6770 3823 * 4375 4861 4351 3154 3111 5211 4502 3738 3694 5147 4658 3996 3234 * * 13
+ 15 6597 * 0 * * * 9770 1000 0
+
+P 14 3265 * * 1667 6301 * * 6727 3949 2981 6364 * 3807 * 4182 3970 4341 3668 * 4752 14
+ 0 * * * * 0 * 9967 0 1000
+
+G 15 6557 * 5191 3898 * 562 * * 6676 6541 * 3696 * 5046 6429 4423 5483 6808 * * 15
+ 15 * 6557 * * * * 10142 0 0
+
+G 16 5837 * 2695 2269 * 2593 5758 * 3972 5594 * 4470 * 3004 4939 3364 5084 5443 * * 16
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+
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+
+V 149 1919 6032 * * 4667 6632 * 2639 * 5173 * 7604 6411 * * 3124 5181 1810 * 4709 149
+ 42 5833 6484 3000 193 * * 10208 1151 0
+
+K 150 4796 * 4764 3013 5097 6357 4680 6435 4193 4204 6555 4512 5207 3743 4372 2327 3288 3925 5626 6624 150
+ 40 5185 * 2511 278 * 0 10191 1468 1048
+
+G 151 4093 6992 3499 4396 6594 1581 6939 6907 3573 5807 * 3351 * 4693 4218 3266 5610 6642 6677 * 151
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+
+Y 152 3594 7005 5720 6422 2382 2642 6606 5758 5449 5126 6105 5215 * 4657 5179 2747 5715 3987 6524 3383 152
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+
+F 153 4698 5215 6441 * 3748 5116 4646 6390 2803 5351 * 5391 3372 * 2855 3461 4825 * 7308 2258 153
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+
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+
+E 155 3583 * 3358 2701 * 4009 5167 5664 3660 4387 5020 4537 3499 4189 3817 3566 5510 5287 * 6868 155
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+
+P 156 3276 * 3369 3865 * 3461 5091 4595 5121 4731 * 4361 1845 5255 5023 4919 4500 5555 6545 6605 156
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+
+V 157 3258 * 6194 6348 4867 * 5264 2147 * 2764 5315 * 5458 6210 5187 5219 4337 2359 6403 3957 157
+ 181 * 3084 * * 0 * 9774 0 4490
+
+T 158 4754 * 4251 3283 6409 5043 5398 6480 4056 6246 * 2802 5656 3176 4476 2651 2828 5724 6396 7011 158
+ 41 5812 6640 1000 1000 178 3110 10060 1119 2457
+
+V 159 * * 6365 * 3347 * 5911 2199 5654 2450 5571 6994 6321 * * 5262 * 1701 5043 4415 159
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+
+K 160 5006 * 4224 4390 6068 5688 4977 5415 4089 5025 5783 4350 7577 4241 3253 2749 2370 4805 * 3635 160
+ 11 * 6982 * * 0 * 10194 0 1000
+
+W 161 * 7577 * * 6766 * * * * 5411 * * * * 5776 5927 * * 128 6344 161
+ 1890 550 4408 1125 885 * 0 10158 8232 1105
+
+N 162 5617 * 2907 3985 6750 3981 5591 6509 2306 5012 6502 2898 6457 5177 3409 3709 5637 6626 * 4045 162
+ 32 5515 * 1535 611 * 0 10020 1181 1902
+
+Y 163 5350 * 3379 3755 6362 1687 5731 * 3740 5593 * 2622 6587 6642 4505 3453 5722 6638 6581 6574 163
+ 66 4863 6601 395 2061 * 0 10020 1393 1902
+
+G 164 3858 * 3034 3220 * 1783 5661 6574 4502 6502 7823 4008 6415 4409 3546 4212 4270 6833 * * 164
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+
+A 165 3048 * 3976 2810 6834 3539 * 4601 3271 4030 5702 4299 4209 4489 3873 3963 5492 4353 * * 165
+ 91 * 4027 * * 1340 725 10012 0 1905
+
+L 166 6260 6793 4701 3625 5175 7460 * 2400 6325 2362 4442 6587 5742 * 4209 4274 4472 2549 5503 6671 166
+ 112 6195 4036 2807 222 * 0 9924 1018 2509
+
+S 167 5680 * 4075 4184 5425 5285 * 3798 4643 3084 4962 4854 3473 4977 3818 3154 3059 3585 6330 * 167
+ 33 5477 * 1302 750 3831 105 9834 1203 3350
+
+S 168 4742 6277 3812 3429 * 4303 4853 3743 4191 3345 5383 3830 4176 3953 4887 3168 4445 5006 6184 5476 168
+ 13 6753 * 1000 1000 * 0 9793 1000 3195
+
+G 169 3799 5467 2692 3949 6384 2457 4556 4678 * * * 4920 4607 5301 5514 3264 2970 4883 * 5423 169
+ 75 4309 * 1052 949 1915 444 9793 1580 3195
+
+V 170 4673 * 4049 4153 3934 4719 6306 3687 5714 3248 6275 4418 4684 4252 6412 3619 3716 2471 * 5292 170
+ 57 * 4681 * * 1178 842 9936 0 2624
+
+R 171 4610 * 5639 4227 4922 4865 3583 3799 3994 3920 4784 4301 4566 4661 4299 3500 3070 3696 * 5065 171
+ 96 5581 4528 2198 355 2145 370 9929 1187 2414
+
+T 172 4933 * 4055 4413 * 5467 5766 6314 3968 4562 5070 2997 4391 3309 3902 3376 2314 6373 * 5620 172
+ 16 6495 * 0 * 3684 117 9912 1000 2699
+
+V 173 4592 * 3934 5105 2904 4382 5774 4390 3954 3632 * 5627 5621 5599 6802 2456 3135 4089 6475 4831 173
+ 37 6036 6599 3000 193 284 2485 9919 1109 2566
+
+S 174 4766 * 4966 3147 5530 4043 5546 5174 5619 4123 6581 5541 2649 5509 4555 2676 2863 5700 7076 4926 174
+ 46 6645 5563 1000 1000 * 0 10034 1000 1343
+
+S 175 4162 * 4743 4184 5846 3663 4261 4217 5550 4688 4617 4889 3955 3373 5146 2882 3204 4300 * 5024 175
+ 35 6479 6312 1585 585 1382 699 10003 1014 1708
+
+V 176 4874 * 4507 3348 4734 4438 4369 3549 3949 4522 5496 4008 4209 5011 4200 3932 4561 2684 * 6553 176
+ 49 6079 5744 0 * 1251 786 9987 1109 1762
+
+L 177 * 6433 3915 3633 5561 5088 5597 5578 3296 3115 5560 3762 4540 3820 2956 3626 4704 4497 * 5016 177
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+
+Q 178 3827 5209 3971 2864 * 4285 6330 4161 3989 4125 5369 3147 4258 3494 4580 4844 4330 4437 * 6540 178
+ 770 1273 * 965 1036 575 1606 9764 5829 3502
+
+S 179 4094 * 1924 3160 * 2996 * 6163 6433 6135 5727 3030 5020 5431 5594 2958 4897 5465 * * 179
+ 50 5464 6472 0 * * 0 10004 1241 1788
+
+G 180 5194 * 3066 3913 7028 1310 6397 * 4383 6126 * 3804 5060 5812 5597 3268 5296 5475 6657 * 180
+ 34 5413 * 0 * * 0 9982 1224 1967
+
+F 181 * * 3932 5109 5599 5529 * 5115 3164 2624 5704 4618 * 4577 3711 3443 2157 4195 * 6420 181
+ 189 3470 4953 828 1195 * 0 9982 2363 1967
+
+Y 182 4812 5818 5677 5736 2223 5454 4420 4908 6765 3656 * * 5623 5464 6761 4837 4915 4204 6769 1648 182
+ 31 6337 6761 3907 100 1752 508 9918 1000 2492
+
+S 183 4605 * 4391 3688 6588 6649 4777 * 4598 4054 6412 3781 5738 4002 5223 1820 2610 5043 * 7487 183
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+
+L 184 3756 5550 6551 6640 6431 3958 5407 3047 4561 3200 3858 * 5525 * 4074 3991 3092 2718 5057 * 184
+ 77 * 4258 * * 3184 168 9935 0 2343
+
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+ 22 6019 * 1000 1000 2641 252 9868 1044 2934
+
+S 186 3403 5300 6495 * 6450 4419 * 6732 5662 4553 6732 4024 * * * 718 4983 6565 * 5805 186
+ 33 5472 * 1311 745 * 0 9900 1156 2626
+
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+ 101 3880 * 2325 321 234 2740 9900 1882 2626
+
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+ 0 * * * * * 0 10044 0 1105
+
+T 189 5897 * 5253 3809 * 5020 5482 3190 3932 3234 6683 3716 6534 5617 3945 4113 2149 4014 * 5375 189
+ 13 6814 * 2322 322 * 0 10044 1038 1105
+
+V 190 6872 * * * 3645 6542 * 1803 * 1638 * * * * 4985 * 6734 2481 5614 4247 190
+ 27 5749 * 0 * * 0 10044 1178 1105
+
+P 191 6382 * 4315 4979 * 6639 4144 * 4419 4130 5471 3656 3475 3749 3544 2957 2360 4056 * * 191
+ 0 * * * * * 0 10030 0 1105
+
+S 192 3121 * 4273 4535 5546 6428 5865 4059 4454 3902 6654 3847 2552 5036 4098 4036 3501 3838 6720 * 192
+ 0 * * * * * 0 10003 0 1105
+
+S 193 3831 5726 4763 4250 6479 4223 6244 6724 4239 4316 6880 4631 6436 3873 5013 2746 2421 3369 6553 5159 193
+ 38 * 5273 * * * 0 10003 0 1105
+
+T 194 3779 * 3586 3248 * 3807 6384 5350 3329 3155 * * 4946 3777 3050 3103 4937 4940 * 6475 194
+ 125 * 3596 * * 2078 390 9980 0 1654
+
+W 195 4082 6517 5048 3226 5768 5402 4418 5359 5696 2082 * 6481 4905 4788 3595 4241 4920 4430 3078 6631 195
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+P 196 5612 * 1228 3551 * * 3979 * 4254 6389 6483 3469 3956 * 3627 4903 4630 * * 5732 196
+ 385 2232 5545 370 2143 342 2245 9925 3833 2136
+
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+ 414 2005 * 57 4682 1926 441 9973 4511 1504
+
+Q 198 2813 * 4208 4279 * 1457 * * 3036 * 4777 5003 * 4930 4993 4658 4191 5471 * 5861 198
+ 15 * 6552 * * * 0 9987 0 1326
+
+T 199 5771 * 4394 3906 6475 6553 6911 5066 4644 4410 5732 3593 4890 5788 4594 3303 2018 2681 5548 * 199
+ 110 3770 * 0 * 1975 423 9973 2028 1496
+
+V 200 * * * * 2722 * 6419 4489 * 3057 * * * * * * * 2866 5666 957 200
+ 14 * 6742 * * 822 1203 9987 0 1326
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+
+C 202 * 17 * * * * * 6398 * * * * * * * * * * * * 202
+ 0 * * * * * 0 10036 0 1015
+
+N 203 3630 6598 * 2803 * 6420 6478 3275 3919 5027 4967 5270 * 2785 3548 3999 4343 3146 * 5086 203
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+
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+
+A 205 3844 * 3490 4163 6533 5423 6413 6418 4366 5329 * 4016 6587 3897 3607 2145 2356 6389 * * 205
+ 0 * * * * * * 9867 0 0
+
+H 206 * 6699 * * 4937 * 1327 * 6777 6394 * 1729 * 3452 6402 4379 5315 6409 * 4375 206
+ 33 6317 6645 1000 1000 * * 9851 1000 0
+
+P 207 5306 5939 3766 3098 6380 3436 * 6435 3133 6112 * 4665 3236 3783 3781 2868 4398 6786 * 4669 207
+ 0 * * * * * 0 9678 0 1105
+
+A 208 2880 * 6090 4707 5412 2264 * 6199 6032 4588 6490 3943 5017 4690 4814 2084 * 4496 5992 4969 208
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+
+S 209 5782 * 5955 4906 4779 1871 * 4680 4341 2898 6027 4379 5882 3804 5086 3137 3947 4644 * * 209
+ 1294 756 * 1878 458 * 0 9245 5642 1105
+
+K 210 3891 * 5700 4620 5605 4141 4281 6219 4269 6591 * 5737 2437 4601 4247 2607 2741 4126 * * 210
+ 0 * * * * 0 * 9056 0 1105
+
+V 211 2999 * * * 4305 4688 * 2560 4227 2562 * 6126 5844 * 6020 4760 5132 1833 * * 211
+ 0 * * * * * * 9008 0 0
+
+D 212 5913 * 2911 2135 6054 * 4829 4966 4714 * 5659 3768 6060 3730 4250 2902 3349 5713 * 6015 212
+ 46 6126 5894 3000 193 * * 9008 1000 0
+
+L 213 4714 * * 6009 6024 5799 3969 4361 2275 3588 5984 5602 * 4842 3851 4826 3700 2158 * 4881 213
+ 0 * * * * * 0 8984 0 1015
+
+I 214 4816 * * 3739 5594 5696 * 5868 5619 4304 * 3224 4469 4277 4040 2240 2082 4918 5968 * 214
+ 0 * * * * * 0 8984 0 1015
+
+K 215 * * * * 3763 * * 1822 5828 2620 4250 * * 4594 * 4292 4754 2154 6021 4604 215
+ 0 * * * * * 0 8887 0 1015
+
+E 216 4523 * 5233 3091 5286 * * * 2760 * * 3330 2842 * 2970 3002 3068 * * 5125 216
+ 56 4727 * 0 * 0 * 8502 1016 1015
+
+P 217 4947 * * 4691 4705 4638 * 3624 3145 3576 * * 1413 4875 4854 4847 * 3419 * * 217
+ 0 * * * * * * 7397 0 0
+
+S 218 3669 * 4831 3023 * * 4503 3704 4718 * * * 3696 * 3950 1577 2974 * * * 218
+ 0 * * * * * * 7238 0 0
+
+G 219 3294 * 3404 * * 2672 4255 4474 4196 * * * 4474 * 3084 2403 4513 4464 * 4222 219
+ 0 * * * * * * 6742 0 0
+
+P 220 3922 * * 3930 * * * * 3840 * * * 324 * * * * * * * 220
+ 0 * * 0 * * * 5814 0 0
+
+//
+�HHsearch 1.5
+NAME ae209f299335d3708222d92bc2697502
+FAM
+FILE ae209f299335d3708222d92bc2697502
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:22:48 2013
+LENG 116 match states, 116 columns in multiple alignment
+FILT 101 out of 375 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEECCCEEEECCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHH
+HCCCCCCEEEEEEECC
+>ss_conf PSIPRED confidence values
+9855454315603998579988899799999979998599999927998789738636988999799999978999888889999999999986999996
+2589786099999729
+>Consensus
+xxxxxxxxxxxxxxpxxxxfxxxggxxxlxLxNxsxxrvaFKVKtTxnxxyrVrPxxGxIePgxsxxIxIxxxxgxxkxDKflixxxxxxxxxxdxxxxw
+kxxxpxgxxxixlxax
+>ae209f299335d3708222d92bc2697502
+MGHHHHHHSMINVDPPTGNYPATGGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPGPPKEDKIVIQYAEVPAEETDPMAPF
+KAGAQQGEIIVKLIAA
+>gi|115533618|ref|NP_491051.3| hypothetical protein W03D8.5 [Caenorhabditis elegans]gi|90568079|gb|ABD94094.1| Hypothetical protein W03D8.5 [Caenorhabditis elegans]
+-------------PPGQLLFTPDECQEKLTITNTHDKKIMYKLKLSDNIAFQLNPVFGVLEPGKSVDVAVTHRKSEPMEGKLIIVNSLLTGDEDKVKELF
+KQITkPTGdSVHVKLI--
+>gi|193207282|ref|NP_506565.2| hypothetical protein C15H11.1 [Caenorhabditis elegans]gi|169402782|emb|CAB02735.2| C. elegans protein C15H11.1, partially confirmed by transcript evidence [Caenorhabditis elegans]
+------------------------QKTILKITNQSEMKQAFKVKCTRNDLFRIKPSTGILDYNQTLTVILVYRGGQETvpiDRQHFGVYHIpAPENCTC-
+EGAWAEhyGPPQGEHKLRVV--
+>gi|17534907|ref|NP_495146.1| hypothetical protein K05F1.9 [Caenorhabditis elegans]gi|868179|gb|AAA68716.1| Hypothetical protein K05F1.9 [Caenorhabditis elegans]
+---------------TTVTFTNPKlGdevtIASLNLTNPTKDRYAFKIKCTSNQLFKIKSPVGYINPEESLTIPVYHYPATVIpenNKHyFVVYYIKAAn
+tvKEKIPVRDLWKAAaSSEGTRRVFI---
+>gi|313240732|emb|CBY33049.1| unnamed protein product [Oikopleura dioica]
+------------------------SasKSKQLHPKGNFENARF-FTKNAKKRYCVRPNTGVIEPYQSKEIKIALQPGDINqRHKFMIQSIVYPKNytdfn
+te--ELQRIWSSKSNnk-----------
+>gi|70994708|ref|XP_752131.1| integral ER membrane protein Scs2 [Aspergillus fumigatus Af293]gi|66849765|gb|EAL90093.1| integral ER membrane protein Scs2, putative [Aspergillus fumigatus Af293]
+--------------------------EILHLSNTNSEPVVFKVfSKCAPRKvayhdrtltsLCVLGQNNRSEAllrsaqlrtdrtrqecgcprlihilkl
+vlqplmGVLISRTVLLQAMkeePapdAKcKDKFLVQTVAVTGDMefSNVSSIF----------------
+>gi|145499313|ref|XP_001435642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|74830029|emb|CAI38987.1| VAMP-associated protein 3-1 [Paramecium tetraurelia]gi|124402776|emb|CAK68245.1| unnamed protein product [Paramecium tetraurelia]
+----------------ILEFMAEEnrfAHAQLTLQNLQSQPVAFKIKTTVPQMFQVKPSVGFIEADRSTIVEISTTQ-AIGqdqklDAKFQINACFRDSN
+EQDLNQFWRSRD------------
+>gi|145545552|ref|XP_001458460.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124426280|emb|CAK91063.1| unnamed protein product [Paramecium tetraurelia]
+----------------SLQFQEGQlNQLKFKITNVSDVPITFRIRCNNNTNYKLDHYMGLIHSHQDFENNIQNFEAAdLKlpGDQLEIQYAEFLDPLQDL
+KDFWKSTQSQDHVMIPI---
+>gi|340716611|ref|XP_003396790.1| PREDICTED: motile sperm domain-containing protein 2-like [Bombus terrestris]
+---------------DAFIFNKVGNeiSGTITIKNITlDKPLSYKVKTTSPGKFKVRLSSGVLLPQEQRTISVVVQQEHnmrspFHVDKFLVMCLPLKDp
+naSAQELAVLWKSEKPAEEHK------
+>gi|268568010|ref|XP_002640135.1| Hypothetical protein CBG12634 [Caenorhabditis briggsae]
+-----------------------MTCNELTLKNHSKFAVLFKVKCTSNKRIKIEDCSEILRPGNQTSVPI-KLVDNIDGDSLYVIYTLVGKQWhderMSA
+FRCWErakkQDVPTKCVSIRIK--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+G 2 * * * * * 0 * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+H 3 * * * * * * 0 * * * * * * * * * * * * * 3
+ 0 * * * * * * 1000 0 0
+
+H 4 * * * * * * 0 * * * * * * * * * * * * * 4
+ 0 * * * * * * 1000 0 0
+
+H 5 * * * * * * 0 * * * * * * * * * * * * * 5
+ 0 * * * * * * 1000 0 0
+
+H 6 * * * * * * 0 * * * * * * * * * * * * * 6
+ 0 * * * * * * 1000 0 0
+
+H 7 * * * * * * 0 * * * * * * * * * * * * * 7
+ 0 * * * * * * 1000 0 0
+
+H 8 * * * * * * 0 * * * * * * * * * * * * * 8
+ 0 * * * * * * 1000 0 0
+
+S 9 * * * * * * * * * * * * * * * 0 * * * * 9
+ 0 * * * * * * 1000 0 0
+
+M 10 * * * * * * * * * * 0 * * * * * * * * * 10
+ 0 * * * * * * 1000 0 0
+
+I 11 * * * * * * * 0 * * * * * * * * * * * * 11
+ 0 * * * * * * 1000 0 0
+
+N 12 1589 * * * * * * * * * * 1545 * * * 1623 * * * * 12
+ 0 * * * * * * 1771 0 0
+
+V 13 2435 * 2668 * * * * 2153 * 3161 * * * * * * * 1639 * * 13
+ 0 * * * * * * 3178 0 0
+
+D 14 * * 1697 3341 * * * 3847 * * * * 1416 3460 * * * 4116 * * 14
+ 0 * * * * * * 4398 0 0
+
+P 15 * * * * 4400 4370 * * 4121 * * 4201 573 4060 4049 * * * * * 15
+ 0 * * * * * * 4671 0 0
+
+P 16 5342 * 3474 2975 * 3544 4681 * 3384 * * 3466 2326 5150 3528 5220 3834 4796 * * 16
+ 0 * * * * * * 5349 0 0
+
+T 17 2802 * 5453 2950 4376 * * 3785 2863 * * * 5585 5460 * 3283 2691 3373 * 4366 17
+ 31 5550 * 4524 64 * * 5873 1000 0
+
+G 18 2899 3060 * * * 5780 * 2446 * 1476 * * * * * * * 2434 * * 18
+ 0 * * * * * * 5883 0 0
+
+N 19 5430 * 5415 2521 * * 5731 4760 4422 4707 * 3998 3134 2800 3807 4375 2471 5763 * * 19
+ 0 * * * * * * 5971 0 0
+
+Y 20 * * * * 625 * * 2845 * 4570 * * * * * * * 4160 4135 4124 20
+ 30 * 5602 * * * * 6010 0 0
+
+P 21 4061 5590 5437 * * * * 4623 3470 4513 5390 3621 2496 3284 4331 3702 2757 4809 5248 * 21
+ 63 4549 * 1585 585 * 0 6034 1041 1000
+
+A 22 2143 3506 4445 4403 3991 * * 5924 4156 3495 * 4363 4192 4387 4591 4472 4233 4157 * 5549 22
+ 70 4409 * 549 1660 0 * 6034 1065 1000
+
+T 23 3654 * 4311 3056 5779 4326 * 3773 4708 4113 * 4907 4028 4576 * 2445 2568 5391 * * 23
+ 56 4713 * 0 * * * 6055 1107 0
+
+G 24 * * 4521 2746 * 901 * 4907 4405 5433 * 5580 * 4685 * 3519 5563 * * * 24
+ 421 2124 5392 953 1048 * * 6131 1647 0
+
+G 25 3794 5202 * * * 1115 * 4522 5294 4361 5624 3407 * 5698 * 2835 4921 6126 * * 25
+ 121 3635 * 1280 765 * 0 6350 1256 1027
+
+N 26 5268 5707 6805 4494 4758 * 5090 4831 3090 4171 5300 6787 * 2967 6502 2604 2240 4256 * 5302 26
+ 31 5554 * 1674 542 * 0 6486 1067 1027
+
+S 27 2707 3623 * 4163 * 4552 * 4927 3695 5013 * 5881 * 4021 4020 2346 3577 3244 * * 27
+ 0 * * * * * 0 6568 0 1107
+
+T 28 * 6882 5142 3927 5506 * 4545 3909 2761 4319 6224 4392 5914 5535 4126 3229 2041 4715 * 5361 28
+ 0 * * 1000 1000 1123 887 6589 1013 1107
+
+H 29 5450 * * * 3723 * 2714 2973 * 1413 4906 * * 5581 * * * 2382 * * 29
+ 0 * * * * * 0 6614 0 1027
+
+N 30 6782 * 6287 4634 6687 5741 4032 4893 2110 4435 4332 4615 * 5306 4717 5072 1992 3501 * 6211 30
+ 0 * * * * 0 * 6628 0 1027
+
+I 31 * * * * 4913 * 5604 1769 * 990 6276 * * * 5481 * 6696 3262 * * 31
+ 0 * * * * * * 6646 0 0
+
+T 32 5398 * * 3903 5154 * 4553 3359 2358 6921 6522 5052 5604 5180 3982 3470 2379 3913 * 4769 32
+ 0 * * * * * * 6646 0 0
+
+S 33 4722 * * * * * * * 5604 * 5789 169 * * * 4875 * * * * 33
+ 0 * * * * * * 6646 0 0
+
+E 34 5263 * 3947 4855 6140 5049 4635 3170 6220 4294 * 4372 2417 5418 5986 4425 2218 3677 * * 34
+ 45 * 5037 * * * * 6646 0 0
+
+S 35 4876 5579 5328 * * 3380 5807 * 6187 6476 * 3630 * 5047 * 1539 1734 * 6271 6293 35
+ 23 6003 * 0 * 1834 475 6585 1085 1102
+
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+A 116 822 * * * * * * * * * * 2184 * * * * 2223 * * * 116
+ 0 * * 0 * * * 2184 0 0
+
+//
+�HHsearch 1.5
+NAME af5e37f6170ad6dd671732b9beb56903
+FAM
+FILE af5e37f6170ad6dd671732b9beb56903
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:30:34 2013
+LENG 215 match states, 215 columns in multiple alignment
+FILT 130 out of 1360 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCEEEECCCCEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEEC
+CCCCEEEEEEEEEEEEEECCCCCEEECCCCCEECCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEE
+EECCCCEEEEEEECC
+>ss_conf PSIPRED confidence values
+9299488858996899799999965788888789999927999827999995278840325766772588404788806898823300356208998864
+9853366667777864101465123058741112799699999984656998599988996857731024571799699999999953346898799999
+938987589999539
+>Consensus
+xxxxxxpxxxxxxxGxxvxLxCxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxLxixxvxxxDxgxYxCxvxx
+xxxxxxxxxxxlxvxxxxxxxpxxxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxsxlxixxxxxxxxxytCxv
+xxxxxxxxxxxxlxx
+>af5e37f6170ad6dd671732b9beb56903
+QVQLQQSGAELVKPGASVKLSCKASGYTFTSYWMQWVKQRPGQGLEWIGEIDPSDSYTNYNQKFKGKATLTVDTSSSTAYMQLSSLTSEDSAVYYCANLR
+GYFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSV
+AHPASSTTVDKKLEP
+>gi|326674722|ref|XP_689309.4| PREDICTED: poliovirus receptor-related protein 2-like [Danio rerio]
+-QHVRVEPEVVSFPGQTVTLRCQFPNPGDTqLTQVSWIFERTDTERTNIAVFHPNFGVNYPTTSPvSGRVTFVSNPpTLDNPSIQIKDVKMTDEGRYICE
+-----YATYPSGNEqgvssLVMLAKPKNTATTVTVSAGKTPVI----VARCESSNGRP-AATITWSTALNGNVTTPKKTDNPDNTVSIQSVYMLaPQPED
+NGKDISCIVSHRTMAQPETFPMK-
+>gi|145408204|gb|ABP65664.1| MHC class I antigen [Sus scrofa]
+----------------------------------------------------------------------------------------------------
+-------------------------------------htyqwmygcylgpdglflrgysqfgydgadyvalne--DLRSWTAADMAAQI-----------
+--skrkweaadeaerm--RSYL--QGRCVEWLQKYLEMGK-----------------dt--------
+>gi|2114481|gb|AAC02653.1| butyrophilin [Homo sapiens]
+-IVVGPTDPILATVGENTTLRCHLSPEKNAEDmEVRWFRSQFSPAVFVY--KGGRERTEEQMEEYRGRTTFVSKDiSRGSVALVIHNITAQGNGTYRCYF
+QEG-RSYDEAILHLVVAERLGSKPLISMRGHEDGG-----IRLECISRGWYPKPL-TVWrdPYGGVAPALKEVSMPDADGLFMVTTAVIIRDKS--VRNM
+SCSINNTLLGQKKESVI--
+>gi|17542472|ref|NP_499896.1| hypothetical protein T21D12.9 [Caenorhabditis elegans]gi|14670183|gb|AAK72063.1|AF016687_10 Small protein 10, isoform a, confirmed by transcript evidence [Caenorhabditis elegans]
+---VRQPVEVSTLIGEKARFTCNVYGASP--LSIEWRVMENGQPRVLVqdsATFLSINRTAVVNGTFDERELAAAE-------LLLDNVAMTDNSEYQCV
+ARNR----FGSDFSTHVKLQVYQAPKFTYTPEDMPLLVGQTAKFLCAATGT-PRPE-IKWafEQIPFPAAEARRLYVTPndDHIYIM----NVTKED--Q
+GAYTCHATNVAG----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 5998 0 0
+
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+ 0 * * * * * * 8319 0 0
+
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+ 0 * * * * * * 9025 0 0
+
+L 4 5847 * * 5848 4654 4620 * 3745 * 1481 4097 * 4268 5937 5704 4776 3918 2296 * * 4
+ 0 * * * * * * 9572 0 0
+
+Q 5 4627 * 5295 2787 * 5745 * 5248 5283 4722 * * * 2703 5863 2486 2512 2680 * * 5
+ 0 * * * * * * 9879 0 0
+
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+
+S 7 5031 * 4646 4543 * 4704 6099 5559 5891 6268 * 4654 985 5001 5227 3620 3532 6402 * * 7
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+
+G 8 3373 * 4511 3863 * 3559 5117 * 3645 5326 6467 5030 2617 3605 4477 2558 3827 * * * 8
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+
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+
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+
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+
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+
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+
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+ 0 * * * * * * 10698 0 0
+
+C 22 4954 132 * * 6521 * 6530 6340 * * * * * * * 6517 6607 * * * 22
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+
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+
+G 26 4060 * 3252 5750 * 1784 4660 6526 5243 5671 * 3576 4232 4373 4435 3344 5225 3981 6710 * 26
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+
+Y 27 4101 5722 5287 4070 3140 3875 5495 4345 4308 4245 6759 4247 3950 4417 5547 3136 4938 5739 * 3040 27
+ 77 * 4274 * * 283 2490 10763 0 3553
+
+T 28 5135 6624 6714 4185 5045 4826 6362 5411 3504 4911 * 4078 2778 3803 4524 2766 3682 3934 * 3969 28
+ 196 5455 3259 2453 291 1879 458 10814 1328 2253
+
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+ 505 4965 1925 1750 509 1777 498 10688 1307 3631
+
+T 30 3753 * 3032 3112 * 3254 6046 * 3837 6098 * 5093 4345 4012 3801 2790 3377 5046 * * 30
+ 21 * 6107 * * 2858 214 10349 0 6228
+
+S 31 4349 * 2480 3670 6459 4750 4069 5397 4080 3522 * 3733 3767 6218 4826 4019 3612 4115 * 5915 31
+ 111 3968 6646 1338 726 193 3000 10437 1747 5800
+
+Y 32 6575 * 3794 4322 3791 4947 * 3463 5064 2897 5070 4281 2745 6787 6575 3922 3968 3580 * 4489 32
+ 199 3171 5803 302 2402 1069 934 10869 2875 1784
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+ 27 5763 * 1358 713 1335 728 10664 1166 1660
+
+M 34 5159 * * * 3459 * * 2011 5404 2564 4606 * * * * * 5168 1470 * 6598 34
+ 22 6015 * 0 * * 0 10866 1112 1333
+
+Q 35 7113 * * 3881 3562 6901 4285 5167 3672 3995 * 5942 * 3709 4011 2752 2331 5029 6561 3871 35
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+
+W 36 * * * * 4235 * * 6523 6442 5891 * * * 6598 * * * 5500 192 * 36
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+
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+L 173 * * 3731 3816 4615 4709 3624 5389 3554 2690 5560 4707 5115 4115 2857 3890 5697 5145 * 5033 173
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+H 202 6536 * 5612 6256 * * 1235 * * 6717 6097 1477 6557 5155 * 4660 5271 * * 4529 202
+ 0 * * * * 0 * 9822 0 1000
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+S 206 * * 4934 2691 * 4369 5116 * 3563 5016 * 5013 2709 3477 5879 2473 3811 4057 * 5834 206
+ 0 * * * * 3305 154 9418 0 2328
+
+T 207 2583 * 5966 3258 5916 4577 4981 5144 3769 5721 * 3995 6009 3971 5123 3058 2699 4535 * 6157 207
+ 0 * * 1000 1000 0 * 9418 1040 2185
+
+T 208 5427 * 4543 3203 5336 3495 6372 * 3971 * 6203 5280 2242 4571 3975 3614 3060 3680 * * 208
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+
+V 209 2880 5187 6244 5332 * 5144 6245 3185 3868 2405 6332 6113 * * 6053 4568 3850 2079 * * 209
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+
+K 211 3353 4482 6167 5097 6025 5013 4034 3741 3017 4222 4989 5927 * 3608 3819 4399 4093 2881 * 6322 211
+ 0 * * * * * * 9399 0 0
+
+K 212 5117 * 4451 3974 5124 5111 5733 6316 3809 * * 3563 3851 5090 4405 2530 2363 3707 * 5214 212
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+
+L 213 5955 * * * 2716 * * 1877 6175 1389 6051 * * 5964 * * 5878 3112 * * 213
+ 31 5550 * 3322 152 * * 9244 1000 0
+
+E 214 3546 * 4660 2541 * 5347 5469 * 4525 * * 2974 3895 4486 2891 3481 3235 * * 4551 214
+ 0 * * * * * * 8626 0 0
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+P 215 * * * * * * * * 3030 2328 * * 996 * 4095 4119 4034 * * * 215
+ 0 * * 0 * * * 6369 0 0
+
+//
+�HHsearch 1.5
+NAME af828e69a5f2d0fd42a2a213e09eb64f
+FAM
+FILE af828e69a5f2d0fd42a2a213e09eb64f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:17:01 2013
+LENG 141 match states, 141 columns in multiple alignment
+FILT 122 out of 1049 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHH
+HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9699999999999999986088899999999999895699876344677567988999999999999999832147889999999888852999899999
+99999999998836249999999999999999999987639
+>Consensus
+xLtxxxxxxixxsWxxixxxxxxxgxxxxxxlfxxxPxxxxxFxxxxxxxxxxxxxxhxxxxxxxlxxxixxldxxxxxxxxlxxxHxxxxgvxxxxfxx
+xxxxlxxxlxxxlgxxxxxxxxxAWxxxxxxixxxxxxxyx
+>af828e69a5f2d0fd42a2a213e09eb64f
+VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL
+LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
+>gi|83699633|gb|ABC40722.1| leghemoglobin 6 [Sesbania rostrata]
+-FTESQEALVTSSYETFKQNASDLSVLFYTFILEKAPGAKNLFSFLKDSdgvpKDNPNLKAHAAKVFELVVDSAVQLRTKGAVviaDANLGPVHV-QKGV
+TDAHFVVVKEALLKTVKEATGAKWSDELSNAWEVAYDELAAAIKKAM-
+>gi|291238614|ref|XP_002739227.1| PREDICTED: Globin D, coelomic, putative-like [Saccoglossus kowalevskii]
+-LTKEQKDTLIQTWQNLHADLERIGMLMFMGLFEHNPEIKEFFVGADsrdMKteelRYNEKLQEHGIRVMGLVEKIISSMGfedeKIDQMVVDLGKRHL-
+GYDVHIPFIDLFGRQFVFAIKPTLHTHWTANVEEAWTQLFKYIGYLMRYGYH
+>gi|50897135|dbj|BAD34601.1| hemoglobin chain I [Calyptogena kaikoi]
+-VSASDIKNVQDTWTKLYDQWeAVHASKFYNKLFKDNEDISEAFVKAGT-GSGIAMKRQALVFGAILQEFVENLSDPTALSLKIKGLcatHK-TRGItNM
+ELFAFALADLVAYMGTT--ISFTAAQKTSWTAVNDVILHQMSSY--
+>gi|255724342|ref|XP_002547100.1| predicted protein [Candida tropicalis MYA-3404]gi|240134991|gb|EER34545.1| predicted protein [Candida tropicalis MYA-3404]
+-LSPFEIDQIQSSWNRIS-NKNNFYNELYLNLIEKNPNLGEIFNHDE-----SVITHHAKTFGDCFNFVVSNIENVEIIeefiYSFVQENQR-FSQMSTK
+YLEPMGNSLILTLKQFLRSYSTSVLELTWVKVYVYFANSI-----
+>gi|311279880|ref|YP_003942111.1| hypothetical protein Entcl_2577 [Enterobacter cloacae SCF1]gi|308749075|gb|ADO48827.1| hypothetical protein Entcl_2577 [Enterobacter cloacae SCF1]
+-------ELFNNSYARILPgdKGDRFFTHFYTLFTKSTDDETSAH------------svarrLEKQKIiyktf-FYmlsvanth-------IVA---DYL
+VKITRESNpQNLNLPPSAYALWRRAVLQTVRDLD-PECDEEIITAWAIVLAPGLEFMRR---
+>gi|159461074|gb|ABW96608.1| hemoglobin F2 [Fasciola hepatica]
+-LTQTQIDSiLADLAHHTDttEHITEMGVSIYKTLFAAHPEYISYFSKLqGLTKdnvgQSEGIRYYGRTLGEELIRLLKAASNPsvlEERIVQGAKDHK-
+ARPVTKDQFTGAAPIFIKFFQGLL---KKQEDKDAIEKFLLHVMQAIAAK--
+>gi|237756266|ref|ZP_04584824.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5]gi|237691567|gb|EEP60617.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5]
+-FTQEDVERIKKLKPILEKYLDEFISKFYFFIS-RFPDYNQFLKN-------EDlFKRHKSELKNWFLDLFsGNYDENYfSRLYKIGEVHV-NIGLPTHY
+VNAafnfVRRFIIEKIDAEIQDRNErNLYVTSIGKLIDINLDVLTLAYR
+>gi|324521693|gb|ADY47909.1| Unknown [Ascaris suum]
+--------RIQQCFKAA---RPPIGQQILKRACILRSEMRLFLAHLP----DDMVDELAIDLYTFISNCVENIDDPDRVNALARAFgeqHAalCSLGFRP
+DYFAPIADAAIAECVRLDGgAHKRCETLLAWSQLIAAMFTGVRDGY-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 * 4317 4489 * * 4524 3412 * * * * * 1330 * * 2340 4659 2910 * * 1
+ 54 4766 * 3702 115 * * 6177 1162 0
+
+L 2 * * * * 4095 6278 * 3378 * 669 3672 * * * * * 6481 3838 4512 * 2
+ 0 * * * * * * 8702 0 0
+
+S 3 5928 * 3965 6628 * * 6750 * 5653 * * 3721 6515 * 5273 1444 1322 * * * 3
+ 0 * * * * * * 8769 0 0
+
+P 4 2603 6496 3224 2675 * 4046 5589 5594 4994 5835 5357 5208 3326 4268 4426 3438 5096 5991 * 5444 4
+ 0 * * * * * * 8878 0 0
+
+A 5 2667 * 3799 2445 6535 4683 6922 4089 3025 * * 4983 5813 4464 3954 2861 * 6337 6411 5235 5
+ 0 * * * * * * 8902 0 0
+
+D 6 5926 * 1860 2102 * * 5661 6612 6672 6649 5931 5123 * 1605 * 5823 4879 * * * 6
+ 0 * * * * * * 8951 0 0
+
+K 7 4971 6730 * 4213 6361 * 5232 2445 2133 3449 5887 * * 4488 2594 * 6624 3207 5855 * 7
+ 0 * * * * * * 9059 0 0
+
+T 8 2896 * 3360 2879 4960 6171 5604 4737 2711 5651 * 5734 * 3073 3980 4062 4984 5695 * 4510 8
+ 15 * 6614 * * * * 9168 0 0
+
+N 9 2612 * 4861 4696 * 6859 6259 3047 4803 1818 6902 3669 * 5643 6306 6660 3622 3626 * 6717 9
+ 33 5480 * 358 2185 0 * 9276 1385 1017
+
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+
+K 11 4881 * 5552 4985 5697 5379 5404 5912 2476 3720 6973 4074 * 2724 1974 6701 4556 4570 * 7238 11
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+
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+
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+
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+
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+
+K 16 3358 * 6046 5515 5744 5226 5170 3505 2844 3352 6733 4491 4552 4490 3088 4500 3816 3535 * 7158 16
+ 27 6635 6859 1000 1000 * 0 9283 1022 1000
+
+V 17 3444 5181 * 6069 4552 7030 * 2260 * 1995 3942 6560 6930 6234 6562 6660 5743 2189 * * 17
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+
+G 18 3268 6613 4827 3656 4009 4774 5276 5866 2489 4598 4732 6660 6103 5106 3595 3134 4181 5611 5233 5611 18
+ 161 3932 4649 659 1447 2337 318 9183 1962 2418
+
+A 19 2300 6409 3323 4664 * 3935 6647 * 2774 5401 6090 * 3124 3318 4085 3552 5882 * * 6671 19
+ 63 4861 6965 796 1238 177 3116 9126 1382 2764
+
+H 20 4378 6568 2524 3915 6575 4312 3801 5299 3489 5187 * 2256 5758 4907 3952 4979 6907 5714 6145 5171 20
+ 51 5746 5972 1412 680 818 1209 9253 1162 1263
+
+A 21 4101 6819 4991 4572 5807 3017 5624 4869 2861 3016 4877 4392 4304 4894 4651 3654 * 4334 5066 4729 21
+ 180 3195 6956 2346 316 700 1379 9280 2704 1315
+
+G 22 3634 * 2936 2631 6735 4642 5576 5313 4202 5045 6056 4147 3453 3510 4897 4444 4603 3880 * 6957 22
+ 51 4845 * 1573 591 700 1379 9292 1464 1316
+
+E 23 2744 * 3680 2180 * 3840 4395 * 4801 5357 6868 4536 5223 3532 3947 3940 4493 4832 * * 23
+ 20 6158 * 2695 242 0 * 9292 1116 1022
+
+Y 24 3430 5366 7198 * 1892 * 3721 3181 7083 3282 5495 3940 5914 6746 * 6942 4296 3423 6588 4854 24
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+
+G 25 2553 5232 * 7083 4664 1038 6588 5699 * 4688 * * 7198 * * 4814 4044 3355 * * 25
+ 14 6746 * 3700 115 * * 9292 1014 0
+
+A 26 4129 6580 3305 3927 6615 5106 7109 4563 4564 4189 5295 5035 4376 3817 3533 3081 3149 3642 * 7151 26
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+
+E 27 3058 6602 3410 3410 5877 4985 4941 3987 2839 4024 6941 4026 * 4685 3994 4731 3782 4542 * 6436 27
+ 20 * 6151 * * * * 9292 0 0
+
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+ 0 * * * * * 0 9239 0 1154
+
+L 29 6562 * * * 1399 * 5631 * * 2714 4267 * * * * 5979 6050 6605 * 1537 29
+ 0 * * * * * 0 9239 0 1154
+
+E 30 3561 7007 3668 3450 6565 4696 5514 3161 3572 3373 5385 5269 6703 4649 4017 3714 3646 4624 * 5942 30
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+
+R 31 4086 5477 6055 4885 5979 5159 4533 5966 2451 4245 7131 3332 * 5750 1760 6007 5022 6792 5696 4784 31
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+
+M 32 6317 6473 * * 2456 * * 3484 * 1103 3761 * * * * * * 4949 4558 3469 32
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+
+F 33 4996 * * * 739 * * 4392 * 2376 4688 * * 5193 * * 6559 4558 6651 * 33
+ 61 * 4604 * * * 0 9248 0 1154
+
+L 34 3599 * 4547 2332 * * 6668 6423 2415 4973 5919 3899 * 3530 4368 3460 3313 5308 * * 34
+ 0 * * * * 473 1838 9067 0 1930
+
+S 35 2762 6943 3977 3260 * 6947 4184 7185 2884 3622 4791 5027 * 4160 3355 3664 3809 6476 * 6991 35
+ 10 * 7222 * * * 0 9250 0 1154
+
+F 36 3707 5620 3187 4923 3052 * 2941 6608 3797 6114 7263 2828 * 6876 3745 4410 5391 5937 * 3392 36
+ 0 * * * * 1680 540 9254 0 1296
+
+P 37 5043 * 4685 4570 5986 6017 7091 6526 * 6808 * * 460 5650 5792 4618 5811 7185 * * 37
+ 0 * * * * * 0 9250 0 1154
+
+T 38 3838 * 2287 1800 * 4654 4856 * 5238 5685 6821 5176 * 3730 4184 3625 5483 5339 6476 6431 38
+ 0 * * * * * 0 9250 0 1154
+
+T 39 3172 7040 6564 6564 3982 6931 5960 3171 * 2560 4071 5176 * * * 3722 2942 3319 6733 3481 39
+ 0 * * * * * 0 9250 0 1154
+
+K 40 4114 * * 4391 * 6052 5261 4455 1987 3316 * 6526 5986 2547 2353 5831 5790 5775 * 6987 40
+ 0 * * * * * 0 9250 0 1154
+
+T 41 3016 6274 3279 3271 * 6431 5980 6244 3375 5545 * 3028 3630 4623 4124 3649 3461 5986 * 6526 41
+ 0 * * * * * 0 9250 0 1154
+
+Y 42 3938 * * * 3446 * 4962 3618 3135 2319 2790 * 5179 7244 5894 6943 5986 4209 * 2820 42
+ 16 * 6526 * * 0 * 9250 0 1154
+
+F 43 * * * * 226 * 6509 5252 * 4391 * * * * * * * * 5720 4595 43
+ 16 * 6510 * * * 0 9315 0 1046
+
+P 44 4789 * 3921 4855 * 3389 4152 * 2952 * * 3917 2139 6893 4947 3126 3830 4499 * 5708 44
+ 128 * 3559 * * * 0 9253 0 1269
+
+H 45 4598 * 3667 3655 4289 3455 4890 5914 2665 5216 5295 5130 5990 4405 2922 3873 4252 4925 6732 6446 45
+ 453 4867 2087 794 1240 1135 876 9229 1386 2742
+
+F 46 4045 * 5331 6037 1313 * 6823 4481 6323 3011 4391 * * 6574 4956 4329 4215 3999 6217 4761 46
+ 1080 1231 3305 182 3077 * 0 8802 5415 5058
+
+D 47 4694 * 1723 4743 * 2971 4742 * 3055 5329 * 2797 * * 4561 4080 3930 * * * 47
+ 355 3238 3160 314 2353 * 0 8524 2184 5784
+
+L 48 4477 * 4177 6470 4508 3627 6172 3565 4087 1945 5321 6171 * * * 6362 4716 2114 * 5229 48
+ 298 2560 5899 1132 879 4154 83 8234 2783 6402
+
+S 49 4573 * 3174 4396 * 5131 5044 * 3096 5035 * 3518 2220 5077 6109 2892 3604 6070 * 6009 49
+ 1426 671 * 2018 409 4006 93 8227 6059 6284
+
+H 50 3186 5771 3920 4110 6232 5983 5308 4640 2819 4116 4840 * 2632 6005 3448 3493 4372 6216 * * 50
+ 385 2093 * 2245 342 3840 104 8352 3328 6067
+
+G 51 3032 * 3215 4367 * 3910 5265 * 3533 * * 3306 * 3999 5216 2680 2922 5374 5934 5399 51
+ 0 * * * * 4843 51 8435 0 5826
+
+S 52 5256 6694 3158 5782 * 4721 4643 5228 * 6477 * 1570 6159 * * 1696 4088 * * * 52
+ 22 6034 * 0 * 1078 926 8488 1028 5709
+
+A 53 2849 * 4264 3109 6342 4143 5834 6408 4044 4566 6530 4283 1783 6773 5239 4327 4534 6544 * * 53
+ 50 * 4871 * * 150 3342 9002 0 3844
+
+Q 54 3587 * 2275 3006 7150 3872 6877 5234 3202 6096 * 4160 5948 4187 3574 4242 4249 5283 * 6651 54
+ 38 5269 * 0 * * 0 9244 1371 1692
+
+V 55 5411 * 6125 6626 1691 6867 * 3644 6906 2108 2801 * * 7112 6645 6550 6006 3375 * 5043 55
+ 0 * * 2322 322 728 1336 9244 1062 1692
+
+K 56 3420 6600 4336 3122 * 5678 4281 5444 2420 3836 * 4682 * 3577 2701 3700 5787 * * 6717 56
+ 0 * * * * 797 1237 9290 0 1184
+
+G 57 2475 6332 5066 3346 5921 3707 4419 6614 3296 4233 * 4093 * 4601 2888 4203 5186 6037 6979 4852 57
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+
+H 58 6959 6143 * * * * 1155 5779 5529 3738 6495 * * 1627 5525 5949 * 6283 * 5140 58
+ 24 * 5893 * * * 0 9294 0 1276
+
+G 59 1878 4622 * 5939 6125 2629 7078 5379 3976 5359 6558 6038 5200 5344 4714 3132 4248 3423 * * 59
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+
+K 60 3726 5692 5097 3239 6517 4534 7247 3574 3355 3194 4902 5797 * 4730 3235 4930 3530 3641 * 5412 60
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+
+K 61 4202 * * * 6785 7000 4943 4055 2827 3934 3817 4797 * 3673 2344 4203 3142 3831 * 6685 61
+ 60 4615 * 2085 388 * 0 9303 1683 1000
+
+V 62 * 5300 * * 2061 * * 2184 * 2336 5574 * * * * 6607 * 1917 * 5581 62
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+
+D 64 3866 6532 3320 3063 * 3990 5201 * 3504 5902 4461 3151 * 3798 4103 3258 3557 * 6675 5760 64
+ 15 6588 * 3000 193 0 * 9303 1062 1000
+
+A 65 2330 4795 * 6757 4715 3352 * 3994 5940 3174 4733 * * 6007 4348 2961 3518 3975 4724 6574 65
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+
+L 66 * * * * 3539 * * 2499 * 1122 4726 * * * * * 6919 2296 * 5173 66
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+
+T 67 4220 5829 2061 3091 * 3242 5406 5482 5765 5083 6637 3177 * 4258 5585 4016 3845 5012 * 5958 67
+ 0 * * * * * 0 9280 0 1062
+
+N 68 3707 5885 3375 3084 3779 6916 5466 5113 3292 4581 7147 3902 6300 5899 4491 4066 3631 4892 5504 3803 68
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+A 69 2454 4601 * * 3653 4389 * 2148 * 2811 4386 * * * * 5415 4407 2781 6757 7013 69
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+V 70 4111 5757 * 6828 4576 * * 1626 * 3032 3866 * * * 6637 * * 1581 * 6190 70
+ 79 4237 * 0 * * 0 9280 1930 1062
+
+A 71 4288 6906 2975 3174 * 3061 6890 6971 3049 4289 6638 3703 5307 4052 4152 3491 4482 4970 * * 71
+ 63 4543 * 1362 711 0 * 9280 1643 1062
+
+H 72 2996 5510 * 5075 5309 4273 3407 5009 3992 4455 5214 2411 5496 4814 4637 3140 6664 4552 * 4897 72
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+
+V 73 4216 5920 4999 6135 4593 * 6167 3725 5530 1087 3686 6849 5919 * 6624 * 6902 3352 * 4589 73
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+
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+D 75 5882 * 1617 3201 5364 4874 4188 * 3530 * 6731 2400 6855 4948 4626 4722 5462 7076 * * 75
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+M 76 3443 6867 4710 3896 5786 4437 4981 4331 4287 2272 5059 5733 2585 5418 4846 4499 5839 4500 * 6565 76
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+
+P 77 4447 6496 2517 2484 7172 3772 5811 6844 3558 4671 5641 6159 4600 4340 4392 3338 5347 5626 * 4547 77
+ 162 3237 * 940 1062 276 2522 9222 2759 1752
+
+N 78 3640 * 4791 2836 6883 4105 6778 5175 3266 3565 6186 4348 6840 4263 4848 3278 3329 3778 * 5806 78
+ 100 4013 7593 1031 970 0 * 9330 2062 1000
+
+A 79 4517 * * 5750 3398 4906 5908 3326 4250 1879 4047 6966 5086 5335 6005 5339 4658 3064 * 4423 79
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+
+L 80 4257 4044 5502 5399 4131 * 6902 3534 4573 1710 4610 5843 * 6864 4891 5145 * 2560 5961 5187 80
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+S 81 2843 6111 4033 4397 * * 4998 4349 2768 4164 5305 5260 3356 3896 3881 3871 3939 4755 * * 81
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+
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+
+L 86 6767 * 6954 4750 4321 * 6537 3854 3811 1578 5742 4371 6860 6772 3096 3902 4100 3794 * 6598 86
+ 494 1786 * 1529 614 0 * 9311 5150 1096
+
+H 87 5874 * * 6490 * 4271 302 * 5316 * * 6060 6969 6724 6557 6591 * * * 5044 87
+ 50 6788 5316 1000 1000 * * 9305 1014 0
+
+A 88 2517 6027 5196 5342 * 5378 4623 4874 3187 3629 * 5749 * 4730 2865 4024 4231 2927 6693 5692 88
+ 2384 2859 576 708 1367 0 * 9272 3209 1306
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+H 89 4359 5056 4105 3058 4063 * 5376 * 3335 * 4469 4413 5359 2938 2843 * 2730 5444 * * 89
+ 165 3208 * 1260 780 0 * 7838 1450 7934
+
+K 90 3028 6922 4197 4876 5820 3250 4133 6985 2217 7017 7199 3576 4344 4790 3776 4570 4452 5312 * 6940 90
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+
+L 91 4254 * 7176 6347 3548 * 5323 4468 4984 2951 4226 7017 5797 6063 2134 5551 * 4798 6676 2166 91
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+
+R 92 7236 6902 4927 * * 1006 6042 6557 3718 6624 * 3070 4409 5539 3713 3865 * 6673 * * 92
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+
+V 93 4030 6167 * 6490 3826 6702 * 1976 * 3229 4332 * 5628 5390 * * * 1399 * * 93
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+
+D 94 4673 6607 3722 4187 * 3347 4404 * 3086 5999 7170 3581 3517 5077 4056 4281 2344 6014 * 6715 94
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+
+P 95 3132 * 4327 5309 6607 4481 4781 4148 4159 4421 6066 7227 1768 3987 3833 3918 6715 4784 * * 95
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+
+V 96 3403 * 2896 1975 7179 4381 4077 6097 3311 5419 * * 5403 3796 4452 4215 4850 5368 * 6670 96
+ 0 * * * * * 0 9294 0 1013
+
+N 97 4708 * 3226 5427 5944 * 2000 6295 * 3847 4493 6169 * 3234 5813 5311 7222 5903 5903 2087 97
+ 0 * * 0 * 0 * 9294 1013 1013
+
+F 98 6622 * * * 1294 * * 3755 * 2646 5618 * 6490 * * * 6770 4110 3387 2699 98
+ 0 * * * * * * 9305 0 0
+
+K 99 3221 * 2391 2731 * 4310 * 5632 3321 5187 6961 3512 4650 3780 5179 5356 4800 5880 5229 6200 99
+ 15 6642 * 2322 322 * * 9330 1017 0
+
+L 100 3031 * 3357 4153 5857 5468 5337 3907 4417 2873 5343 3936 3803 4730 5978 4579 3995 3568 * 7585 100
+ 77 4263 * 2000 415 * * 9330 1930 0
+
+L 101 4244 * * * 2029 6974 * 3231 * 1949 2951 * * * * 6298 * 2842 4406 * 101
+ 15 * 6583 * * * * 9330 0 0
+
+S 102 3584 5556 * 4058 5891 1925 * 5359 3524 3858 * * 6183 4420 2868 3073 7024 4928 6654 6951 102
+ 0 * * * * * 0 9315 0 1028
+
+H 103 3641 * 3105 2059 * 4535 6128 6682 5283 6759 * 4194 4064 4389 3229 3133 4588 5535 6910 7099 103
+ 0 * * * * * 0 9315 0 1028
+
+C 104 1715 3904 6670 * 5247 6668 * 3053 * 4730 6280 7144 4525 5169 * 2935 6261 2707 6060 5551 104
+ 0 * * * * * 0 9315 0 1028
+
+L 105 5629 6336 * * 2144 * * 2949 * 1171 4659 * * * * * 6487 3741 5295 5907 105
+ 0 * * * * 0 * 9315 0 1028
+
+L 106 4875 7010 5720 5505 6678 7160 4954 2707 5521 1667 4144 * 5525 4778 5110 * 4398 2660 6670 5696 106
+ 0 * * * * * * 9330 0 0
+
+V 107 2825 5656 3085 2840 4529 4457 4998 6773 3764 5056 6949 6716 5599 4048 4245 4131 3660 5152 5990 5874 107
+ 0 * * * * * * 9302 0 0
+
+T 108 2195 6842 * 5589 4229 5863 5792 5564 5102 4629 4423 * * * 6331 5219 1878 2634 * 4214 108
+ 0 * * * * * * 9302 0 0
+
+L 109 4563 6302 * * 2845 * * 2533 * 1412 3211 * * * * * * 2744 * * 109
+ 43 6331 5865 1585 585 * * 9302 1104 0
+
+A 110 3615 5283 5384 2771 5160 4395 5805 6156 2954 * * 5374 5100 3093 2606 3443 4738 5525 * * 110
+ 12 * 6916 * * 1039 962 9278 0 1157
+
+A 111 3318 6597 3206 1880 * 5735 4554 * 3453 * * 4548 5770 2874 6025 3853 4391 5962 * 6510 111
+ 38 5271 * 1405 684 0 * 9284 1315 1147
+
+H 112 3092 4414 * 3950 6891 5170 3527 4619 3924 3455 5961 5052 * 4961 4063 5110 4156 2804 4800 4377 112
+ 100 * 3900 * * * * 9302 0 0
+
+L 113 5416 4418 3958 * 4173 5696 5799 4218 6267 1146 4120 5154 * 5321 * 5563 5781 3680 6842 5846 113
+ 265 * 2573 * * 1951 432 9256 0 2053
+
+P 114 5156 * 6361 4246 * 766 6656 * 3743 * * 6354 3010 4318 * 4739 * 6576 * * 114
+ 124 5012 4275 722 1344 918 1087 8974 1315 4183
+
+A 115 3415 * 2610 4004 * 3837 * 6458 3506 6647 * 3642 3318 5408 3971 3367 3938 4700 5841 6062 115
+ 17 6430 * 0 * 567 1622 9157 1013 3218
+
+E 116 3275 5246 2832 3087 * 3360 4023 * 3097 * * 4876 6328 3878 3439 3391 5759 7114 * 6834 116
+ 184 3321 5675 896 1113 538 1685 9227 2691 1850
+
+F 117 4404 5229 * * 1865 * 6146 3960 4835 3251 4859 6843 5466 * 5733 5750 * 4981 2353 3286 117
+ 19 6279 * 4907 49 * 0 9253 1104 1497
+
+T 118 5470 * 2324 6788 6801 5489 4860 * 5813 * * 2901 7246 5069 4936 2734 1627 6925 * * 118
+ 146 3778 5436 750 1302 961 1040 9253 2220 1497
+
+P 119 2619 6228 2432 3314 6463 4709 5662 5692 4042 6741 6521 4942 3390 3814 4573 4050 4078 7008 * * 119
+ 47 * 4952 * * 2408 301 9279 0 1587
+
+A 120 3491 * 2716 1703 * 4363 6609 5452 3843 * * 5202 6927 3684 5139 3243 5108 5367 * * 120
+ 0 * * * * * 0 9247 0 1993
+
+V 121 3007 6493 5137 4215 5899 * 6756 2988 * 2794 4948 6187 * 3826 * 4713 2653 2702 * 5744 121
+ 0 * * * * 1533 612 9247 0 1993
+
+H 122 3569 * 4083 2130 6138 5250 5986 4651 3001 3767 5149 * 5773 4147 3471 5940 4634 3571 * * 122
+ 0 * * * * 0 * 9255 0 1609
+
+A 123 2765 * 2944 2519 * 4045 6910 6828 3894 5590 4899 3988 * 5008 3933 3433 4201 4547 * * 123
+ 11 7083 * 1585 585 * * 9295 1000 0
+
+S 124 685 * * 5879 * 5736 * 4878 * 4541 6040 * 7091 6908 6841 3641 4122 3648 6897 * 124
+ 12 6936 * 3000 193 * * 9295 1007 0
+
+L 125 5103 * 6902 * 4079 * * * * 4359 5594 * * * * * * 5482 405 4154 125
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+D 126 3776 * 3152 3644 * 4972 4587 4863 2983 4901 5598 3793 * 5395 2668 3864 3474 5344 6711 * 126
+ 0 * * * * * * 9295 0 0
+
+K 127 4100 * 4145 4040 6889 4588 5617 4013 1719 5573 5833 5822 * 3705 3551 4191 4434 3857 * * 127
+ 0 * * * * * * 9281 0 0
+
+F 128 2149 4304 * * 3469 5294 * 3955 * 1921 4142 * * * * 6161 3749 2999 * 6720 128
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+
+L 129 6539 * * * 2008 6636 * 3206 * 1932 3733 6674 * * * 6655 5390 3979 4947 2781 129
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+
+A 130 3625 * 2501 4444 * 3350 * * 3303 5782 6985 4268 6520 4162 3371 2798 3845 4887 6886 * 130
+ 13 * 6834 * * * * 9281 0 0
+
+S 131 3894 * 5996 4327 2395 6137 5128 3523 6839 3128 5998 5332 5058 6887 4302 4904 5648 2918 * 3197 131
+ 0 * * * * * 0 9238 0 1021
+
+V 132 5189 5875 * * 3525 5029 * 1600 * 2489 4488 6287 * * * 4771 5104 2324 7109 * 132
+ 0 * * 1585 585 0 * 9221 1021 1021
+
+S 133 2265 3966 6814 5075 4820 3953 * 2946 6619 2930 6093 5305 * 5237 6907 4195 4063 3494 * 4635 133
+ 0 * * * * * * 9189 0 0
+
+T 134 2909 6481 2146 3716 * 3915 5617 5816 3404 7009 * 3195 6814 4607 5944 3753 3854 6212 * 6076 134
+ 13 6809 * 1000 1000 * * 9189 1000 0
+
+V 135 3353 5467 5852 6776 5535 4029 5098 3198 4910 3302 4875 5868 6375 4317 3710 4690 3620 2845 * 4370 135
+ 0 * * * * * * 9098 0 0
+
+L 136 6436 * * * 4350 * 6711 1781 * 1611 1853 * * * * * * 4845 * * 136
+ 0 * * * * * * 9009 0 0
+
+T 137 3327 6309 4852 5333 5432 3753 * 3088 2642 3805 6276 6566 6296 4919 3313 3208 4713 3931 * * 137
+ 0 * * * * * * 8801 0 0
+
+S 138 3418 * 4805 2988 5191 4581 3873 4664 4311 4580 * 6331 5725 3621 4107 2135 5152 5003 * 5803 138
+ 0 * * * * * * 8512 0 0
+
+K 139 2789 * * 4151 * 1669 * * 3121 4246 5170 * * 4125 5359 3173 4648 * * 4144 139
+ 0 * * * * * * 8000 0 0
+
+Y 140 * 4668 * * 4735 * * * * 4848 3901 * * 4618 * * * 5331 4551 488 140
+ 0 * * * * * * 7277 0 0
+
+R 141 * * * * * * 3200 * 1309 * * * * * 1863 * * 3435 * 3058 141
+ 0 * * 0 * * * 4773 0 0
+
+//
+�HHsearch 1.5
+NAME b056b4c4d9017a19c3095e4c72f67a47
+FAM
+FILE b056b4c4d9017a19c3095e4c72f67a47
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:52:42 2013
+LENG 194 match states, 194 columns in multiple alignment
+FILT 116 out of 1318 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
+CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9988557999997988887179999999999999852668978999998892279876777668999999998450579997399999999999875540
+4778996299998379988980559999999987899899999588433435899999997288986499749999999999999998513388
+>Consensus
+CxxxxxdivxllDxSxSmxxxxxxxxkxxxxxxxxxxxxxxxxvxlvxfxxxxxxxxxlxxxxxxxxxxxxixxxxxxxgxtxxxxalxxaxxxxxxxxx
+xxrxxxxxxiiliTDGxxxxxxxxxxxxxxxxxxxxixvxxigxgxxxxxxxxxxxlxxiaxxxxxxxxxxxxxxxxlxxxxxxixxxicxxxx
+>b056b4c4d9017a19c3095e4c72f67a47
+CPQEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITN
+GARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFCIGS
+>gi|260837234|ref|XP_002613610.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]gi|229298996|gb|EEN69619.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]
+--------LYPYGSySGGYPPSNMEKTMG-PGNYRVPLVagGETITIGSIKKTEETSPseslsaekQAVVAAQDTRECTMSSITiySEERLRGTKKTYSG
+NGWLPRDPSWV-----VDSAGPAWVDSNGVTWEDV--------------VTVDNVQSGDQ------RQVFGGFQGKARYWKLVITQTYTGWQPYVRE---
+-------
+>gi|317505805|ref|ZP_07963650.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]gi|316255887|gb|EFV15112.1| von Willebrand factor type A domain-containing protein [Segniliparus rugosus ATCC BAA-974]
+-AKNQATVILLLDISESMRAtdvkpSRVEAARAAAIKFVDGM-APTVQLGVVTFAGNAQPLVRPSTD--HETAKKVIDQMIrpdKLEKQTATGEGIYTAL
+QQIEtiAGalGGKNHA-PPARIVLVSDGKETVpdDLNAPrgaYAAARTAKEKHVPVCTVAFGTKAGKitldnqvdevPVDLESLKKISDLSNSPgnscRF
+FPAESQGELAQIYQSLNEDI-----
+>gi|82913384|ref|XP_728622.1| micronemal protein WARP [Plasmodium yoelii yoelii str. 17XNL]gi|23485067|gb|EAA20187.1| micronemal protein WARP [Plasmodium yoelii yoelii]
+C-DNYYDITLIVENSSFIQKDYWMKgTIPFLESMVRNARvsKDKAHMAIILFAGRQDLIVPFTDELSQdkEKLIDKIRTLNDAATDsnTLYVYALEYAFE
+KVIFGE-GTRSDAPKVAVLFYYGFDYgSNTSLIPDVVEDYKQNNIKLIIVGIALG-----NKQNAFILADCKSDGDCPNLilEPWDYVIRAAEQVKGKIC
+N---
+>gi|149173297|ref|ZP_01851928.1| hypothetical protein PM8797T_28944 [Planctomyces maris DSM 8797]gi|148848103|gb|EDL62435.1| hypothetical protein PM8797T_28944 [Planctomyces maris DSM 8797]
+-------LAIILHTCEFPEGNTWGKRIT-----KQAIKvlGAQDEVGVLVYdfMDGEKWLFKLMPAGDYEKMVPKINGAQ-IGDMPSFANTMQLGLNGLI
+KSDA-----STKHMIIISDGDPQ-PPT--PQLIGQFLKNKVSVSMVAIfphGGE-----DISKMRDIAGVTGGR-YYFPSDPNQLPSIF-----------
+-
+>gi|171684709|ref|XP_001907296.1| hypothetical protein [Podospora anserina S mat+]gi|170942315|emb|CAP67967.1| unnamed protein product [Podospora anserina S mat+]
+-PSSKPEIVFVCDRSGSMGdGKRIPNLQTALHLFLKSL-PLGVKFNICSFGSHWDFMFpEGSRTYDASSLAHATQYVNSISanyGGTEMRMPLQDTFKR-
+------RYKDMDLEVFMLTDGEIWDQQQVFGMINTHVAESegAIRVFSLGIGNDV----SHALIEGIAQAGNGFSQSVADDESMNSKVIRMLKASL----
+-
+>gi|212634224|ref|YP_002310749.1| TPR domain-containing protein [Shewanella piezotolerans WP3]gi|212555708|gb|ACJ28162.1| TPR repeat protein [Shewanella piezotolerans WP3]
+-------LVIALDLSPSMQERQhgiehLTRAKLAITTLLQQ--GSARPISLVAFSGSSHQVLPASEQLALlTLYLGYLSPDIMPVEGDDIDSLVSVISAM
+P------ETEEFGVDLLIFSDGFtGGSELSSLVDRLKA----QVVFAALTt--EAE----EVARKFGYAVISSGSLIETP--DRLLAKVASLEKR-----
+--
+>gi|119486146|ref|ZP_01620206.1| von Willebrand factor, type A [Lyngbya sp. PCC 8106]gi|119456637|gb|EAW37766.1| von Willebrand factor, type A [Lyngbya sp. PCC 8106]
+------SYTIVIARSGVSRD-qHhpwfneWIDAQASLIDLAKKCQeFDPEGLTIYEASSY------LKKYPKAtVSRFADLLQ-ENNrscvtnIIDINVV
+EAVADILNHYFERKENHQtkp-KG-EIIVVVLDKHGI-D-giGDLQQLIIKSshqmdyaEELGITFIQVG------------------------------
+---------------------
+>gi|227498725|ref|ZP_03928867.1| conserved hypothetical protein [Acidaminococcus sp. D21]gi|226904179|gb|EEH90097.1| conserved hypothetical protein [Acidaminococcus sp. D21]
+---------IMLDASASRG-EYQRVIAAQAYVIAEALRACGIPYQIYSFCTlrGYTVMTLYQSYEEKKKSTSVFS--YCATGWNRDGLALRGARVLM---
+---GDlTDAKKILVMLTDASPNDDHPlytgkgalsqheyrderavdDTAAEAASLRRDGVRIVGLINDEIA----GSmEDAQKIFG----KDLVRVKTLD
+KMAESVGKALCHQ-----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+C 1 * 0 * * * * * * * * * * * * * * * * * * 1
+ 639 4263 1710 0 * * * 6636 1009 0
+
+P 2 4708 * * 4795 4856 * * 3785 4920 * * 4903 1731 3273 3520 3371 2947 4879 * * 2
+ 44 * 5047 * * 0 * 7806 0 1988
+
+Q 3 * * 2844 3107 5430 4374 4585 * 3469 5424 * 4006 5533 3456 3848 3054 3264 4351 * * 3
+ 40 * 5195 * * 0 * 8697 0 1000
+
+E 4 3240 5840 6033 3154 * 2206 * * 3363 4827 5809 4288 5735 2909 3850 5388 4263 5908 * 5881 4
+ 0 * * * * * 0 9090 0 1055
+
+D 5 3653 * 4595 4088 * 3632 4264 5897 3198 4576 6376 4977 2364 3630 5394 3876 4532 6267 6227 4659 5
+ 19 6224 * 1000 1000 0 * 9446 1000 1055
+
+S 6 2983 * * * 3995 6153 6571 2764 5349 2397 3791 * 6156 5340 4330 6462 3799 2573 * 6301 6
+ 0 * * * * * * 9583 0 0
+
+D 7 4896 * 643 3845 * 5335 4848 * 6559 * * 4533 6407 6540 4683 4874 5343 6463 * 6434 7
+ 0 * * * * * * 9704 0 0
+
+I 8 5473 6667 * * 5145 * * 1652 * 2073 4406 * * * * * 4534 1879 * 5547 8
+ 0 * * * * * * 10083 0 0
+
+A 9 3029 6820 * * 5076 5664 6766 2869 * 3161 5225 * * * * 5711 3930 1429 6842 3838 9
+ 0 * * * * * * 10185 0 0
+
+F 10 5926 * * * 1449 6882 * 2381 * 1879 6979 * * * * 6223 5697 3693 6441 6011 10
+ 0 * * * * * * 10236 0 0
+
+L 11 2866 5040 * * * * * 2758 * 1442 6622 6767 6011 * * 6223 6772 1949 * * 11
+ 0 * * * * * * 10236 0 0
+
+I 12 5804 6803 * * 4120 6640 * 1972 * 1616 4550 * * * 6628 6608 6924 2214 6223 5375 12
+ 0 * * * * * * 10236 0 0
+
+D 13 6750 * 352 4000 * 5417 5320 * * * 6643 5092 * 5282 * 5814 6226 * * * 13
+ 0 * * * * * * 10245 0 0
+
+G 14 3145 5864 4185 4446 6711 3902 6713 3796 5118 5865 5151 4889 6916 4873 4519 2892 2815 3105 * 5375 14
+ 36 6022 6734 0 * * * 10245 1149 0
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+
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+
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+
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+
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+ 108 4646 4949 4322 74 4074 88 8075 1044 8850
+
+E 151 2926 * 4468 3044 4783 4146 * 4871 5063 3367 * 5109 4008 3419 4121 4179 3008 5237 * * 151
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+K 152 2864 5328 5304 5146 5146 3469 * 3136 4077 * * 3543 * 3585 5188 4354 3395 3043 * 5020 152
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+R 154 3734 * 5110 2902 5675 5802 5554 5575 3639 3015 4422 5675 4500 4564 2810 4946 4066 4211 5144 6848 154
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+
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+
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+ 112 * 3740 * * 796 1238 9552 0 5745
+
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+
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+ 0 * * * * 565 1626 9916 0 3441
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+ 318 3094 3632 361 2174 0 * 10071 2770 1744
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+H 168 4022 4630 3778 5576 4085 5455 2737 6203 4358 5060 4960 3207 4405 4903 4729 4944 4115 4946 6788 3476 168
+ 18 6321 * 2000 415 0 * 10106 1017 2191
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+
+T 180 3700 * 2765 3107 * 4400 * 4935 3283 4497 6599 3232 4653 4488 4114 3558 4333 5058 * 6715 180
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+
+I 181 3781 6726 * 5416 3206 * 6281 2112 5485 2684 3926 6392 * 5120 4405 4609 4982 3493 6704 4672 181
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+Q 182 3513 * 5397 5422 2812 * 6479 2558 5524 2306 6400 * 6603 5118 5619 * 6442 2390 * 4494 182
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+L 185 6340 6567 * * 3357 6563 * 1683 * 1854 3641 * * 6373 * 6118 6508 2614 * * 185
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+R 186 2794 6299 6191 6225 4622 * * 2611 5212 2656 3967 5279 6179 3652 4696 4294 4668 3325 * 6121 186
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+
+E 187 5128 * 2640 2917 6130 3846 5256 * 3270 6047 6265 3708 * 3066 3331 4356 4258 5198 * 6236 187
+ 51 4837 * 2484 284 * * 9711 1290 0
+
+K 188 3898 6035 5177 3139 6430 4170 * 6010 2971 5314 6206 4122 * 3818 2611 5133 3340 4157 6446 4615 188
+ 0 * * * * * * 9606 0 0
+
+I 189 5896 * 5784 5074 5892 * * 1305 * 2083 3495 4893 * 5898 * 3905 * 3797 * * 189
+ 0 * * * * * * 9389 0 0
+
+F 190 5373 507 * * 4046 * * 3685 5756 4475 * * * * 5403 5470 5363 * * * 190
+ 0 * * * * * * 8618 0 0
+
+C 191 3366 5160 3445 * * 3794 * * 4348 4162 * 3017 3411 4162 4221 2017 4967 * * * 191
+ 0 * * * * * * 8005 0 0
+
+I 192 4711 * 4377 * * * 4545 1929 4306 2875 4446 4388 * * * 4536 4466 2062 * * 192
+ 143 3410 * 0 * * * 7069 1073 0
+
+G 193 2687 * 2482 2604 * 1608 * * * 3587 * * * * * 3475 * * * * 193
+ 0 * * * * * * 5768 0 0
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+S 194 * * * * * * * * * * * * * * * 0 * * * * 194
+ 0 * * 0 * * * 3455 0 0
+
+//
+�HHsearch 1.5
+NAME b3693168b9f04cd2db237b30b4be5176
+FAM
+FILE b3693168b9f04cd2db237b30b4be5176
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:48:59 2013
+LENG 176 match states, 176 columns in multiple alignment
+FILT 130 out of 1041 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
+HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9725554254999999999999999999999999999850387807899999999999999999999999986997747667777667769999999999
+9999999999999999998859999999999999999999999999999999984799976118997487506899
+>Consensus
+xxxxxrxxxxxxvxxxLnxxlxxexxaxxxYxxxaxxxxxxxxxxxxlxxxfxxxaxeexxhaxxlaexixxlGgxpxxxxixxxxxxxxxxxxexlxxx
+lxxExxxxxxxxxlxxxaxxxxDxxtxxxlxxxxixeqxxxxxxlxxxlxxlxxxxxxxxxxxxxxxDxxlxxxxx
+>b3693168b9f04cd2db237b30b4be5176
+MVSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAA
+LQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKESS
+>gi|156933508|ref|YP_001437424.1| hypothetical protein ESA_01328 [Cronobacter sakazakii ATCC BAA-894]gi|156531762|gb|ABU76588.1| hypothetical protein ESA_01328 [Cronobacter sakazakii ATCC BAA-894]gi|333956802|gb|EGL74437.1| hypothetical protein CSE899_00345 [Cronobacter sakazakii E899]
+------------VVQKLNAQMNQEFYASNLCLYYSDWCAQQ--SLNGSATVLRQQAQHNVTQMMRLFDYLKQTGANPVVGALKSV-KPDCSSLEAIFHQM
+QDELGGRHAALARLMSEAQAARDDAMLAMLGE-FEQELRQDEALLATILNELTQARQ--AGLC-------------
+>gi|319789636|ref|YP_004151269.1| Ferritin Dps family protein [Thermovibrio ammonificans HB-1]gi|317114138|gb|ADU96628.1| Ferritin Dps family protein [Thermovibrio ammonificans HB-1]
+----------DKIVELLNRALADEWLAYYQYWIGSKVVK--GPMKSAVEAELVQHAADELRHADMLVMRILELGGTPILTPKrwfeltncgyDAP-EDP-
+-FVRRILEQNIKGEQCAIEVYNQIISFTK-DIDPVTYNLAVQ-IMTDEMEHEEDLQSLLEDLEnlKFLR-------------------
+>gi|110004363|emb|CAK98701.1| hypothetical ferritin protein [Spiroplasma citri]
+---------TKDIEKDLQHYIDEHIKMQFFCYNLSSAA--DKLGFPGFSHYFQVQAQDEVLHQRRIMNFVLDRDGHYQIKNIAEE-YKDIKNIIELMETY
+QTKRAYFAELTNKLAQHANTVGDLVTYKFYDW-FIIDFYEELAEVKDIIEWIKMSNN-----NYYEIDRKMG----
+>gi|260590733|ref|ZP_05856191.1| rubrerythrin [Prevotella veroralis F0319]gi|260537335|gb|EEX19952.1| rubrerythrin [Prevotella veroralis F0319]
+----------TGLEKFIEAVAMSKAMGVMNYYSLALMAEEQ--GLPEeLAKCFRELADRESVHAGFYATLNA------------K--LPS--DVFQMMEN
+MQKGELGAGKFLQPLADKLRELGREDVALQIEE-YIRQELHHGEILGELLAKYKK----------------------
+>gi|340755444|ref|ZP_08692131.1| ferritin [Fusobacterium sp. D12]gi|313687436|gb|EFS24271.1| ferritin [Fusobacterium sp. D12]
+------------------------------------------QQFMSIHSFTESQYDTYFGYYDDVAEALKMQGQRPLvrMkdylavTSIQEL-EDKNFS
+PCEVLSIVKADLEEMNQLAKEIRELAGEEDDFAVSNMMED-HIAANKKQLWFIDSMTK--------------------------
+>gi|116627595|ref|YP_820214.1| peroxide resistance protein,non-heme iron-containing ferritin [Streptococcus thermophilus LMD-9]gi|116100872|gb|ABJ66018.1| DNA-binding ferritin-like protein (oxidative damage protectant) [Streptococcus thermophilus LMD-9]
+------------TKAVLNQAVADLSV-AASIVHQVHWYM-RGPGFLYLHPKMDELMDSLNSHLDKISERLITIGGEPYstLVefssnsGLTET-TGTF-D
+QpmSDRIQLLVDIYKYLSVLFQVGLDITDEEGDVPSNDIFTD-AKSEIDKTIWMLTAELG--------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 2382 0 0
+
+V 2 * * * * * 1173 * * * * * * * * * 1829 * 1862 * * 2
+ 0 * * * * * * 2382 0 0
+
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+ 0 * * * * * * 3301 0 0
+
+Q 4 * * * * * * * 2548 2029 * * * 2675 2978 2704 * * * 2767 * 4
+ 0 * * * * * * 3672 0 0
+
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+ 0 * * * * * * 4258 0 0
+
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+
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+ 0 * * * * * * 5490 0 0
+
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+
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+
+H 10 4626 * 3039 * * 6024 4266 * 2887 5404 * 2917 3308 5262 4370 2617 3202 6162 * 5766 10
+ 0 * * 2000 415 * * 7946 1012 0
+
+S 11 3939 * 5349 1996 * 4466 * * 3277 * * 4129 3493 3630 6041 3870 2674 5062 6124 * 11
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+
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+
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+E 14 3848 6772 7015 2211 5703 6552 6106 2134 5546 3119 5571 6706 5553 5373 5505 5256 4494 3504 * 4947 14
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+
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+
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+
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+
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+
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+
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+
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+
+L 23 3244 * 3385 4377 5874 4153 5441 5266 5211 2915 4057 3104 * 4242 4913 3087 5300 4748 5967 6621 23
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+
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+
+L 25 5037 7170 * * 2795 * 4798 2907 * 1784 4026 5725 * 4098 7018 4423 4596 5570 5402 3648 25
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+
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+ 295 * 2435 * * * * 9543 0 0
+
+A 27 1255 5620 * 4847 * 3363 6227 * 6275 3382 6053 6400 * 3858 * 3185 3654 5564 * * 27
+ 0 * * * * 314 2353 9103 0 3036
+
+S 28 3152 * * 5667 4500 5052 5887 3459 * 3286 5246 5055 * 5106 * 2009 4421 2964 5531 4246 28
+ 0 * * * * * 0 9487 0 1331
+
+Y 29 4583 * 4207 5506 3908 4625 3621 5105 * 3403 5260 3810 * 3772 * 3841 3838 4660 * 2183 29
+ 0 * * * * 0 * 9487 0 1331
+
+T 30 4741 * 5761 5023 4054 * 4405 3730 5943 2361 4768 5854 * 2234 4642 4742 3828 4031 5904 5182 30
+ 0 * * * * * * 9557 0 0
+
+Y 31 5145 5569 * * 4650 * 5240 6480 4126 5140 6577 5764 * 5219 * * 6555 5281 * 524 31
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+
+S 32 5066 * 5599 6858 4223 5266 * 4575 5595 1747 3270 6923 * 4876 3812 4397 3102 4491 5211 4375 32
+ 51 * 4845 4322 74 * * 9557 1000 0
+
+S 33 2772 * 5708 6548 4773 7085 3594 4268 2928 4030 * 4096 * 3763 4733 3597 3867 5232 6973 3365 33
+ 0 * * * * 0 * 9491 0 1331
+
+M 34 4908 6967 6707 * 5371 4918 3084 5583 5315 2065 2811 3726 * 2792 * 6563 5744 5943 * 3626 34
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+
+Y 35 1258 * 7124 * 5700 3553 3937 5673 * 4906 6563 * * 5736 5663 2652 5742 6494 6453 3285 35
+ 0 * * * * * * 9563 0 0
+
+A 36 2658 5688 6757 5242 4295 5743 2366 5201 3602 4356 5874 5938 * 6557 4438 3337 4737 4362 5328 3956 36
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+
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+ 0 * * * * * 0 9559 0 1000
+
+F 38 2809 3093 * * 1956 * 5246 4462 * 3583 6226 3315 * * * 5041 6655 3620 * 3447 38
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+
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+
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+
+D 42 4683 6176 2392 4428 6285 1623 3762 6450 4167 6178 * 4170 * 5398 4804 4293 5549 * * 5022 42
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+
+V 43 4550 6232 5562 3256 5910 * 4479 3899 3098 3657 6889 4986 3305 6907 4181 4713 4804 3571 3383 4837 43
+ 0 * * * * 495 1783 9602 0 2853
+
+A 44 4845 5860 3509 4355 6788 1910 4116 * 4840 6890 5966 2662 * 3775 6051 3299 4682 7139 * 5303 44
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+
+H 46 4648 * 4313 3774 3682 4774 4416 4430 3802 3533 6182 4422 2310 6801 3879 4696 4345 5164 * 5945 46
+ 13 6788 * 0 * * * 9767 1026 0
+
+N 47 3896 * 4426 3138 7066 1523 5369 5355 4905 6875 * 3778 4566 4572 5489 4172 6149 4626 * 4744 47
+ 59 4645 * 2014 410 * * 9767 1475 0
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+
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+E 50 3308 * 3814 2608 * 5222 4417 * 2152 4324 * 4040 5414 4934 4217 3634 4335 6097 * * 50
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+
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+
+F 52 * 5359 * * 1312 * * 5248 * 1683 3615 * * 6923 * 5786 4949 5832 6364 3939 52
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+K 53 5389 * 2774 2311 7162 7128 6781 6538 3279 3859 7025 4594 * 3100 2546 5835 * 5191 * 4617 53
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+
+E 54 4045 * 3003 2155 * 4344 5323 5346 2655 4761 7077 4813 6700 4395 5238 3979 3854 5258 6606 * 54
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+
+H 55 4516 5174 5268 3263 5441 * 3468 3317 5263 2730 4809 5607 * 2452 4680 4882 * 3983 6753 5404 55
+ 12 6934 * 0 * * * 9749 1009 0
+
+S 56 1176 * * * 6970 4924 5531 4245 * 6840 4895 * * * 5759 2190 * 5418 * 2848 56
+ 0 * * * * * * 9749 0 0
+
+H 57 3401 * 2458 2707 * 7090 5379 4230 4160 3607 5674 3846 7183 3374 4712 4261 4557 6449 6522 * 57
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+
+E 58 5414 * 2835 1225 * 4763 4974 4796 4157 5782 * 5494 * 5362 3501 5924 5345 4460 * 6886 58
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+
+E 59 3894 5677 5759 1182 6053 * 4853 4663 4500 3864 5071 4590 * 5858 5903 4371 4606 4357 * 6892 59
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+
+R 60 4098 * 5973 5272 3601 6872 5579 7077 5726 2739 2887 4598 7000 4963 2153 5343 5943 5241 3509 6008 60
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+S 176 * * * * * * * * * * * * * * * 0 * * * * 176
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+
+//
+�HHsearch 1.5
+NAME b49b9cb98eb527401c12984cc1a2e18d
+FAM
+FILE b49b9cb98eb527401c12984cc1a2e18d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:04:07 2013
+LENG 181 match states, 181 columns in multiple alignment
+FILT 157 out of 1390 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECHHHCCCCHHHHHH
+HHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEEEEEEEECCCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9787379998998898788899999999987367889999998604887999999999999999963555566788779999999988883798999999
+999998647869999459989999999889999515702560088043233199999857776789887536686877779
+>Consensus
+xxxxxxxirxxxxxdxxxxxxxxixxlxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxivGxxxxxxxxxxxxxxxxxxxxixxxxVxxxxrgxGigxxLl
+xxxxxxxxxxxxlxxxxxnxxaxxxyxkxGfxxxxxxxxxxxxxxxxxxxxxxxmxxxlxxxxxxxxxxxxxxxxxxxxxx
+>b49b9cb98eb527401c12984cc1a2e18d
+MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALL
+DAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW
+>gi|301059854|ref|ZP_07200746.1| acetyltransferase, GNAT family [delta proteobacterium NaphS2]gi|300446066|gb|EFK09939.1| acetyltransferase, GNAT family [delta proteobacterium NaphS2]
+-----------------------M-EIWEKKgDYLDpkrsneierAYIAKLEIEMKNGnCiaWVIEDKESVVASGAVtFISLVpNPSDLSSKVAYLHSMY
+TEKSYRNKKCAQQIIQKAIGLCAsQGVKRIMLNASDAGQPVYQKIGFRSAPDTM-------------------------------------------
+>gi|188501574|gb|ACD54701.1| GCN5-related N-acetyltransferase-like protein [Adineta vaga]
+-----FVLRNATDSDNVS-----LAKLNqqtffetyVNDYSTRytksdiknyfnssVSPESFAKTISDPkqAtwiIEDRTNGKFAAFAnagpckMTLPEI
+EK----GK-DGEIYRLYVLRHYQDDKLGETLMNVSLSwLEKqyPgrPIWLGVWKENLKAQEFHKQYNFKKVGERFY--QIGEYK--RPSFIMKKESS---
+------------------
+>gi|218677147|ref|YP_002395966.1| putative acetyltransferase [Vibrio splendidus LGP32]gi|218325415|emb|CAV27533.1| putative acetyltransferase [Vibrio splendidus LGP32]
+---mtieeENIQFQLVSNLEFEELFACVKQGLFihvDSVFgwDDDFQRQRLLNEYNPSwFHWVYLGKQRVGLVCF--------KPYDNAYHVHLLIISHQ
+YQDQSIGKKVMSriHEKAHQEqrnQVTLSSFRSN-TRAISFYQSLSYRVVD----------------------------------------------
+>gi|171915043|ref|ZP_02930513.1| putative acetyltransferase [Verrucomicrobium spinosum DSM 4136]
+LTSARLLLRPLHPGDAEA-----LCAYRslPEVAryqswesfGPDDAARLIEAQRTAQPdvpgtwfqlaFVETATGRVIGDCGLHCLQE-----DGRQME
+MG-ITLSPQYQGRGYATEAVECVLHYLFGtlhkhRVLASTDALNHRAAALFRRLGFRQEAHLVESLWFKGQW--GSEYLFALLKREWEASHSQKNLD---
+------
+>gi|120436347|ref|YP_862033.1| hypothetical protein GFO_2001 [Gramella forsetii KT0803]gi|117578497|emb|CAL66966.1| hypothetical protein GFO_2001 [Gramella forsetii KT0803]
+-----MEIKEADLNDIPE-----IVEVLKASLGEEqleLSEKVWRYKhIDNPFgssviLIAKEDNKIVGVRAFMRWQWQHGDKKYHALRAVDTATHPNHQ
+GKGIFKKLTLRAVDFSRsNDDNFIFNTPNEQSRPGYLKMGWEQVGNIQVGLRPSLSFLKFKKKQKFYKINKNISNSEIKELCTKW------
+>gi|256825653|ref|YP_003149613.1| acetyltransferase (GNAT) family protein [Kytococcus sedentarius DSM 20547]gi|256689046|gb|ACV06848.1| acetyltransferase (GNAT) family protein [Kytococcus sedentarius DSM 20547]
+------HLRKPVaae---TPA-----MTRLLaahQERVLGKasAAWADVDDRVLGR-gaefrfhRIAQDAdgq--ARGWVNVNDRAV---HR----vmid
+vyldpal-------Vagevd-----gadAAAVWDALFAWGRAAAIRmawrrgvsetVLDSSPYEADEFTRERLAAAGFHK--------------------
+----------------------------
+>gi|268610629|ref|ZP_06144356.1| hypothetical protein RflaF_14177 [Ruminococcus flavefaciens FD-1]
+-----FNCRILTRDEIASVYNAFMKQDFPSD--ELKPLSMITRSLDKGEyfcYGIFSGDKLCGYAYFVSI----IMDEKQYCLLDYFAILSDLRGQGTGS
+EFLHLLREELKnaEMVICESEDPVGTSgdeldirqrrIAFYLRNHFIDTGVKAEI---------FGVNYVLLELDSGRKHSEA-------------
+>gi|83945228|ref|ZP_00957577.1| hypothetical protein OA2633_00635 [Oceanicaulis alexandrii HTCC2633]gi|83851398|gb|EAP89254.1| hypothetical protein OA2633_00635 [Oceanicaulis alexandrii HTCC2633]
+-----------NLEDMQRIAVVRALVYMAEQDCP-YDEEFDGNDLAgATHFLGEAGGEPLGCLRIRW------FADF--AKIERVCVRKGHRSGRVARQM
+MTEAMEIIRrKGYRKFVGHVQEHLIPYWKRYGFIHREHRGVFVF-SDRA--YAE--MEGRPAPHPQalHIDTDPLILDRPEGD--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 7082 0 0
+
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+ 286 2881 4501 1204 821 * * 7600 1303 0
+
+T 3 * * 4873 * * 3635 4693 * 4699 * * 2796 4852 4816 4931 3370 1361 3732 * * 3
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+
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+
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+
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+
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+
+A 8 7312 5355 * * 3047 * * 1616 * 1870 6831 6015 6244 7334 * * 5075 2892 7080 4915 8
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+
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+
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+
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+ 11 7023 * 609 1538 0 * 11102 1118 1145
+
+H 12 3981 4995 3820 3542 * 4633 5383 6039 3688 5274 7422 4169 6027 3772 3218 3642 2407 4918 * 7240 12
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+
+T 13 3743 * 3940 3133 5497 5415 5104 4800 4123 3368 6124 4711 2370 4954 4124 5001 4044 4975 7163 6055 13
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+
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+
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+ 50 * 4869 * * 6983 11 10067 0 8640
+
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+
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+
+T 29 3200 * 4913 3349 * 6442 4923 4303 4147 4751 5569 3303 3524 3740 3262 4178 4264 5157 6250 4870 29
+ 45 5738 6415 1589 583 965 1036 11108 1232 1410
+
+G 30 3281 * 2559 2547 * 5197 7316 7420 3596 5029 7226 4290 7144 3591 3796 3556 4290 6270 7215 5169 30
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+
+A 31 2633 4213 6115 4680 5217 4206 6363 4053 5617 3755 7256 4657 5689 6237 5417 3261 3635 3076 4946 4457 31
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+
+G 34 4367 6145 3268 4144 7212 3009 5701 5364 3782 4418 6205 4546 2410 4882 4601 4066 4282 4257 * * 34
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+
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+
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+ 61 4602 * 1876 459 1638 559 11160 1673 1536
+
+T 37 3647 5308 3248 3914 6212 6428 6971 5663 6133 5315 7377 3973 2654 5216 6061 2489 2867 4927 * 6303 37
+ 68 4990 6082 1651 553 522 1721 11163 1685 1319
+
+E 38 4651 * 3043 2740 6183 5650 6312 4121 3503 3323 6147 5653 4103 4218 3412 4967 4290 4870 7190 4910 38
+ 68 4450 * 1280 766 553 1651 11154 1887 1298
+
+T 39 3065 6162 3161 2191 6523 4445 4465 7356 3854 7110 6948 4134 4358 4421 5315 3617 5026 5168 * 5298 39
+ 41 5608 7120 2060 395 0 * 11186 1433 1000
+
+D 40 4200 * 3403 2572 3886 4978 5252 7203 3854 4996 6246 5027 6090 3759 4044 4423 4463 3888 4333 4384 40
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+E 42 3477 * 3533 2956 6082 5360 5755 4270 3288 3575 5470 4091 5302 4072 3444 4664 4089 5854 * 5273 42
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+H 43 3444 7153 3967 3406 6236 4457 4688 5776 3654 7453 5614 4195 7116 3698 2779 3280 5322 6453 7109 3471 43
+ 8 * 7480 * * * 0 11181 0 1017
+
+T 44 4073 4627 4680 3949 4026 5383 4737 3548 4923 3005 4401 4929 6054 3984 3001 4296 6244 4962 6433 4670 44
+ 138 3454 * 416 1997 0 * 11185 2751 1278
+
+L 45 4995 5689 5810 4728 3713 5242 * 2607 5508 1844 4029 6312 5099 5613 5285 5322 4767 4009 7153 4428 45
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+G 47 4260 6950 3172 3912 7043 2577 4538 5304 4638 5007 7370 3017 4390 3897 3502 3878 4626 7300 * * 47
+ 68 4914 6260 1094 912 1069 934 11166 1774 1375
+
+M 48 3949 5634 3833 3716 3810 4084 4645 5020 5235 4404 5182 4515 4143 4324 4556 3637 4034 4624 5997 3717 48
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+L 51 3549 6230 7152 * 5382 3225 * 2553 5297 2430 4631 * * * * 6175 4772 1978 5714 5777 51
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+H 55 3731 * 2017 3217 * 2772 4635 6923 4303 6003 * 3191 5642 4616 5484 4697 3945 * 7243 7348 55
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+G 56 * * 2365 2887 * 1678 5791 6999 4435 * 6249 3447 6364 4076 4780 4026 6368 * * * 56
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+I 58 4172 6221 * * 4445 6018 * 2098 6321 2343 6226 5474 2912 * 5639 6138 6175 2366 * 5987 58
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+
+I 59 2586 4928 * 7219 7299 * * 1922 6271 4082 6375 * * 7044 7215 7013 5292 1374 * 7276 59
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+
+A 60 2588 6315 * 7184 * 494 6983 * * 7355 * 7009 * * 7277 4338 5675 7214 * * 60
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+
+H 61 4048 3582 7438 6952 2348 6376 4495 4032 * 4008 4981 6058 * 5866 6288 4346 3859 3128 4689 3080 61
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+A 62 2141 3603 * * 4949 3370 7070 3951 * 2558 4084 * * * 7327 5069 4350 2557 7374 * 62
+ 0 * * * * 1460 652 11253 0 1976
+
+A 63 3030 4402 7491 5254 4878 2982 5307 3825 6371 3491 4951 4676 * 5256 4323 3573 3396 4172 7035 4281 63
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+V 64 3512 4967 6958 * 2935 3816 * 3572 * 1919 5226 6241 * * 6382 5131 5507 2638 5897 4573 64
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+I 65 4089 5610 5567 4410 3352 4564 4804 3949 3970 3678 4816 5667 * 7438 4443 3523 3802 3729 4967 3366 65
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+Q 66 4905 6192 4257 3799 3664 6142 5288 3349 3756 4139 4290 4809 3712 4950 3824 4397 4372 3960 5247 5112 66
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+
+R 67 4223 6865 3353 3183 5765 4841 5382 3895 3811 4682 5936 4640 3481 5012 3071 5018 4361 4801 7146 4138 67
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+
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+ 226 3543 4084 1078 926 3667 118 10767 2145 5978
+
+L 69 5014 6655 4456 3489 3925 4505 6722 4004 4112 2969 5607 6532 3214 5710 4281 3828 5253 3545 5190 4719 69
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+I 70 4080 6351 4042 4511 * 5873 5080 4190 3677 6197 5946 3297 4504 4352 4940 2845 3121 4812 * 3358 70
+ 115 4417 5063 3902 100 5236 39 10067 1278 8418
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+
+G 73 4561 6548 3032 4119 5239 2762 4908 4693 4867 4223 6586 4223 3795 4302 3997 3998 5468 5207 5720 4240 73
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+
+N 74 3027 * 3583 4061 6359 3905 5724 5755 3492 4119 6725 4330 3509 4620 3319 3217 5389 5377 6888 5691 74
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+//
+�HHsearch 1.5
+NAME b5e4c6287793467d8b047e64ec6f935b
+FAM
+FILE b5e4c6287793467d8b047e64ec6f935b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:24:59 2013
+LENG 57 match states, 57 columns in multiple alignment
+FILT 167 out of 1145 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEHHHEEECC
+>ss_conf PSIPRED confidence values
+999995354899988325669999999884489959999579978987875689987
+>Consensus
+xxxxaxxxxxxxxxxxlxxxxgdxixvxxxxxxxwxxxxxxxgxxgxxPxxxvxxxx
+>b5e4c6287793467d8b047e64ec6f935b
+CYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYG
+>gi|149638364|ref|XP_001515583.1| PREDICTED: similar to BMX non-receptor tyrosine kinase [Ornithorhynchus anatinus]
+--AVEEWDSESKRNSEVQPNISNLYALKHE-SPDEWPVKTKQSNENFllesqpnrifkcqraskiswfVRRKGEEE--
+>gi|302414846|ref|XP_003005255.1| AbpA [Verticillium albo-atrum VaMs.102]gi|261356324|gb|EEY18752.1| AbpA [Verticillium albo-atrum VaMs.102]
+--QELREANIPAAQPPAGAQAGGQRALIHSARANtsptlkWstrtggWAPTRrARAASSLATTSSSSRT-
+>gi|32565949|ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans]gi|24817571|emb|CAA19487.2| C. elegans protein Y37A1B.2b, confirmed by transcript evidence [Caenorhabditis elegans]
+--LRKAVENYPtPPGGSSEDAHRQLLerrrkQMLRrHTCSTLIKQDTSASPHKMKPpilmeeedEQHSTGK-
+>gi|55648067|ref|XP_512320.1| PREDICTED: cdc42-interacting protein 4 isoform 6 [Pan troglodytes]
+--CVAIYHFEDlGPPPPPSQGPARALSLWPrVKTSVlWKKTKGTAGP-GSGGKREAR---
+>gi|47226831|emb|CAG06673.1| unnamed protein product [Tetraodon nigroviridis]
+-LPPVSANPLGSGEvhGDSGLREGRSPGGVRQERR-----RGPaDPRRR-----------
+>gi|50309763|ref|XP_454894.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]gi|49644029|emb|CAG99981.1| KLLA0E20879p [Kluyveromyces lactis]
+-LFICITEYSKRMDDELDMRPGDKIQVVTDDgsyNDGWYFGKNLrTQEEGLYPKVFTQVI-
+>gi|328776214|ref|XP_393399.3| PREDICTED: tyrosine-protein kinase CSK [Apis mellifera]
+------------MTTHSNVTTPNITSHMNtGSTPVILTSNVTNPSNPAALS--VNP--
+>gi|47205035|emb|CAG14497.1| unnamed protein product [Tetraodon nigroviridis]
+-----------------------------lTgGvttfvalydyesrtasdlsfrkgerlqivnntegDWWLARSLTTGESGYIPSNYVAPS--
+>gi|125805800|ref|XP_694393.2| PREDICTED: myosin-VIIa [Danio rerio]
+-YAVAIQD-lsRqgASSALAIFWQGSHIAELQTrrcAVYHkGWRIFSRRrVDKSKeredksnwgsflRCNSDSA----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+
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+ 95 4542 5584 2665 248 * 0 10026 1670 1151
+
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+
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+ 26 5829 * 2100 383 1332 731 9986 1339 1528
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+
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+
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+
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+ 39 5230 * 0 * 655 1454 9610 1377 1180
+
+K 55 4717 5660 4318 2359 5496 5311 7194 3583 4327 3791 7044 5000 2519 5621 4373 5021 6082 3412 * 5963 55
+ 43 5085 * 3791 108 1202 823 9403 1248 1130
+
+Y 56 5205 6676 6733 4956 4129 * 6787 2379 5519 1904 5898 * * 5899 6626 6722 4526 2184 * 4121 56
+ 159 3260 * 1488 636 0 * 8854 1391 1015
+
+G 57 3355 * 3883 * * 1363 5333 5416 * * * 3828 5211 5416 5467 2295 4316 * * * 57
+ 0 * * 0 * * * 7155 0 0
+
+//
+�HHsearch 1.5
+NAME b6a8572284504b5d762ee82f90b16d91
+FAM
+FILE b6a8572284504b5d762ee82f90b16d91
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:04:18 2013
+LENG 109 match states, 109 columns in multiple alignment
+FILT 151 out of 1109 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEECCCCEECCCCEEEECCEEEEEECCCCEEEEECCEEEEECCCCCCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCEEEEEECCCCEEEECCC
+EEECCCCCC
+>ss_conf PSIPRED confidence values
+9890699783899989989999999669989998099899977873588752699958986999979997898567779997689999089859995898
+043798488
+>Consensus
+xxxlxxgxxLxxgxxLxsgxxxlxxxxdgnlvlxxxxxxvWxsxxxxxxxxxxlxlxxxGnLvlxdxxxxxiWxSxtxxxxxxxxlxlxxdGnlvlyxxx
+xWxSxxxxx
+>b6a8572284504b5d762ee82f90b16d91
+DNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTD
+RWATGTHTG
+>gi|224099309|ref|XP_002334494.1| predicted protein [Populus trichocarpa]gi|222872794|gb|EEF09925.1| predicted protein [Populus trichocarpa]
+------------------TGSKAVLTANRGISLTDPqGRELWRSETIIGVV-AYGAMTDKGNFVLQDRVSDKLWESfknpadtllpsqvldrgmtlssrq
+sENNFSMGRFQLKLTDDGNLELATinlpsDytnePYYKSGTDG-
+>gi|302760705|ref|XP_002963775.1| hypothetical protein SELMODRAFT_405198 [Selaginella moellendorffii]gi|300169043|gb|EFJ35646.1| hypothetical protein SELMODRAFT_405198 [Selaginella moellendorffii]
+-----QGSTLPKGNSLISpsTEFRLSMEAGCDLVVRSshSgeiMRRIF----HGRDQACVLSLWTNGVLMVTGLQ-GSAGRRKRAMDaSFCSMHGEKEQH
+EARNECEhekaNYllyWRRSN---
+>gi|302765240|ref|XP_002966041.1| S-receptor kinase 1 [Selaginella moellendorffii]gi|300166855|gb|EFJ33461.1| S-receptor kinase 1 [Selaginella moellendorffii]
+------------------ANARLQLTAQGLF----VsDGAQLITIANVPSVAS-AELQDNGNFVVISSSGS--WQSFdvptdtlltgqliqgnkdilrsg
+sfSLylnqNSIGLKSYAVPE--------SnsqSYWDvqrspTSSN--
+>gi|224057535|ref|XP_002299255.1| predicted protein [Populus trichocarpa]gi|222846513|gb|EEE84060.1| predicted protein [Populus trichocarpa]
+-DTLLPTQIMEKGGILSsrlsetnfsQGRFQFRLIPDGNAVLNTInlptgfpYEAYFWSKTVD-snssNAGYQVVFNESGYLYVLRANNTreaLTL-GRV
+VPaTENYHRATLHFDGVFVLY------------
+>gi|125551438|gb|EAY97147.1| hypothetical protein OsI_19069 [Oryza sativa Indica Group]
+-NQLKSGNTLTph--SYITSpsGDFAFGFLAiESelsySsqFILalwFNlkvaessQQKVVWFAAEESSgsavtvQQQAVLSISANQLSLSnAGNGVVWK
+NQ---NPNQrFGSLVEITDNGNVKFLGDDgktIWES-----
+>gi|302789784|ref|XP_002976660.1| hypothetical protein SELMODRAFT_72392 [Selaginella moellendorffii]gi|300155698|gb|EFJ22329.1| hypothetical protein SELMODRAFT_72392 [Selaginella moellendorffii]
+-----------------------------------------------VGENATLQFTTDGELKVEED-GDVVWSTKTANR-GVRWLCMSNRATIMLLDES
+gsnvIWQSS----
+>gi|255550026|ref|XP_002516064.1| Serine/threonine-protein kinase PBS1, putative [Ricinus communis]gi|223544969|gb|EEF46484.1| Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
+-RTILQGGELKYDQELVSadGMFKLKFGtvgESGESsdsYLgiwYNyieEKFPVWVANRDTPifGNSGILTVDSQGNLKILRDKGRSIVLYSVQKAIYNA
+IATLEDTGNFILRELNsngsikqvLWQSF----
+>gi|225461213|ref|XP_002280379.1| PREDICTED: hypothetical protein [Vitis vinifera]
+--------------------GVLRVTHQGILVVVNGInRILWNSNSSRSAQNPNAQLLESGNLVMKNGNDsdpeNFLWQSfdypcdtllpgmklgrntvt
+gldwylsswksADDPSKGNFTYGIDPSGlpQLVLRNGLavKFRAGPW--
+>gi|15227459|ref|NP_181720.1| curculin-like mannose-binding lectin fand PAN domain-containing protein [Arabidopsis thaliana]gi|75319139|sp|P93756.1|SD31_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1; AltName: Full=S-domain-3 (SD3) receptor kinase 1; Short=SD3-1; Flags: Precursorgi|1871193|gb|AAB63553.1| putative receptor-like protein kinase [Arabidopsis thaliana]gi|20196890|gb|AAM14823.1| putative receptor-like protein kinase [Arabidopsis thaliana]gi|330254951|gb|AEC10045.1| curculin-like mannose-binding lectin fand PAN domain-containing protein [Arabidopsis thaliana]
+--TLLPNQKFPAFEMLRAasensrsSYYSLHLEDSGRLELRwESNITFWSSGNEvvkkkkK-KKNIGAVLTSEGALFLEDQDLmRPVWSVFGEDHndTVK
+FrFLRLDRDGNLRMYS-----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+K 38 4240 * 4691 4675 5826 4190 4785 5265 3161 5838 * 3771 * 4894 2774 3476 2619 4191 * 4486 38
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+P 39 3200 5282 6880 4074 5847 4877 7175 3591 5317 4920 * 5126 2768 4218 4702 5019 3777 2261 6592 6996 39
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+I 40 5133 * 6722 6397 5249 6277 6631 2554 4786 2763 5425 5636 6693 5886 5236 5737 4564 1720 * 3540 40
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+
+W 41 * * 7013 * 4620 * * 6686 5781 7342 * 6616 * 6604 * 7209 * 6364 260 4529 41
+ 22 * 6029 * * * 0 8809 0 1154
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+A 42 2777 4948 7011 5561 6462 5328 7451 5117 5330 * 5737 4860 6026 3512 4019 2111 3021 3697 5283 5517 42
+ 79 5862 4794 787 1250 * 0 8777 1261 1422
+
+T 43 2273 * * * 7090 4758 * 6071 5682 6091 * 4750 4262 6699 * 1486 2328 5276 6970 6496 43
+ 42 5117 * 1724 520 2402 303 8770 1389 1969
+
+N 44 4341 * 3261 4294 6857 2975 4884 5966 3643 5076 6418 1886 4008 5737 7394 4935 4435 4678 6994 7620 44
+ 37 7187 5744 1660 549 3265 159 8721 1085 1893
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+T 45 3370 * 4881 5178 * 4416 5352 5091 7013 5217 6137 4764 5097 6756 2948 3460 1689 3865 6991 6676 45
+ 150 4379 4311 1614 571 278 2513 8747 1592 2072
+
+G 46 3086 5299 2959 4118 4432 3488 6010 4551 5064 4638 * 3767 5176 5766 4995 3273 4099 6168 4815 4476 46
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+
+G 47 4514 7436 4350 4814 5794 2176 4989 5718 4902 7157 6909 2761 4027 4280 4821 3284 4139 4101 * 6164 47
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+
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+
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+
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+ 121 3635 * 956 1046 459 1876 8783 2018 2152
+
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+ 116 3814 7366 1506 626 * 0 8883 1925 1259
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+I 72 4275 * * 5671 5686 7120 * 2109 5164 1933 6515 6895 5935 5910 6072 5390 4528 2288 7266 4835 72
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+W 73 * * * * 3814 6700 * 5608 6114 5642 6884 5369 * * * 6094 6758 6699 379 5099 73
+ 13 * 6791 * * 1110 898 8765 0 1430
+
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+
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+ 111 3925 6975 3433 140 841 1178 8501 1677 1897
+
+G 78 3387 7227 2479 * 4442 3764 4736 6986 5605 4030 5919 3021 5990 4428 6540 3066 4115 4675 * 4549 78
+ 135 3714 6248 1950 432 1298 753 8576 1892 1449
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+ 330 2900 3826 1533 612 506 1758 8481 2826 1971
+
+G 82 4296 6819 6025 4845 4755 1273 5825 5440 5486 5419 * 3969 3949 5928 6240 3774 5902 3965 * 4613 82
+ 143 4946 4007 1387 695 565 1626 8375 1592 1991
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+ 16 6471 * 3000 193 0 * 8565 1015 1328
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+C 86 2173 6461 6723 * 4373 7027 6012 4453 * 1052 5120 * * * * * 4815 4205 6578 5099 86
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+//
+�HHsearch 1.5
+NAME b903b162c87715ee7384e2af499c16cd
+FAM
+FILE b903b162c87715ee7384e2af499c16cd
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:31:15 2013
+LENG 99 match states, 99 columns in multiple alignment
+FILT 137 out of 1099 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCEECCCEEECCEEECCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCC
+>ss_conf PSIPRED confidence values
+941999999736853479818999996575089889999889959677580656888999799999999745469989999998878976899726899
+>Consensus
+xxxxPxvxvxxxxxxxxxxxxxLxCxaxgfxPxxixvxWxxxgxxxxxxxxxxxxxxxxgtyxxxsxlxvxxxxxxxyxCxvxhxxxxxxxxxxxxxxx
+>b903b162c87715ee7384e2af499c16cd
+IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+-S----------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne---DLRSWTAADMAAQN---------------tqrkweaagvaeqw
+----RAYLEGECLEWLRRYLEKGK---------------et--LQ--raE---
+>gi|82407640|pdb|1ZVO|C Chain C, Semi-Extended Solution Structure Of Human Myeloma Immunoglobulin D Determined By Constrained X-Ray Scatteringgi|82407641|pdb|1ZVO|D Chain D, Semi-Extended Solution Structure Of Human Myeloma Immunoglobulin D Determined By Constrained X-Ray Scattering
+--I--------------------------FR-------WPESPKAQAsSVPTAQPQAEGSLAKATTAPATTRNTGrggEEKKKEKEKE------------
+---
+>gi|145559665|gb|ABP73658.1| MHC class I antigen [Sus scrofa]
+----LKTLR-GYYNQSEAG-SHTYQWMYGCYlgPDGLFLcgysQFGYDGADYvALNEDLRSWTAADMAAQISKRKWEAADEAERMRSYLQGrcvEWLQKY
+LemgkdTLQHAD--
+>gi|291165399|gb|ADD81220.1| immunoglobulin light chain [Larimichthys crocea]
+--TAPTLTVLPPSSEQLqQGKATLMCLANKGFPSDWSLSWKVDSSSSIs-weESRSPVVLEKDGLYSWSSTLRLDADQwrkVDSVTCEATQGSQ-TSLSQ
+TLR---
+>gi|16555266|gb|AAL23601.1| MHC class I antigen [Papio anubis]
+-EPSSQSTI-PIVGIIAGL-VLLGTVVTGAAVAAVM--------------WRRKSSDR-----------------------------------------
+>gi|66864114|dbj|BAD99230.1| immunoglobulin mu heavy chain [Takifugu rubripes]
+-------SLFPLIQCGsgtG-TMVTLGCLAADFTPSDLTYTWRkDGVD-LKDFIQYP-PTMNGNFYTkisqiqVkRQDWDGSPNftCAATHSTGNLWTPF
+TRPKE-------
+>gi|194376438|dbj|BAG62978.1| unnamed protein product [Homo sapiens]
+----PSVFLFPPKPKDtlmISRTPEVTCVVVDVshEDPEVQFKWYVDGVEVHNAKTKLREEQYNSTFRVVSVLTVLHQDwlnGKEYKCKVSNKALPAPIE
+KT-----
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+ 139 3662 6313 455 1886 1698 532 8843 1768 1226
+
+Q 89 3492 * 3753 3102 6424 5282 * 4519 3033 4553 6437 5596 * 3013 4277 3353 2801 5281 * * 89
+ 49 4891 * 766 1280 1503 628 8660 1449 1251
+
+P 90 5733 * 3474 4477 5085 * 6093 * 3671 4614 * 6350 1369 6190 6325 3191 3547 5946 * 4443 90
+ 19 6259 * 0 * * 0 8578 1000 1113
+
+K 91 5005 * * 5926 4424 * 4827 2161 3171 2160 4587 5896 6004 4654 6072 * 4289 3119 * 5853 91
+ 55 4743 * 2322 322 0 * 8483 1219 1113
+
+I 92 4680 * 6352 3843 5930 5884 * 3064 3373 3513 6368 6249 * 5892 3403 2990 2491 3298 * * 92
+ 52 4823 * 1801 488 * * 8567 1139 0
+
+V 93 3659 5779 * 3304 5596 * 5955 3770 3517 2563 * * * 3698 3312 5949 3961 2953 * 4398 93
+ 35 * 5367 * * * * 8410 0 0
+
+K 94 * * 4444 5348 * 5457 3695 5227 3153 * 4442 3988 4283 4443 2861 3200 2674 * * 3630 94
+ 0 * * * * * 0 7771 0 1113
+
+W 95 4903 * * * 3143 * 4309 4444 * 2570 * * 4136 * 4324 * * 3217 1418 * 95
+ 46 4997 * 1262 778 0 * 7404 1280 1113
+
+D 96 4110 * 2059 2398 * 4950 5224 * 2637 * * 5046 * * 4163 3665 3859 4092 * * 96
+ 0 * * * * * * 7193 0 0
+
+R 97 4234 * 3514 * * 3511 * * 4520 * * * 1075 * 2738 * * 3276 * * 97
+ 0 * * * * * * 5977 0 0
+
+D 98 3309 * 3276 3407 * * 3076 * 3132 * * 3332 * * * 1436 * * * * 98
+ 0 * * * * * * 4078 0 0
+
+M 99 * * * * * * * * * 1146 1805 * * * * * * 1932 * * 99
+ 0 * * 0 * * * 2405 0 0
+
+//
+�HHsearch 1.5
+NAME b94e58bdb4361ef7c1237e2f79e9939a
+FAM
+FILE b94e58bdb4361ef7c1237e2f79e9939a
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:39:46 2013
+LENG 131 match states, 131 columns in multiple alignment
+FILT 70 out of 72 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCEEECCCEECCCEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEE
+EEHHHCCCCEEEECCEEECCCCCCCHHCCCC
+>ss_conf PSIPRED confidence values
+9999945744473877745265788789978689999866984788899999999998319999998489889999779999898899718831699885
+2222048825761047882854112001488
+>Consensus
+pRxxPGvvtGxGxxvxxxWlxxaxxxxGapIPxqIAdkLrGrxFxsFdxFRxafWxeVsxDpeLxxQFxxxNxxxmkxGxAPxaxxxexvGxrxkxelHH
+xxxIxxGGxVYdlDNLxixTPkxHixihxxx
+>b94e58bdb4361ef7c1237e2f79e9939a
+MRNKPGKATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHH
+EKPISQNGGVYDMDNISVVTPKRHIDIHRGK
+>gi|339489891|ref|YP_004704419.1| HNH endonuclease:S-type Pyocin [Pseudomonas putida S16]gi|338840734|gb|AEJ15539.1| HNH endonuclease:S-type Pyocin [Pseudomonas putida S16]
+PRNLPGVASGNGVITPDRVLDAATTAAGAPIPAKIAERLRGRRFARFDRLKEAIWMEIATDEVFSRHIMPAILDDMRRGLAPFAKRDQRVGKRVKLEIHH
+KHEIAKGGAVYDFDNLVFMTPQVHINHHRG-
+>gi|300938507|ref|ZP_07153246.1| type VI secretion system effector, Hcp1 family [Escherichia coli MS 21-1]gi|300456530|gb|EFK20023.1| type VI secretion system effector, Hcp1 family [Escherichia coli MS 21-1]
+PRKLPGVVTGRGVPLspGTRWLGmsVSNNGNGAPIPAHIADKLRGREFKTFDEFREALWLEVSQDPELIAQFSSGNQTRIKQGLTQKHHLKvGIMALKks
+lKNSRYIIVLQLNMAAAYTILIIYELLPPdytmRFTTGDKY--
+>gi|311033214|ref|ZP_07711304.1| YeeF [Bacillus sp. m3-13]
+-RHTPGVATTNKVSNAKVIMRGTDGNAGV-VPKEVADRLKGKSFKNFDAFRSEFWKTVSTS-SYAGEFSSANIKRMEKGFAPIAPKSQHYGKQKSYVLHH
+LTPINHGGGVYDIDNLLIVSPRLHQDIL---
+>gi|167035534|ref|YP_001670765.1| S-type pyocin [Pseudomonas putida GB-1]gi|166862022|gb|ABZ00430.1| S-type pyocin [Pseudomonas putida GB-1]
+---------------------------ASHLPEFIIQKLAGRTFHSFDHFSQSFWLAIAEDPIYSQQFIPAQLNRLKKGWPPRAPFHETAKGLRSYQLCH
+LNPPEWGGLMYDAENLRIMSA----------
+>gi|167036364|ref|YP_001671595.1| S-type pyocin domain-containing protein [Pseudomonas putida GB-1]gi|166862852|gb|ABZ01260.1| S-type Pyocin domain protein [Pseudomonas putida GB-1]
+----TGVVSGNGQVAGADWWPANGAAAGVAMPVQVGNQLRGRLFTGMPAFESAVWRAIAAEQGLLGQFDEVNQRRIIRGFPPVAPRASWSGARHEFELRH
+VGAVDVGSGLYNLDQLRIHTPAD--------
+>gi|300724110|ref|YP_003713427.1| hypothetical protein XNC1_3257 [Xenorhabdus nematophila ATCC 19061]gi|297630644|emb|CBJ91309.1| hypothetical protein XNC1_3257 [Xenorhabdus nematophila ATCC 19061]
+--------------------------------------------TPLDKFREDIWRAVEKDPTLKQNLKtKANKKAIEKGKAPFVRKKDQVGGRKKLELH
+HIAAIL--------------------------
+>gi|238786554|ref|ZP_04630416.1| klebicin D activity protein [Yersinia bercovieri ATCC 43970]gi|238712540|gb|EEQ04690.1| klebicin D activity protein [Yersinia bercovieri ATCC 43970]
+-----------------------------------------------------------------GQFNIVNKVEMINYRAPYPPAIEKVGGRKKYEIHH
+IKFIKMGVK----------------------
+>gi|108806970|ref|YP_650886.1| hypothetical protein YPA_0973 [Yersinia pestis Antiqua]gi|108778883|gb|ABG12941.1| conserved hypothetical protein [Yersinia pestis Antiqua]
+---------------------------------------------QFRGMRSKFLKSISDNPEVKKRFDSATLADLANGKAPK-----------GWDVHH
+KLPLDDSGT-NDVGNLVLI------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * 2533 4428 5476 * 452 * 5191 * * * * * 1
+ 0 * * * * * * 3313 0 0
+
+R 2 * * * * * * * * * * * * * * 0 * * * * * 2
+ 0 * * * * * * 3440 0 0
+
+N 3 * * 1976 4737 * * 4280 * 2626 4697 * 2054 * 5661 * 3129 * * * 3621 3
+ 0 * * * * * * 3440 0 0
+
+K 4 * * 4126 2489 * * * 3129 2980 2342 3786 5590 * 4193 * 4522 3258 5041 * * 4
+ 0 * * * * * * 3440 0 0
+
+P 5 4378 * * * * * * * * * * * 209 * * 4884 4234 * * * 5
+ 0 * * * * * * 3562 0 0
+
+G 6 * 5879 * * * 25 * * * * * * * * * * * * * * 6
+ 0 * * * * * * 3562 0 0
+
+K 7 4774 * * 6275 * * * 4141 3092 * * * * 5642 * * 1978 992 * * 7
+ 0 * * * * * * 3562 0 0
+
+A 8 1309 * * * * * * 4992 * * * * * * * 5086 * 901 * * 8
+ 0 * * * * * * 3562 0 0
+
+T 9 * * * * * * * * * * * * * * * 1378 701 * * * 9
+ 0 * * * * * * 3562 0 0
+
+G 10 * * * * * 224 * * * * * * * * * 3127 5093 * * * 10
+ 0 * * * * * * 3562 0 0
+
+K 11 * * * * 5421 * 3711 4908 2177 * * 2407 * 3937 3261 3208 5886 4095 * 3264 11
+ 0 * * * * * * 3562 0 0
+
+G 12 * * * * 3590 224 * 4992 5093 * * * * * * * * * * * 12
+ 125 3590 * 1820 480 * * 3562 1147 0
+
+K 13 5086 * * 1710 * * * * 3251 4604 * 4142 * 1890 * * 5886 2511 * * 13
+ 46 4992 * 2322 322 * * 3562 1018 0
+
+P 14 3533 * 3572 5974 * 4604 * 4256 3826 * * 4381 2154 3804 2986 4197 4242 3800 * * 14
+ 62 4577 * 1585 585 * * 3562 1048 0
+
+V 15 4234 * * 4992 * * * 2790 * 2750 * 5093 * * * * 3092 1072 * * 15
+ 200 2948 * 1000 1000 * * 3562 1247 0
+
+N 16 4566 * * 4947 5034 1629 * * * * * 4403 4868 3590 * 2165 2443 * * * 16
+ 0 * * * * * * 3562 0 0
+
+N 17 3203 * 2469 * * 1362 * * 2862 * * 3768 * * * 5789 3429 * * * 17
+ 28 5711 * 1000 1000 * * 3562 1000 0
+
+K 18 * * 4234 * * 4573 * 2513 2585 4884 * 2988 5711 * 2610 4828 3475 3394 * * 18
+ 0 * * * * * * 3562 0 0
+
+W 19 * * * * * * * 5093 * 3590 * * * * * * * 4868 229 * 19
+ 0 * * * * * * 3562 0 0
+
+L 20 * * * * 4897 * * * * 466 2634 * * * 5100 * * * 4258 * 20
+ 0 * * * * * * 3563 0 0
+
+N 21 2403 * 2397 5809 * 2372 * * 3552 * * 5197 4258 * 3587 3638 * * * 3613 21
+ 164 3217 * 1000 1000 * * 3563 1206 0
+
+N 22 2636 * 2998 4204 * 1709 5495 * 4589 6035 * 3375 * 5770 * 5760 5738 3024 * * 22
+ 0 * * * * * * 3563 0 0
+
+A 23 943 * 4599 * * * * * 4195 * * 4258 4764 * 4250 3034 3054 * * * 23
+ 26 * 5809 * * * * 3563 0 0
+
+G 24 3604 * 5079 * * 1289 5299 * * * * 2497 * * 5482 3187 2794 * * * 24
+ 0 * * 2322 322 * 0 3556 1000 1000
+
+K 25 2777 * * 4867 * 3732 * * 2434 * * 3240 * 3150 3283 3109 3030 * * * 25
+ 194 * 2991 1000 1000 0 * 3566 1000 1000
+
+D 26 2699 * 2726 3973 * 1257 * * * 4863 * 3748 * 5648 * 3575 * * * * 26
+ 0 * * * * 0 * 3427 0 1258
+
+L 27 2876 * 4242 2989 * * * 3287 * 2398 3898 2432 * 3661 * 4025 * * * * 27
+ 0 * * * * * * 3578 0 0
+
+G 28 3891 * * * * 217 * * * * * * 4320 * * 5480 * * * * 28
+ 0 * * * * * * 3706 0 0
+
+S 29 721 * * * * * * 4874 * 5965 * * * * * 3119 4949 2355 * * 29
+ 183 * 3072 * * * * 3645 0 0
+
+P 30 3545 * * * * * 4117 * 5501 * * * 332 * * 4626 * * * * 30
+ 0 * * * * 0 * 3479 0 1327
+
+V 31 * * * * 5497 * * 447 * 4348 4410 * * * * * * 2753 * * 31
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+
+P 32 * * * * * * * * * * * * 0 * * * * * * * 32
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+
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+
+I 35 * * * * * * * 335 * * * * * * * * * 2271 * * 35
+ 0 * * * * * * 3645 0 0
+
+A 36 307 * * * * 4410 * 4348 * * * * * * 3655 * * 5963 * * 36
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+
+N 37 * * 584 2694 * * * * * * * 2954 * 4348 * * * * * * 37
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+
+K 38 * * * * * * * * 565 5452 * * * 2407 3438 5615 * * * * 38
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+
+L 39 * * * * * * * * * 25 5845 * * * * * * * * * 39
+ 0 * * * * * * 3623 0 0
+
+R 40 4330 * * * * * * 5022 4720 * * 5676 * * 368 4681 * 4377 * * 40
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+
+D 41 * * 4061 * * 146 * * * * * * * * * 4771 * * * * 41
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+
+K 42 * * * * * 5439 * * 1794 * * * * 4974 652 * * 5624 * * 42
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+
+E 43 6089 * * 1419 * * * * 3975 4439 * 6000 4422 * 2416 2943 3217 * 6123 * 43
+ 0 * * * * * * 3637 0 0
+
+F 44 * * * * 52 * * * * * * * * * * * * * * 4828 44
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+
+K 45 3639 * 5591 * * 3799 4360 * 2063 * * 2929 * * 3911 2108 3479 * * 5662 45
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+
+S 46 * * 4509 * * 4503 5122 * * * * 2137 6030 4316 5043 1203 2993 * * * 46
+ 0 * * * * * * 3711 0 0
+
+F 47 * * * * 136 * * * * 6030 4503 * * * * * * * 5023 * 47
+ 0 * * * * * * 3711 0 0
+
+D 48 5167 * 460 * * 4181 * * * 5712 * 6224 4186 * 3288 * * * * * 48
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+
+D 49 2553 * 2124 2408 * 4997 3693 * 3350 * * * * 6195 3539 3414 * * 6425 * 49
+ 0 * * * * * * 3686 0 0
+
+F 50 * * * * 282 * * * * 3140 4997 * * 5778 * 6077 * * * * 50
+ 0 * * * * * * 3686 0 0
+
+R 51 * 6179 * 4529 * * * * 5054 * * * * * 290 3724 5712 * * * 51
+ 0 * * * * * * 3686 0 0
+
+K 52 3715 * 5712 1495 * * * * 2281 * * * * 4371 2736 2779 * * * * 52
+ 0 * * 0 * * * 3686 1000 0
+
+K 53 675 * 5051 3301 * 5077 * * 3953 * * * * 4306 * 4071 5225 6523 * * 53
+ 0 * * * * * * 3712 0 0
+
+F 54 * * * * 614 * * 3249 * 2614 * * * * * * 5341 4222 * * 54
+ 0 * * * * * * 3712 0 0
+
+W 55 * * * * * * * * * 4983 * * * * * * * * 46 * 55
+ 0 * * * * * * 3712 0 0
+
+E 56 4531 * * 3865 * * * 4797 1467 1956 3711 * * 4772 3646 * 5303 * * 6116 56
+ 0 * * * * * * 3876 0 0
+
+E 57 1676 6001 5763 1013 * * * * * * * * * * * 4865 3612 4593 * * 57
+ 0 * * * * * * 3876 0 0
+
+V 58 5797 * * * * * * 2496 * 6302 5126 * * * * * * 389 * * 58
+ 0 * * * * * * 4021 0 0
+
+S 59 1322 * * 5772 * 2612 * * * * * * 6285 * * 1303 * * * * 59
+ 98 * 3930 * * * * 4021 0 0
+
+K 60 3500 * 3098 3235 * * 5292 * 2188 * * 2328 * 2719 6132 5308 4234 * * * 60
+ 0 * * * * 0 * 4033 0 1193
+
+D 61 * 5419 340 3964 * * * * * * * 4269 * * * 6201 6148 * * 4545 61
+ 41 * 5146 * * * * 4021 0 0
+
+P 62 * * * 4912 * * * * * 5128 * * 536 3823 * 2769 5000 * * * 62
+ 0 * * 0 * 0 * 4014 1000 1072
+
+E 63 3709 * 3774 991 * 4549 * 4609 4880 * * 5933 * * 5797 3587 4608 3816 * * 63
+ 0 * * * * * * 4021 0 0
+
+L 64 5801 * * * 4951 * * 5702 * 402 * * * * * * * 4220 * 3057 64
+ 0 * * * * * * 4021 0 0
+
+S 65 2962 * * * 6269 4951 * 2627 3841 3169 5295 * * * * 1374 * 3791 * * 65
+ 0 * * * * * * 4073 0 0
+
+K 66 2660 * * 3250 * 2767 * * 1732 * * 4631 * 3334 3433 4498 6350 * * * 66
+ 0 * * * * * * 4147 0 0
+
+Q 67 * * 6359 3741 * 5867 4158 * * * * 3993 * 476 4608 * * * * 5858 67
+ 0 * * * * * * 4147 0 0
+
+F 68 * * * * 205 * * 4987 * 3311 * * * * * * * * * * 68
+ 0 * * * * * * 4147 0 0
+
+S 69 * * 2877 * * 4323 * 3441 2556 * 4987 2632 * * 6144 1826 4367 * * 6115 69
+ 29 5669 * 0 * * * 4147 1010 0
+
+R 70 5507 * * 2593 6925 5270 * 5277 3655 * * 4505 2302 3677 3346 2164 5237 * * * 70
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+
+N 71 1983 * 4514 * 6234 2369 4413 6252 * 4787 4344 3787 * 4186 4168 3275 * 3952 * * 71
+ 0 * * * * * * 4199 0 0
+
+N 72 * * 5014 * * * * 5027 * * * 406 * 4784 * 3224 4627 * * * 72
+ 0 * * * * * * 4199 0 0
+
+N 73 4779 * * * * * * 2819 2923 1750 6032 5229 * 1972 3753 * * 5532 * * 73
+ 0 * * * * * * 4199 0 0
+
+D 74 3423 * 4570 3310 5232 3853 * 5437 3535 6252 5454 3681 * 5062 3963 3588 2241 4696 * 5832 74
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+
+R 75 6063 * 3384 3978 5087 * * 5423 * 2542 * 3398 * 5927 1248 4802 6232 6414 6979 * 75
+ 0 * * * * * * 4199 0 0
+
+M 76 * * * * * * * 1518 * 3345 1128 * * * * * 6862 3532 * * 76
+ 0 * * * * * * 4388 0 0
+
+K 77 4043 * * 5125 * 6551 * 4407 982 5155 5634 * 6567 6628 2878 2944 6418 * * * 77
+ 20 6218 * 0 * * * 4352 1025 0
+
+V 78 5137 * 3994 3945 * 5263 6774 * 2259 4837 6416 2383 * 2169 3326 5924 * 5450 * * 78
+ 0 * * * * * * 4352 0 0
+
+G 79 * * * * * 129 * * 4853 * * * * * 5359 6353 * * * 6145 79
+ 0 * * * * * * 4352 0 0
+
+K 80 * * * * 3369 5043 * * 1765 1963 * 4155 * * 2745 * 5992 * 4862 3906 80
+ 0 * * * * * * 4352 0 0
+
+A 81 744 * * * * * * 4629 * * * * 3892 * * 2463 3364 5898 * * 81
+ 0 * * * * * * 4352 0 0
+
+P 82 4315 * * * * * * * * * * * 259 3759 * 4635 * * * * 82
+ 0 * * * * * * 4352 0 0
+
+K 83 6453 * * * 2291 * 4839 4534 2040 6379 * * * * 3353 4966 4656 4482 6302 2159 83
+ 78 * 4244 * * * * 4352 0 0
+
+T 84 1243 * * * * * 3635 * * * * * 3429 * * 3633 3033 2312 * * 84
+ 0 * * * * 2741 234 4273 0 1142
+
+R 85 5698 * 5111 * 6554 * 3636 3873 3524 5111 * 6766 1369 * 1932 * * 5795 * * 85
+ 0 * * * * * 0 4272 0 1114
+
+T 86 3978 * 6168 3195 3368 6295 * 5308 2507 2346 * 6839 3706 * 3105 4091 5420 5482 * * 86
+ 0 * * * * * 0 4272 0 1114
+
+Q 87 3254 5695 4216 3003 * * 4518 4319 3021 4772 * 4909 5284 4845 3872 2187 4495 5821 * * 87
+ 270 2647 6511 0 * * 0 4183 1328 1114
+
+D 88 * * 1966 1345 * 3417 5240 * * * * * * 2945 * 4873 * * 4247 6177 88
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+
+V 89 5817 * * * * * 2646 3651 3758 * * * * 1827 2841 3916 3812 6385 4151 4578 89
+ 0 * * * * * 0 4183 0 1142
+
+S 90 2848 * 5684 * * 6406 6132 3958 * 5139 3651 * * * 6388 4439 * 1244 * 2617 90
+ 20 6158 * 0 * * 0 4183 1000 1142
+
+G 91 3651 * * * * 272 * * 4513 6132 * 5328 * * * 6741 * * * * 91
+ 0 * * * * * 0 4183 0 1142
+
+K 92 4414 * 6614 4577 * 1692 * * 1756 3651 * 5207 3658 6202 5012 3948 * * * * 92
+ 26 * 5800 * * * 0 4183 0 1142
+
+R 93 * * * * * * 4229 * 2404 4066 * 5155 * 4434 726 * * 5712 * * 93
+ 230 2765 * 1928 440 1362 711 4145 1328 1191
+
+T 94 * * 5333 3307 * 5247 4477 4572 1756 5325 * 5192 * 4402 3599 5716 3596 2590 6075 * 94
+ 15 6607 * 2296 329 0 * 4190 1026 1098
+
+S 95 6461 * * 4354 * 4418 * * 1318 * * 3713 6454 5086 3793 2567 3740 4087 * * 95
+ 20 6177 * 1585 585 * * 4333 1000 0
+
+F 96 * * * * 1351 * 4766 4381 * 4107 * * * * * 3713 6598 6317 5070 1572 96
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+
+E 97 * * 4488 650 * * 5042 4158 * * * * * 3063 3773 * * 4673 * * 97
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+
+L 98 * 5365 * * * * * 1427 * 1046 5999 * * * * * * 5019 * 3773 98
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+
+H 99 * 4574 5216 * * * 382 3773 * * * * 6151 * 4934 * * * * 4508 99
+ 0 * * * * * * 4259 0 0
+
+H 100 * * * * * * 110 3773 * * * * * * * * * * * * 100
+ 0 * * * * * * 4259 0 0
+
+E 101 * 5999 4613 5291 6207 * * 3250 1939 3560 * 4681 * * 5648 5124 * 1449 * * 101
+ 0 * * * * * * 4259 0 0
+
+K 102 6032 * 3899 3633 * 4418 3969 3841 2357 3265 * 3513 * 3251 * * 4957 2915 * * 102
+ 0 * * * * * * 4259 0 0
+
+P 103 2624 * * 2641 4715 * 5708 * 6151 4732 * * 1572 3281 4863 5528 5365 * 5349 5356 103
+ 0 * * * * * * 4259 0 0
+
+I 104 * * * * * * * 555 * 3042 5365 * 4574 * * * * 2926 * * 104
+ 0 * * * * * * 4259 0 0
+
+S 105 3681 * 3696 2600 * * 4209 * 3023 6032 * 3106 * 3492 * 1974 6399 5940 * * 105
+ 0 * * * * * * 4259 0 0
+
+Q 106 * 6098 2931 3002 * * 4169 * 3137 * 3533 3548 5983 2937 4396 5125 * 4835 4588 3488 106
+ 0 * * * * * * 4221 0 0
+
+N 107 3501 * 5166 6186 * 462 * * * * * 3908 * * 5942 4033 * * * * 107
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+
+G 108 3786 * * * * 187 * * * * * * * * * 4835 * 6171 * * 108
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+
+G 109 1670 * 2979 2557 * 2583 * * 4779 4588 6157 5385 * * * 4051 4447 * * * 109
+ 46 * 4998 * * * * 4221 0 0
+
+V 110 * * * * * * * 3916 * 4203 4681 * * * * * * 392 * 3677 110
+ 0 * * * * 0 * 4056 0 1070
+
+Y 111 * * * * 4235 * * * * * 5181 4770 * * * * 3812 * * 301 111
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+
+D 112 * * 732 * * * 4521 3812 * * * 1820 * * * * * * * * 112
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+
+M 113 4635 * * * 4645 * * 2052 * 1691 2721 * * * * * * 2201 * * 113
+ 0 * * * * * * 4153 0 0
+
+D 114 * * 352 3800 * 4370 * 3812 * * * 5320 * * * * * * * * 114
+ 0 * * * * * * 4153 0 0
+
+N 115 * * * * * * * 3812 * * * 165 * 4763 * * * * * * 115
+ 0 * * * * * * 4153 0 0
+
+I 116 * * * * 6273 * * 2446 * 637 4039 * 6171 * * * * 6017 * 3830 116
+ 0 * * * * * * 4073 0 0
+
+S 117 * 6046 * 3830 * 4951 6498 3004 5250 4951 6403 4085 * * 1163 5743 * 2717 * * 117
+ 0 * * * * * * 4073 0 0
+
+V 118 3978 * * * 4965 * * 950 * 3214 * * * * * * * 1841 * * 118
+ 0 * * * * * * 4027 0 0
+
+V 119 4727 * * * * * 4111 4275 * 2434 2407 4367 * * 5043 * 3150 1798 * * 119
+ 0 * * * * * * 4027 0 0
+
+T 120 * * * * * * * * * * * * 3824 * * 3006 313 * * * 120
+ 0 * * * * * * 3902 0 0
+
+P 121 4391 * * * * * * * * * * * 70 * * * * * * * 121
+ 99 3918 * 2000 415 * * 3626 1096 0
+
+K 122 4380 * * * * * * * 642 5505 * * * 4958 2067 * * * * 5751 122
+ 0 * * * * * * 3515 0 0
+
+R 123 * * 3057 * 3539 * 4612 * 4751 2850 4270 3348 * 3425 1998 5514 5071 4966 * * 123
+ 0 * * * * * * 3508 0 0
+
+H 124 * * * * * * 155 * * * * * * * * * 3842 * * 4964 124
+ 0 * * * * * * 3385 0 0
+
+I 125 * * 3583 * * 5092 * 783 5417 * * 5452 * 3267 * 5505 3561 4344 * * 125
+ 0 * * * * * * 3385 0 0
+
+D 126 5915 * 2883 1364 * 3238 * 5653 3443 * * 3460 * 3975 5959 4668 4974 * * * 126
+ 0 * * * * * * 3385 0 0
+
+I 127 5952 * 3842 * * * 3596 809 4558 4116 * 6210 * * * * 3363 4333 * * 127
+ 0 * * * * * * 3385 0 0
+
+H 128 * * * * * 5021 315 * 3802 4104 * * * 4810 * * * * * * 128
+ 58 4660 * 952 1049 * * 3290 1030 0
+
+R 129 5943 * * * * * * * 1703 * * * * 5257 1807 2680 5582 * * 2412 129
+ 0 * * * * * * 3185 0 0
+
+G 130 * * 3835 3806 * 1195 * * 3165 * * 2872 * * 3810 3290 * * * * 130
+ 0 * * * * * * 2900 0 0
+
+K 131 3752 * * 3758 * 2694 * * 786 * * 4134 * 4054 * * * * * * 131
+ 0 * * 0 * * * 2436 0 0
+
+//
+�HHsearch 1.5
+NAME ba17a05f924bfd8ff94a6c5d73635b4a
+FAM
+FILE ba17a05f924bfd8ff94a6c5d73635b4a
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:21:28 2013
+LENG 207 match states, 207 columns in multiple alignment
+FILT 121 out of 1261 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCEEEEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
+CCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
+HHHHCCC
+>ss_conf PSIPRED confidence values
+9988737954699997888999999999799979878998249999999993799899999743788898198657552889989999999999998799
+6503489899994489750799999999747765556788540479999889998878767884547999999999998737566888899987775145
+4543159
+>Consensus
+xxxxxxxxxxxxxvxxxxxxxxxxxxxxxxxgxxxxxxxxxxxxxvxvvvxxxxgxvlLxrxxrxxxxxxxwxxPgGxvxexxEsxxxaAxRElxEEtGl
+xxxxxxxxxxxxxxxxxxxxxxxxfxxxxxxxxxxxxxxxexExxxxxwvxxxelxxxxxxgxxxxxxxxxaxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+xxxxxxx
+>ba17a05f924bfd8ff94a6c5d73635b4a
+MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGL
+QASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAF
+AARRAER
+>gi|110639472|ref|YP_679681.1| oxidative damage repair protein [Cytophaga hutchinsonii ATCC 33406]gi|110282153|gb|ABG60339.1| mutator protein; oxidative damage repair protein [Cytophaga hutchinsonii ATCC 33406]
+-------------------------------------------AVVCAVIKQ-QDSYFIAQRSAKMKMPLKWEFPGGKV-EKGETNAQAIMREMKEEFDV
+NVEVIQEHPFYLHQYPNFILQLSPMEVEITSGKLTL---KEH--ANYRWVAVKDLFTYD-----------------------------------------
+-------
+>gi|156371508|ref|XP_001628805.1| predicted protein [Nematostella vectensis]gi|156215791|gb|EDO36742.1| predicted protein [Nematostella vectensis]
+---------KVVPCENSRFIQPSRVVFN-QNGRQRAWDYITEHDDVACLMFNTTrQAFVLVKQFRPAIYmhnnralhntkhgidgtlvksedpktealad
+ptsGITYELCAGIID-QNISLVKLMKQEMLEECGYDVpeNKIERVTSFRAGVGSTGAVQTIFYAEVTDEmivTgAGGGNLQEGERIEVYYLPLDKSKEFV
+FNESLAKPaALLFAFLWYF------------------------------
+>gi|304311751|ref|YP_003811349.1| predicted NUDIX hydrolase [gamma proteobacterium HdN1]gi|301797484|emb|CBL45704.1| predicted NUDIX hydrolase [gamma proteobacterium HdN1]
+------------------------------------------PSSTVVLLRDTRRgiKVLLLRRNSKIAYGGSWVFPGGRI-DPDEiaktdhnalqAAKL
+AAVRETHEEAGITLEQEKLVyFSHWTTPVIRPKRFsTWFFMAPVS-EKKVEI-DGGEIHDFEWHTPESALQAQNQGSIElpppTFVTLTQLSRFGSTTQA
+LEHFAAQPPLE--------------
+>gi|262200404|ref|YP_003271612.1| NUDIX hydrolase [Gordonia bronchialis DSM 43247]gi|262083751|gb|ACY19719.1| NUDIX hydrolase [Gordonia bronchialis DSM 43247]
+---------------------------------------------IAVLTVQS-g---GLQVVVQ-----hdasGRAALPGRFV-RERRTVEETVREVLE
+LKLGLSPDHIRPhlLAVFSDpdrDPRGWT-ISIAHAVAIPAGDLTD---VV-gE--LVPVTPDGRLASgerLLYD-------------------------
+---------------------
+>gi|339018605|ref|ZP_08644736.1| DNA glycosylase A/G-specific MutY [Acetobacter tropicalis NBRC 101654]gi|338752283|dbj|GAA08040.1| DNA glycosylase A/G-specific MutY [Acetobacter tropicalis NBRC 101654]
+--------------------------------------------GAHFLVIDAAGQVLLRKRPEKGLLAAMTELPGTPW-RTEPW-----STEeALTHAP
+VQTEWQD-CGMVKHVFTHFTLQVTVYAAHIsrfSNQAVQE----------GFLAPATGVDAL--------------------------------------
+-----------
+>gi|260655139|ref|ZP_05860627.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]gi|260630061|gb|EEX48255.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
+---------------------------------------------ITTVIIYYNGQVLV--NTTNTTESRQYELITCDA-DVEEIGQVALKIVLGKVIDD
+TINDIKKFKIEEETRDDSQVTVQYFIYEPQNETILK---DNSD---VKWLACDNLDQ-------------------------------------------
+-------
+>gi|288923038|ref|ZP_06417192.1| NUDIX hydrolase [Frankia sp. EUN1f]gi|288345621|gb|EFC79996.1| NUDIX hydrolase [Frankia sp. EUN1f]
+------------------------------------------------VFLTLGNRVVVANHR----GQPWFFLLGERV-APGEGVEQVLHRVLRRTAGF
+EVRALDFVGGMerhETGRGTgheaAHEIDVLFAGAVPRYAEFG---SRVDEVDLVTVERSDLHRV-----------------------------------
+--------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * 2383 714 * * * * * * 2333 * * 1
+ 0 * * * * * * 3269 0 0
+
+A 2 501 * * * * * * * * * * * * * * 2797 2741 * * * 2
+ 0 * * * * * * 4087 0 0
+
+E 3 * * * 1939 * * 3556 * * * * 3305 3531 * 1801 3605 3359 * * * 3
+ 115 3703 * 0 * * * 5107 1035 0
+
+H 4 * * * 2005 * * 2453 * 2624 * 4091 * * 3791 3013 3340 * 4250 * * 4
+ 82 * 4180 5044 44 * * 5985 1023 0
+
+D 5 4681 * 1980 * * 4421 * 4313 2690 * * * 2667 * 2975 4532 3525 4611 * * 5
+ 44 5048 * 1585 585 0 * 6635 1035 1000
+
+F 6 4781 * * 4303 3086 4437 * 3562 * 4686 * * 3905 4438 * * * 3751 1620 3146 6
+ 0 * * * * * * 6824 0 0
+
+E 7 * * 4833 2320 * 4926 * 3973 1959 3226 * * * 4102 4838 4647 2832 5042 * * 7
+ 0 * * * * * * 7099 0 0
+
+T 8 * 3601 4972 5021 * * * 2188 * 2618 * * * * 3876 4583 2104 2940 * * 8
+ 0 * * * * * * 7294 0 0
+
+I 9 4583 * * 4913 4888 4705 5135 2654 3983 2464 4770 5103 * * 3889 * 3510 2321 * * 9
+ 0 * * * * * * 7294 0 0
+
+S 10 3240 * * 2145 * 3043 5120 * 3494 4857 5005 3130 * * 5144 2649 4021 * * * 10
+ 0 * * * * * * 7485 0 0
+
+S 11 3834 5218 3502 2785 * * 3471 5163 * 5025 5120 * 5144 3857 2506 2772 3789 * * * 11
+ 0 * * * * * * 7485 0 0
+
+E 12 * * 5115 1935 5255 5446 4030 5597 2685 * * * * 4174 2278 3343 4920 * * 5062 12
+ 0 * * * * * * 7610 0 0
+
+T 13 5255 * 3085 3941 5219 * 3397 3943 4109 3979 * * 4065 4920 5313 4121 2501 3263 * 5237 13
+ 0 * * 3459 138 * * 7610 1000 0
+
+L 14 3366 * 5197 5272 * 5230 * 1856 5002 2499 * * * * 5309 * * 1673 * * 14
+ 0 * * * * * * 7693 0 0
+
+H 15 3186 * 5358 * 2509 * 3694 3684 * 3568 * * * * 5271 5263 * 2939 * 1898 15
+ 0 * * * * * * 7773 0 0
+
+T 16 3509 * 5263 2597 * * 5282 * 2491 * * 5233 4061 3755 3094 2807 3752 5478 * * 16
+ 0 * * * * * * 7773 0 0
+
+G 17 3649 5130 3850 * 5101 1362 * * * * * 2578 * * 5352 2961 3577 * * * 17
+ 71 5356 5419 0 * * * 7895 1000 0
+
+A 18 5353 * 5349 2814 4320 * * * 2076 * * * 2374 5127 3052 5377 5184 * 3823 4125 18
+ 34 * 5434 * * 0 * 7899 0 1043
+
+I 19 * * * 5365 3814 4935 4961 5364 4251 3891 5294 * 4928 5206 3049 5199 * 4235 1714 3260 19
+ 266 5456 2781 1585 585 * 0 7928 1000 1000
+
+F 20 4171 * * * 2461 4106 * 2811 * 1931 3953 * * * * 5166 * 2781 * 4009 20
+ 0 * * * * 0 * 7642 0 1818
+
+A 21 4527 5440 3046 4133 * 5290 4323 * 2823 4970 * 4444 5137 4372 2853 2975 3385 5453 * * 21
+ 0 * * * * * * 7957 0 0
+
+L 22 5793 5261 5042 * 3816 * * 3114 * 1767 4162 5328 5398 * 5199 5158 * 2067 * 4413 22
+ 0 * * * * * * 8000 0 0
+
+R 23 4330 * 4600 3429 3883 5535 5645 3873 2857 4534 5284 5152 * 5617 2602 * 5617 3985 * 2889 23
+ 0 * * * * * * 8199 0 0
+
+R 24 3714 * 3901 4151 * 4411 5294 5513 2846 3979 * 3751 5152 3941 2521 3879 5336 5319 * 4500 24
+ 0 * * * * * * 8199 0 0
+
+D 25 5581 4436 2421 3228 * 5720 3461 4641 5595 3149 5852 5264 * 5553 2926 4452 4402 5625 * 4422 25
+ 0 * * * * * * 8223 0 0
+
+Q 26 3234 5745 2537 3587 * 5643 4086 * 2614 5659 5434 4547 * 5633 3629 4566 3164 5761 5758 * 26
+ 101 5351 4528 1000 1000 * * 8257 1033 0
+
+V 27 4026 4024 * * 3482 * * 2976 * 2392 5408 * * * * 5387 * 1874 4253 3361 27
+ 31 * 5534 * * * 0 8218 0 1125
+
+R 28 4631 4597 * 2123 * * * 3877 3168 5639 * 5240 5459 3471 2398 4458 5402 3837 * 5557 28
+ 110 5371 4344 0 * 905 1102 8188 1018 1411
+
+M 29 4542 * 3957 * 2430 5582 * 3782 5357 2252 4379 4020 5731 * 4024 3396 5265 4390 * 5612 29
+ 0 * * * * 2004 414 8190 0 1381
+
+P 30 4437 * 3845 3950 5373 4707 5940 * 3527 5603 * 5609 1586 4084 4951 3158 4109 * * 5741 30
+ 139 3806 5609 2233 345 0 * 8372 1460 1256
+
+G 31 3759 6059 1945 5714 * 3735 6264 * 4142 5912 * 2493 4748 3749 4682 3873 3742 * * * 31
+ 28 5685 * 0 * 0 * 8527 1010 1000
+
+G 32 5705 * 6111 3842 6049 938 4881 * 4054 * * 4248 * 5933 5881 3210 4258 5713 * * 32
+ 105 4254 5828 1388 694 * * 8607 1304 0
+
+G 33 4628 * 5860 3325 5732 3872 4853 5903 2259 5675 * * 5710 3472 2459 3300 4944 5066 * 5598 33
+ 213 3259 4933 1209 818 0 * 8580 1694 1000
+
+I 34 3842 6085 * 2361 5957 * 5773 3813 3632 5473 * * 5994 3999 3411 3524 2872 3674 * 4720 34
+ 108 4241 5702 0 * 704 1373 8574 1260 1179
+
+V 35 3366 * 5998 3369 4304 5882 * 3892 4192 3125 4822 5516 4713 4217 3315 3465 * 3167 5903 5784 35
+ 51 4854 * 749 1304 0 * 8693 1224 1099
+
+T 36 5920 * 3505 3630 * 4606 5819 4622 6213 3839 5712 3458 3034 3805 4081 3400 4038 3963 4948 5872 36
+ 20 6208 * 0 * * * 8740 1008 0
+
+R 37 5681 * 4398 * 3119 5910 * * 4199 5016 * 4996 4406 5024 1876 5559 5872 4966 4100 2282 37
+ 50 4868 * 618 1521 * * 8740 1147 0
+
+E 38 4769 * 2664 2172 4600 3412 5177 5342 5978 5762 5793 5013 6223 * 4545 3721 4450 * 4554 3435 38
+ 23 * 6005 * * * * 8879 0 0
+
+V 39 4244 5212 * 5801 4991 6135 6132 4341 4242 3925 5923 5988 * 3908 4246 4315 4203 1932 4398 3202 39
+ 0 * * * * * 0 8942 0 1010
+
+V 40 3625 4427 * 6135 4481 * * 2942 5963 2937 6091 5198 3801 5811 * 5502 5026 1921 5904 3803 40
+ 55 4734 * 2326 321 0 * 8942 1280 1010
+
+E 41 6107 * 2957 2577 6000 2568 5172 6174 5242 3880 * 5216 3876 4996 3009 3987 4176 * * * 41
+ 54 5308 6432 2178 360 * * 9000 1143 0
+
+H 42 5079 * * 4149 4645 4567 3043 * 4538 4637 * 4040 5101 4258 2011 3940 4205 4423 * 3818 42
+ 122 3625 * 2232 345 * 0 9045 1604 1040
+
+F 43 5340 4950 3983 * 5361 3885 3832 6294 4200 5092 * 3118 2196 6166 3435 6409 4685 3233 * 5365 43
+ 244 2682 * 1610 572 0 * 9058 2213 1040
+
+G 44 3706 4996 3034 6304 5206 2599 4698 6128 4364 4666 * 4482 3278 5444 3593 3456 4718 4585 * * 44
+ 62 4579 * 2396 304 * * 9122 1289 0
+
+A 45 1714 5142 6744 5735 4984 2855 6215 5003 6449 6793 * 6705 5788 * 5597 2869 3602 3387 6797 4979 45
+ 0 * * * * * * 9524 0 0
+
+V 46 2959 4511 * 5790 4725 5300 * 4552 6566 4618 5873 * * * 6554 4425 4299 1062 6538 4734 46
+ 0 * * * * * * 9807 0 0
+
+A 47 2650 4205 4484 5683 * 3145 5484 4380 * 3803 3329 5861 6331 * 4641 4199 3472 3028 6520 5653 47
+ 0 * * * * * * 9810 0 0
+
+I 48 3031 4437 * 6883 5003 4243 * 2108 6747 3278 4212 * * * 6468 5115 5145 1924 6839 * 48
+ 0 * * * * * * 9810 0 0
+
+V 49 3550 4941 6664 * 3192 6889 * 2376 * 2529 4043 * 5875 6553 * 6702 * 2096 5840 4677 49
+ 0 * * * * * * 9853 0 0
+
+A 50 3360 5331 * * 5264 5606 6438 2288 * 2705 6593 * 2814 6663 5570 6585 5718 2131 6991 6326 50
+ 71 5527 5232 1252 786 * * 9853 1083 0
+
+M 51 5465 * 5120 4305 2946 6316 6558 2654 4699 2894 4872 7063 * 5278 3341 5957 4431 3274 5575 4055 51
+ 134 4085 5060 2128 375 * 0 9827 1625 1178
+
+D 52 5667 6659 1911 4321 5591 * 5131 4746 4282 5830 6199 2660 6822 4853 3328 4110 3985 4934 7227 5397 52
+ 184 4984 3507 1866 462 823 1202 9729 1216 1607
+
+D 53 4100 * 4181 2219 * 3737 5252 4885 3500 5100 * 4691 3262 5467 3786 3547 4597 4973 * 5481 53
+ 84 4632 5966 1533 612 92 4019 9680 1253 2248
+
+N 54 4108 6912 2465 2772 6952 3642 4219 6770 3730 5818 6543 2915 5223 4069 4041 * 4680 5303 * 7066 54
+ 230 3092 5067 189 3026 0 * 9853 2689 1275
+
+G 55 5611 5727 2886 4047 * 1334 6471 6905 3980 6814 * 3465 6023 7062 4500 4792 4265 * 6554 5648 55
+ 209 2892 * 1456 654 0 * 9813 2535 1238
+
+N 56 4354 * 4750 2501 * 4914 4766 * 2402 5647 * 4607 * 2836 2656 5985 4039 * 6924 4895 56
+ 53 4796 * 2006 413 * * 9881 1297 0
+
+I 57 5466 5710 6836 5938 3667 * * 2610 5288 2680 5679 * * 5901 7155 * 5391 1424 6915 4034 57
+ 0 * * * * * * 9953 0 0
+
+P 58 4636 5935 * * 3978 7200 * 4559 * 959 4822 7021 7073 * 6711 * 4464 2863 5133 4476 58
+ 0 * * * * * * 9973 0 0
+
+M 59 4638 5418 * 6679 4049 * 6901 2919 * 1044 3818 * * * * * 6070 2786 * 6630 59
+ 161 6219 3444 0 * * * 9975 1186 0
+
+V 60 3898 5274 6693 5125 * 4201 6130 2570 6767 2724 5672 * 6379 4653 4414 5715 3766 2048 * 5750 60
+ 26 6883 6779 0 * * 0 9833 1000 2038
+
+Y 61 5830 6645 6765 3925 * 5785 4749 6427 2098 4704 * 5442 6109 3718 1680 4579 5809 4719 5737 5919 61
+ 79 * 4226 * * 589 1576 9800 0 2219
+
+Q 62 5161 6852 * 3734 6760 5754 4454 5818 4596 6642 5941 4738 * 2027 1637 3801 5207 5917 * 6673 62
+ 45 * 5029 * * 2265 337 9897 0 1903
+
+Y 63 3385 * 4782 5018 3325 6671 6011 5614 3473 3783 * 5082 3485 4772 3841 3751 4004 5698 6970 2839 63
+ 81 6727 4465 0 * 2033 404 9850 1000 1993
+
+R 64 3063 * 4816 4983 5771 5668 5502 6961 3149 5424 5602 3921 4918 5625 1457 5093 5587 6512 6849 4833 64
+ 77 6607 4578 1585 585 2775 228 9793 1000 2168
+
+H 65 3696 * 4201 4330 6836 4315 3639 5641 3401 4199 6811 4863 2810 5152 4537 3384 4531 4842 6909 3816 65
+ 26 5784 * 1614 571 1902 449 9788 1163 2419
+
+T 66 3262 * 4348 3766 * 2219 5709 6397 3396 6069 5141 4805 2317 6918 5172 3649 5098 * 7023 * 66
+ 538 3173 2320 1552 602 2750 232 9815 2055 2032
+
+Y 67 4311 6279 5507 4638 4830 4733 5462 3049 4947 2846 4708 4148 4004 * 4601 3547 3301 4633 5336 4775 67
+ 148 4585 4163 2090 386 1137 875 9585 1396 4201
+
+G 68 5205 5564 4195 3734 4754 2680 4333 5852 3896 4466 6671 3677 4834 3997 4825 3645 5925 * 3929 3911 68
+ 96 5296 4689 3577 126 1504 627 9828 1501 3368
+
+R 69 3040 * 3883 3375 * 3008 5704 * 3571 5684 * 5333 2454 4838 3385 3729 5581 4926 * * 69
+ 28 * 5691 * * 2654 250 9887 0 2909
+
+R 70 4619 6449 4143 5032 4219 1770 6728 5895 5213 4091 4672 3365 4680 * 3681 6371 * 4374 4717 4311 70
+ 61 4979 6688 305 2390 319 2334 9840 1353 2787
+
+L 71 4666 4766 4011 4284 4637 4317 5481 * 4508 2563 3834 * * 3854 4311 3879 3878 3908 5767 3756 71
+ 58 4982 6990 1513 622 301 2407 9962 1328 1380
+
+W 72 * * 5633 * 3834 6614 * 4114 * 2687 5013 * * * 6859 * 5231 5409 1068 3062 72
+ 40 5176 * 709 1365 937 1066 9958 1200 1056
+
+E 73 3249 5665 3537 2158 4594 3654 * 7193 5078 4944 5688 4851 * 4576 4858 3486 3784 4320 * 4929 73
+ 0 * * * * 0 * 9963 0 1000
+
+L 74 5802 5039 * * 1831 5394 * 3544 * 1564 4871 7188 4528 7015 * 5676 4669 4170 5947 * 74
+ 12 6956 * 0 * * * 10031 1000 0
+
+P 75 4257 5331 * 6681 5821 * * 4342 * 4473 5775 * 614 * * 5311 5577 3585 * * 75
+ 26 6801 6839 4755 54 * * 10031 1000 0
+
+A 76 2274 5953 * 7057 * 1137 * * 3357 5858 * 5622 * 5248 4506 4107 4962 6673 6721 * 76
+ 54 4778 * 1640 558 * 0 10018 1419 1000
+
+G 77 5589 6569 * 5281 5475 260 * * 5828 6721 * * * * * 5239 6388 6834 * 6466 77
+ 0 * * * * * 0 10018 0 1000
+
+L 78 3677 5908 5695 * 3625 3147 2834 5511 2907 4170 5299 6732 6388 4862 3132 4472 5746 4779 6855 4764 78
+ 14 6653 * 3459 138 * 0 10018 1018 1000
+
+L 79 3987 6153 * * 5807 5037 * 2657 6853 2810 3872 * 6882 5134 4321 5902 5249 1661 4611 6732 79
+ 2483 * 284 * * * 0 10018 0 1000
+
+D 80 * * 1181 1507 * * 4307 * * * * * 4244 4144 * * * 4399 * * 80
+ 705 2719 2091 0 * 50 4870 6702 1319 7758
+
+V 81 5122 6613 2608 1472 6381 4718 4930 * 5760 4741 * 4801 4668 4795 3568 5018 4451 6007 * 6600 81
+ 51 5209 7086 3383 145 404 2035 9936 1228 2068
+
+A 82 3047 6792 4494 3733 5358 4344 4441 4821 3665 4269 * 4178 1975 6838 6580 4653 4805 4249 7012 * 82
+ 0 * * * * 0 * 10043 0 1300
+
+G 83 4440 * 2243 3198 * 1457 5879 * 5142 7074 * 3308 * 6479 5046 4207 6514 6741 * * 83
+ 26 6781 6795 1000 1000 * * 10031 1061 0
+
+E 84 4575 * 3676 474 * 5911 * * 5102 6530 6949 6679 5613 6685 * 6687 5175 5815 * * 84
+ 198 2965 * 1469 647 0 * 10021 2921 1000
+
+P 85 4958 * 2626 4575 * 6010 6514 5768 5849 5797 * 4347 4829 5436 7057 1519 2322 6897 6439 * 85
+ 33 * 5486 * * * * 10031 0 0
+
+P 86 3021 6610 5388 * 4608 5738 6780 3643 6621 2079 5724 5232 2401 7028 5196 4315 4733 3944 * 5358 86
+ 0 * * * * * 0 9954 0 1128
+
+H 87 3902 7055 4428 1860 4502 4669 4028 4878 5233 3017 6589 * 5821 5155 3629 5392 5280 4362 7109 4947 87
+ 11 * 7051 * * * 0 9954 0 1128
+
+L 88 3330 * 2633 1990 6056 4894 6617 6980 4340 4746 * 5328 * 2705 * 5092 4240 3763 * * 88
+ 0 * * * * 1839 473 9954 0 1226
+
+T 89 994 3505 5859 * * 4680 6415 6911 * 6342 * 5823 6691 6846 7028 3777 2821 3988 * * 89
+ 41 5156 * 1870 461 * 0 9954 1167 1128
+
+A 90 784 6621 * * 6860 4902 * 3842 * 2514 5432 * * * * * * 3336 * * 90
+ 13 * 6756 * * 0 * 9954 0 1128
+
+A 91 2812 5703 6462 3965 7114 * 5123 3669 3279 3069 4760 7160 6115 5248 2799 4243 7193 2947 * 6859 91
+ 0 * * * * 0 * 10021 0 1000
+
+R 92 5906 6734 5892 4907 6615 6712 * 6576 5305 6469 * 5726 7411 5870 410 * 4281 * * 6535 92
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+//
+�HHsearch 1.5
+NAME ba48b3cd7ebd29a9e2e367a37ac501cf
+FAM
+FILE ba48b3cd7ebd29a9e2e367a37ac501cf
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:45:49 2013
+LENG 110 match states, 110 columns in multiple alignment
+FILT 149 out of 1021 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCHHEE
+ECCCCCCCCC
+>ss_conf PSIPRED confidence values
+9976999908989788667644553899999999999877559997399999345765267988999529979960799999999999986699554405
+1377878779
+>Consensus
+xxxxxIxVCxxxrxxgxxxxxCxxxGxxxlxxxlxxxlxxxxglxxxvxvxxxxClgxCxxgPxVxIxpxxxxyxxvtxxxvxxilxxxlxxgxxvxxxx
+xxxxxxxxxx
+>ba48b3cd7ebd29a9e2e367a37ac501cf
+AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGSMNACMMGPVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEPVERLV
+ISKGKPPGMF
+>gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54]gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54]
+---TVIYIGAA-----T---CGRSAGALKTKKAFETELAKQ-NVK--AEIVEVGCFGPCYTEPLICIArPgkTKLFFQNVDGERAEELVTGYLqTGEIPR
+DYLFAAV-------
+>gi|335048061|ref|ZP_08541081.1| protein HymB [Parvimonas sp. oral taxon 110 str. F0139]gi|333757861|gb|EGL35419.1| protein HymB [Parvimonas sp. oral taxon 110 str. F0139]
+---------------------------------------------------------------------------MGYIENLDKIKNKKypeMLE-IKSQ
+DEKYi-V-------
+>gi|338811198|ref|ZP_08623428.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetonema longum DSM 6540]gi|337276809|gb|EGO65216.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetonema longum DSM 6540]
+--------------------ACHIKGSYNVLNSLQQLREEY-GLADQVEINAIFCLNHCTEAVSVQID--DGAVHSVSGSTARDFFIKNILP--------
+----------
+>gi|325281878|ref|YP_004254420.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM 20712]gi|324313687|gb|ADY34240.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM 20712]
+--------------------SCYSRGNNVHLEVIKKYIAEN-HLEAEISFSGHLCEELCSSGPILRID--EKVYKEVNLSGLYKILQEEFPI--------
+----------
+>gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16]gi|123467|sp|P22317.1|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alphagi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16]
+-GKYRIYLCNS-----V---IAKINGYQAVREALERETGIRFGEtdpNGMFGLFDTPCIGLSDQEPAMLID--KVVFTRLRPGKITDIIAQ-LKQGRSPA
+EI-----------
+>gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255]gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255]
+-DEeippsLTIRVCDS-----L---SCELAGAQDLLFKLGEKYNGggK------VRVVRAPCMGRCDTAPTLEIG--HNHIDNANEEKVEKAIIT-KDFH
+PKIPNY-----------
+>gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
+----RyhLQVDTN-----I---PATLMgageILDHLEKTLNIRAGET-TPDGLFTLSEVECLASCGTCPVIQVN--DVYYENMTREKVDSLLDS-LRKG-
+----------------
+>gi|17230086|ref|NP_486634.1| hypothetical protein alr2594 [Nostoc sp. PCC 7120]gi|17131687|dbj|BAB74293.1| alr2594 [Nostoc sp. PCC 7120]
+-TKHTLFVCKSCHRSSEELAENQPCDGSILLDKITSLYSEK-FATEELEIQSVGCLWACSRGCVVALSsPEKptYLLVDLPPdaENASALLE--------
+---------------
+>gi|163749625|ref|ZP_02156872.1| precorrin methylase [Shewanella benthica KT99]gi|161330735|gb|EDQ01672.1| precorrin methylase [Shewanella benthica KT99]
+--LYQLIVCEGG--------RCEIPGQAGLAHRIRGLLKES-GFskgVNRIKVTRSHCLGCCRKLVPMVIYQgksqtrisenHALWLQkvdRLTDEQWQQ
+VFH-SLVEDSSVKACLRA--------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 1840 * * * * * * * 2679 * * * 2471 3541 * * * 1745 * * 1
+ 0 * * * * * * 3600 0 0
+
+E 2 2663 * 4177 2993 * 1331 * * * * * * 3676 * * 2683 * 5068 * * 2
+ 0 * * * * * * 5414 0 0
+
+F 3 3794 * 3678 3283 5616 4392 4871 * 2043 5660 * 5828 * 5232 1886 * 3885 * * * 3
+ 51 4852 * 2303 327 * * 7113 1483 0
+
+K 4 3576 * 6191 4903 4171 5666 2329 4005 3057 3940 * 5155 4795 5648 4129 4628 5316 4881 * 3231 4
+ 139 3449 * 0 * * * 7560 1576 0
+
+H 5 5507 5485 7288 4138 6902 * 2710 4640 3252 4155 5548 * * 3482 2876 6138 2857 3442 * 4688 5
+ 75 4297 * 1318 740 * * 7983 1478 0
+
+V 6 6381 7045 * * 5452 * * 1416 * 2171 * * * 6358 * * * 1520 * * 6
+ 0 * * * * * * 8048 0 0
+
+F 7 5381 5759 * 6095 2525 5657 4788 4356 4198 2134 5925 * * 4122 3567 4070 4441 4284 5806 4353 7
+ 0 * * * * * * 8048 0 0
+
+V 8 5577 5636 * * 5960 * * 2250 6278 3700 * * 7177 7019 * * * 707 6994 6994 8
+ 0 * * * * * * 8048 0 0
+
+C 9 * 190 * * * 4285 6968 * * * * * * * * 4708 6202 * * 6358 9
+ 18 6358 * 2322 322 * * 8048 1037 0
+
+V 10 4002 5470 4249 4009 6242 4946 6193 4458 7118 4513 3736 3531 * 4058 3939 4122 2348 3267 * * 10
+ 58 * 4674 * * * * 8048 0 0
+
+Q 11 4204 5220 4484 * * 1500 4328 * 5233 5289 * 3428 * 4839 * 2349 3527 7005 * * 11
+ 958 * 1043 * * * 0 8025 0 1309
+
+D 12 4055 2292 4857 * 4753 2918 * * 4870 4089 5920 4206 2617 5710 4381 3476 5636 * 5154 * 12
+ 518 * 1728 * * * 0 7279 0 4859
+
+R 13 4818 5092 * * * * 5419 * 4276 4114 * * * * 676 3448 3557 * * * 13
+ 1227 * 804 * * * 0 6701 0 5575
+
+P 14 2276 * 3072 4214 3822 * * * 4043 3911 * * 2697 4038 2834 * 3887 * * * 14
+ 0 * * 0 * 4342 73 4909 1004 6435
+
+P 15 3447 * 4353 4070 * 3440 * * * * * 4523 2234 4332 3184 2424 4137 4356 * * 15
+ 72 * 4353 * * 4127 85 5537 0 6267
+
+G 16 * * 3406 3998 * 747 4510 * * 4630 * * 4655 * 4581 4441 4823 * * * 16
+ 307 * 2384 * * 689 1397 5973 0 6110
+
+H 17 4509 * 4965 3079 * 6646 5144 4994 4082 5206 4709 6683 * 5485 5342 3230 1633 3280 * 5440 17
+ 1701 * 530 * * 3056 185 7642 0 3684
+
+P 18 3725 * 3407 * * 4731 4491 * * * * 4547 1922 2809 2479 * 4784 3593 * * 18
+ 414 * 2004 * * 5566 31 5906 0 6128
+
+Q 19 4373 * 2642 * * 4512 * * 1615 4404 * * 4276 3290 3198 4108 * * 4232 * 19
+ 175 * 3128 * * 3942 97 5526 0 6274
+
+G 20 2146 * 4413 4492 * 1903 * * 4824 * * * 2449 * 4565 3874 * 3533 * * 20
+ 193 2996 * 0 * 197 2971 5878 1243 6137
+
+S 21 2767 2941 4365 5490 * 3745 * 5933 4111 5944 6196 4079 4076 * 4048 2712 3431 6022 7160 5229 21
+ 39 * 5242 * * 0 * 8435 0 2147
+
+C 22 5770 373 5324 6791 6859 3760 * 6685 7046 6597 6863 * * 6597 * 4830 6433 * * * 22
+ 50 5357 6685 403 2035 437 1936 8503 1243 1240
+
+A 23 3316 6632 5203 4036 4970 3225 3590 3649 3906 3652 4895 6864 * 5408 3604 4726 4255 5296 * 3476 23
+ 70 4912 6147 0 * * 0 8536 1374 1109
+
+Q 24 2321 * 4774 5337 5968 4844 * 3962 2966 3298 4813 6005 6626 4798 4456 3129 5738 3204 * 6679 24
+ 9 7258 * 634 1492 458 1879 8527 1223 1261
+
+R 25 2938 4536 5576 5880 * 4923 4588 * 2823 4065 3438 4468 5719 4828 2614 3155 6311 4921 * * 25
+ 74 5960 4891 390 2079 0 * 8552 1199 1014
+
+G 26 * * 4446 4377 * 350 6678 * 5196 * * 6261 4962 * 6155 6698 7006 * * 7033 26
+ 74 6036 4853 0 * 527 1709 8531 1081 1383
+
+S 27 1890 6213 * 6902 * 1822 7339 6840 6854 * * 4159 * 5896 7053 1926 5258 7223 7314 5692 27
+ 23 5973 * 0 * 196 2974 8529 1073 1457
+
+R 28 3209 * 3559 3010 6760 5142 * 6084 3005 4658 4672 5047 4068 2655 3609 4885 5600 5705 * 5440 28
+ 12 6969 * 2322 322 * 0 8565 1000 1000
+
+E 29 2674 * 3302 2598 * 5486 5344 4796 3986 3797 6153 5181 4693 3680 3829 3616 5636 7076 7053 6216 29
+ 0 * * * * * 0 8565 0 1000
+
+V 30 4734 * * * 4468 6892 6057 2366 * 1306 7165 5176 * * * 6854 4085 2423 * 7199 30
+ 0 * * * * * 0 8565 0 1000
+
+F 31 3447 6038 * 7194 3622 * 5000 3688 4317 1817 4459 * * 6099 5283 4404 5795 4070 4431 3246 31
+ 0 * * * * * 0 8565 0 1000
+
+Q 32 2894 * 2458 2667 7161 4452 4712 7165 3444 5842 * 3953 6220 3528 4112 4511 4996 6088 * 7268 32
+ 0 * * * * * 0 8565 0 1000
+
+A 33 1747 6908 4520 3446 5679 7220 4063 4546 4233 3816 * 6225 * 4963 4300 3680 4401 5181 * 4155 33
+ 13 6852 * 0 * * 0 8565 1000 1000
+
+F 34 4285 7198 * 5923 2895 6935 * 2614 * 1034 4815 6618 * * 6989 6852 * 3860 * * 34
+ 52 * 4828 * * * 0 8565 0 1000
+
+M 35 3621 6868 4912 2684 * 5645 7805 4922 2412 5089 6375 5756 * 3120 2485 6277 4505 4136 * 6870 35
+ 20 * 6176 0 * 271 2548 8489 1004 1323
+
+E 36 3400 * 3494 2313 6612 4228 6826 * 2926 5854 * 4041 * 3122 3478 3953 4125 7200 * * 36
+ 8 7540 * 1585 585 * 0 8553 1000 1111
+
+K 37 3160 5496 * 2335 4303 7445 4800 4499 4137 2380 7026 * * 7339 3269 6369 4365 3907 6534 5229 37
+ 157 * 3277 1000 1000 1622 567 8553 1000 1111
+
+I 38 3398 5285 6478 6795 6306 * * 2593 * 1431 6099 * 5229 5526 6870 5139 5191 2570 * 6118 38
+ 68 4722 6992 0 * 3447 139 8478 1245 2092
+
+Q 39 2463 6767 4007 3010 * 3514 5499 5836 2343 6144 6667 4968 5012 5611 3222 4696 5535 6058 6771 * 39
+ 63 6711 4907 0 * 2241 343 8376 1037 2358
+
+T 40 3194 6074 4298 1950 6643 5058 * 4233 3465 4301 7152 4991 6001 3886 4260 4027 4711 4097 * * 40
+ 147 4905 3974 1220 809 1692 534 8442 1318 2323
+
+D 41 3671 6953 3402 4363 5660 3929 3935 * 3352 3398 5373 3746 5863 4469 3189 3839 4691 6858 5445 5988 41
+ 2068 7200 406 0 * 3282 157 8339 1000 2438
+
+P 42 3216 * 5383 2927 3321 * * 3715 * * 5407 * 1296 * * 4353 * 4189 5256 * 42
+ 82 5108 5256 0 * 225 2791 5344 1000 6691
+
+Q 43 4611 * 3488 3720 * 1133 5631 6841 5542 5134 * 3130 4944 4081 5720 6574 6713 6114 * * 43
+ 58 5363 6045 1000 1000 2343 317 8397 1112 2215
+
+L 44 3926 5269 5029 3473 5691 5536 5496 3153 4620 1439 4814 6996 5876 5619 6105 7397 * 3862 6086 5790 44
+ 605 1845 3964 1682 539 1722 521 8458 3400 2097
+
+F 45 3225 * 1986 2953 6097 3938 6975 6576 3275 5640 * 4727 4894 4228 7092 3490 5719 5195 6324 6636 45
+ 129 6035 3837 3316 153 1550 603 8454 1114 2444
+
+M 46 3320 5837 2640 3880 7078 2031 6045 5820 4295 6929 5471 3348 5289 5001 5460 3810 5791 6268 * 7104 46
+ 145 4595 4202 1764 503 2170 363 8459 1463 2540
+
+T 47 3936 * 3869 2741 * 3977 3976 7038 2947 4669 4861 4742 5409 3745 2973 4325 4522 5977 * 7290 47
+ 22 6812 7279 0 * 298 2423 8432 1000 2650
+
+T 48 4257 5941 * * 3097 * * 2089 * 2932 * * * 6805 * * 5198 1385 6862 5590 48
+ 70 7370 4589 1000 1000 1340 725 8540 1003 1316
+
+V 49 4292 * 4119 2494 * 5060 4919 5706 3251 4055 7347 4502 * 4104 3381 3463 3073 5174 6826 5976 49
+ 0 * * 0 * 237 2720 8453 1245 1540
+
+I 50 5052 6121 * * 5540 * * 1923 * 2387 6100 * 5972 * 4994 7348 4650 1579 5544 6047 50
+ 18 * 6360 * * * 0 8546 0 1017
+
+T 51 5732 * 5013 2681 5961 5114 5151 4059 3272 4805 * 5178 * 3873 3549 3554 3591 2681 5918 * 51
+ 0 * * * * 1176 843 8531 0 1137
+
+P 52 3879 * 5789 3020 6038 2987 5130 6212 3203 5580 6796 7306 3547 4815 2700 4575 3236 5712 * 5624 52
+ 9 7307 * 0 * 0 * 8554 1006 1042
+
+T 53 3933 3559 7312 * * 7082 5954 3944 4908 5237 5049 5655 * 7309 5272 3591 1697 2217 7302 * 53
+ 19 * 6277 * * * * 8569 0 0
+
+G 54 4793 * 5143 3399 4331 1721 5402 * 4349 5538 7207 4312 3812 5576 4203 3097 4213 7379 * 6254 54
+ 13 * 6836 * * * 0 8553 0 1056
+
+S 55 6694 163 * * * * 4964 * * * * * * * * 4266 * 6248 * * 55
+ 0 * * * * * 0 8523 0 1177
+
+M 56 4913 * * 5935 3681 * 7201 3741 * 1462 2666 4498 * 3791 5153 5612 5662 3682 * 7047 56
+ 0 * * 1585 585 922 1082 8523 1056 1177
+
+N 57 4771 7043 3865 4507 6076 827 6307 * 4936 * 6085 3743 * 5421 4847 4348 7301 * 6668 7233 57
+ 19 * 6273 * * * 0 8539 0 1042
+
+A 58 3166 4409 * 4939 4095 3777 5148 5055 4458 2762 4656 4108 4486 4066 3700 4714 4898 4170 7343 6157 58
+ 87 4848 5401 1872 461 * 0 8523 1245 1177
+
+C 59 * 167 6913 6563 * * 5213 * * 6684 * * * * * 6634 6686 6229 * 5591 59
+ 9 * 7297 373 2134 981 1019 8358 1374 1795
+
+M 60 3150 6180 2588 4262 5173 4008 4766 * 3050 * 6270 4159 6858 4374 3775 3543 4195 5684 4764 6349 60
+ 60 4614 * 1574 591 * 0 8414 1331 1422
+
+M 61 4350 6028 3739 4595 5020 7497 5194 4838 3523 3477 4794 3710 * 3188 3075 3493 4297 5869 6812 4742 61
+ 0 * * 1676 541 * 0 8414 1245 1422
+
+G 62 1939 * 6065 2884 6557 1246 * * 6159 6675 * * 4284 * 6933 4295 6877 6178 * * 62
+ 0 * * 1253 785 761 1287 8414 1149 1422
+
+P 63 4854 3835 * * * 5341 * 7247 * 5819 * * 424 * * 6097 5335 4016 * * 63
+ 15 6619 * 0 * 783 1255 8512 1035 1129
+
+V 64 3396 6205 * * 5022 6839 * 3257 7161 3220 4449 2647 5380 * * 4347 3221 2115 * 5937 64
+ 8 7460 * 0 * * 0 8542 1000 1008
+
+V 65 3502 6877 * * 5027 * * 2764 * 2904 3453 * * * * * * 999 * * 65
+ 30 5587 * 0 * 0 * 8542 1211 1008
+
+V 66 3424 6528 5147 3563 6095 6441 4798 3891 3852 2966 3662 6761 * 4615 3921 4368 3992 2931 6353 7233 66
+ 12 6896 * 0 * * * 8569 1037 0
+
+V 67 5028 * 6364 5838 4434 7213 * 1458 * 3430 5988 * * * * 5895 7054 1474 * 5065 67
+ 274 7328 2586 2807 222 * * 8569 1000 0
+
+Y 68 4366 * 3644 4262 5289 4548 4342 5471 4940 4549 4385 2988 * 3528 3684 4126 4732 4616 6678 3059 68
+ 973 2194 1877 154 3304 1987 419 8325 2975 2375
+
+P 69 4586 * 3323 4408 * 4551 6537 * * 5118 6808 5510 766 4964 * 4645 4712 * * * 69
+ 487 2425 3316 1937 437 1460 652 8057 2420 3850
+
+D 70 4403 * 1655 3295 * 2370 4287 * 3981 * * 4369 4943 4269 4007 5897 6198 * * * 70
+ 192 3269 5595 2393 305 0 * 7829 1840 3371
+
+G 71 4572 * 3143 3574 7070 1551 4821 * 3302 * 7451 3506 5247 5206 3925 4584 * * 6077 7425 71
+ 221 3435 4329 1512 623 * 0 8526 2030 1184
+
+V 72 5016 7298 4192 3166 * 5425 4380 3696 3496 3640 * 4140 6681 4634 4448 7231 3994 2711 5217 3684 72
+ 7 7603 * 585 1584 223 2806 8518 1559 1741
+
+W 73 5747 6727 7168 6358 3909 * 7158 3058 7075 2795 4094 5740 4518 5900 7446 6363 3957 2794 2443 4068 73
+ 65 4999 6273 1118 891 * 0 8539 1299 1042
+
+Y 74 * 6067 * 7217 2659 * 4511 3482 * 3331 5129 * * * 6920 * * 4041 * 1030 74
+ 19 6251 * 0 * * 0 8523 1083 1177
+
+G 75 4114 7047 4502 3573 6304 1859 4058 * 3874 5454 7202 6247 4474 4513 4509 3584 3728 5386 7538 5254 75
+ 39 5214 * 1294 756 0 * 8523 1299 1177
+
+Q 76 6350 5509 3950 4142 6044 3097 4273 * 3150 * 6230 2582 4951 4116 2919 4287 6732 4672 * 4452 76
+ 47 6268 5716 1642 557 * * 8579 1135 0
+
+V 77 3178 5129 * * 4964 5840 * 3348 7246 2604 3629 6293 6207 6193 5591 * * 1320 * * 77
+ 38 5660 7369 0 * 527 1709 8550 1282 1143
+
+K 78 4804 * 2718 4769 6826 5858 7239 * 3729 6140 6511 3522 6679 5009 4429 2898 1670 5984 * 8064 78
+ 28 7264 6269 1585 585 859 1156 8563 1000 1073
+
+P 79 2998 6445 5151 3141 6609 5091 * 4749 4144 3423 6268 7051 1683 5878 5801 4622 4717 4333 * * 79
+ 89 4067 * 1028 972 1578 588 8553 1703 1124
+
+E 80 2730 * 2649 1723 * 4502 6896 * 4345 6806 * 4668 5935 3702 4771 3860 5014 7110 * * 80
+ 0 * * * * * 0 8562 0 1056
+
+D 81 3830 6836 2299 3662 7500 5081 * 6789 2576 6703 6155 3635 * 3668 3361 4069 4515 4524 * * 81
+ 53 5068 7350 0 * * 0 8562 1252 1056
+
+V 82 2077 * * * 6058 * * 2658 * 2244 5512 * 5808 * * 6961 4856 1846 5802 * 82
+ 13 * 6836 * * * 0 8553 0 1118
+
+D 83 3655 6618 3161 3254 * 4574 * 3989 2919 4605 5075 5618 3177 5012 3474 4609 5963 4149 * 5598 83
+ 0 * * * * 1394 691 8523 0 1238
+
+E 84 2993 * 3407 1944 7225 4463 * * 3453 4593 6047 5262 7051 3843 3388 4587 4547 5254 * 6513 84
+ 17 * 6445 * * * 0 8553 0 1118
+
+I 85 4077 * * 6970 4988 * * 1387 5612 1684 5869 * * 6846 6208 * 5181 3171 * 6761 85
+ 0 * * 2235 345 299 2419 8551 1140 1249
+
+V 86 4274 * * * 3408 * * 2212 8010 1560 5051 * * * 8290 * 5463 2100 * 7418 86
+ 19 * 6251 2322 322 0 * 8570 1000 1000
+
+E 87 3448 * 2541 2350 * 5020 5784 7144 4047 5152 7102 5338 * 3427 3349 3889 3998 5922 * 5262 87
+ 29 * 5671 * * * 0 8544 0 1056
+
+K 88 2951 * 3828 2378 5841 3963 5476 5919 3189 6133 * 5594 7052 4318 3443 3091 3978 7388 * 7297 88
+ 283 * 2488 * * 0 * 8358 0 1227
+
+H 89 3752 * * 3745 6333 5240 1637 5141 4489 2912 6622 5189 * 5732 6375 5449 4170 4524 * 3401 89
+ 132 4481 4556 1052 950 328 2298 8192 1461 2481
+
+L 90 5061 * * 6831 2931 6772 * 2433 4730 1626 4000 5776 6402 6736 4870 * 5010 3338 * 6956 90
+ 41 6873 5695 0 * 251 2645 8270 1004 1737
+
+K 91 3064 * 4548 4257 6210 4494 5453 3732 3406 2829 4604 5728 6314 5118 2895 4587 5586 3378 * * 91
+ 61 5943 5309 2853 215 * 0 8157 1198 1216
+
+G 92 3210 5300 3626 3398 5380 2964 5864 5515 3228 * * 3353 5465 4140 3505 3443 6062 5603 * * 92
+ 50 6740 5343 0 * 463 1866 8066 1000 1405
+
+G 93 3752 6311 3683 4899 * 844 4199 * 6022 * * 4029 * 4707 5481 * 4764 5966 * * 93
+ 159 3258 * 1932 438 564 1629 7138 1584 1333
+
+E 94 3866 6293 6612 2243 * 6155 5497 5892 3562 6597 * 6020 3401 4158 2242 3416 6743 3864 * * 94
+ 186 5487 3345 607 1541 887 1123 7094 1066 1056
+
+P 95 5026 * 5259 3780 6087 4219 6070 4099 4289 3326 5977 * 2027 5174 3747 3516 5811 3194 * * 95
+ 0 * * * * * 0 7541 0 1564
+
+V 96 3841 5014 4363 5554 * * 5714 2732 5960 3174 * 5984 4363 7060 5159 5591 6460 1318 * * 96
+ 31 * 5533 * * 361 2176 7541 0 1564
+
+E 97 2388 * 3681 2171 6059 5247 * 6164 3981 6004 * * 3568 3723 3571 3238 6242 6465 * * 97
+ 66 4486 * 2242 343 * 0 6978 1167 1187
+
+R 98 3538 * 2497 2118 * 4284 6561 5961 4022 5793 * 4016 4647 5229 2999 5617 4013 * * 6253 98
+ 22 * 6016 * * * 0 7348 0 1187
+
+L 99 6509 4188 * 5318 4209 5264 3895 4147 4910 1724 5255 6124 5923 6106 * 4739 5911 3928 3961 3136 99
+ 76 4288 * 261 2594 1455 655 7334 1190 1251
+
+V 100 3254 * 5951 3958 5877 5006 4532 2775 5731 1825 5753 5611 * 5923 4247 * 6134 3356 5617 4805 100
+ 19 6219 * 1944 434 500 1771 7066 1068 1132
+
+I 101 5881 6080 4807 4081 5665 5426 4555 2792 5032 3123 5758 * 4737 * 3283 4895 * 2967 5806 2643 101
+ 381 2108 * 684 1405 * 0 6977 1797 1000
+
+S 102 3610 5477 3707 * 5441 * 5552 5066 4593 4059 5368 5465 1886 5473 3935 4433 2606 5178 * * 102
+ 0 * * 2000 415 0 * 6309 1000 1184
+
+K 103 4111 * 3045 2550 * * * 4735 4841 * * 3662 * 3148 4036 3594 3263 3634 4119 * 103
+ 66 4482 * 1585 585 * * 6054 1000 0
+
+G 104 4159 * 4046 2637 * 3069 * * 3915 * 3775 * 2326 * 3793 2376 * * * * 104
+ 0 * * * * * * 4784 0 0
+
+K 105 * * * * * * 2461 * 1578 * * * 2700 2574 * 2630 * * * * 105
+ 0 * * * * * * 3143 0 0
+
+P 106 * * * * * 2006 * * * * * * 413 * * * * * * * 106
+ 0 * * * * * * 2504 0 0
+
+P 107 * 2006 * * * * * * 1940 * * * 1028 * * * * * * * 107
+ 0 * * * * * * 2504 0 0
+
+G 108 * * * * * 552 * * * * * * * * 1652 * * * * * 108
+ 0 * * * * * * 1989 0 0
+
+M 109 * * * * * * * * * * 0 * * * * * * * * * 109
+ 0 * * * * * * 1000 0 0
+
+F 110 * * * * 0 * * * * * * * * * * * * * * * 110
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME bbd36c9292c799cc4a4733df8189699f
+FAM
+FILE bbd36c9292c799cc4a4733df8189699f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:48:50 2013
+LENG 184 match states, 184 columns in multiple alignment
+FILT 113 out of 1318 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEE
+EECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEC
+>ss_conf PSIPRED confidence values
+9898840499980499799999799998139999999899998269999379836899838889988999999993898788515477606899953199
+963799699999489987457999999689997218999668846999908899988999999996997267878848999889
+>Consensus
+xlxxPxxlxxxxxxxxxixlxWxxxxxxxxxyxvxxxxxxxxxxxxxxxxxxxxxxxxixxLxpxtxYxxxvxaxxxxxxxxxxxxxxxxxxxxPxxlxx
+xxxxxxxixlxWxxxxxxxxxYxvxxxxxxxxxxxxxxxxxxxxxxxxxxxLxpxxxYxxxVxaxxxxgxxxxxxxxxxxxxxT
+>bbd36c9292c799cc4a4733df8189699f
+GLDSPTGFDSSDITANSFTVHWVAPRAPITGYIIRHHAEHSVGRPRQDRVPPSRNSITLTNLNPGTEYVVSIIAVNGREESPPLIGQQATVSDIPRDLEV
+IASTPTSLLISWEPPAVSVRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTGRGDSPASSKPVSINYKT
+>gi|242004913|ref|XP_002423320.1| conserved hypothetical protein [Pediculus humanus corporis]gi|212506339|gb|EEB10582.1| conserved hypothetical protein [Pediculus humanus corporis]
+-IPSPPEIILQALNSSEIEVRWNLPSkeIKVIGYKIFYRKQNSS-QVGPIIVPADTKKYIVAGLEPETWYEITVLGFTSEDDGETGVSfmhtlsnvgssn
+kmmsEFPSIPEPPVSLEAEPISSRAINLTWSISQQatpgliNIKHFTICFNPVQNSLDKNAVvrCVKSLENKILISGLNPHTLYEFKVRSHNSNEKYSAF
+SQTI------
+>gi|14861868|ref|NP_149090.1| receptor-type tyrosine-protein phosphatase V precursor [Rattus norvegicus]gi|2499757|sp|Q64612.1|PTPRV_RAT RecName: Full=Receptor-type tyrosine-protein phosphatase V; Short=R-PTP-V; AltName: Full=Embryonic stem cell protein-tyrosine phosphatase; Short=ES cell phosphatase; AltName: Full=Osteotesticular protein-tyrosine phosphatase; Short=OST-PTP; Flags: Precursorgi|725329|gb|AAA63911.1| protein tyrosine phosphatase [Rattus norvegicus]
+--GPLLSVNVSSHGkSTSLFLSWVAAELGGFDYALSLRSVNSSGSPEGQQlqAHTNESGFEFHGLVPGSRYQLKLTVLRPCWQNVTITLTARTAPTVVRG
+LQLHSAGSpARLEASWSDAPGDQDSYQLLLYHLESQTLACNVSVSPDTLSYSFGDLLPGTQYVLEVITWAGSLH--------------
+>gi|317048328|ref|YP_004115976.1| hypothetical protein Pat9b_2108 [Pantoea sp. At-9b]gi|316949945|gb|ADU69420.1| Protein of unknown function DUF1983 [Pantoea sp. At-9b]
+-----------venltiintNSETVQVTAKWETATtTKKLTFELTVYTEAGTVVKSYET---EAFTYDFYGLDAG-SYTLGVRGRNSNGMKgAETQVSLV
+iGAPSAPTFIQWT-PGIFSADIVPVMNVTatTDTSFEFWYTgEVQASSVASVEDEAQflgRASQWTLHGLKADTTYYMYVRTKNAFGVSAFVE-------
+--
+>gi|326203258|ref|ZP_08193123.1| S-layer domain-containing protein [Clostridium papyrosolvens DSM 2782]gi|325986516|gb|EGD47347.1| S-layer domain-containing protein [Clostridium papyrosolvens DSM 2782]
+-LSPPANLSFNIISKTEVELTWDDTSSMEAGFIVEKKIGLLSQWYQISQLEPNVTKYNDKWISSTEPTFYRIKAFDRSTAVSYSNEVQLSLdaPEVPSNL
+QTSVLSTNDVKLSWKDNSSTEEGFIIEAKQLY---LFREIgRVDSNVTTFIYHDAIPGRTMTYRIRAVKGLVQSNPSNEVATVTLV-
+>gi|297570154|ref|YP_003691498.1| hypothetical protein DaAHT2_2214 [Desulfurivibrio alkaliphilus AHT2]gi|296926069|gb|ADH86879.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2]
+---APRALAAEA-GDRVVELRWQPPREIPAlPaevsaelrYQLYRSRDGKDF--TALATT-AELHHLDREVVGGRTYYYRVRAMAVLGetrvAGPVGATV
+SVtardlTPPTAPLLEAAVP-VREGVRLLWEMPDDrRIAEFIVLRRLPGEDEGREIGRQRAPALSHLDRHPPAEADvWYYRLVAVDVEGNRSE-PGNELR
+FRR-
+>gi|301627360|ref|XP_002942842.1| PREDICTED: interferon alpha/beta receptor 1-like [Xenopus (Silurana) tropicalis]
+GRPYPENVTM-EALNTNYMLKWDWdysQHPNVTfsve----NNSEIWPGKWNQVQGcENISRRNCDVSgI-YIYGKYNFRVAASLDNNNRTLSRAlrfnp
+EKDTVIGPPSNVStel---YGT-KLHVNVLKVEAFhnddlknycDWEYNLIYWKDSa-S---DReeKTLNEKVGRFTI-EVEASTTYCLTVRVV------
+-------------
+>gi|194207920|ref|XP_001501538.2| PREDICTED: ephrin type-B receptor 2 [Equus caballus]
+---GTFKANQGDEACAHCPIN-SRTTsegATNCVCRNGYYRADLD--PldmpcttipsapQAVISSVNETSLMLEWTPPRDSggredLVYNIICKSCgSG
+RG--------------------------------------------------------------------------------------------------
+-----
+>gi|338710274|ref|XP_001917456.2| PREDICTED: myosin-binding protein C, fast-type-like [Equus caballus]
+--DPPEAVRVTSVGEDWAVLVWEPPKydggqplteqpkirlprhlretyvrkvGEHLNLVIPFQGKPRPQVVWTKGgAPVDTSRVHVRTSDFDTVFFVRE
+AARSDSGEYELSVQienmkdtatiriRVVEKAGPPEHVMVKEVWGTNALVEWQPPKDdgnsEITGYLVQKADKKTMEW-FTVYEHNRHTCCTVSDLIMGN
+EYYFRVYSENFCGLS-------------
+>gi|89891172|ref|ZP_01202679.1| extracellular ribonuclease [Flavobacteria bacterium BBFL7]gi|89516484|gb|EAS19144.1| extracellular ribonuclease [Flavobacteria bacterium BBFL7]
+----------------------------------------------------------------------------------------SGTlfPTLSgty
+VDINGNTIVDAGDEIQYTYDIANigTTTlYNLR--------ATAPLGTFNPGNQVAslAAGQSlnnPFGTFTYVLTAADATNSCGCITNQLLLA---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+
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+
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+Q 47 3689 4238 5096 3417 6513 5064 4883 4039 4394 4289 * 5076 3700 4222 4069 3511 3964 3607 5087 5095 47
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+
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+
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+S 133 5119 6435 3016 2734 5543 3104 6417 4960 3290 6351 6485 4842 4550 6439 4586 2709 4783 5237 5578 6491 133
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+F 138 4728 6894 5741 4993 3989 4728 6611 3207 4214 3462 5584 5160 6501 5519 3822 4124 4185 2645 5757 3369 138
+ 107 4608 5034 321 2324 2026 407 10859 1672 1639
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+T 139 5095 * 4724 3364 4617 5921 5547 4490 3651 4460 * 3089 3788 5813 3862 3319 3411 3557 * 4975 139
+ 29 6506 6821 1982 421 994 1007 10818 1226 2071
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+V 140 3436 5689 4620 4292 4448 5204 6686 2703 6575 2712 5238 4611 6812 6555 5742 4444 3401 2841 * 6457 140
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+
+S 143 4117 * 3391 3809 6688 3766 5106 6578 3794 6915 * 3332 3609 4334 4408 2819 2803 * * 6705 143
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+A 147 3604 4040 * 5551 2502 5588 5101 4711 * 4063 * 6883 * 6634 6554 5723 4650 3021 4420 1981 147
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+
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+ 0 * * * * 0 * 10190 0 2262
+
+K 176 4253 6437 3607 3285 * 4708 5069 4908 3832 4148 * 4286 4541 4657 4200 2910 3488 3548 5867 6604 176
+ 0 * * * * * * 10239 0 0
+
+P 177 3074 * 5095 4017 5075 5827 * 4436 4402 5123 * * 2796 4007 5851 2702 3309 3974 * 3661 177
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+
+V 178 3427 5103 * 4858 4509 4936 5905 2783 3715 2442 5209 5859 6058 5115 5853 5997 * 2254 6175 * 178
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+ 0 * * * * * * 10001 0 0
+
+I 180 3041 4811 * * 4892 * * 2349 * 3868 4316 * 4699 * 5822 4823 3512 1758 * 5696 180
+ 0 * * * * * * 9860 0 0
+
+N 181 4011 * 3809 5316 4546 * * 5511 2757 * * 2260 5526 5335 4584 2525 2660 * * * 181
+ 0 * * * * * * 9387 0 0
+
+Y 182 2518 * * * 1236 4044 5279 3114 * * * * * * * 4983 4313 5114 * 3505 182
+ 0 * * * * * * 8703 0 0
+
+K 183 * * * 3739 * * * 3760 2875 4797 * * 4683 * 2583 2283 2103 4834 * * 183
+ 0 * * * * * * 8287 0 0
+
+T 184 * * * * * * * * * * * * * * * * 0 * * * 184
+ 0 * * 0 * * * 7166 0 0
+
+//
+�HHsearch 1.5
+NAME bc4ef49e84c894acd9a656db73d52eeb
+FAM
+FILE bc4ef49e84c894acd9a656db73d52eeb
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:58:09 2013
+LENG 108 match states, 108 columns in multiple alignment
+FILT 129 out of 629 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
+CCCCCCCC
+>ss_conf PSIPRED confidence values
+9788887652687755788886657789716424575332675563332455455888698989999999604555666786478999999999972202
+26886779
+>Consensus
+xxCxxxxxyRtxDGsCNNlxxpxxGxaxxxxxRllpxxYxDGixxprxxxxxxxxxgxxlPxpRxVSxxlxxxxxxxxxxxxxxtxxxxxwgQfixHDix
+xtxxxxxx
+>bc4ef49e84c894acd9a656db73d52eeb
+VTCPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLD
+FTPEPAAR
+>gi|241709425|ref|XP_002412033.1| peroxinectin, putative [Ixodes scapularis]gi|215505064|gb|EEC14558.1| peroxinectin, putative [Ixodes scapularis]
+-GCDFSYPFRYPDGSCNNQNHTDWGNAGSCMRKLLRPDYGDMVGEPR-----VASDGGPLPPPRVVSYTVHP--P-LEASSPKMTQLGVLFGQFITHDVS
+qiLRSGT---
+>gi|322798709|gb|EFZ20307.1| hypothetical protein SINV_07073 [Solenopsis invicta]
+-------------------------------------MSALGISRPRQSV-----GTHSLPAPSDIVSHVLQSSPKI-RSHEGLTSLSGVWSELVLQDIA
+ATVR----
+>gi|328875443|gb|EGG23807.1| peroxinectin [Dictyostelium fasciculatum]
+-PFTNgeSTEWRSYDGSNNNLINPNQGEIYEPFIRVA---------QQQFFNPDDYP-TLSIPLSREVSNIVCDQQ-SPVPSKELLSDMFNMWGQFLIHN
+MAHAL-----
+>gi|332028340|gb|EGI68387.1| Dual oxidase [Acromyrmex echinatior]
+------RPPARSIAPLCAIAWAFWAVLpvetDSRLIRKVPAAYSDGVYTMA---------GQDRPSPRKLSDLFMQGDD-GLPSVKNRTALFAFFGQLVT
+SEIIMA------
+>gi|313230135|emb|CBY07839.1| unnamed protein product [Oikopleura dioica]
+-KCD--PRLHTFDGTCNHPQN--KGSVLTPYIRWAPANYCNDRDTDRC-----SEHKRPLKNPRHISLF--GQRMNTMETNRFHTRFMIDWGQFLTHNIM
+QTPDL---
+>gi|195451388|ref|XP_002072896.1| GK13444 [Drosophila willistoni]gi|194168981|gb|EDW83882.1| GK13444 [Drosophila willistoni]
+-----------LKGQCENLLQsRRDG--HYAFRRLLDRHYKNGFHKMY--------DDDDLPGAWPISMALYEhvP-GSVppEDQNESPNLCLVQWAQFI
+EHDLSKPVSQS--
+>gi|296411466|ref|XP_002835452.1| hypothetical protein [Tuber melanosporum Mel28]gi|295629235|emb|CAZ79609.1| unnamed protein product [Tuber melanosporum]
+-----EFSYRQADGGYNNIMYPQLGRAGSAYARSVKPM---------------TKMPGAPPDAYTLFDRIFSRGpnDEHFREHDnNVSSMLFYTATIIIH
+DLFRT------
+>gi|302658402|ref|XP_003020905.1| hypothetical protein TRV_04981 [Trichophyton verrucosum HKI 0517]gi|291184775|gb|EFE40287.1| hypothetical protein TRV_04981 [Trichophyton verrucosum HKI 0517]
+-----------------------LGLLGRGMQRLFSQN------LY---------NRSTFQTRGFFlirswperdLNHTLAR-SLVCYSISLQSSFMIFL
+--IPSKDLFKT------
+>gi|30249221|ref|NP_841291.1| oxygenase [Nitrosomonas europaea ATCC 19718]gi|30180540|emb|CAD85149.1| putative oxygenase [Nitrosomonas europaea ATCC 19718]
+------IRFRTVTGICNDIYNPLMGSTHQIFARNVQfdTTFPDlGLDEMAR-NRHGDRLGLLKPDPQVISRKLFTRtqsqPDKcrnddElsgdlekfacd
+YKKAPALNVLAAFWIQFMTHDW---------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 * * * * * * * 2856 * * * * 1909 * 3568 * * 968 * * 1
+ 0 * * * * * * 3432 0 0
+
+T 2 6170 * 4539 3721 * 5747 5823 3741 3595 5199 * * 2762 4220 4293 2695 2478 4055 * * 2
+ 19 6225 * 1000 1000 * * 5623 1000 0
+
+C 3 * 104 * * 4969 * * * * * * * * 6187 * 5381 * * * * 3
+ 98 4363 5848 1066 936 * * 5670 1104 0
+
+P 4 4874 6190 1328 5317 5969 5148 5768 5271 6099 * * 3954 2161 4686 4680 * 4501 6008 * * 4
+ 448 5768 2009 1585 585 0 * 5668 1000 1000
+
+E 5 3063 * 3385 3116 3243 * 4277 * 5428 * * 3543 1843 5793 5395 3957 * 5786 * * 5
+ 351 2746 3905 1324 736 251 2645 5179 1370 1769
+
+Q 6 3469 * 4712 4847 6310 * 4099 4986 4619 6148 * 3143 2985 4978 3290 2786 3046 * * 4641 6
+ 15 6643 * 0 * 0 * 5922 1000 1278
+
+D 7 3234 * 4861 5749 4352 4403 5029 5485 5265 3218 6539 4074 6042 4018 5893 2420 3919 4977 5840 3441 7
+ 86 4298 7109 1101 905 * * 6589 1261 0
+
+K 8 * 6609 5654 3289 * 4286 5687 * 2012 6896 5543 5366 2945 4909 2473 4571 4278 4502 6180 * 8
+ 0 * * * * 0 * 6758 0 1000
+
+Y 9 4985 6577 * 6293 2830 * * 5211 * 5319 * 5736 5023 * 6661 6600 7119 4764 6175 678 9
+ 0 * * * * * * 6733 0 0
+
+R 10 5528 * * 6684 * * 5650 5895 * 6710 * * 4331 4577 286 * * * * 6577 10
+ 0 * * * * * * 6733 0 0
+
+T 11 5245 * 4614 5633 * 6684 6638 * 7062 5538 * 6345 5522 4253 3244 1789 1457 6661 * 6903 11
+ 10 * 7117 * * * * 6733 0 0
+
+I 12 3508 * * 5752 2878 * 4449 2617 * 2870 5093 * 3953 5919 * 4551 5396 4218 * 2462 12
+ 0 * * * * 0 * 6853 0 1000
+
+T 13 * * 570 6879 * 6784 * 6176 5743 5485 * 3848 5920 * 5523 3955 3612 * * * 13
+ 0 * * * * * * 6849 0 0
+
+G 14 4305 * * * * 159 * * 6681 * * * * * 5867 5220 * * * * 14
+ 0 * * * * * * 6849 0 0
+
+M 15 5012 * * 5215 5728 6709 5451 4768 4112 6302 5426 * 6176 5248 4356 1477 2726 4345 3827 4602 15
+ 0 * * * * * * 6849 0 0
+
+C 16 * 553 6083 * 4883 3560 * * * 6176 * 4897 * * 5720 5118 * * * 3478 16
+ 0 * * * * * * 6849 0 0
+
+N 17 6688 6176 * 4651 * * 5945 * * * * 204 * * * 5920 6327 6615 * 6242 17
+ 0 * * * * * * 6849 0 0
+
+N 18 5132 * 4568 6684 * 6589 3932 5819 * * * 378 * * 6489 4909 * * 6366 * 18
+ 27 6885 6589 1585 585 * * 6859 1028 0
+
+R 19 6644 * * 4628 5245 * 6842 3238 4675 1222 5343 * 3163 6952 4322 * 6004 2936 * * 19
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+
+R 20 3355 * 4339 3494 5503 4944 4976 5159 3123 4089 5896 4189 * 2814 3496 4638 5193 4025 7207 4718 20
+ 38 5273 * 1000 1000 * * 6859 1148 0
+
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+ 91 5006 5052 0 * * * 6859 1187 0
+
+P 22 4368 * 4742 5260 * 5860 5465 7135 5997 6277 * 6733 627 6517 5641 4163 5035 4704 * * 22
+ 12 6930 * 0 * * 0 6801 1000 1161
+
+T 23 5183 * 4063 3303 5448 5931 4824 7212 6700 2805 6084 3585 * 4903 3821 2553 2934 5967 6333 4464 23
+ 32 5493 * 1273 770 0 * 6801 1098 1161
+
+L 24 3969 6722 6624 4269 4350 * * 5267 6519 2892 3992 7327 * 4253 4853 4980 7259 5980 1267 5762 24
+ 14 * 6701 * * * * 6935 0 0
+
+G 25 4859 * 6014 * * 92 * * * * * * 6375 * * * * * * * 25
+ 32 * 5496 * * 0 * 6922 0 1016
+
+A 26 2128 6396 * 5345 * 6682 * 5036 3015 5913 4882 4347 * 4230 3641 1987 4624 5090 * 6007 26
+ 16 * 6542 * * * 0 6876 0 1104
+
+S 27 1205 * * * * * * 4861 5389 4571 * * 4011 5419 5092 2479 3913 3246 * * 27
+ 19 6235 * 2000 415 0 * 6856 1035 1187
+
+N 28 * * 3209 * 4568 1537 4471 6361 6463 3627 4295 2560 * 7164 6939 5167 6018 5870 * 4067 28
+ 37 * 5319 * * * * 6935 0 0
+
+R 29 4108 * 6714 3479 * * 5596 6266 * 5605 4001 5305 * 3516 3759 2373 1677 5899 * 5875 29
+ 29 6943 6416 0 * 0 * 6870 1000 1154
+
+A 30 2636 5950 5842 6081 4964 5933 5660 4687 7418 5696 * 5852 1380 3847 3012 5278 5276 6358 * * 30
+ 17 6380 * 0 * * 0 6927 1036 1075
+
+F 31 * * * 7115 1423 * 7018 6887 6393 2193 3224 7312 * 7455 * * * 6730 * 2031 31
+ 0 * * 1000 1000 0 * 6927 1075 1075
+
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+S 67 3702 * * 6374 4586 * * 4918 * 5945 4603 6308 * 5830 5670 587 4842 5503 * 7276 67
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+N 68 4084 * 3929 4578 7272 * * 5085 5770 3175 4900 1909 * 5920 3158 3809 3057 4851 * 6148 68
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+ 139 4578 4324 2544 271 1516 621 6886 1220 1880
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+P 103 2918 * * 6795 6639 3941 * * 5414 4602 5204 * 1226 5752 7141 4350 4477 2788 * * 103
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+A 107 1671 * * * * * * * * 3672 2214 * * * * 1351 * * * * 107
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+R 108 * * * * * * * 1093 2347 * 2746 * * * 2431 * * * * * 108
+ 0 * * 0 * * * 2897 0 0
+
+//
+�HHsearch 1.5
+NAME bdf48b24c3f0fdeaa0d9654593ea6f0d
+FAM
+FILE bdf48b24c3f0fdeaa0d9654593ea6f0d
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:06:10 2013
+LENG 164 match states, 164 columns in multiple alignment
+FILT 116 out of 1158 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEEEEEEEECCEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCEECCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
+EECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCCEEEEEEEEC
+>ss_conf PSIPRED confidence values
+9987899999999995552999997776937999999985137784136988899777926881763578888887546753255443104688749998
+2269998456699991687224898358999870799999998568889989455799981609
+>Consensus
+xxxxxvxxdixixxtxxGxixixLxxxxaPxxxxxFxxlxxxxxgxxYxgxxfxrvxxxxxiqxGxxxxxxxxxxxsxxxxxxxxexxxxxxxxxGxlsx
+xxxxxxxxxsxFfIxlxxxxxldxxxxvfGxVxxGxxvlxxIxxxxxxxgxPxxxixIxxcgxl
+>bdf48b24c3f0fdeaa0d9654593ea6f0d
+MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSM
+ANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL
+>gi|254584676|ref|XP_002497906.1| ZYRO0F16214p [Zygosaccharomyces rouxii]gi|238940799|emb|CAR28973.1| ZYRO0F16214p [Zygosaccharomyces rouxii]
+---------------TAGDIIVDLKYKQYEIESYNFLKLCKCN---FYQNQCFYNLHKDQSVQFGNPLLG-YEDRKELrlKNTSVEgiTsepvksrllka
+teSPDRSGKALKGSLGnvvvqKQESGQELIGSQVIISlAEhGLDATNA--IYFGDViQTSWSTLDKIERfAVDDTQRPIEDIRI------
+>gi|85374706|ref|YP_458768.1| peptidyl-prolyl cis-trans isomerase [Erythrobacter litoralis HTCC2594]gi|84787789|gb|ABC63971.1| peptidyl-prolyl cis-trans isomerase [Erythrobacter litoralis HTCC2594]
+-----LVMTLAPpdrgpgqaSaEGNTREVVIQLMPApFSQGWVSNIRTLAR--AGW-YDGISVNRVQDNYVVQWGDPnydnpeaegeakplpeglkvmge
+eeysangrilsqltvsnlvakerlePGADwIAPDVSEVGDEYSDLVGFQRgwpvasglsnnsaqtwpiHC-YGMVGVGRGySPDTGsGAELYTVIGHAPr
+HLDRNIALVGRIIAGMEHLSSLPRGKGALGfyaadeidkrTPIVSIRVAS----
+>gi|328865705|gb|EGG14091.1| phosphoglycerate/bisphosphoglycerate mutase [Dictyostelium fasciculatum]
+--------------TSKGGIIVELYRDKARLSCERFTNQI--EVGR-YQDTIIHRIVKNLFIQCGRYSINSSSLDNSLMNNNDSSsnsnnddsitsftst
+stttsiydnnnnnnntqptslnssstilnqlyvdssdddeleqeqqqddivyisdnkesnltnskkesssskqqelldkdqfkrlikenNDNGLSFNERG
+LVAMGSYN------QIIFTLDACGALNRKYPIIGRVHpSTMQMLCILESTPTnESNCPIDPIFLTN----
+>gi|156839035|ref|XP_001643213.1| hypothetical protein Kpol_457p6 [Vanderwaltozyma polyspora DSM 70294]gi|156113813|gb|EDO15355.1| hypothetical protein Kpol_457p6 [Vanderwaltozyma polyspora DSM 70294]
+--------------TSKGNLNVELWAKECPIASKLFIETC--LSKF-WVGSSLGEFgedGSKLYIDFDGDTKF---------KDSIAMEsNSRLLFNREG
+LLGW-----DIDAGLWFVTTSEKC-DGKRKILIGKIV-------------------------------
+>gi|309366416|emb|CAR98339.1| hypothetical protein CBG_27914 [Caenorhabditis briggsae AF16]
+----RIIFDVVSGNLMMGRIIIMLSN-FEPELRKHFYKMADGNRtNRSFSGTIFHRKTNKFIEGGVLTSSNDTSTVESLYTTKPVNNPKFYSKY--VMIA
+NRNIHDDYRGTRFLITTSPLLHCDQDHIPLGTIVCGREIFDQIAELPcDQDGKFLSTLSI------
+>gi|321456758|gb|EFX67858.1| hypothetical protein DAPPUDRAFT_330682 [Daphnia pulex]
+----KCYFRMNINGVMSERIIVQLEKAKAPIMCAKFIEMCTKKDG--YKGSKIYKTIKGesVFCSSGWFHTYDLDQRCDVFTADKSDVAEQRGSM-RFQI
+KKSENGIAQVSTEFNVILANRPRHHRSTSVFAQIIEGLTVFDQISGMDMKQNR----VIFAECGV-
+>gi|159482122|ref|XP_001699122.1| hypothetical protein CHLREDRAFT_193502 [Chlamydomonas reinhardtii]gi|158273185|gb|EDO98977.1| predicted protein [Chlamydomonas reinhardtii]
+---------------EMGDVVVKLLPDLAPASVRELRRMAALLAleGTGCDGCKLYRSEVNFLVQGVIRHPGAYVATPRRPNPP------QKKMMERGLA
+CWAGGM---GGPDWFVNLIDQSGFGDDHLCWGKI-DDMSLLDAIVKLPTK----------------
+>gi|308813275|ref|XP_003083944.1| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (ISS) [Ostreococcus tauri]gi|116055826|emb|CAL57911.1| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (ISS) [Ostreococcus tauri]
+--------------LNEATLEITVDGYNAPLTAGNFVDNVR--RGV-YRNAPMRRSET--AILGGASN--pDAPSVPleikasdafdPSYRFPLDvqnGE
+aIPSIPLSINGSVAMARS-sdGQSDKDQFFVYLFDkrsaglggLSFEEGEFSVFGYVTKGEEYLGSI----------------------
+>gi|342181197|emb|CCC90675.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
+-PRPIVTAAVLIE-TSVGTFVVDLYGADCPAATGELVNLCRCK---YFNGCIATEVIPDSvlifshpveALQQQTFASLLDMgGMRHLPLRDGTLdatst
+rqavyaewkrmrrhvarpqdgakgavgaenvefvirpplEAPGTIRY-SGLLLLevpqvesgATTVCHPLKMRLLITLSNrhLDYLEGQFIVVGEVREGC
+DVVEKMRAAPhrrltTSSGittRPSRLVRIKHTTVL
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 2120 0 0
+
+V 2 * * * * * 3092 * 2696 3075 * * * 2380 * * 2833 * 1851 * * 2
+ 0 * * * * * * 3322 0 0
+
+N 3 * * * * 4693 * * * 3754 * * 1296 * * 2222 3264 3027 * * 4681 3
+ 178 3106 * 0 * * * 5803 1348 0
+
+P 4 4773 * 4927 * * * 4567 * 3350 4945 * * 1126 3175 3345 3464 * * * * 4
+ 0 * * * * * * 6353 0 0
+
+T 5 * 5133 * 5349 * * 4364 2892 2714 4185 5131 5315 * 5118 2348 5366 4021 3792 * 3065 5
+ 0 * * * * * * 6936 0 0
+
+V 6 3223 3777 * * 5146 * * 2633 * 4194 * * 5586 * * * 5243 1194 * 3448 6
+ 0 * * * * * * 7153 0 0
+
+F 7 * * * 5556 1798 * * 5268 * 5458 * 5664 * * 5367 3889 4158 4026 * 1274 7
+ 0 * * * * * * 7160 0 0
+
+F 8 5099 * * * 1689 * * 3697 * 1712 2458 * 5081 5480 * * 5482 5508 * * 8
+ 0 * * * * * * 7196 0 0
+
+D 9 5099 * 869 3657 5236 * 4326 * 5544 * * * 5590 4814 5001 * 3398 3974 * * 9
+ 67 * 4468 * * * * 7196 0 0
+
+I 10 * 5549 * * 3596 * * 1256 5667 3198 4195 * 5639 * * * * 1869 * * 10
+ 66 5328 5654 0 * * 0 7353 1045 1116
+
+A 11 1914 * * 2583 * 3666 * 5548 3423 5228 * 5110 * 5173 * 3187 3774 3211 * * 11
+ 0 * * * * * 0 7335 0 1235
+
+V 12 * * * 5013 5430 * * 1516 4498 4305 5839 * 5285 * 4750 3635 4556 1746 * * 12
+ 75 4312 * 2336 318 * 0 7432 1179 1235
+
+D 13 4452 * 2534 2807 4650 3204 * 4913 5967 3478 * 2455 5771 * 5553 4141 5795 4818 * 5690 13
+ 195 3274 5427 563 1630 * 0 7463 1557 1235
+
+G 14 6167 * 3476 2795 * 2003 5272 * 4895 5323 * 2951 6295 5882 3391 4269 3564 5185 * * 14
+ 40 5182 * 949 1053 371 2141 7624 1116 1410
+
+E 15 4594 6352 6466 4103 * 4310 * 4856 3712 4877 * 4832 * 4424 4234 5227 1087 4348 * * 15
+ 36 5326 * 1958 429 0 * 8021 1158 1004
+
+P 16 5204 * 4277 4155 4640 5684 * 5595 5108 4670 5313 2799 3143 5084 5863 2313 2727 5793 * 5826 16
+ 0 * * * * * * 8346 0 0
+
+L 17 3207 6810 6675 4094 4793 5484 5956 3696 2788 2401 4556 * 6696 4649 5745 4732 5540 3280 * 4160 17
+ 0 * * * * * * 8361 0 0
+
+G 18 5777 * * 5739 * 160 6375 * 6709 * * * * 5929 5594 * * 6710 * * 18
+ 26 6386 7464 0 * * * 8318 1042 0
+
+R 19 6333 6471 2410 4362 6774 6601 * 7151 4215 5295 * 3925 4601 6119 1822 3842 3269 4159 * * 19
+ 0 * * * * 0 * 8333 0 1000
+
+V 20 * * * * 2743 * * 1424 * 2310 3950 * * * * * * 2241 * * 20
+ 0 * * * * * * 8337 0 0
+
+S 21 6749 * 4304 3907 * 5250 * 2866 4201 4061 * 4601 6588 5016 4647 3920 3055 1887 * 5913 21
+ 0 * * * * * * 8337 0 0
+
+F 22 4032 7079 * * 3060 * * 1071 * 3498 5075 * * * * * * 2203 * * 22
+ 0 * * * * * * 8337 0 0
+
+E 23 6690 * 2868 1587 * 3312 6352 4247 5002 5272 5732 * * 2855 4520 6860 4797 4251 * * 23
+ 16 * 6464 * * * * 8337 0 0
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+K 155 4551 6280 2073 4134 * * 4581 * 3812 4312 * 4981 2841 5653 3725 3670 3037 5684 * * 155
+ 0 * * * * 0 * 7826 0 1058
+
+I 156 5997 5094 * * 6145 * * 1383 * 3633 * 5697 * 5809 * 6233 4450 1492 * 5319 156
+ 0 * * * * * * 7884 0 0
+
+T 157 5796 * * 5003 5916 6241 * 2530 3175 4337 6117 5964 5891 5196 2439 4922 2965 3406 * 3769 157
+ 0 * * * * * * 7876 0 0
+
+I 158 * * * * 5569 * * 366 * 5053 * * * * * * * 2534 * * 158
+ 0 * * * * * * 7880 0 0
+
+A 159 4066 * 5887 3663 5758 4147 5518 3677 4046 3780 5805 6143 * 4374 4447 3237 2390 3743 5645 5749 159
+ 0 * * * * * * 7599 0 0
+
+D 160 5470 * 2596 4217 * 3409 3156 * 3069 * * 2843 * 5781 3960 2694 4846 5533 * * 160
+ 0 * * * * * * 7489 0 0
+
+C 161 4384 741 * 4898 * 5422 * * * 5310 * * * * * 3571 4254 2887 * * 161
+ 0 * * 0 * * * 7054 1000 0
+
+G 162 * * 4718 4728 * 331 * * * * * 4212 * * * 5046 4464 * * * 162
+ 0 * * * * * * 6641 0 0
+
+Q 163 3829 * * 2200 * * 4626 2808 * 2622 * * * 3957 * 4526 * 1952 * * 163
+ 0 * * * * * * 6361 0 0
+
+L 164 * * * * 4551 * * 3262 * 670 4323 * * * * * * 2953 * 4462 164
+ 0 * * 0 * * * 5796 0 0
+
+//
+�HHsearch 1.5
+NAME be74be0e66ca7b4603630a5a17fef2a4
+FAM
+FILE be74be0e66ca7b4603630a5a17fef2a4
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:00:02 2013
+LENG 61 match states, 61 columns in multiple alignment
+FILT 101 out of 263 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEECCCCCCCCCCEECCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC
+>ss_conf PSIPRED confidence values
+9746388878980249778317889986689888846467989889868997498676788
+>Consensus
+xxCxxxxxxxxxxxxtCgxxxCykxxxxxxxgxxixrGCtCPxxxxxxxvxCCxTxDxCNx
+>be74be0e66ca7b4603630a5a17fef2a4
+TMCYSHTTTSRAILTNCGENSCYRKSRRHPPKMVLGRGCGCPPGDDNLEVKCCTSPDKCNY
+>gi|82134454|sp|Q8JFX7.1|NX14_BUNMU RecName: Full=Muscarinic toxin BM14; Flags: Precursorgi|21388237|emb|CAD18848.1| muscarinic toxin-like protein [Bungarus multicinctus]
+-MCNMCVRPYPFMSSCCpeGQDRCYKSYWVNENGKQKkyhgkypvilERGCvtACTGPGSGSiynLYTCCPT-NRCGS
+>gi|162145668|gb|ABX82866.1| three finger toxin V [Walterinnesia aegyptia]
+-TCLICPKKYCNQVHTCrnGENLCIKTFYEGNlLGKQFKRGCaaTCPEARPREIVECCSR-DKCNH
+>gi|25452897|sp|P79688.1|CXH_BUNMU RecName: Full=Cardiotoxin homolog TA-ctx-like; Flags: Precursorgi|1813889|emb|CAA71820.1| cardiotoxin-like protein [Bungarus multicinctus]
+-TCFNDDLTNPKTTELCrhSVYFCFKNSRIAGGVERMQRGCslTCPDIKYnGKYIYCCTR-DNCNA
+>gi|331691435|gb|AED89560.1| putative three finger toxin precursor [Micrurus altirostris]
+-IC---DDSNIPSERTpkrCqgGYNICYKINFPTPgYELLQIKGCaaRCPTNPRFPKAECCAT-DNCI-
+>gi|82199672|sp|Q69CJ8.1|TXW1H_OPHHA RecName: Full=Weak toxin DE-1 homolog 1; Short=WTX DE-1 homolog 1; Flags: Precursorgi|38049479|gb|AAR10442.1| weak toxin DE-1-like protein [Ophiophagus hannah]
+-ICLKQEPFQPETTTTCpeGEDACYNLFWSDHSEIKIEMGCGCPKTEPYTNLYCCKI-DSCNK
+>gi|156485220|gb|ABU68471.1| 3FTx-Tel1 [Telescopus dhara]
+-KCHSCTGRLCITFQNCpdA-QACSQMWKdSDMLKLNVVKGCatNCTLPGPGQQILYCTK-DYCN-
+>gi|166215732|sp|A7X3S2.1|NXAC3_TRIBI RecName: Full=Toxin 3FTx-Tri3; Flags: Precursorgi|156485234|gb|ABU68478.1| 3FTx-Tri3 [Trimorphodon biscutatus]
+--------PPFPLGLYTvsHVKSCGGHLSSIGQCgeDWVVKGCakTCPTAGPGERVKCCYS-PRCNK
+>gi|41017457|sp|P60236.1|NXM14_DENAN RecName: Full=Muscarinic m1-toxin4
+-TCVKSNSIWFITSENCpaGQNLCFKRWQyISPRMYDF--------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+T 1 * * * * * * * * * * * * * * * * 0 * * * 1
+ 0 * * * * * * 1000 0 0
+
+M 2 * * 5626 5011 6174 * * 1804 2362 5380 4345 4912 * 5606 6954 6116 1876 4961 * * 2
+ 0 * * * * * * 5724 0 0
+
+C 3 * 31 * * * * * * * * * 5563 * * * * * * * * 3
+ 446 2166 4546 539 1682 * * 5721 2196 0
+
+Y 4 * 5952 5409 * 3158 * 2977 * 4392 2878 5101 4632 * * 4401 5664 * 4121 * 1541 4
+ 0 * * * * * 0 5379 0 1990
+
+S 5 * * * 5892 * * * 4756 2767 5132 5372 2104 * 3982 * 2298 2310 5449 * 5450 5
+ 0 * * * * 3730 113 5379 0 1990
+
+H 6 6516 1799 3511 6461 5956 4604 2810 * 5204 4468 * * * 3400 4783 4264 3427 5731 5414 6378 6
+ 34 * 5414 * * 3384 145 5394 0 1915
+
+T 7 * * 2896 3927 6222 6329 4863 5962 3364 5689 4805 4483 2617 4355 4188 4756 3062 5398 * 3654 7
+ 145 * 3385 * * * 0 5413 0 1949
+
+T 8 5234 * 4749 4439 4957 2607 * * 5827 3884 6057 5640 5007 * 5269 1802 2638 6444 * 4120 8
+ 252 4996 2956 0 * 711 1361 5390 1077 2347
+
+T 9 5023 6013 6381 5532 6362 6672 6218 3552 4782 3211 5190 3735 3241 5438 5266 3308 2654 3890 6311 4109 9
+ 243 2789 6590 1503 628 3289 156 5762 1680 1987
+
+S 10 * * 4293 5836 3557 4626 * 5078 4700 3014 7131 3424 4734 3426 3753 3823 3388 3935 6088 3994 10
+ 0 * * * * 979 1021 5835 0 1976
+
+R 11 4869 2008 4268 * 4229 4032 * 5114 * 6569 5809 5346 1819 * 3599 4081 6160 6470 6657 6835 11
+ 18 * 6372 * * 641 1479 5852 0 1464
+
+A 12 4247 * 4455 3447 3120 4850 5540 3859 3246 4188 5848 4444 3034 5107 4226 4275 6524 3856 * 6597 12
+ 22 6049 * 2314 324 1022 979 5826 1078 1202
+
+I 13 5209 * 4848 5021 5635 4274 5673 3369 3271 4393 5626 4491 * 4678 5293 3755 1554 6102 * 6707 13
+ 19 * 6237 * * * 0 5852 0 1072
+
+L 14 6551 * 6585 4768 3844 5089 5326 5234 5853 3496 * * 3717 * * 2129 1747 4844 6403 4776 14
+ 0 * * * * * 0 5837 0 1156
+
+T 15 6050 * 5878 1682 6408 7109 5144 5742 2541 5554 6329 6585 * 3318 4484 5608 3310 3389 6320 * 15
+ 51 * 4850 * * 1374 703 5837 0 1156
+
+N 16 6481 5172 5204 5665 4998 * 7100 4907 4994 4441 6423 3507 4984 5083 4395 4907 1135 4432 * 5528 16
+ 42 5114 * 1109 899 711 1362 5806 1106 1282
+
+C 17 * 67 * * * * * * * * * * * * * * 5556 5356 * * 17
+ 4343 73 * 928 1075 0 * 5852 5401 1072
+
+G 18 3930 * 4492 3890 * 699 4868 * 6692 * * 5488 * 5477 * 3745 * 6503 5504 6605 18
+ 64 * 4532 * * 0 * 5872 0 1189
+
+E 19 * * 6748 1713 6471 5333 5034 6548 3596 5434 4694 5717 * 1789 4494 5190 6703 4455 * 5127 19
+ 17 * 6407 * * 0 * 5794 0 1199
+
+N 20 * * 2676 4570 6816 5678 * 5481 2896 * * 1670 6875 5103 4377 4614 2902 * * 4588 20
+ 38 * 5253 * * 0 * 5873 0 1008
+
+S 21 4238 * * * 3833 * 6869 2381 4739 2080 5325 5988 * 5539 5655 3522 2739 3826 * 6257 21
+ 0 * * * * 0 * 5830 0 1113
+
+C 22 5409 34 * * * * * * * * * * * * * * * * * * 22
+ 0 * * * * * * 5886 0 0
+
+Y 23 6674 6756 * 4976 1976 5581 * 6450 * 5658 * * * 6696 * 5110 * 5134 * 796 23
+ 0 * * * * * * 5886 0 0
+
+R 24 6562 5658 * 4282 * 5581 * 3978 1050 5481 5572 5044 * 3953 4316 5882 2923 6203 * * 24
+ 40 7403 5544 0 * * * 5886 1000 0
+
+K 25 * * * 3607 6356 * 5531 5954 2043 3655 3182 3828 5650 5489 3046 4761 4161 4727 6738 4009 25
+ 15 * 6603 * * 1903 449 5879 0 1086
+
+S 26 3574 * 6794 * 3524 * * 4295 4244 4986 7240 5955 6619 * 4949 2565 2436 5017 2926 3275 26
+ 199 5449 3238 2032 405 530 1702 5887 1143 1107
+
+R 27 * 7043 * 5523 3692 * 4800 3629 4440 4716 5536 4965 6737 5004 4357 4623 5457 3462 1384 6344 27
+ 249 2771 6390 1402 686 2959 199 5722 1779 1633
+
+R 28 4953 3682 5785 5393 * 4598 6639 3890 4315 5907 5370 5977 3212 6612 2651 3232 3031 3933 6156 4773 28
+ 0 * * * * 650 1462 5722 0 1606
+
+H 29 3536 * 2823 3452 5805 3736 4772 4678 4340 6716 6648 3387 3913 5509 5181 4428 2956 4406 * 6707 29
+ 86 4465 6282 1786 494 2110 380 5822 1221 1185
+
+P 30 3606 * 4756 5283 3816 2696 3368 3972 4356 3623 4895 6368 3990 5857 4718 3696 4048 5673 * 5783 30
+ 585 2724 2456 187 3043 225 2793 5835 1833 1208
+
+P 31 * * 5519 * 4831 3426 5455 6404 4065 4150 6082 3372 3748 4801 1505 3685 5110 * * 5740 31
+ 22 * 6075 0 * 3738 112 5621 1000 2100
+
+K 32 6317 5295 5900 3777 5087 856 6504 * 3796 4881 6158 * * 6323 5202 4692 6541 4298 * 5680 32
+ 202 3099 6137 1777 498 185 3054 5790 2321 2081
+
+M 33 6859 * 4493 4012 4395 5601 * 4088 2996 3460 3815 5787 4232 6654 3608 6028 2859 4099 6045 3629 33
+ 72 4361 * 1940 435 1634 561 5863 1308 1166
+
+V 34 * * 4102 4535 6026 6578 * 3023 3307 4508 * 4838 5533 4172 1772 * 5940 3427 3774 5835 34
+ 0 * * * * 1921 442 5843 0 1205
+
+L 35 4874 * * * 3816 * 5451 1457 5636 3711 6558 * 5689 5726 * 5092 3984 2224 6587 4465 35
+ 73 4660 6700 2473 287 808 1221 5835 1174 1134
+
+G 36 4568 * 4310 1741 6835 4931 6408 3997 3561 4106 5124 7403 * 6558 3976 3866 4165 3102 * * 36
+ 15 6590 * 1000 1000 1323 736 5853 1000 1078
+
+R 37 * * * * 6766 6539 * * 2627 3858 4290 * * 4734 700 * * * 5167 5868 37
+ 7 * 7627 * * * 0 5874 0 1021
+
+G 38 5777 * * 6575 * 168 6071 * * * * * * 5869 5235 * 6487 * * 6464 38
+ 0 * * * * 557 1642 5868 0 1062
+
+C 39 * 0 * * * * * * * * * * * * * * * * * * 39
+ 1988 419 * 1000 1000 0 * 5883 4683 1000
+
+G 40 3319 * * 5872 * 2469 * 5093 5136 * 6505 4151 * * 5118 2781 1377 5806 * * 40
+ 112 3745 * 1000 1000 * * 5885 1386 0
+
+C 41 * 0 * * * * * * * * * * * * * * * * * * 41
+ 0 * * * * * 0 5857 0 1085
+
+P 42 5033 * * * 6195 6767 4935 5833 * 5856 * * 350 * * 5746 3891 * * 6844 42
+ 0 * * * * 0 * 5863 0 1085
+
+P 43 * * 5022 3152 * 4670 * 3834 2106 4361 * 5040 3660 4602 4648 3851 2430 6356 6816 * 43
+ 11 7096 * 0 * * * 5885 1000 0
+
+G 44 2576 * * 5196 5394 2843 * 6585 5030 5294 5409 4911 2381 4874 4693 3953 4296 2950 * 6814 44
+ 50 * 4874 * * * * 5889 0 0
+
+D 45 3871 * 4788 3085 * 3183 * 5162 2032 5719 5157 4392 4522 4620 3876 3490 5246 5530 6506 * 45
+ 151 * 3330 * * * 0 5844 0 1169
+
+D 46 4479 * 4849 4540 * 4755 6739 4567 4612 4823 * 4710 1492 6116 3493 3591 5406 4639 5692 4328 46
+ 333 2637 4470 426 1967 * 0 5620 1773 1763
+
+N 47 * * 3895 5482 4812 1246 4933 * 5373 4002 5919 3373 4980 * 3322 * 6047 6040 * 4088 47
+ 12 6908 * 0 * 2151 368 5600 1000 1988
+
+L 48 * * 3882 1851 7036 6527 * 3344 3254 3587 6892 6066 4608 5181 4948 5489 5800 2889 6715 4612 48
+ 165 3891 4609 815 1212 108 3791 5620 1302 1763
+
+E 49 * 6539 4721 3551 5502 5675 6214 4004 2839 5538 6660 3912 * 3827 3957 3768 3518 4765 * 2485 49
+ 10 * 7231 * * * 0 5819 0 1213
+
+V 50 5836 * 5751 * 6718 * 6590 1871 * 3568 5317 6024 6143 * 5644 6014 5258 1271 * 4163 50
+ 14 * 6706 * * 1635 560 5816 0 1253
+
+K 51 5631 6772 6777 3307 4992 * 4389 5157 2322 3442 5584 3688 * 4945 5381 6915 3116 3380 * 3526 51
+ 8 7563 * 0 * 0 * 5821 1000 1207
+
+C 52 * 90 * * * * * * * * * * * * * * * * * 4045 52
+ 0 * * * * * * 5889 0 0
+
+C 53 * 35 * * * * * * * * * * * * 5365 * * * * * 53
+ 0 * * * * * * 5889 0 0
+
+T 54 3330 * 6017 5053 5779 6000 * * 3185 6639 5867 4376 5610 5443 4687 1834 2170 6564 * 4628 54
+ 0 * * * * * * 5889 0 0
+
+S 55 * * * 5870 * 5158 * 4978 3921 * * * * * 3352 3094 681 * * 5779 55
+ 5268 * 38 * * * * 5889 0 0
+
+P 56 * * * * * * * * * * * * 0 * * * * * * * 56
+ 0 * * * * 0 * 1000 0 5433
+
+D 57 * * 268 6633 * 6355 * * * * * 4052 4312 5776 * 5779 * * * * 57
+ 0 * * * * * * 5889 0 0
+
+K 58 6488 * 4922 4419 6070 5777 * * 1608 3545 6655 1996 * * 2753 5753 6576 * * 5360 58
+ 7 * 7626 * * * * 5895 0 0
+
+C 59 * 36 * * * * * * * * * * * * 5352 * * * * * 59
+ 0 * * 0 * 0 * 5892 1000 1000
+
+N 60 * * 6532 * * 4663 * 5116 * * * 139 * * * * 6278 * * * 60
+ 13 6754 * 0 * * * 5895 1000 0
+
+Y 61 3867 * 4891 5795 * 4907 3907 4140 1978 3486 5039 3248 * 5336 4015 3644 * 6187 * 3966 61
+ 0 * * 0 * * * 5443 0 0
+
+//
+�HHsearch 1.5
+NAME c12ad1255bc3ed843ae21de938ab5f62
+FAM
+FILE c12ad1255bc3ed843ae21de938ab5f62
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:17:02 2013
+LENG 157 match states, 157 columns in multiple alignment
+FILT 206 out of 1461 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 11.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEEEECCCCCCEEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHC
+CCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCCEEEECCCCCCCCEEEEEEEC
+>ss_conf PSIPRED confidence values
+9199999999999999999975266108999999986178965999999998999999996158997799999999788857979999999999999987
+998999998369989999999879999742234444304410136998589999969
+>Consensus
+xixirxxxxxdxxxixxlxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxvGxxxxxxxxxxxxxxxixxxxvxxxxrxxGigxxllxxxxxxxxxx
+xxxxxxxxxxxxnxxxxxxyxxxGfxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxl
+>c12ad1255bc3ed843ae21de938ab5f62
+HMDIRTITSSDYEMVTSVLNEWWGGRQLKEKLPRLFFEHFQDTSFITSEHNSMTGFLIGFQSQSDPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQR
+GCTRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVNGISVFANYDGPGQDRVLFVKNI
+>gi|288940219|ref|YP_003442459.1| acetyltransferase [Allochromatium vinosum DSM 180]gi|288895591|gb|ADC61427.1| acetyltransferase [Allochromatium vinosum DSM 180]
+-IQLKIAGSSEIDEVLKLHYRYQIDSIAKEDKSDGFVTTsftkdqmvdliNk-ENGLFIAK-kgGAVVAYVMAASWEFwsawpmfafminelpnleyKGQ
+MLSVENsyqygpICIDKSVRGTGVLEAIFEFAKNKMSER-YPILVTFVNKANERSYQAHKRKlGLDVIH-------------QFEfNSNSYYEMACK-
+>gi|256825653|ref|YP_003149613.1| acetyltransferase (GNAT) family protein [Kytococcus sedentarius DSM 20547]gi|256689046|gb|ACV06848.1| acetyltransferase (GNAT) family protein [Kytococcus sedentarius DSM 20547]
+-WHLRKPVaae---TPAMTRLLAAHQervlgkasaAWADVDDRVLGR--gAEFRFHRIAQDAdgq---ARGWVNVNDRAVHR----vmidvyldpal---
+--Vagevd-----gadAAAVWDALFAWGRAAAIRMAWRRgvsetvLDSSPYEADEFTRERLAAAGFHKE-----------------------------
+>gi|328866934|gb|EGG15317.1| hypothetical protein DFA_10151 [Dictyostelium fasciculatum]
+-LLLEPFtfdatkalnqeEDEEWETIEELAGDakvamttqFIPHPyPTGASKSWIASqqkawSTGTDMTLAIKLIeqgptkSKIIGVISiMSDIY--NGT
+NILKlGYWIGSPYWNNGYATEASLVIVDFVFNTlNISCLWASCMSHNIGSERVFQKIGMKYQY---------SQPLVIRgQPIDCKFYNITK
+>gi|324502796|gb|ADY41227.1| Protein NCOAT [Ascaris suum]
+---mkcaiplslncytI-----------------rpykdedekelrtfydasedr-f---avegsilndtkeERFFDRTIGPFVSLss-PRTAFVAVDNi
+gttskr--IAA--ivSAAlnaksfaekfrrqyipkvrskyamyaeiekeqgisgedverlWQCQREE--isdweppNLSDyfydqfpsqvdIRYRSVTQD
+AVAVRRLIYVTAVALSFNGSNG----ffvvLQSSETEKIDF-------------------------------------ycklglvtlkevglpeeillmg
+hsL
+>gi|284030371|ref|YP_003380302.1| GCN5-related N-acetyltransferase [Kribbella flavida DSM 17836]gi|283809664|gb|ADB31503.1| GCN5-related N-acetyltransferase [Kribbella flavida DSM 17836]
+TASINDAPKDDLD----IEDDEFTPERLRAYEHAQLMHDRSLYRVIARHrgTGELAGHSTITVERERPHIGEQADTAVSRNHRGHRLGALVKTGMLLWMR
+EAepALSQLDTWNAESNDHMIGINEQLGYRVVA---------RAMAY--------------
+>gi|333030862|ref|ZP_08458923.1| hypothetical protein Bcop_1750 [Bacteroides coprosuis DSM 18011]gi|332741459|gb|EGJ71941.1| hypothetical protein Bcop_1750 [Bacteroides coprosuis DSM 18011]
+--------------------------------------------FELKINDTTAIVEYILTP---QGVVFMTHTEIPNSLESDEVIPVLMEESLQEIKRK
+EHVVFPMC-------------------------------------------------
+>gi|221114075|ref|XP_002160156.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
+-VQTAIATLNDVDDILECINDAFMEyaffkkpeyhQKFTRENVTSMLLQKDSVFILAYNneicehfKNKVVGTIFLHWitttetyvlendsIAKVTLIGK
+FSSLSVPPKYANQGFGKALVSSAEKYLCQEVFNTIQhttlsasdsnkkkqfgvlmeLKAINFRKDLLSWYEKQGYQFISEIRQLDAAFTRRLLEDKDVYF
+ILMRKIL
+>gi|163849368|ref|YP_001637412.1| hypothetical protein Caur_3846 [Chloroflexus aurantiacus J-10-fl]gi|222527365|ref|YP_002571836.1| hypothetical protein Chy400_4155 [Chloroflexus sp. Y-400-fl]gi|163670657|gb|ABY37023.1| hypothetical protein Caur_3846 [Chloroflexus aurantiacus J-10-fl]gi|222451244|gb|ACM55510.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
+--AAQRLSADMRADLAALhSAtagwQSWHPDG--------------GPAFGVVAtTGQLQAIAA--TCFATRDVIEIGWAMQPAAVPA---LQGCIGALT
+QLCFGL-ASRVYLFVEAGDDEIVTGCRHLGF--------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+H 1 * * 2798 4450 * * 2841 * 2393 * 4264 1589 3380 * * * * * * * 1
+ 0 * * * * * * 7761 0 0
+
+M 2 6263 6752 * * 3173 * 6854 2029 * 2095 2429 * 6164 * * * 6220 3110 6918 4573 2
+ 10 7113 * 2825 219 * * 11503 1103 0
+
+D 3 4646 * 4141 3132 7473 7426 4815 3168 3105 4678 5179 4465 7331 3937 3735 4415 2792 4587 7283 5878 3
+ 41 5166 * 1197 827 * * 11632 1693 0
+
+I 4 6542 6408 * 7444 3538 * * 1596 5658 1989 5378 * 7550 * * 7210 5484 2623 7369 4153 4
+ 0 * * * * * * 11669 0 0
+
+R 5 4316 6512 5616 4235 * 7324 5205 4676 2966 5145 7506 6276 * 4768 1209 4710 4807 4017 * 6242 5
+ 15 7793 7467 0 * * * 11715 1000 0
+
+T 6 4807 7514 4624 3776 5533 7717 6608 4584 3416 3638 7491 4475 2037 4115 3809 4434 4251 4637 7646 5284 6
+ 26 6298 7617 535 1690 * 0 11695 1151 1025
+
+I 7 2045 5525 7699 5991 3368 6200 7069 2844 * 2216 4783 * 4587 7579 * 6436 6482 3583 5958 4735 7
+ 39 5219 * 451 1896 935 1068 11709 1513 1197
+
+T 8 4688 7212 3896 3010 7594 5027 6773 7493 3766 4481 * 4009 5468 3894 4169 2993 2260 4256 * * 8
+ 17 6453 * 1051 951 * 0 11718 1171 1025
+
+S 9 3466 * 3715 2654 * 6753 5167 4148 3477 3801 * 4274 2995 5123 4541 4329 4792 3889 * 5857 9
+ 61 4785 7585 1862 464 1025 975 11700 1709 1188
+
+S 10 3413 7566 2888 2538 * 5070 6033 5881 3746 5658 6507 3772 5663 3769 4632 3182 3578 6792 5914 * 10
+ 29 5653 * 0 * 1166 851 11700 1349 1161
+
+D 11 5703 * 928 2854 6103 5684 4235 * 7774 5481 * 5237 7558 4090 5493 6318 5529 6582 6373 4901 11
+ 21 6818 7400 1000 1000 0 * 11742 1120 1030
+
+Y 12 2834 5298 6127 4505 3323 6302 6756 3381 4527 2379 5884 7598 6563 7456 4624 5099 6494 3254 4907 3940 12
+ 20 6160 * 2141 371 0 * 11747 1256 1022
+
+E 13 3322 * 2766 2892 5956 4617 6566 6447 3661 4151 6884 5451 2783 3733 4521 4174 5505 5273 * 7493 13
+ 9 * 7278 * * * * 11758 0 0
+
+M 14 2887 7649 3180 2877 5791 4831 6456 4722 4167 3902 5629 5781 5329 3300 3982 3755 5025 4783 6714 6699 14
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+I 157 * 5984 * * 5012 4690 * 2564 5884 761 5831 5947 5875 * * * 5890 4299 * 5656 157
+ 0 * * 0 * * * 9753 0 0
+
+//
+�HHsearch 1.5
+NAME c2c32c13af9575e387657a5ea9736806
+FAM
+FILE c2c32c13af9575e387657a5ea9736806
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:19:22 2013
+LENG 135 match states, 135 columns in multiple alignment
+FILT 130 out of 509 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEE
+EEEECCHHHHHHHCCCEECCCCHHHHHHHHHCCCC
+>ss_conf PSIPRED confidence values
+9865557565798999855564457678888898878856588652157788774476654567458999999999873021142999999986355678
+62347648888751820146320999998647689
+>Consensus
+aRtkxtaxkxxxxkaprkxxxxkxxxxxxxxxxxxxkxxrxrpgtxalrEIrxyQkstxlLIxKlpFxrLVrEIxxxxxxxxrxqxxAlxaLQeAaExxL
+vxlfexaxxxaxHakRvTlxxkDxxlxxxirxxxx
+>c2c32c13af9575e387657a5ea9736806
+ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
+VALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
+>gi|290998115|ref|XP_002681626.1| histone H3 [Naegleria gruberi]gi|284095251|gb|EFC48882.1| histone H3 [Naegleria gruberi]
+--------------------------------------EKRKRKQRWLQEIRKYQKSTRNLIPRASLIRLIKQVTAELSEKIpyirqlagegaiRWRKDA
+LAALHSAAEDFLHEFLTLSNYATLHAKRVTLMGRDLKLVQNINREH-
+>gi|309354883|emb|CAP39585.2| hypothetical protein CBG_23442 [Caenorhabditis briggsae AF16]
+ARTKQTARKSTGGKAQESSWPPRLPANRP------QLPEESRSHIVTAQEPSLFVRSD---VTRSPLSSLSAS-CHS--SVLFVRSPRISRLTFASNLPL
+SWLFK------------------------------
+>gi|119175703|ref|XP_001240035.1| predicted protein [Coccidioides immitis RS]
+--------------------------------------QNWKASTCTIKEICHFQSSIKLILLVALFQQLVQEITLSChqEHEYYWQHTAIESLQKAAEV
+ILCALFECKSLLAmaptiilsnigfviamVHHKCVTVNTNNMKLIL-------
+>gi|115388761|ref|XP_001211886.1| predicted protein [Aspergillus terreus NIH2624]gi|114195970|gb|EAU37670.1| predicted protein [Aspergillus terreus NIH2624]
+ARTSQTARKRTGPPRPRNT------TH-------DFTDHSNKTYTVVDPFQRRCP--NPHVITKLSIHLY-------SLGPLQPspeaigqellKSNDII
+DWANARNWWprvdVYSPLDSIEACIEHHRREKTFRK-------------
+>gi|195124333|ref|XP_002006648.1| GI21176 [Drosophila mojavensis]gi|193911716|gb|EDW10583.1| GI21176 [Drosophila mojavensis]
+---------------------------------------PFRRAQKFKREVRLLQRTPNFMIPRISFGRVVREIMLErcdCEPHFRITMGALEALQTATE
+MFLTQRFQDSYMMTMHRQRVTLELRDMALMAFICK---
+>gi|239613301|gb|EEQ90288.1| predicted protein [Ajellomyces dermatitidis ER-3]
+--------------------------------------------CKSLHEICFYQKSENFIFLKIIFTHLVCEIDEK---NHQFQYSILNTIQVTAEFTL
+ITLFKYNIKIITYYSHITLTVRDIQLMINIA----
+>gi|327409929|ref|YP_004347349.1| histone H3-like protein [Lausannevirus]gi|326785103|gb|AEA07237.1| histone H3-like protein [Lausannevirus]
+----------------------------------------------NMQEIRKQQRQTCMIIPKARFRDIAKEIVDRELEGVRLSEKALDLLQLIVESLT
+VRLLEKAVALTLEAQKDRVTGRSIEAIFKI-----
+>gi|308503172|ref|XP_003113770.1| hypothetical protein CRE_26460 [Caenorhabditis remanei]gi|308263729|gb|EFP07682.1| hypothetical protein CRE_26460 [Caenorhabditis remanei]
+--------------------------------------RKQKRQSKIYREIVYEKMSTKFAIPPEDFRDVVDEIMEEEFPDHQIETGAIMALQHESEMML
+TKMMCLASHLADYADRETLRKKDIDFLKF------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+P 121 3389 * 5189 4944 * 5126 * 6075 3747 4303 * 7514 1794 5261 3468 3920 4205 2781 * * 121
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+
+K 122 6466 * 4162 4344 * 6969 * * 1162 * * 6259 6366 6064 1806 5368 3958 6156 * * 122
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+
+G 132 5989 * 4532 4783 * 762 6418 * 3982 5449 * 4176 * 4386 3687 5997 * * * 5582 132
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+
+E 133 5034 * 2844 1650 * 6084 5241 3230 5101 3779 5890 4628 7255 4583 3172 * 6604 6085 * 5623 133
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+R 134 * * 4455 3690 5261 3608 4195 4948 4936 4223 6030 3997 4786 3356 2283 4001 6319 3672 6775 5996 134
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+A 135 2376 * 3808 4547 3985 3656 5433 2627 * 4869 4986 4912 5308 4164 5265 4754 3845 * * 4240 135
+ 0 * * 0 * * * 3656 0 0
+
+//
+�HHsearch 1.5
+NAME c5753ae3727f4c7fc5433d2395780f60
+FAM
+FILE c5753ae3727f4c7fc5433d2395780f60
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:38:21 2013
+LENG 115 match states, 115 columns in multiple alignment
+FILT 131 out of 1126 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
+ECCHHHEEECCEECC
+>ss_conf PSIPRED confidence values
+9889999758888789999999999999997939165999998787889689899659999999708999999999999999999986939210999999
+989899478889886
+>Consensus
+MPxixixtnxxxxxxxxxlxxxxxxxxxxxlxkpxxxixvxxxxxxxxxxxgxxxpxxxvxixxxxxxxxexxxxxxxxixxxlxxxlgixxxxixixxx
+exxxxxwgxxGxtxx
+>c5753ae3727f4c7fc5433d2395780f60
+MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYY
+DMNAASVGWNNSTFA
+>gi|224543411|ref|ZP_03683950.1| hypothetical protein CATMIT_02614 [Catenibacterium mitsuokai DSM 15897]gi|224523666|gb|EEF92771.1| hypothetical protein CATMIT_02614 [Catenibacterium mitsuokai DSM 15897]
+MPYLALRTNKTLTLSQEvELKTTVGKLITMFPGESVDTFMIHIEDNQLIYFKGQEANCMMITLYLKGHYTDEQKEQFVAELTKALVKITKIPASNQYVTI
+SEFE--KWGHGGVYE-
+>gi|291545105|emb|CBL18214.1| hypothetical protein RUM_22010 [Ruminococcus sp. 18P13]
+MPICQLKTNYPMDAAArEALLLDTATTAAELLNKPLAAVMAMLD-PCDMRMNGTDDTVFFAEFRYV--LPPEfsKekqafLDRFADRMLALFRQHTGVDP
+HRIYMQFTEMAREsAWKY------
+>gi|55380103|ref|YP_137952.1| tautomerase [Haloarcula marismortui ATCC 43049]gi|55232828|gb|AAV48246.1| tautomerase [Haloarcula marismortui ATCC 43049]
+MPLLQFDIARTLSdAAKTSLAERVTEFYTTEMATTAGHVAVTIRErdPTEMHLGRaVDGPLLFLDAEIRRGRSIDRKRAFALATMEYAAEELDIPDENMK
+VVFTEHPGSAM--------
+>gi|194290744|ref|YP_002006651.1| hypothetical protein RALTA_A2657 [Cupriavidus taiwanensis LMG 19424]gi|193224579|emb|CAQ70590.1| Conserved hypothetical protein; Putative 4-oxalocrotonate tautomerase COG1942 [Cupriavidus taiwanensis LMG 19424]
+MPHIVLHLAGQPDADlTRRSARAIADLTERVLGKQRDVIAVTVQYIphDSWIIADAPlseqgRNAFHLDISVTDETNTKaEKAQFIAAVFEAMSGLLGNL
+HPVSYVHVIDARAAAYGYGGRT--
+>gi|226953011|ref|ZP_03823475.1| transglutaminase-like protein [Acinetobacter sp. ATCC 27244]gi|226836240|gb|EEH68623.1| transglutaminase-like protein [Acinetobacter sp. ATCC 27244]
+MSQIKIYALNQtISQFRPRLSEAIHQALVTSLAYPIEKKFQRFIpmEPENFVYPdDRSDHYVIIEISMFEGRSIEAKQKLIQTIFSNIQNLCDISPQDIE
+ITIFETPKNHWGIRGKN--
+>gi|284042957|ref|YP_003393297.1| 4-oxalocrotonate tautomerase [Conexibacter woesei DSM 14684]gi|283947178|gb|ADB49922.1| 4-oxalocrotonate tautomerase [Conexibacter woesei DSM 14684]
+MPVMDVTYPVGaLTDAArATLVEELTTVLLRAERAPDteffrnvTWVYLHELPGEAVLSAGRpvTAPTFRVDVTVpAGALSDRRKQELVGEATRRVLDAA
+GLTQEhalRVMVLIRDVPEGNWGAAGTVI-
+>gi|322437161|ref|YP_004219373.1| 4-oxalocrotonate tautomerase [Acidobacterium sp. MP5ACTX9]gi|321164888|gb|ADW70593.1| 4-oxalocrotonate tautomerase [Acidobacterium sp. MP5ACTX9]
+MPFARIDLAKGKTPEyRATVADVVYDGIVNVLKAPEGdrFMIIGEHAPDNFVFDPnflniKrTPDLIILQVTStVG-NTKEQKLAFFRHMADELNRRLNV
+RREDVFISLVFVDRDDWSFGN----
+>gi|71282624|ref|YP_270060.1| hypothetical protein CPS_3384 [Colwellia psychrerythraea 34H]gi|71148364|gb|AAZ28837.1| hypothetical protein CPS_3384 [Colwellia psychrerythraea 34H]
+-----------------EAVEKITHSMLKHHGLLGNTVMtpnitahVSVLPKNSTFSGGEEFSGVWMEWKvpSFAFASRDIQLAHFADATEIIRALSggK
+QPIEHIYSNVIHTVDGSWNFNGIAM-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 8472 0 0
+
+P 2 5766 * * * * * * * * * * * 140 5490 * 4738 * 6141 * * 2
+ 19 * 6287 * * * * 8463 0 0
+
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+ 0 * * * * 0 * 8483 0 1025
+
+F 4 3250 4349 * * 5692 * * 1655 * 2145 6302 * * * * * 5319 2105 * 6310 4
+ 0 * * * * * * 8506 0 0
+
+I 5 5041 * 4888 3317 * * 4089 4100 3566 4369 4959 3103 * 3272 2961 4196 3330 4606 * 6625 5
+ 0 * * * * * * 8506 0 0
+
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+
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+ 0 * * * * * * 8506 0 0
+
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+
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+
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+
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+
+R 12 2920 * 5146 5559 4452 6442 4793 3290 3902 2754 4637 6712 4243 * 3547 4065 4071 4002 6180 5370 12
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+
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+ 45 5018 * 0 * 1276 768 8463 1286 1570
+
+S 14 3166 * 2357 3394 * * * * 3469 5077 * * 3615 3317 3201 3765 5386 3471 * * 14
+ 31 * 5568 * * 0 * 8467 0 1287
+
+V 15 3280 6448 2816 1947 4261 * * 3838 5028 4772 * 6508 6063 4768 4750 4427 5092 3067 * * 15
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+
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+
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+ 212 2871 * 0 * * * 8518 2615 0
+
+G 18 3080 * 3427 2577 * 3534 6489 5084 3236 * * 4006 6652 3872 4053 3539 3303 * * * 18
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+
+F 19 5022 * * * 1866 * * 2888 * 1256 5580 * * * * 6201 * 3401 6392 * 19
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+
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+
+S 21 4000 * 2965 2940 * 6488 5881 6663 2562 6541 6460 6141 6525 4056 2963 3575 3607 3830 * * 21
+ 0 * * * * * * 8551 0 0
+
+E 22 2858 7064 3599 2153 * 3476 * 5495 3357 4923 * 4871 * 5174 3328 3834 4868 5577 5807 * 22
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+
+L 23 3221 6484 * * 3675 * * 2268 * 1580 * * * * * 5129 4036 2646 * 6384 23
+ 0 * * * * * * 8551 0 0
+
+T 24 3334 5464 * 5350 6326 4104 3311 6636 6141 6668 6602 6511 * * * 1905 1876 5618 * 3895 24
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+
+Q 25 3850 6415 3024 2188 6699 6347 4638 7274 3285 5859 6378 3804 * 3537 3255 4140 5635 5979 * 5572 25
+ 0 * * * * 0 * 8547 0 1022
+
+Q 26 1627 4385 * 5740 4390 5582 5492 3529 6082 2368 5778 * * 6827 5690 6619 5798 2846 * 6619 26
+ 0 * * * * * * 8551 0 0
+
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+
+A 28 1850 4206 * 4947 * 4755 5764 4307 6136 4088 * 6385 6705 * 4190 2191 5137 3138 * 5664 28
+ 0 * * * * 0 * 8541 0 1026
+
+Q 29 3993 * 3223 1705 6691 6497 6489 4717 3077 4791 6727 5654 * 3951 3895 4595 3549 6524 * * 29
+ 0 * * * * * * 8551 0 0
+
+A 30 2686 6110 5728 3713 6521 6248 6597 2884 6081 3461 5776 4725 * * 5031 3937 3474 2352 5522 * 30
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+
+T 31 5709 6848 * 4700 3037 * 6717 3871 * 1284 2892 * 4402 * * 6525 3940 6141 * 4289 31
+ 0 * * * * * * 8551 0 0
+
+G 32 4125 6373 3429 4087 * 1426 4982 * 3255 * * 3263 5828 3689 5578 5559 5781 6559 * * 32
+ 0 * * * * * * 8551 0 0
+
+K 33 3749 6413 5828 * 6511 * * 3932 1195 5060 4381 6539 * * 3714 5516 4959 2747 * 6035 33
+ 10 * 7227 * * * * 8551 0 0
+
+P 34 6501 * 3943 4538 * 4976 * * 5759 * * 5030 714 6238 4702 3250 4898 * * * 34
+ 0 * * * * * 0 8653 0 1000
+
+P 35 3728 * 4291 1649 * 5032 * 4087 3418 4749 4310 5924 3313 4018 5289 4632 5149 6475 * * 35
+ 54 4774 * 2807 222 0 * 8653 1350 1000
+
+Q 36 3972 6164 2501 2393 * 4305 5916 5438 3601 6869 6539 3713 5806 5719 4269 3010 3911 * 7035 * 36
+ 120 3773 7300 1000 1000 * * 8551 1811 0
+
+Y 37 4359 6613 3718 4973 3428 4918 4304 5695 3503 4040 * 5124 * 5978 3295 3880 6691 4174 3932 2803 37
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+
+I 38 5482 5536 * * 4028 * 5550 1753 6034 3617 4499 6246 * 3679 5489 6110 4504 1923 * * 38
+ 0 * * * * * 0 8559 0 1043
+
+A 39 3679 4684 6407 6394 3050 * 5417 4131 * 3829 2145 5119 * 6324 4556 4483 3413 3349 6513 5053 39
+ 30 5615 * 2807 222 * 0 8559 1305 1043
+
+V 40 5030 6738 * * * 6363 * 2622 * 3628 4744 5823 * 4187 * 5467 3972 976 * * 40
+ 0 * * * * * 0 8559 0 1043
+
+H 41 4051 6964 5066 4334 5623 5449 3251 3728 7280 3250 4378 4621 * 3779 3626 4138 2906 4048 6394 6395 41
+ 34 5407 * 1585 585 0 * 8559 1199 1043
+
+V 42 5310 * * 4253 3229 6753 * 2200 * 2191 6792 * 6248 * 6532 6239 * 1981 6110 4161 42
+ 117 3679 * 1000 1000 * * 8551 1844 0
+
+V 43 * * 3312 3163 * * 3252 4168 4125 3252 5935 3972 * 3472 3792 3702 4013 4073 * 5367 43
+ 99 4174 6558 1000 1000 * * 8551 1559 0
+
+P 44 4074 5301 2483 2858 * 4311 4346 * 5789 6622 * * 2189 5380 6420 4817 3184 5418 * 4416 44
+ 76 4829 5966 1000 1000 0 * 8804 1307 1036
+
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+ 129 3862 5921 1397 689 0 * 8810 1746 1076
+
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+ 75 * 4300 * * 0 * 8716 0 1115
+
+L 47 4043 4409 3421 4532 5563 3689 3763 4891 5457 6741 6229 3917 3665 3610 2996 3833 4372 7079 6290 6229 47
+ 0 * * * * 0 * 8687 0 1523
+
+M 48 4813 6241 * * 2790 6442 * 2389 * 2459 1835 6168 * * * * 7622 4069 3979 * 48
+ 134 3897 5524 2051 398 * * 8780 1718 0
+
+A 49 3791 4307 6490 * 4145 4460 4296 3402 * 3517 6654 * * 6491 4525 3325 3032 3294 6225 2949 49
+ 18 * 6304 * * * 0 8923 0 1368
+
+F 50 4530 * * * 1679 * 4832 3344 6497 3076 4739 * 6247 * 2813 4333 * 4074 5568 4101 50
+ 21 6086 * 1000 1000 480 1822 8900 1049 1531
+
+G 51 3042 5210 5573 6824 7118 1197 6125 * 6667 5845 5766 4817 3166 3996 5003 4204 6350 * * 6503 51
+ 38 5253 * 0 * * 0 8736 1194 1060
+
+G 52 3690 6296 3576 6338 5456 833 * * 5582 4319 * 5499 6301 * 3662 5605 5385 * * * 52
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+
+S 53 4853 * 4254 3146 * 6345 6349 * 4093 4568 * 3733 * 4949 2979 2013 2735 4562 * * 53
+ 192 3002 * 311 2367 1094 912 8719 2519 1227
+
+S 54 4799 6383 2708 3534 4892 4807 5524 6432 5269 5404 * 3755 2967 6645 6125 2713 2660 6360 * 6476 54
+ 151 3468 6812 2385 306 * 0 8736 1903 1060
+
+E 55 3288 * 2132 2263 * 4488 * 6541 4219 4209 * 4859 5310 4450 3698 5358 5018 4051 * * 55
+ 127 3567 * 684 1405 1269 773 8731 1924 1194
+
+P 56 4143 * 3258 4006 6406 4924 5378 * 5450 5003 * 3363 1116 6618 6358 5384 4352 * * * 56
+ 0 * * 0 * 0 * 8737 1060 1060
+
+C 57 2352 2718 * * 4484 4241 5734 5749 6272 3277 4320 * 6950 6338 6626 4133 3993 3220 5401 3844 57
+ 0 * * * * * * 8910 0 0
+
+A 58 1588 4076 * * 4860 4066 * 3732 * 4518 4724 * 4206 * * 6375 3723 2452 * 4947 58
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+
+L 59 6388 6388 6384 * 2284 6887 4822 3064 * 2990 3733 6931 * 4794 4636 5887 5195 3494 5528 2687 59
+ 0 * * * * 0 * 8886 0 1060
+
+C 60 4085 5053 * * 4410 5643 * 2152 * 2802 3728 * 6106 * * * 6784 1519 * 5179 60
+ 0 * * * * * * 8917 0 0
+
+S 61 6878 * 3878 1920 5647 * 4035 6538 4941 6159 5642 3117 * 3548 3789 3203 3534 4922 * * 61
+ 0 * * * * * * 8917 0 0
+
+L 62 4682 4698 * * 5125 * * 1525 * 2518 5300 * * 6202 * * 6545 1634 * * 62
+ 29 * 5661 * * * * 8917 0 0
+
+H 63 4375 5029 4183 3355 5076 * 5329 4890 2513 5859 * 4543 * 4000 3529 3992 2675 3936 * 6518 63
+ 88 4292 6939 915 1090 0 * 8914 1587 1234
+
+S 64 3405 4734 * * 5938 5739 * 3395 * 2609 4040 4750 * * 5269 2060 4091 3221 5264 5762 64
+ 145 3686 5808 0 * 0 * 8913 2245 1000
+
+I 65 3678 * * * 3576 6902 * 2073 7130 3291 4378 6327 6458 7198 4214 3864 3200 3607 5201 3979 65
+ 31 * 5572 * * 902 1106 8909 0 1160
+
+G 66 3375 6617 4555 3453 6056 1446 7117 * 5117 6481 * 3824 3590 6462 4178 4309 5333 5437 6414 * 66
+ 207 3733 4095 388 2086 1600 577 8871 1928 1317
+
+K 67 4527 * 5423 4245 * 1248 * 5983 4069 4469 5750 4035 5129 4712 5893 4451 5008 3677 6681 6501 67
+ 58 5161 6450 283 2488 0 * 8902 1230 2335
+
+I 68 5909 * 6637 5982 3348 5374 6611 3310 6095 2436 4556 6863 5054 * 1823 4658 3878 4553 * 6560 68
+ 0 * * * * * 0 8906 0 1029
+
+G 69 4036 * 2923 6935 * 3032 6041 * 4715 7101 * 3387 4123 4984 6917 2176 2370 6862 * * 69
+ 18 6334 * 0 * * 0 8906 1115 1029
+
+G 70 3348 * 3725 3876 6915 5489 5567 4070 4183 3991 * 5176 2483 4433 3414 5233 3545 4218 * 5946 70
+ 19 6259 * 0 * 0 * 8933 1053 1029
+
+A 71 3293 * 2862 1402 5577 5232 * 5724 3845 5833 * 5716 5626 5718 5433 3486 4347 6856 * * 71
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+
+Q 72 3324 * 5246 3004 6947 6046 5911 5514 4185 3428 5774 4756 * 1940 4368 5289 3489 4299 * 6678 72
+ 28 6586 6879 2322 322 * * 8949 1036 0
+
+N 73 6445 6400 6791 6564 5455 * * 4880 1509 4564 * 2091 4917 5601 3200 6637 3883 5930 * 6042 73
+ 38 5250 * 1534 611 0 * 8949 1278 1030
+
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+
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+
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+ 0 * * * * * * 8949 0 0
+
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+ 20 * 6211 * * * * 8949 0 0
+
+K 78 2235 * 4767 3649 * 4580 6069 5593 1941 4868 * 6792 6538 4161 3655 3709 4821 4963 * * 78
+ 0 * * * * * 0 8891 0 1043
+
+L 79 2101 * 4625 2408 6633 4310 6397 6833 2865 3646 5680 5604 6756 5825 3469 6836 4710 4816 * * 79
+ 0 * * * * * 0 8891 0 1043
+
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+ 0 * * * * 0 * 8891 0 1043
+
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+ 11 * 7056 * * * * 8949 0 0
+
+G 82 3138 5517 2108 2128 * 6135 5925 * 3623 * * 5347 5594 4993 3066 4223 4564 * * * 82
+ 15 6584 * 0 * 0 * 8949 1021 1023
+
+L 83 2778 * 7233 4045 2707 * 5952 3343 6769 2374 5720 5049 6417 7004 4758 4479 4508 4256 * 3829 83
+ 11 * 7037 * * * * 8949 0 0
+
+L 84 4011 5819 * * 3637 * * 2475 * 1422 3664 * * * * 5026 4489 3100 * 5947 84
+ 28 5704 * 1036 965 0 * 8952 1199 1018
+
+A 85 2316 5782 6832 3002 * 6155 3802 * 3749 5075 5629 5812 * 3368 4915 3309 3831 3499 * 5062 85
+ 0 * * * * * * 8949 0 0
+
+E 86 3211 * 4037 1938 * 5264 * * 2613 * * 3844 5922 3292 3425 4996 3879 * * * 86
+ 11 * 7052 * * * * 8949 0 0
+
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+ 0 * * * * 0 * 8948 0 1000
+
+L 88 3455 4729 * * 3717 6850 * 5305 * 699 5844 * 5487 * 6945 5751 4095 6875 * 6432 88
+ 54 4772 * 820 1206 * * 8949 1435 0
+
+R 89 4666 * 3394 4739 * 1124 4698 * 3420 6871 * 3540 5751 5987 5082 4415 6763 6211 * 6779 89
+ 0 * * * * * * 8949 0 0
+
+I 90 4341 4644 * * 6856 5708 5911 1685 4737 2689 * 5112 * * * 5439 5349 1916 * 5564 90
+ 0 * * * * * * 8949 0 0
+
+S 91 4401 * 3086 3311 * 4459 6046 * 4609 4887 * 4596 1499 4572 4702 3380 5205 * * * 91
+ 34 6628 6211 0 * * * 8949 1028 0
+
+P 92 3457 * 5191 4847 * 4092 5168 4719 3306 4131 * 6691 1516 3932 3882 4245 6682 * * 6777 92
+ 12 6898 * 0 * * 0 8891 1000 1043
+
+D 93 4317 * 2214 1949 * 4603 5743 6499 6990 6487 * 3112 5714 3358 6591 3683 4804 6633 * 5712 93
+ 36 5343 * 1585 585 * 0 8891 1350 1043
+
+R 94 3756 * 2953 6811 * 6108 4918 * 5223 5125 7107 3423 6712 4342 1408 3490 5080 5865 * 6260 94
+ 0 * * * * 0 * 8891 0 1043
+
+V 95 6633 4366 * * 4108 4633 * 1516 * 4386 5331 6545 * * * 5191 3517 1827 6192 * 95
+ 0 * * * * * * 8949 0 0
+
+Y 96 * 6587 5922 5840 3238 6850 5415 4571 5094 3973 4360 5594 * * 3595 5259 3669 3167 5022 1818 96
+ 15 6569 * 0 * * * 8949 1021 0
+
+I 97 * 6660 * * 4569 6430 * 1244 * 3441 4424 * * * * 5303 4628 1691 * * 97
+ 0 * * * * * * 8917 0 0
+
+N 98 4915 6809 6034 4490 4620 5617 4648 3697 3855 2988 5058 2875 * 4246 4851 3854 4301 3097 * 4853 98
+ 0 * * * * * * 8917 0 0
+
+Y 99 6554 5987 * * 1346 * * 2236 * 2924 5312 * * 6607 * * * 3595 * 3081 99
+ 0 * * * * * * 8917 0 0
+
+Y 100 4962 * 3861 3069 4700 6174 3456 4500 4416 4516 * 4189 * 3940 3701 5575 3047 3304 7038 4212 100
+ 0 * * * * * * 8917 0 0
+
+D 101 5544 7045 2431 1413 5811 5931 5560 6570 * * * 3631 3260 5087 4819 4894 4861 5263 * * 101
+ 0 * * * * * * 8917 0 0
+
+M 102 4073 7158 * 5455 6511 6172 4757 2512 6031 2464 4032 3702 5592 4995 5404 7011 4248 2361 * 6881 102
+ 0 * * * * * * 8716 0 0
+
+N 103 5020 * 2752 2963 * 4470 5819 6763 4283 6041 * 4864 1976 5626 4616 3306 4127 5051 * 5975 103
+ 118 6151 3948 2000 415 * * 8683 1023 0
+
+A 104 2321 * 3594 4673 * 4511 5714 * 3328 4033 5642 6951 2399 6664 3408 4074 4398 5881 * 6834 104
+ 0 * * * * * 0 8546 0 1793
+
+A 105 3601 5300 3416 1964 * 3022 3732 6851 4780 5959 * 5867 5454 5000 6062 3762 3939 6789 4558 7343 105
+ 17 6416 * 0 * 0 * 8546 1036 1793
+
+S 106 3644 5414 2638 3922 6006 4282 3621 6288 * 4950 4553 1977 * 4360 5407 4585 4643 6179 * 6370 106
+ 0 * * * * * * 8656 0 0
+
+V 107 5485 6002 * 6152 3627 * * 2990 * 5511 4703 5761 * * 5863 * 5106 3426 1124 3957 107
+ 27 6995 6529 0 * * * 8642 1000 0
+
+G 108 2119 * 6417 * * 922 * * 6537 6679 7075 5415 * 5965 6080 3136 * 6264 * 5562 108
+ 0 * * * * * 0 8593 0 1026
+
+W 109 4430 5771 * 5872 2507 5889 6694 2796 3838 4240 5657 4907 * * 5176 5097 3574 3625 3819 3279 109
+ 0 * * * * 0 * 8579 0 1026
+
+N 110 3546 * 3207 * * 1629 6673 6057 3567 5845 * 2461 6459 4583 4498 3996 * * 6108 * 110
+ 0 * * * * * * 8579 0 0
+
+N 111 7024 6082 3866 5811 * 436 5675 * 6430 6921 * 4407 * 6370 5498 6287 7002 * * 6542 111
+ 46 6138 5842 1000 1000 * * 8544 1017 0
+
+S 112 5195 * 5399 4582 * 3318 4822 5800 2774 * 4546 6212 5191 5718 3030 3443 2430 3532 * 5754 112
+ 19 6277 * 0 * 0 * 8461 1037 1083
+
+T 113 4490 * * * 5561 * 5506 4339 5915 2073 * 4473 5401 6205 * 4806 1123 4982 * * 113
+ 0 * * * * * * 8123 0 0
+
+F 114 5010 * * * 1838 * 4998 2558 5601 2571 3666 5670 * * * 5343 * 3518 5321 3964 114
+ 175 3130 * 2193 356 * * 7664 1269 0
+
+A 115 1203 * 4883 4922 * 3071 4400 * 2902 * * * 4798 4613 * 3039 * * * * 115
+ 0 * * 0 * * * 6264 0 0
+
+//
+�HHsearch 1.5
+NAME c582c9c4daca574c1be2935ee4ecc45f
+FAM
+FILE c582c9c4daca574c1be2935ee4ecc45f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:25:17 2013
+LENG 53 match states, 53 columns in multiple alignment
+FILT 117 out of 808 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
+>ss_conf PSIPRED confidence values
+99867688467768999999999999990999999999999999873367899
+>Consensus
+xxxmxkxxxxxlRipxelxxxlxxxAxxxgxSlnxxIxxxlxxxlxxxxxxxx
+>c582c9c4daca574c1be2935ee4ecc45f
+MKGMSKMPQFNLRWPREVLDLVRKVAEENGMSVNSYIYQLVMESFKKEGRIGA
+>gi|303241486|ref|ZP_07327988.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]gi|302590995|gb|EFL60741.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
+---MAEKKTVLLRLNPKTWEELSCWAEDEFRSINGQIEYILHDAIQKRKKA--
+>gi|159028551|emb|CAO87359.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
+------MK-LSTNIPDVLYQQIETLANKQNIPVEQLVTMALSAQI--------
+>gi|260662424|ref|ZP_05863319.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]gi|260553115|gb|EEX26058.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
+---------mvshqLTISLDEDAFRALEKRAQSERRPLEEVAASLLTTASKVP-----
+>gi|331698714|ref|YP_004334953.1| hypothetical protein Psed_4962 [Pseudonocardia dioxanivorans CB1190]gi|326953403|gb|AEA27100.1| hypothetical protein Psed_4962 [Pseudonocardia dioxanivorans CB1190]
+-------SRINFRPPESLKARIEEAAGREGLSVNAWLVRAATTALEA------
+>gi|291619469|ref|YP_003522211.1| hypothetical Protein PANA_3916 [Pantoea ananatis LMG 20103]gi|291154499|gb|ADD79083.1| Hypothetical Protein PANA_3916 [Pantoea ananatis LMG 20103]
+----GKSPTFQIRINPELREQLDQEAAKDQTTLANWFKELARDELKRRG----
+>gi|153869106|ref|ZP_01998794.1| HicB family protein [Beggiatoa sp. PS]gi|152074343|gb|EDN71207.1| HicB family protein [Beggiatoa sp. PS]
+-------DQIMVPVSPEIHRNLVIQAIKSGVSLNKLAMAKLSQ----------
+>gi|163868137|ref|YP_001609341.1| hypothetical protein Btr_0949 [Bartonella tribocorum CIP 105476]gi|161017788|emb|CAK01346.1| hypothetical protein BT_0949 [Bartonella tribocorum CIP 105476]
+-----KEASMNIRLPQALMKALKEKAKNQAIPYTRYVRHLIEQDLRKSH----
+>gi|197262440|ref|ZP_03162514.1| putative ABC-type transporter [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23]gi|200388356|ref|ZP_03214968.1| putative ABC-type transporter [Salmonella enterica subsp. enterica serovar Virchow str. SL491]gi|205357922|ref|ZP_02574237.2| putative ABC-type transporter [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701]gi|197240695|gb|EDY23315.1| putative ABC-type transporter [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23]gi|199605454|gb|EDZ03999.1| putative ABC-type transporter [Salmonella enterica subsp. enterica serovar Virchow str. SL491]gi|205328748|gb|EDZ15512.1| putative ABC-type transporter [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
+----ESNERLSLRVSTDAKKLIVRAAAIQQTNLTDFVVSNILP----------
+>gi|342899959|ref|ZP_08721781.1| hypothetical protein SmacN1_00909 [Streptococcus macacae NCTC 11558]
+-------VPTSVRLSDELNEKLTLWTNSHNISKSEFIAQVLAEKLEDLSDI--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 2715 0 0
+
+K 2 2849 * * * * * * * 1474 2449 * * * 2572 * * 2738 * * * 2
+ 0 * * * * * * 3026 0 0
+
+G 3 2681 * * * * 1740 * * 2070 * * * * 2683 2728 * * * * * 3
+ 0 * * * * * * 3293 0 0
+
+M 4 4022 * * * * 4505 * * * * 251 * * * * * * 4205 * * 4
+ 0 * * * * * * 4586 0 0
+
+S 5 3726 * 3488 3027 * 3264 * * 2713 5105 * 5031 3515 5499 5486 2515 3804 5802 * * 5
+ 0 * * * * * * 6512 0 0
+
+K 6 * * 4597 3290 * 4826 * 5414 1297 * * 3472 4459 3568 4669 3582 4378 * * * 6
+ 81 * 4196 * * * * 6646 0 0
+
+M 7 5985 * 2996 4219 * * 5608 3918 3876 4407 2501 3302 4768 4323 5253 3974 2912 5985 * * 7
+ 0 * * * * * 0 6825 0 1398
+
+P 8 3094 * 4073 3188 * 4015 6473 4907 2628 * * 5271 3793 5315 3886 3151 3780 4223 * 5988 8
+ 28 * 5689 * * 0 * 7140 0 1398
+
+Q 9 5427 * 5791 5242 * 6407 5388 7185 3045 * 6154 5110 4061 2517 2458 3226 2513 6838 * 5787 9
+ 12 6914 * 2037 403 0 * 7167 1074 1011
+
+F 10 6190 * * * 2297 * * 2303 4680 2007 3962 * * * * 6858 3833 3540 * 3980 10
+ 0 * * * * * * 7239 0 0
+
+N 11 4925 * 5080 6801 * 5895 4344 5398 6088 4768 4756 2755 5175 3423 5407 3080 1727 5056 * 7083 11
+ 0 * * * * * * 7239 0 0
+
+L 12 4817 * * * 4014 * * 1961 * 1293 6151 * * * * * 6211 2251 * * 12
+ 0 * * * * * * 7239 0 0
+
+R 13 * * * 5505 * * 5248 * 3788 * * 5008 6205 5510 401 6579 4475 * * * 13
+ 80 4220 * 0 * * * 7239 1311 0
+
+W 14 * 5830 * * 4612 * * 1449 * 1741 3743 * 5904 * * * 4640 3018 6706 6445 14
+ 0 * * * * * * 7239 0 0
+
+P 15 6137 * 2921 5901 * 4667 5932 * 7095 6806 * 4433 1145 5828 5817 2695 3706 * * * 15
+ 0 * * * * * * 7239 0 0
+
+R 16 3660 5719 2772 2716 * 6813 4976 * 3977 5181 6836 5061 1849 5170 4476 4213 5127 * * * 16
+ 0 * * * * * * 7239 0 0
+
+E 17 4185 * 2456 1312 7421 4172 5606 6872 4231 6269 * * 6764 5814 5811 3319 5989 5571 6230 6940 17
+ 0 * * * * * * 7239 0 0
+
+V 18 4952 * 6619 5213 * * * 3481 4463 919 3842 6762 * 4974 6771 5311 4531 3675 * * 18
+ 0 * * * * * * 7239 0 0
+
+L 19 6248 * 4107 6167 4503 7271 2092 5779 1775 3816 5359 6285 * 5781 3721 6894 * 5058 6430 3896 19
+ 0 * * * * * * 7239 0 0
+
+D 20 2986 * 4006 1940 * 6890 * * 2789 5687 * 4608 6122 3663 2705 4228 4739 * * * 20
+ 0 * * * * * * 7239 0 0
+
+L 21 3080 * 4470 3307 * * 5830 5043 2355 3252 4423 6205 * 3636 3003 4589 4876 6098 4984 * 21
+ 21 6122 * 0 * * * 7239 1018 0
+
+V 22 3630 * * * 4857 * * 2075 * 1092 4200 * * * * * * 3163 * 6354 22
+ 0 * * * * * * 7239 0 0
+
+R 23 3148 * 5030 2200 6725 * * 6051 2515 5276 5280 4737 * 4579 3402 4221 3758 3532 * * 23
+ 0 * * * * * * 7239 0 0
+
+K 24 3594 6430 5947 2276 5986 6821 5836 3880 2802 5790 4255 5200 * 3450 3015 5968 5511 4698 * 4637 24
+ 0 * * * * * * 7239 0 0
+
+V 25 1804 6794 * 4516 6354 * 5896 3758 3892 2827 5567 5812 * 4766 3406 6176 * 3557 4461 4813 25
+ 0 * * * * * * 7239 0 0
+
+A 26 155 * * * * * * * 6122 * 5625 * * 6445 * 4545 6285 * * * 26
+ 0 * * * * * * 7239 0 0
+
+E 27 2531 * 4804 2397 6616 5845 * 6205 2084 4801 6794 4491 * 3324 4046 4377 6142 6362 * * 27
+ 0 * * * * * * 7239 0 0
+
+E 28 3739 * 4686 2980 4982 * 5830 4306 2587 3594 5329 4034 * 3642 3340 3839 6936 5707 * 4364 28
+ 21 6122 * 2000 415 * * 7239 1018 0
+
+N 29 3755 6339 2960 2157 4979 * 3819 6750 4280 5937 7112 2659 * 3654 5460 3420 5639 * * * 29
+ 0 * * * * * 0 7204 0 1018
+
+G 30 6612 6186 4266 5523 5339 1110 3787 * 4581 7168 6274 2691 * 4619 4048 5361 * * * * 30
+ 33 5482 * 0 * * 0 7204 1087 1018
+
+M 31 6644 6227 * 5636 * * * 2557 3666 4355 4095 6634 6700 4746 1840 6270 3254 2772 * * 31
+ 0 * * * * * 0 7204 0 1018
+
+S 32 5177 * 6122 * * * * * 5013 * * 5766 3999 * * 498 2855 * * * 32
+ 0 * * * * 0 * 7204 0 1018
+
+V 33 6030 * * 6445 4091 * * 2748 4108 1571 3203 * * 5895 5828 6133 5168 2600 * 5567 33
+ 0 * * * * * * 7239 0 0
+
+N 34 3696 * 4435 4610 * * 6133 * * * * 891 * 5846 * 2628 3282 * * * 34
+ 0 * * * * * * 7239 0 0
+
+S 35 2576 * 3738 3496 * 4509 * * 3053 6230 * 3301 * 2450 5083 3187 4674 6725 6803 6717 35
+ 0 * * * * * * 7239 0 0
+
+Y 36 4339 * * 3001 2221 * * 5298 * 2241 5739 * * 4334 * * 4725 5075 2893 3268 36
+ 0 * * * * * * 7239 0 0
+
+I 37 4460 4909 * * 5684 * * 1098 * 3025 4493 * * * * * * 1974 * 6275 37
+ 0 * * * * * * 7239 0 0
+
+Y 38 4181 5070 5231 2727 5828 * * 3366 3594 2641 5595 4489 * 4771 4104 5373 4830 2729 * 6706 38
+ 0 * * * * * * 7239 0 0
+
+Q 39 3655 * 5123 2631 4690 5338 4362 7031 4514 4620 4874 4421 * 3027 3684 3252 4161 5003 * 4237 39
+ 22 6057 * 2585 263 * * 7237 1021 0
+
+L 40 1566 6570 * * * * 6481 2989 4754 2007 6074 6281 * 6284 3704 5902 6043 3926 * 6183 40
+ 0 * * * * * * 7264 0 0
+
+V 41 3610 5550 * * 5936 6116 * 2080 * 1381 6884 * * * * 4933 5261 2487 * * 41
+ 86 4103 * 1319 739 * * 7264 1474 0
+
+M 42 3307 * 4149 2584 7124 * 6418 4235 4196 3652 4550 7067 * 4240 3269 3399 3573 3995 * 5545 42
+ 0 * * * * * * 7210 0 0
+
+E 43 3397 6385 3185 1745 * * 5792 * 3016 6010 * 4776 5078 3281 3571 5103 4739 6976 * * 43
+ 0 * * * * * * 7125 0 0
+
+S 44 2468 * 3947 3109 5342 6615 6618 * 2771 5457 * 5683 * 3525 5470 2826 4560 * 6637 3297 44
+ 22 6044 * 0 * * * 6828 1002 0
+
+F 45 3760 5997 * * 3288 * * 2877 * 1388 4346 * * * 6302 4972 6005 2869 6256 5032 45
+ 17 * 6413 * * * * 6840 0 0
+
+K 46 * 4903 3753 1569 * 3066 * * 2676 * * 4793 6306 3927 3129 4304 * * * * 46
+ 0 * * * * 0 * 6613 0 1000
+
+K 47 3429 * 3714 3643 * 4133 4791 6311 2658 4697 * 4832 5102 3507 2511 3995 5987 4573 * * 47
+ 0 * * * * * * 6609 0 0
+
+E 48 4320 * 4691 1500 5659 * 5938 * 3398 4550 * 5845 3281 3832 3467 3964 4682 * * * 48
+ 0 * * * * * * 6282 0 0
+
+G 49 5500 * 4193 5179 * 1928 3564 4978 3378 * * 3331 * 5300 4327 2993 5175 4188 * 4737 49
+ 0 * * * * * * 6031 0 0
+
+R 50 * * 2200 3957 4270 * * * 3125 * * * 4292 * 2178 3331 * * * 2473 50
+ 0 * * * * * * 4949 0 0
+
+I 51 4006 * * * * * * 1473 3005 2083 * * * * * * * 2205 * * 51
+ 0 * * * * * * 4949 0 0
+
+G 52 * * * * * 1556 * * * * * * 1556 1645 * * * * * * 52
+ 0 * * * * * * 2163 0 0
+
+A 53 0 * * * * * * * * * * * * * * * * * * * 53
+ 0 * * 0 * * * 1624 0 0
+
+//
+�HHsearch 1.5
+NAME c5863f5030b5a39b990f9179f7f8cfae
+FAM
+FILE c5863f5030b5a39b990f9179f7f8cfae
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:56:09 2013
+LENG 134 match states, 134 columns in multiple alignment
+FILT 107 out of 511 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCEEEEEEEEECCEEEEEEECC
+CCCEEEEEEEECCEEEEEEEECCEEEEEEEEECC
+>ss_conf PSIPRED confidence values
+9742189999974598999988399899999886289889999929989999960785389999879648876148999799999999599999999699
+8868999999999999999999999999999749
+>Consensus
+xxxxxGxwklxxseNxdexLxxxGvxxxxrkxxxxxxpxxeixxxgdxxxixxxxxxxtxxxxfxlGxefeexxxxxxgxxxkxxxxxegxklvxxxxxx
+xxxxxxxrxixxxxlxxtxxxxxvxxxrxyxrxx
+>c5863f5030b5a39b990f9179f7f8cfae
+PVDFNGYWKMLSNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGE
+KEGRGWTQWIEGDELHLEMRAEGVTCKQVFKKVH
+>gi|399472|sp|P31417.3|FABP2_MANSE RecName: Full=Fatty acid-binding protein 2; Short=FABP 2gi|159512|gb|AAA29314.1| fatty acid binding protein 2 [Manduca sexta]
+-SYLGKVYSLVKQENFDGFLKSAGLSDDKIQALVSDKPTQKMEANGDSYSITSTGIGGERTVSFKSGVEFDDVI--GAGESVKSMYTVDGNVVTHVVKGD
+AGVATFKKEYNGDDLVVTITSSNWDGVARrYYKA-
+>gi|307178371|gb|EFN67116.1| hypothetical protein EAG_12099 [Camponotus floridanus]
+---VVGKYQYITSENLDEFLKDINKSEFSGILKSALTVEVQV-NDDQSFTVTITNPERSVTNTFKLGEVYDEWFPSQK-VPFKSVATKHDLGFQSETSLS
+pdlKLIRIYEFTGTQLIAVSAVFNTEECNNSYLI---
+>gi|310693845|gb|ADP05225.1| fatty acid-binding protein 1 [Eriocheir sinensis]
+-MSIAGKYVLSGNEKYADWLSAVGIPADLAAKLEAAKPSLDVTQSGNDIVIKTTAGDKNFTNTITLGKESQA--TLPGGIEYTVKLTLSGTTLNGTWDFg
+GKTG-TATVEFTADGVTQTMIYNNIASKRIYSRQ-
+>gi|107051720|gb|ABF83552.1| fatty acid binding protein [Branchiostoma belcheri tsingtauense]
+--VDKfcGTWKHgSHSDNYLQMMEKFGMSAEMLKKIQESTFPMNASLVGDKLTFKVEFEGKTYENNFTLGVEGEEE--DATsGKKRKVTYTIEGDHLVSV
+YPDpdgKVTSRVCRHFDDDDTIHTDIKAGDVEAWTKSKRC-
+>gi|242020766|ref|XP_002430822.1| fatty acid-binding protein, putative [Pediculus humanus corporis]gi|212516025|gb|EEB18084.1| fatty acid-binding protein, putative [Pediculus humanus corporis]
+---YTKTYRLIKSDNYDAFLREVGAGPLKRKQEVRERPTIQLRQYGNDYVLTMASEHQTKNVKFRPSEKFVQE--GYDGNYVQTIMSFENgNILVEMQMG
+AKPVTILREFFVNGVMEM-MMCEKTVCCRVYSS--
+>gi|308493489|ref|XP_003108934.1| hypothetical protein CRE_11771 [Caenorhabditis remanei]gi|308247491|gb|EFO91443.1| hypothetical protein CRE_11771 [Caenorhabditis remanei]
+--AIIGKWKPISSENLEDYFKVSNLSEICELAWEHGIVC--YEMKDGDLHAHTQLYNKKlNATVLEVGQKNQNK----N-G--TMDCHVENNSLNSIYF-
+seEKELWKVERFIESGQLVIINKREQLQwCKRTYERVE
+>gi|221091788|ref|XP_002161777.1| PREDICTED: hypothetical protein [Hydra magnipapillata]gi|221107985|ref|XP_002167566.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
+--DMVGTWRLESRDpTFNDFLVCRQTRYLLRTIMTTFSADFEYSLSEDKslLTKKTISSFNTNMYPMSTAHDFVPE-KTLSGKPEiGRIFETSGRKVIQE
+MryKSDdSIAAIMEHQVIDGKLHVKLKCENVVCNEIYRRI-
+>gi|325188594|emb|CCA23127.1| conserved hypothetical protein [Albugo laibachii Nc14]
+--NLSGRWSLDRndSDSTNDYLEAMGLPLIARQAADKLDLMVIINQTPGDFVITRRTRIFSETKHLKLGQEVILK---------NNIISIAGDAsqIKTt
+TQlTAYRGLLMDIRSLDeKGRMKVELTLvlpdkPPVTIQRYFKK--
+>gi|313230106|emb|CBY07810.1| unnamed protein product [Oikopleura dioica]
+--EMIGRWQEKSKSNVPEYIDAEEGPYFYQIFAKKMKADIEYEMvAKNVFRSTFyVSWMPPLKYPLRLDMPYEHEN--PTGDAVVSEARfrVEfNDIFVV
+T-KGGHEGTtTTRIQIVNEDLILTSTMleKNVLCERVYTRK-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+ 0 * * * * * * 7767 0 0
+
+A 121 2922 2954 * * 4272 * 6376 3738 3612 4204 4718 5795 5448 6758 4099 4829 4185 2684 4817 4780 121
+ 129 3549 * 1487 637 * * 7767 1735 0
+
+E 122 5318 6415 3470 3002 6327 1764 * * 2754 * * 2975 5527 6360 6174 3532 4980 * * * 122
+ 54 4774 * 1643 557 * * 7675 1267 0
+
+G 123 5618 * 2088 3936 6134 1699 5366 6317 4134 6324 6185 2635 5601 5308 6272 5862 * * * * 123
+ 22 6026 * 0 * * * 7677 1035 0
+
+V 124 * * * 5787 5415 * 5441 2874 4836 3272 * 6687 6705 6750 * 6758 4323 851 5767 * 124
+ 0 * * 1000 1000 * * 7677 1000 0
+
+T 125 4630 5229 5009 3300 7723 * * 3376 4015 5960 * 6548 5368 5367 5230 4113 1910 2336 * 6185 125
+ 38 6259 6292 0 * * * 7677 1035 0
+
+C 126 2103 1738 * * 4358 2832 * 6361 * 4538 * 4948 * * * 3718 4748 4729 * 4654 126
+ 0 * * * * 0 * 7651 0 1006
+
+K 127 6300 5247 * 4390 * * 5467 5449 1533 * * 3778 * 5213 4574 4295 2549 3077 4640 * 127
+ 0 * * * * * * 7619 0 0
+
+Q 128 4498 * * 5879 6299 6025 4653 6249 6510 5222 * 6873 * 4781 575 5054 5536 4723 * 6110 128
+ 0 * * * * * * 7582 0 0
+
+V 129 * * * 4778 3287 * 4658 2476 4207 6535 5389 5439 * 6108 4910 * 3132 2313 4774 2941 129
+ 48 4941 * 0 * * * 7582 1207 0
+
+F 130 5179 * * * 1428 * 4588 * * 4217 * * * * * 3956 * * * 1181 130
+ 0 * * * * * * 7582 0 0
+
+K 131 4370 * 4991 3480 * 6572 6873 4962 1339 5487 * 4403 6108 4739 3681 4506 4365 4023 * 5030 131
+ 0 * * * * * * 7582 0 0
+
+K 132 * * * * * * * * 1244 6009 * * 5801 * 958 5079 * * * * 132
+ 0 * * * * * * 7503 0 0
+
+V 133 2923 4477 * 3930 * 6230 * 2693 4653 4091 5145 * * 3726 5763 * * 1438 * * 133
+ 0 * * * * * * 7056 0 0
+
+H 134 * * * 1201 * * 1729 * * * * 2827 * * * * 3031 * * * 134
+ 0 * * 0 * * * 3341 0 0
+
+//
+�HHsearch 1.5
+NAME c5af58a62688d809a1a0747990141890
+FAM
+FILE c5af58a62688d809a1a0747990141890
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:08:47 2013
+LENG 62 match states, 62 columns in multiple alignment
+FILT 102 out of 698 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+96178999988999999999999999999767999888778999999999999999998738
+>Consensus
+xxxxxrRxxxnxrERxRxxxiNxafxxLrxxiPxxxxxklsKxxiLrxAixYIxxLxxxLxx
+>c5af58a62688d809a1a0747990141890
+TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD
+>gi|308487455|ref|XP_003105923.1| CRE-HLH-10 protein [Caenorhabditis remanei]gi|308254979|gb|EFO98931.1| CRE-HLH-10 protein [Caenorhabditis remanei]
+---TSRRVEANARERNRVQQLSRMFDELRVILPVEAEMKISKLSTLKVASAYIGYLGAIMKD
+>gi|194216475|ref|XP_001917290.1| PREDICTED: LOW QUALITY PROTEIN: oligodendrocyte transcription factor 3-like [Equus caballus]
+----QLRLKnIGEGSETSMKQLELATgKDIARSVIYphGXxXXXXXXXXXXXXARNYILMLTSSLE-
+>gi|71020467|ref|XP_760464.1| hypothetical protein UM04317.1 [Ustilago maydis 521]gi|46100369|gb|EAK85602.1| hypothetical protein UM04317.1 [Ustilago maydis 521]
+-VNANRRVAHLLSEQKRRESINTGFEDLRQAIPACRDGQDSKATILKRALEYIRELEEVVE-
+>gi|213972574|ref|NP_001135435.1| extra macrochaetae [Nasonia vitripennis]
+--------------------VAAYLGKLRDLVPDMPrSRKLSKLEVIQHVIRYICELETTLEK
+>gi|74214926|dbj|BAE33463.1| unnamed protein product [Mus musculus]
+---GERRTTHNIIEKRYRSSINDKIIELKDLVMG-TDAKMHKSGVLRKAIDYIKYLQQV---
+>gi|111119871|gb|AAN76139.2| c-myc [Todirostrum cinereum]
+SEENDKRRTHNVLERQRRNELKLSFFALRDQIPeVANNEKAPKVVILKKATEYVLSIQS----
+>gi|156555495|ref|XP_001604081.1| PREDICTED: similar to daughterless [Nasonia vitripennis]
+--EKERRQANNARERIRIRDINEALKELgRMCMAhMKSEKPQTKLGILNMAVEVIMALEQQVRE
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+T 1 * * * * * * * * * * * * * * * 1554 601 * * * 1
+ 0 * * * * * * 2111 0 0
+
+T 2 * * * 3139 * * * * * * * * * * * 2673 1478 1432 * * 2
+ 0 * * * * * * 3637 0 0
+
+N 3 3692 * 2928 2847 * 5161 * * 3734 5302 * 3354 5245 4936 * 1965 3662 4976 * * 3
+ 0 * * * * * * 4941 0 0
+
+A 4 3454 * 5362 5252 5686 4853 * 4504 2581 * 3945 3909 3477 4804 3776 3362 4751 3285 * 5275 4
+ 0 * * * * * * 5188 0 0
+
+D 5 2976 * 3150 2496 * 5854 5201 5226 2523 * 5999 5853 * 2733 4199 4210 6135 5458 * 6806 5
+ 0 * * * * * * 5519 0 0
+
+R 6 * * 6550 6601 * * 6442 4806 2255 3463 * 5482 6209 3198 1356 5020 5512 * * 4529 6
+ 15 6624 * 0 * * * 5666 1000 0
+
+R 7 * * * * * * 6097 * 3442 * * * 6268 5391 223 * * * * * 7
+ 0 * * * * * * 5739 0 0
+
+K 8 3964 * * 3735 5857 * * 4188 3544 2402 5765 4747 6656 3670 3582 2776 4072 3632 * * 8
+ 37 * 5294 * * * * 5747 0 0
+
+A 9 1717 * * 3923 4975 6432 6446 * 2723 3776 * 4078 6324 4632 3914 5394 2970 5597 * * 9
+ 54 4765 * 0 * 0 * 5728 1197 1073
+
+A 10 1314 * * * * * 1788 4049 5000 * * 4362 * * 3631 4879 4576 * * 6433 10
+ 0 * * * * * * 5745 0 0
+
+T 11 3656 5607 * * * 4837 * 5071 5777 6610 * 609 * * 6095 3633 4154 * * * 11
+ 0 * * * * * * 5751 0 0
+
+M 12 1983 * 4068 2805 6206 5615 * 3812 3791 3920 5005 6357 * 4228 5347 4841 5050 3125 * * 12
+ 0 * * * * * * 5756 0 0
+
+R 13 5288 6515 * * 6564 5031 5705 3546 3496 4420 5172 5369 * 6898 935 4209 5195 * 6686 6980 13
+ 17 6416 * 3170 170 * * 5845 1000 0
+
+E 14 * * * 82 * * * * 5323 * * * * * * 5044 * * * * 14
+ 0 * * * * * * 5807 0 0
+
+R 15 * 6545 5995 5044 * * 5355 * 3140 * * * * 3767 479 * 6126 * * * 15
+ 23 5995 * 3000 193 * * 5807 1029 0
+
+R 16 * * 3997 3441 * 6625 6168 3843 2996 4475 7026 3289 * 3130 2060 5148 3995 6944 5785 * 16
+ 0 * * * * * * 5807 0 0
+
+R 17 * * * * * * 5781 * 6126 * * * * * 210 4154 * * * 4422 17
+ 0 * * * * * * 5807 0 0
+
+L 18 5080 5592 * * * * * 3905 6486 3997 2206 5269 * 5319 1678 6655 5539 2548 * 5242 18
+ 0 * * * * * * 5821 0 0
+
+S 19 4696 7026 4135 3998 * 5976 3287 * 2718 4671 * 4935 * 2388 2995 3312 5115 5388 * 5506 19
+ 0 * * * * * * 5821 0 0
+
+K 20 4045 6503 3569 3021 6533 4738 4260 6444 3006 5894 6737 2986 * 3825 4126 3381 4202 4211 * * 20
+ 0 * * * * * * 5887 0 0
+
+V 21 * * * * 4593 * 6277 1288 * 1723 3046 * * * * 6759 * 3596 * 5620 21
+ 0 * * * * * * 5905 0 0
+
+N 22 5639 * 5639 5143 * 7266 6632 7061 3326 * * 603 * * 3951 4194 5044 * * * 22
+ 0 * * * * * * 5905 0 0
+
+E 23 3952 * 2867 2771 * 4931 5944 * 2798 3061 5554 4678 * 3623 5182 3544 3842 6099 * * 23
+ 0 * * * * * * 5905 0 0
+
+A 24 1171 4933 * 4569 * 3056 6741 * 4084 6073 4232 6473 * 6653 3743 4028 4510 * * 5424 24
+ 0 * * * * * * 5905 0 0
+
+F 25 * * * * 787 * * 3593 * 2670 5563 * * * * * 5143 6303 * 3079 25
+ 41 5143 * 0 * * * 5902 1123 0
+
+E 26 3129 * 2255 2315 5326 4900 6639 4778 3617 5063 5015 4505 * 3983 6737 4169 * 4441 * 6685 26
+ 0 * * * * * * 5902 0 0
+
+T 27 2977 5214 3610 2638 5981 4853 * 4727 3849 4604 5581 5436 6494 * 3416 3839 3462 3713 * 5706 27
+ 0 * * * * * * 5902 0 0
+
+L 28 * * * * * * * 4661 * 79 * * * * * * * 6172 * * 28
+ 48 4935 * 0 * * * 5902 1125 0
+
+K 29 4424 * * 5820 * 5842 * 6260 2005 * * * * 3508 888 * 6583 * * 5855 29
+ 0 * * * * * * 5902 0 0
+
+R 30 4159 6633 2866 3281 * 4619 5428 7069 3011 5664 4880 4166 * 3530 2905 2694 6112 * * * 30
+ 11 6983 * 1585 585 * * 5902 1000 0
+
+S 31 3253 4132 * 5193 * 6983 3161 5281 3888 1955 4295 6579 * 5113 4305 4213 5523 3482 * 4890 31
+ 0 * * * * * * 5902 0 0
+
+T 32 * * * * * * * 1605 * 1495 4143 * 6240 * * * 5369 2169 * * 32
+ 73 4345 * 673 1424 * * 5902 1289 0
+
+S 33 5132 5599 * * * * * 5143 6595 5506 6767 6108 390 * 6653 4068 5466 6469 * * 33
+ 152 3495 6469 0 * * * 5902 1583 0
+
+S 34 4182 6866 4164 5562 4064 4443 4548 4169 3813 4968 5590 3275 4997 5388 5134 3555 3249 3712 6189 3963 34
+ 398 2332 4554 1966 427 0 * 5908 2171 1010
+
+N 35 5311 4257 4450 4645 4330 3354 4968 5035 5760 2481 6620 4266 2726 6739 5697 3995 5838 3852 * 4718 35
+ 287 2806 4736 663 1441 1229 802 5872 1773 1189
+
+P 36 3477 * 6490 4780 4933 3587 5415 * 4413 * * 5245 1614 3115 4165 4119 4166 6171 * 5331 36
+ 394 2125 6640 1766 502 0 * 5734 2410 1292
+
+N 37 6693 * 2168 2886 * 2672 5456 6020 5825 5987 * 2997 5549 5244 4317 3875 4030 4278 * * 37
+ 98 4315 6028 0 * 0 * 5714 1211 1059
+
+Q 38 5168 * 4006 3489 * 5282 * 5315 1626 6229 * 6548 * 3011 3028 4136 3592 6638 * 5291 38
+ 55 4743 * 420 1985 0 * 5789 1187 1000
+
+R 39 5685 * 5371 3889 * * * * 878 * * 5669 5053 4176 2228 6472 6069 * * * 39
+ 50 4863 * 2346 316 * * 5788 1122 0
+
+L 40 3717 * 6961 * 5603 * 6432 4142 6092 1119 3722 * 3791 5155 5814 4423 6559 3430 6917 * 40
+ 0 * * * * * * 5788 0 0
+
+P 41 3658 * 4311 * * * 4935 * 5809 * * 5609 3734 * 6073 771 3019 * * * 41
+ 40 5488 7584 0 * * * 5788 1061 0
+
+K 42 * * * * * * * 6067 410 * * 5195 6492 5110 3278 * 4757 6605 * 6071 42
+ 0 * * * * * 0 5789 0 1000
+
+V 43 2581 5918 * 6211 6492 5253 6830 1955 5311 2558 6227 6902 6067 * * 4142 5335 2548 6957 7210 43
+ 0 * * * * * 0 5789 0 1000
+
+E 44 3112 * 3550 1869 * 3933 6071 5166 3903 5281 5633 5952 * 3748 7029 3258 4472 4593 * 6067 44
+ 0 * * * * * 0 5789 0 1000
+
+I 45 6241 * 5918 * 5283 * 6016 1216 6466 4852 6963 * * * * 6941 1697 2965 * * 45
+ 0 * * * * * 0 5789 0 1000
+
+L 46 6016 * * * * * * 3655 * 226 * 6466 * * * * * 4690 * * 46
+ 0 * * * * * 0 5789 0 1000
+
+R 47 * * 5719 5106 * 6662 6248 * 2319 4422 * 4281 * 2905 1342 4209 4760 * 6439 * 47
+ 0 * * * * * 0 5700 0 1000
+
+N 48 4657 6430 5304 3598 5709 4541 5759 4565 2869 2004 3957 4840 * 5732 3630 3684 * 5991 * 4660 48
+ 0 * * * * * 0 5700 0 1000
+
+A 49 283 * * * * * * * * * * * * * 5807 4094 4659 4010 * * 49
+ 0 * * * * 0 * 5824 0 1000
+
+I 50 3603 6363 * * * * 6481 1076 5109 3872 4620 5830 * * 4564 5375 3102 3612 * * 50
+ 0 * * * * * * 5888 0 0
+
+R 51 3980 5983 3432 2064 * 4682 5692 * 3112 4645 6512 3000 * 4511 4516 3804 4549 5129 6854 * 51
+ 0 * * * * * * 5888 0 0
+
+Y 52 * 6127 * * 5951 * 4668 * * 4423 * * * * 5613 * * 5673 6772 261 52
+ 25 5835 * 0 * * * 5888 1027 0
+
+I 53 * 5951 * * * * * 177 * 5242 5812 * * * * * * 4188 * * 53
+ 0 * * * * * * 5888 0 0
+
+E 54 3888 6642 5078 3912 * 3618 4640 6357 2871 3597 4929 3653 5270 2853 3113 4825 5245 6919 6481 * 54
+ 0 * * * * * * 5888 0 0
+
+G 55 4454 * 4962 3920 3757 4982 3003 5455 4153 4341 4302 6522 * 3920 5956 3922 3252 5371 * 2655 55
+ 0 * * * * * * 5888 0 0
+
+L 56 * * * * * * * 5407 * 170 3840 * * * * 5829 * * * * 56
+ 0 * * * * * * 5796 0 0
+
+Q 57 6931 * 4971 2786 * 4589 6053 5544 4652 4620 6206 4725 * 1539 4696 3661 2802 * * * 57
+ 0 * * * * * * 5781 0 0
+
+A 58 3756 6878 2731 2693 * 4568 5194 * 2948 4761 5582 4161 * 3026 4558 3867 4677 6856 5794 * 58
+ 0 * * * * * * 5770 0 0
+
+L 59 5130 4979 5853 6435 5116 * 5121 3412 3685 2446 3491 * * 3902 4766 4305 3744 2556 * 6608 59
+ 0 * * * * * * 5509 0 0
+
+L 60 * * * * * * * 3586 * 487 5835 * * * * * * 2429 * * 60
+ 0 * * * * * * 5462 0 0
+
+R 61 4237 * 3549 2076 * 5759 4649 * 4911 * 5196 3277 * 2360 2552 5477 * 6101 * * 61
+ 0 * * * * * * 5410 0 0
+
+D 62 * * 1626 2802 * 1790 4990 * 4538 * * * * * * 4261 3098 * * * 62
+ 0 * * 0 * * * 4908 0 0
+
+//
+�HHsearch 1.5
+NAME c5d10a25f4692ab6cc7c072c5ac3efcd
+FAM
+FILE c5d10a25f4692ab6cc7c072c5ac3efcd
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:31:27 2013
+LENG 235 match states, 235 columns in multiple alignment
+FILT 183 out of 1906 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEECCCCCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEEE
+EEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCE
+EEEEEECCCCCCCCCHHHCCCCEEEEECHHHHCCC
+>ss_conf PSIPRED confidence values
+9700217661413674759999998522758999999981599747864899999999999999988615698799998047769999999984999899
+9950578764101244444405553433998357678999999996471030999999999998699399999999866765899997542012479868
+99999464461108610337970999856853269
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgxpxyxdxxxlxxdpxxxxxlxxxlaxxxxxxxxxxdxIvxvxxxGxxlAxxlAxxlxxpxxx
+irkxxxxxxxxxxxxxxrxxxxxxxxxxxxxxxxxxxxgxxVlLVDDvitTGxTlxxaxxxLxxxGaxxvxvxvlxxxxxxxgxxxlxxxxxxxxxgvxx
+xslxxxxxxxxxxxxxcxxxxxxxxxxxxxxxxxx
+>c5d10a25f4692ab6cc7c072c5ac3efcd
+MSLKEIGPNSLLLEDSHSLSQLLKKNYRWYSPIFSPRNVPRFADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVL
+MRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQLVEASGAEVVEMVSILTIPFLKAAERIHSTAGGRYKNVRF
+IGLLSEDVLTEANCGDLNDYTGPRVLSCSDLLVNQ
+>gi|335437281|ref|ZP_08560063.1| adenine phosphoribosyltransferase [Halorhabdus tiamatea SARL4B]gi|334896411|gb|EGM34562.1| adenine phosphoribosyltransferase [Halorhabdus tiamatea SARL4B]
+--------------RET-LAAEIESRIDRD-EE-------GYVDNTAVVFDQSLLDLVAGVAAETFEL--ERPDVVLTAATDGITIAGAMARHFDVPVAY
+AKKS-RETGV----SEFVEARqrltpG--IEITYSLPASALEDGDDVLLVDDFVRSGNTQALLLELADRAGATVSGVFTLIAVGEDG-LASVRQS-----
+TDAPVVAFTTLS----------------------------
+>gi|319891753|ref|YP_004148628.1| ComF operon protein C [Staphylococcus pseudintermedius HKU10-03]gi|317161449|gb|ADV04992.1| ComF operon protein C [Staphylococcus pseudintermedius HKU10-03]gi|323465078|gb|ADX77231.1| competence protein F, putative [Staphylococcus pseudintermedius ED99]
+----------------------------------------------KFLNDVALAKVFAYYIRVkLVK---D--ELIVPMPssqdhdlQRTFNPVQTILH
+HLKLPYVAClKMRPRSKQFALS-RSERYAV----DNPIYFDSDISLENKSILLIDDIYTTGHTAHCAGNVLLQQKVRKLSMLTFAR--------------
+--------------------------------------------
+>gi|315924848|ref|ZP_07921065.1| orotate phosphoribosyltransferase [Pseudoramibacter alactolyticus ATCC 23263]gi|315621747|gb|EFV01711.1| orotate phosphoribosyltransferase [Pseudoramibacter alactolyticus ATCC 23263]
+------------------------SKVLTF-GDFITkSGrkTPYFVN-TGNYKTSEQIAKLGQYYAACIKNHLDGIDFLYGPAYKGIPLVITAAASLyrd
+hhvTIPYCFNRKEAK-------------DHG--EGGHI-I-GYRPQNGDTAMIVEDVITAGTSVKETVPLLKSlaEDVKVARLIISVDRMEKGdGgKTAI
+EEI--ADRFGIATTPIVTVKEIVA--CLHNREVDGRVVI---------
+>gi|217033895|ref|ZP_03439319.1| hypothetical protein HP9810_870g27 [Helicobacter pylori 98-10]gi|216943658|gb|EEC23103.1| hypothetical protein HP9810_870g27 [Helicobacter pylori 98-10]
+----------------------------------------AYSEIEELIKSKYvligsrILPLLSQkagaEFVKILQE--KgltTPLYGIAIDdkiKSFY
+SHSAALLKGFCQGNLkptYgrLRANNTISYAGKS-LEFRANNP----RDFTFKG---DENLDYFLLDDIITTGTTLKEALKYLKNLNIKAHFAIALCSAD
+--------------------------------------------------------
+>gi|309357838|emb|CAP35094.2| hypothetical protein CBG_17449 [Caenorhabditis briggsae AF16]
+-------------------------------------------------------------------------AIIVAKSPGVMNKATSYADRLRLGVAV
+IHGEQKdeeesgledgrqsPPpnvTS---------------YDflpaqeskqkpPLTVV-GDV-GGRIAIMVDDIIDDAQSFVAAAEVLKARGAYKIYVI
+ATHGVLSSMPPLFSKPPRSQsfspetiRKRKPTLFQVIVTNTVPHDlQKmR-CHK---IKTVDVSLMIC--
+>gi|333374604|ref|ZP_08466444.1| purine/pyrimidine phosphoribosyltransferase [Kingella kingae ATCC 23330]gi|332975242|gb|EGK12142.1| purine/pyrimidine phosphoribosyltransferase [Kingella kingae ATCC 23330]
+------------------------------------------------------IHHTVKKIAEQIQASGIQYDAMIAIGGGGFIPARMLRSFVDVPIYA
+VTTAYYLDESG---SGETADEI-QKVQWIDPIPEK-IVGKNILVVDEVDDSRVTAEFVLRELQKENFTEVGFAVIHNKIKE-KRGVIPE-------GVHY
+YAGLEVQ----------------------------
+>gi|339249839|ref|XP_003373907.1| hypoxanthine-guanine phosphoribosyltransferase [Trichinella spiralis]gi|316969883|gb|EFV53918.1| hypoxanthine-guanine phosphoribosyltransferase [Trichinella spiralis]
+----------------------------------------FKPFLDRVLIPFNLIDERISALADMLHQKYlDEDLVLVCVLKGAFRFFSSLYDKLVRirn
+nctgNLyyDFVRLQ-----------SYVDTKS---TGvvQVCMFKpS--FRRKHIVIVEDIVESGKTLEKLNSLVESYEPLSVRYVTLLTKR--------
+------------------------------------------------
+>gi|313905981|ref|ZP_07839335.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]gi|313469165|gb|EFR64513.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
+-----------------------------------------------------MFHALGKKVGEACDG----VGLVIGFAETATAVGMAVAEEMSDDCIY
+IHTTReLVPEENDW-VEFCEEHSHAVEQKLSGSHldQWIKSCKSIVFVDDEISTGKTLINIVSRLKEQypEieEKRLVAASIINRVSEVNEQKMRD----
+--YGLECVSLLKLEE---------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1565 0 0
+
+S 2 * * * * * * * * * * * * * * * 0 * * * * 2
+ 0 * * * * * * 1565 0 0
+
+L 3 * * * * * * * * * 925 * * * * 1079 * * * * * 3
+ 0 * * * * * * 1565 0 0
+
+K 4 * * * * * * * * 925 * * * * * * * * * * 1079 4
+ 0 * * * * * * 1565 0 0
+
+E 5 * * 1079 925 * * * * * * * * * * * * * * * * 5
+ 0 * * * * * * 1565 0 0
+
+I 6 1079 * * * * * * 925 * * * * * * * * * * * * 6
+ 925 1079 * 2322 322 * * 1565 1266 0
+
+G 7 * * * * * 925 1079 * * * * * * * * * * * * * 7
+ 0 * * * * * * 1565 0 0
+
+P 8 * * * * * * * * * * * * 0 * * * * * * * 8
+ 0 * * * * * * 1565 0 0
+
+N 9 * * * * * * 1671 * 1523 * * 1565 * * * * * * * * 9
+ 0 * * * * * * 2152 0 0
+
+S 10 * * * * * * 1671 * 1523 * * * * * * 1565 * * * * 10
+ 0 * * * * * * 2152 0 0
+
+L 11 * * * * 1671 * * * * 1565 * * * * * * * * * 1523 11
+ 0 * * * * * * 2152 0 0
+
+L 12 * * * * 1924 * * 2073 * 1945 * * * * * * 2065 * * * 12
+ 0 * * * * * * 2603 0 0
+
+L 13 * * * * * * * * * 0 * * * * * * * * * * 13
+ 0 * * * * * * 2603 0 0
+
+E 14 1069 * * 1945 * * * * * * * * 1924 * * * * * * * 14
+ 0 * * * * * * 2603 0 0
+
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+
+//
+�HHsearch 1.5
+NAME c73204c4134fbbb074a65e8410643b7c
+FAM
+FILE c73204c4134fbbb074a65e8410643b7c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:56:51 2013
+LENG 137 match states, 137 columns in multiple alignment
+FILT 111 out of 1145 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
+HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9775687665448888657588377999999999871986489888778766654576631575547799999999663202452110145777768500
+1024699999999999999975777789998886659
+>Consensus
+xxxxxxxxxxxxxxxxxxxxxxxxxxxxGxxLfxxxCaxCHxxxxxxxxPxlxxxxxxlxxxxxxrxxxxxlxxxlxxpxxxxgxxxxxxxxxxxxMpxx
+xxxxxxLsxeexxxIxxYlxxxxxxxxxxxxxxxxxx
+>c73204c4134fbbb074a65e8410643b7c
+AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADI
+FPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY
+>gi|194333943|ref|YP_002015803.1| cytochrome c class I [Prosthecochloris aestuarii DSM 271]gi|194311761|gb|ACF46156.1| cytochrome c class I [Prosthecochloris aestuarii DSM 271]
+------------------------ATPDGEAIFNRSCSVCHSVNPPPkSAPPVIPLANRYHMQFQTKeQGVAAMADFLEKPDVA-----KA-LdPRAVSR
+FGLMPLIP-LTDEERKAVSEWFWDQYNpaK-GGGRGFGG---
+>gi|117926827|ref|YP_867444.1| cytochrome C, class I [Magnetococcus sp. MC-1]gi|117610583|gb|ABK46038.1| cytochrome c, class I [Magnetococcus sp. MC-1]
+----------------TVVGFAGSAHAADDAV--MnKCRACHTweaGKKGKQGPNLFGIVGSAAGSNAdfkyNkssvlPdvgakgvvWDAALIDEYLQDP
+TKFLQR-VLGDAKAKSKM--TFK----LKGaDKADEraaIIEFLSNN---------------
+>gi|32473911|ref|NP_866905.1| hypothetical protein RB5806 [Rhodopirellula baltica SH 1]gi|32444448|emb|CAD74446.1| hypothetical protein-transmembrane prediction [Rhodopirellula baltica SH 1]
+----------------------DGDTVNGKAVFTKHCQTCHQLHGEGslVGPQLDGaisrSVERLlEDvVLPDRNIDQAFRtqslllddgrvlvgliasq
+ddevIRLTTSDGKTqdvRVDNVEarQASQRSLMPANLSE--LMTERELVDLMAYLKSSSGN------------
+>gi|118474682|ref|YP_892589.1| ubiquinol--cytochrome c reductase, cytochrome c1 subunit [Campylobacter fetus subsp. fetus 82-40]gi|118413908|gb|ABK82328.1| ubiquinol--Cytochrome c reductase, cytochrome c1 subunit [Campylobacter fetus subsp. fetus 82-40]gi|342328059|gb|EGU24543.1| ubiquinol--cytochrome c reductase, cytochrome c1 subunit [Campylobacter fetus subsp. venerealis NCTC 10354]
+----------------NSIDLAKGSAKTGEELIAAAgCNACHGIKSANMPAPMDDKtASESFGVAPPDlsdigylYDGKFLAALIKDPVLALKLSHKfSD
+EQPF-PMTP-FMGAGGDLNQEIADLVAYFKSI---------------
+>gi|291280072|ref|YP_003496907.1| cytochrome c family protein [Deferribacter desulfuricans SSM1]gi|290754774|dbj|BAI81151.1| cytochrome c family protein [Deferribacter desulfuricans SSM1]
+-----------------------YPADYGRNTWKKNCRlAC-HDGSKTG-VP-KLAPNS--------KTQQQWENVFA-qnrkyIYEM---------HK-
+---GVD-fS---H-lSEKDWNMIKLFVIQHAYD------------
+>gi|317405587|gb|EFV85888.1| alcohol dehydrogenase cytochrome c subunit [Achromobacter xylosoxidans C54]
+------------------SLLAGRYDSRGAVIYMEHCVICHRADGQGMprifpalagNSAIFA------------QNPQSIIQITLE-----GGGMPAnd
+HDTMAFAMPR-FN---HLSDQDITDVINFIRT----------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 0 * * * * * * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+E 2 * * * 0 * * * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1598 0 0
+
+L 3 * * * * * * * * * 844 * * * * * * * * 1174 * 3
+ 0 * * * * * * 1598 0 0
+
+T 4 2037 * 2128 2229 * * * * * * * * * * * * 1670 * * * 4
+ 0 * * * * * * 2530 0 0
+
+P 5 * * * 1082 * * * 2229 * * * * 1670 * * * * * * * 5
+ 0 * * * * * * 2530 0 0
+
+E 6 2296 * * 719 * * * * * * * * * * * * 2406 * * * 6
+ 0 * * * * * * 2869 0 0
+
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+
+L 8 * * * * * * * 3220 3077 2573 * * * 3101 2057 3008 * 3000 * * 8
+ 0 * * * * * * 3656 0 0
+
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+ 0 * * * * * * 4117 0 0
+
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+
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+
+L 12 3858 * * * * 3763 * 2222 * 1796 * * * * * 3863 4006 3040 3286 * 12
+ 103 * 3863 * * * * 4909 0 0
+
+N 13 1941 * 2766 3601 * 3368 * * * * * 3638 3841 * * * 3982 2959 3812 * 13
+ 94 3982 * 2807 222 * 0 4947 1085 1099
+
+S 14 2931 * * 2804 * 2277 * * 2479 * * 3812 4079 * * 2771 3982 * * * 14
+ 0 * * * * * 0 4947 0 1099
+
+E 15 4316 3439 2893 2514 * 3085 * * 3286 * * 4502 4127 * 3843 3235 4314 * * * 15
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+
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+ 0 * * * * 504 1762 6369 0 1612
+
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+ 47 4957 * 3170 170 * 0 7359 1062 1100
+
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+ 100 3894 * 0 * * 0 7554 1113 1100
+
+I 19 2536 * 5823 4477 * 4281 5639 2709 4497 4119 * * 3591 5585 5724 4185 * 2198 * 4534 19
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+
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+
+L 21 3047 * 4789 * 2806 5904 5637 4821 5593 2204 3978 5788 4941 5594 * 4617 3475 4727 5555 3936 21
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+
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+ 72 * 4362 * * * 0 8339 0 1100
+
+E 23 2722 * 3962 3559 6130 3354 * 6226 3492 6442 5955 3222 2887 6186 6605 3538 3728 5074 * * 23
+ 78 4645 6276 675 1420 716 1354 8937 1182 1436
+
+K 24 2393 * 3223 2980 6271 2528 6647 6484 4071 4148 * 6498 3829 4542 5561 4206 5823 4836 * * 24
+ 15 6589 * 1000 1000 * 0 9184 1032 1199
+
+Q 25 3291 * 2311 3353 5338 6660 6852 5306 4726 3713 * 3480 3654 4022 5138 3731 4652 5090 * 6330 25
+ 80 5860 4763 3138 174 0 * 9459 1173 1199
+
+Y 26 2150 * 5418 4708 5696 3816 5760 3560 5305 2767 5535 6901 4041 4372 6025 5733 5209 3122 6572 5523 26
+ 38 5267 * 1160 856 817 1209 9501 1244 1289
+
+L 27 2076 * 4412 2868 * * 5033 6421 3601 4624 6364 6629 5310 4084 4022 3376 3738 3910 * 6960 27
+ 63 4539 * 1772 500 0 * 9555 1303 1057
+
+E 28 2728 * 3918 3271 * 6803 6382 6962 2927 5587 5825 5751 4788 3443 2529 4035 3909 5345 6914 * 28
+ 28 5708 * 1336 728 * * 9577 1082 0
+
+G 29 3949 * 5762 6833 * 251 * 5667 * 6760 * 6560 6778 * 6850 6593 * * * * 29
+ 13 * 6833 * * * * 9596 0 0
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+K 30 3370 * 4280 2658 5556 7074 * * 2098 5854 * 5430 5415 2775 2775 4617 * 6946 6925 5807 30
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+
+//
+�HHsearch 1.5
+NAME c737dfcd8b440f4a80b15ef9f3c3a806
+FAM
+FILE c737dfcd8b440f4a80b15ef9f3c3a806
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:12:26 2013
+LENG 100 match states, 100 columns in multiple alignment
+FILT 129 out of 1069 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCEECCCEECCCEEECCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCC
+>ss_conf PSIPRED confidence values
+9865999999787822379848999998166588889899889913345451427878998599999999834469989999997888956899815899
+>Consensus
+xxxxxPxvxxxxxxxxxxxxxxtlxCxxxxfxPxxixvxWxxxgxxxxxxxxxxxxxxxxxxysxxsxlxxxxxxxxxxtCxvxhxxxxxpxxxxxxxxx
+>c737dfcd8b440f4a80b15ef9f3c3a806
+MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+--seagS----------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne---DLRSWTAADMAAQN---------------tqrkweaag
+vaeqw----RAYLEGECLEWLRRYLEKGK---------------et--LQ--raE---
+>gi|82407640|pdb|1ZVO|C Chain C, Semi-Extended Solution Structure Of Human Myeloma Immunoglobulin D Determined By Constrained X-Ray Scatteringgi|82407641|pdb|1ZVO|D Chain D, Semi-Extended Solution Structure Of Human Myeloma Immunoglobulin D Determined By Constrained X-Ray Scattering
+------------------------------FR-------WPESPKAQaSSVPTAQPQAEGSLAKATTAPATTRNTgrgGEEKKKEKEKE-----------
+----
+>gi|291165393|gb|ADD81217.1| immunoglobulin light chain [Larimichthys crocea]
+--DTAPTLTVLPPSSEQLQqGKATLMCLANKGFPSDWSLAWKVDSSSSiSwEESRSPVVLEKDGLYSWSSTLRLDADQwrkVDSVTCEATQGSQ-TPRSE
+TL----
+>gi|145559665|gb|ABP73658.1| MHC class I antigen [Sus scrofa]
+----GLKTLR-GYYNQSEAG-SHTYQWMYGCYlgPDGLFLcgysQFGYDGADYvALNEDLRSWTAADMAAQISKRKWEAADEAERMRSYLQGrcvEWLQK
+YLemgkdTLQHAD--
+>gi|148691350|gb|EDL23297.1| histocompatibility 2, M region locus 9, isoform CRA_a [Mus musculus]
+--TDPPEPTI-PFLPM----IIALVlgALLMGSVMTFLI---------------WKRRTRG---------------------------------------
+--
+>gi|16754812|emb|CAC82793.1| immunoglobulin heavy chain constant region [Lepus capensis]
+----GPSVFIFPPKPKDtLmiSLTPEVTCVVVDVSQddPEVQFTWYINNEQVytARPPLR--EQQFNSTIRVVSTLPIVHQdwlRGKEFKCKVHNKALPS
+PIE-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 1281 * * * 1397 * * * * * 2262 * * * * * * * * * 1
+ 0 * * * * * * 3066 0 0
+
+I 2 3826 * * 3904 * * * 1823 2018 2596 * * 4168 * * 4096 * 4217 * * 2
+ 0 * * 2000 415 * * 5676 1081 0
+
+Q 3 3264 * 4739 5879 4755 3735 5771 5773 3345 3357 * 4520 4179 2871 4715 3901 4276 3555 * 5679 3
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+
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+
+T 5 2763 * 6670 3746 6418 3815 4834 6575 3388 4953 * 6414 2035 4750 4709 3385 4825 4321 * * 5
+ 77 4274 * 2716 238 2442 293 9193 1570 1446
+
+P 6 4957 * * * * 6478 * * 6819 4871 * * 350 5244 * 4231 5017 5744 * * 6
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+
+K 7 4689 * 4591 3190 6297 * 5142 5007 2733 4805 5869 5324 6089 4878 4104 2250 2792 4375 * * 7
+ 51 4836 * 1684 538 * 0 9191 1464 1339
+
+I 8 4294 * * 6335 6251 * 6757 3109 6707 3153 4799 6698 4858 6491 * 4588 3858 1075 * * 8
+ 0 * * * * * 0 9176 0 1646
+
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+F 57 3778 4785 5755 3332 5949 3992 5967 4454 3938 3204 * 5975 2568 4300 3584 4930 4059 5231 * 5609 57
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+L 65 3020 6109 * 6379 5283 * * 3432 4098 3593 3854 * 5450 4132 6431 3125 2743 2735 5991 * 65
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+ 0 * * * * * 0 9490 0 1314
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+ 39 6976 5757 1000 1000 1678 541 9490 1000 1314
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+ 11 7004 * 0 * 967 1034 9460 1036 1498
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+T 69 4745 5168 * 7712 4809 6125 6119 3820 5613 1154 5248 * 5476 * 4167 5169 4789 3048 5808 5803 69
+ 19 6260 * 2322 322 * 0 9498 1096 1170
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+E 70 4357 * 4413 3169 * 6939 5231 4774 3974 3747 4850 3748 3872 6090 3419 3776 2750 5514 5596 4883 70
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+F 71 4226 * * 5550 3458 5755 * 2297 6993 2409 4925 * 6806 6594 * 4499 4551 1923 * 6227 71
+ 32 5529 * 1585 585 2551 270 9336 1172 1864
+
+T 72 3400 5948 3933 4754 5981 5626 6891 6749 3739 4802 6598 3967 3004 4748 4653 2800 2928 3815 * * 72
+ 12 6916 * 0 * * 0 9359 1000 1698
+
+P 73 2877 7046 * 3737 4689 5967 4618 * 3191 3464 7047 6440 2513 5051 3949 3128 4604 6964 5322 6970 73
+ 137 3465 * 1860 465 * 0 9359 2338 1698
+
+T 74 4291 * 2766 2651 * 3584 6650 5751 3793 5885 6413 3956 7060 3178 4765 2925 4045 7154 6437 * 74
+ 472 1954 5580 1859 465 616 1525 9359 4524 1698
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+E 75 5268 5231 2750 2189 * 4572 5107 * 4096 4764 * 4075 4674 3290 5035 2895 5642 6478 * 5941 75
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+K 76 3191 * 3847 2688 6675 1817 5136 4911 4428 6191 * 4102 5657 5573 4939 4627 4160 * 7206 6009 76
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+D 77 3143 * 3231 3334 * 2817 5095 6750 3022 4698 6922 4715 * 4804 4434 3560 3681 5403 * 5365 77
+ 22 6048 * 1748 510 2694 242 9234 1166 1961
+
+E 78 6054 * 5925 2506 * 5445 5697 5836 3231 3833 5420 4099 5757 5071 3591 3346 2483 3922 * * 78
+ 68 4903 6340 1042 959 1979 422 9248 1444 1798
+
+Y 79 * 5624 * * 2031 * 4561 3984 6368 4108 4587 * * * 6855 6113 6034 3392 6546 1421 79
+ 25 5870 * 967 1034 3209 165 9286 1121 1980
+
+A 80 5172 * 5672 6987 * 6746 6471 4341 2935 6115 4798 6775 * 4760 4492 2282 1689 4284 * 4786 80
+ 49 4911 * 1453 656 1078 926 9304 1370 1865
+
+C 81 * 287 * 6602 * 5907 * 5748 * 6343 * * * 6649 5903 4837 5793 5354 * 5781 81
+ 0 * * * * 2417 299 9417 0 1519
+
+R 82 5097 5883 7174 2562 5847 5798 4736 4621 4064 6015 4640 5573 6100 3089 3143 5020 3640 2877 * 4826 82
+ 0 * * * * * 0 9401 0 1397
+
+V 83 2589 6187 * 5606 4439 4840 * 4338 * 4740 5158 5798 5883 * 6644 5497 6480 977 * 5867 83
+ 58 5572 5784 4644 59 * 0 9401 1159 1397
+
+N 84 4870 * 4403 3006 5218 7045 5430 5038 2660 5290 * 4657 5946 2986 3820 3237 3587 4923 * 4408 84
+ 0 * * 0 * 2798 224 9311 1000 1713
+
+H 85 6862 * 6132 5698 * 4070 804 6331 6804 4692 * 3127 5210 6944 5654 4759 6543 * 5728 5083 85
+ 85 4396 6714 2604 259 * 0 9239 1514 1594
+
+V 86 3862 * 4567 2284 6320 4458 * 4862 3030 5314 * 4115 3441 5766 3679 3906 4201 4435 5485 6983 86
+ 73 4769 6338 2211 351 1528 614 9113 1663 1751
+
+T 87 2391 * 4212 4499 6834 2378 6840 * 4741 4836 * 4348 4599 * 5303 2144 4257 6680 5321 * 87
+ 22 6037 * 0 * 2216 350 9068 1172 1605
+
+L 88 4917 * 6898 * 4130 3552 * 6477 4649 1347 6396 3938 5595 5148 5435 2934 4892 5204 7015 5424 88
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+S 89 4875 * 4137 3398 * 3836 4616 6291 3443 4794 * 3540 3202 4198 5143 3099 3196 4073 * * 89
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+
+Q 90 3533 * 5044 3046 * 6262 6092 5816 3297 5803 5427 3215 4817 3085 3905 3249 3254 4796 * * 90
+ 0 * * 1000 1000 * 0 8741 1081 1081
+
+P 91 4874 * 3724 3795 4470 * * * 3707 4981 * 5179 1121 6434 * 4011 3835 * * 4894 91
+ 0 * * * * * 0 8734 0 1081
+
+K 92 4425 * * * 5016 * 4942 2526 3635 1576 4153 5897 * 3823 5905 * 4846 3457 * 6112 92
+ 53 4780 * 2322 322 0 * 8587 1213 1081
+
+I 93 5429 * 5167 4092 * 5344 * 3380 3807 3938 6257 6018 6063 4877 2769 3338 2093 3728 * * 93
+ 22 6032 * 2322 322 * * 8576 1000 0
+
+V 94 3381 * * 4192 4663 5191 * 3578 3186 2204 * * * 3909 4177 6061 4047 3054 * 4209 94
+ 27 * 5759 * * * * 8431 0 0
+
+K 95 * * 5471 4735 5256 4542 3895 5342 3566 * 4503 3641 4501 4028 3574 2479 2965 5650 * 4225 95
+ 0 * * * * * 0 8191 0 1081
+
+W 96 4676 * * * 2743 * 4170 5207 * 2962 * * 5155 * 4943 5207 * 3498 1332 5199 96
+ 0 * * 1000 1000 0 * 7388 1081 1081
+
+D 97 3935 * 2971 2448 * 3203 * * 2639 * * 3277 * * 4795 4046 3657 3724 * * 97
+ 0 * * * * * * 6949 0 0
+
+R 98 * * 3587 4579 * 4295 4721 * 4058 * * * 945 * 3353 * 4178 4226 * * 98
+ 0 * * * * * * 6220 0 0
+
+D 99 * * 3652 2520 * * 3515 * * * * * 1830 3785 * 2197 3529 * * * 99
+ 0 * * * * * * 4690 0 0
+
+M 100 * * * * * * * * * 844 1175 * * * * * * * * * 100
+ 0 * * 0 * * * 2653 0 0
+
+//
+�HHsearch 1.5
+NAME cb13cb2555c5bacde1dc168618e48f3f
+FAM
+FILE cb13cb2555c5bacde1dc168618e48f3f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:33:53 2013
+LENG 183 match states, 183 columns in multiple alignment
+FILT 143 out of 1887 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCHH
+HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
+>ss_conf PSIPRED confidence values
+9137999999852899833999999999999999999965887544785434789999677789999757717678999998603999999998997311
+68899999999986244899789999882155423899999999887654269708999668896999999999998675179
+>Consensus
+xxxxxxxxxxxxxxxxxxxxixvxGxxxxGKstlixxlxxxxxxxxxxtxxxxxxxxxxxxxxxxxxDxxgxxxxxxxxxxxxxxxdxxixvxdxxxxxs
+xxxxxxxxxxxxxxxxxxxxxxivvxnKxDlxxxxxxxxxxxxxxxxxxxxxxxxxxxxSaxxxxxixxxxxxixxxxxxxxx
+>cb13cb2555c5bacde1dc168618e48f3f
+MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR
+MSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL
+>gi|300121709|emb|CBK22284.2| unnamed protein product [Blastocystis hominis]
+--------------KDNNIRIIVVGDAAVGKTSIISTFVSDRFAENVDPVLcevVIPGECTTNHCSLTIVDSSSIEEDHDITCEQIRLADVVMIVYSLDK
+PHSLESVTTKWIPLVIDIGGPQKPIVVVGNKIDLEKnpssMNSNTHLREHSESILSQYPNVDcCMECSAKSRQNLTQVFYAAQRTV-----
+>gi|14595136|dbj|BAB61872.1| Picchu-236-X [synthetic construct]
+--------------DMAGNfdseersswywgrlsrqeavallqgqrhGVFLVRDSSTSPGDYVLSVSENSRVsHYIINSSgPRPPVPPSPaqPppgvspS
+RLRI----GDQEFDSLPALL-----EFYKIHYLDTTTLIEPVSR---------SRQGSGVILRQEEAEY-------------------------------
+---------------------
+>gi|288553110|ref|YP_003425045.1| GTPase RsgA [Bacillus pseudofirmus OF4]gi|288544270|gb|ADC48153.1| ribosome-associated GTPase [Bacillus pseudofirmus OF4]
+------------------------------------------------------------------------DRKNELVRPPISNIDQALLVFSAKEPDF
+---SPLLLDRFLVHIEANNIKPVIIISKVDLLLPNELAEIKEYQKQY--EAIGYTVILTTNQNQSSnqtneMVEILSCIKDQV-----
+>gi|326674986|ref|XP_001337060.4| PREDICTED: GTPase IMAP family member 8-like [Danio rerio]
+-----------------sEFSLVLLGYGEAGKSSAGNTILGRPafgs-----gRTYQCVQRHGEVGGQKVSIIDTPGWwkhlpiqqtpelnkEQITQSAS
+LSTSGPPAFILVTRAD--CSFKEQERKALEDHLNLFGSSVwdHSLVLFTFGDLIGGRAIEQHIEWEGealrwlVDRCGNRYHVFNNKA---kgeSQQVRG
+LLEKIQEMTVANK-
+>gi|169621003|ref|XP_001803912.1| hypothetical protein SNOG_13705 [Phaeosphaeria nodorum SN15]gi|160704153|gb|EAT78729.2| hypothetical protein SNOG_13705 [Phaeosphaeria nodorum SN15]
+--------------------------------------------------------------------------MSISLIHQVtQTSHGAVCILDG----
+-VAGVEAQTEKVWLQSGQYNIPRIIFVNKLDRVGA-------------------------------------------------
+>gi|118366321|ref|XP_001016379.1| hypothetical protein TTHERM_00128980 [Tetrahymena thermophila]gi|89298146|gb|EAR96134.1| hypothetical protein TTHERM_00128980 [Tetrahymena thermophila SB210]
+--------------KKKIINVLVDGSPKSGKSQLISKLSEYCLHEGYDYMErylknCSEVMIQNEQVTVIFYENSNHQ-YLKEESEFNIQFHIYLLLFDV
+NNQDSFEISIKQYNQYSSK--LKSSLKFLIASKCDLSNmsiviqkninnlqylsQITTEDIEQFLvessriylndqQEQFAQQNGFSIFAVSSATKRNVQ
+TLKFKLAQAAYNLGL
+>gi|27383230|ref|NP_774759.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110]gi|27356404|dbj|BAC53384.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110]
+-------------------VVALIGPSGSGKSTLLRCVNL----LVTPDGGS----VRVGDTRFQFGEGAKlpdvktLARFRATTGMVFQH-FNLFPHMT
+TLQNVmegPV----------------------------------------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * 1946 717 * * * * 2921 * * * * 1
+ 0 * * * * * * 4567 0 0
+
+G 2 * * 3515 3407 * 1165 3386 * 3526 * * 3434 3363 * * * * * * * 2
+ 0 * * * * * * 5462 0 0
+
+N 3 3639 * * * 3633 3839 2728 * 3685 * * 2134 * 3387 3671 3778 3927 * * * 3
+ 0 * * * * * * 5919 0 0
+
+I 4 3778 3671 * 3839 * * * 2104 * 2461 * * * 2690 3633 3685 * 4290 * * 4
+ 0 * * * * * * 5919 0 0
+
+F 5 3212 * * * 1452 * 3708 3020 * 2576 3291 * * * * 4136 * * * * 5
+ 0 * * * * * * 6445 0 0
+
+S 6 * * * 4164 * * * * 1917 * * * * 4206 2549 2015 2721 4179 * * 6
+ 0 * * * * * * 6941 0 0
+
+S 7 * * 4348 * * 3559 * * 2010 3613 * 2448 * 2988 3351 4575 * * 4662 4402 7
+ 0 * * * * * * 7268 0 0
+
+M 8 4435 * 4551 * 2607 * * 2536 4399 1550 4659 * * * * 3924 * * 3645 * 8
+ 0 * * * * * * 7388 0 0
+
+F 9 * 4603 * * 3202 * * 2715 * 2112 4750 4698 4746 4710 3730 4738 * 2587 * 4787 9
+ 0 * * * * * * 7761 0 0
+
+D 10 * * 3014 3948 4845 * * * 3502 * * 2244 * 3306 2086 3228 4882 * * * 10
+ 105 4775 4882 1000 1000 * * 8086 1046 0
+
+K 11 4873 * * 4651 * 3408 * * 2443 * * 4927 * 3901 3857 1898 2491 * * 4924 11
+ 0 * * * * * 0 8057 0 1059
+
+L 12 4821 * * * 4882 3577 4651 3841 2547 1451 * * 4830 4918 4914 * * 4896 4873 5001 12
+ 0 * * * * 0 * 8057 0 1059
+
+W 13 3879 * * 4971 1599 * 5145 3400 3085 4021 * 5068 5009 5018 5024 3499 5088 * 5203 * 13
+ 0 * * * * * * 8271 0 0
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+ 45 5471 6935 1000 1000 * 0 11543 1272 1405
+
+E 143 3826 6118 4720 3781 3248 6503 6043 3525 2790 3708 5878 4712 * 4517 3733 4290 5239 4655 6213 4054 143
+ 25 5848 * 3514 132 * 0 11527 1153 1608
+
+L 144 4144 4793 5236 3500 4015 6969 5677 3085 5207 2315 3998 6895 * 5615 6032 5140 4878 2965 6928 4269 144
+ 93 4203 6969 3652 120 1093 913 11527 1855 1608
+
+N 145 3102 6957 4599 4238 6866 3004 6000 5361 2715 4290 * 3781 5304 4546 3562 3504 4142 4865 * * 145
+ 434 5018 2126 2119 377 * 0 11534 1501 1396
+
+L 146 4683 6454 4290 2635 3806 5051 6567 4247 3789 2538 5655 4837 5129 5104 4417 3440 4843 5401 * 5778 146
+ 49 5491 6500 2508 279 2254 340 10589 1173 5263
+
+V 147 4303 4875 3383 3075 5692 5004 6894 4833 3153 3544 4575 4051 6543 3642 5037 4017 4315 4388 * 5313 147
+ 65 * 4509 * * * 0 11258 0 4625
+
+E 148 4929 5497 4426 3551 3455 3237 6671 4136 4136 3630 4130 4255 6310 4230 3979 3886 4907 4560 6508 5752 148
+ 81 6634 4498 2807 222 * 0 11163 1000 5200
+
+L 149 2262 6456 5446 4085 3774 4947 6498 2934 5018 3828 5335 5226 5435 4400 * 3787 4171 4086 * 4617 149
+ 150 6188 3553 2000 415 1053 949 11131 1000 5601
+
+K 150 4631 5043 3335 3895 4995 6378 4736 5095 2559 5844 5560 3704 5658 4010 3650 3062 4614 5460 5454 * 150
+ 76 4632 6515 3844 104 1475 643 10645 1542 4582
+
+D 151 4127 5004 4216 3099 4166 5087 4622 4597 3751 4318 6980 3641 3649 3664 4386 4445 4244 5777 6738 5117 151
+ 109 4983 4593 1223 807 1984 420 11355 1357 3544
+
+R 152 5248 6815 5252 3461 6893 4911 5776 4068 2988 3024 5880 3548 4043 4625 3241 3720 5902 5079 5161 5665 152
+ 38 5797 6993 2577 265 3004 192 11299 1108 3486
+
+S 153 5050 6648 4016 3702 5826 2075 * 5711 3514 5938 6878 2954 3800 5904 3462 4475 5295 4820 6572 6633 153
+ 30 5615 * 2773 228 * 0 11358 1149 3331
+
+W 154 3191 3761 5814 6760 3438 5554 6599 2786 5785 2996 4660 6664 5082 * 5631 5789 5275 2883 4360 4321 154
+ 10 7133 * 1000 1000 383 2102 11358 1000 3331
+
+S 155 3462 7041 3487 3027 6933 4156 5421 5353 3121 6723 6828 4935 2573 5735 4844 3767 4481 4802 * 4792 155
+ 264 2579 * 999 1001 952 1050 11532 3955 1463
+
+I 156 4541 4762 6928 6574 2958 * 5792 2320 5970 2738 6580 6756 4334 * * 5326 * 2553 6766 3122 156
+ 12 6928 * 2585 263 1229 803 11519 1030 1134
+
+V 157 4575 * * 6615 2781 * 4486 1989 5709 3141 4934 6835 * 5693 6779 5186 5933 2567 * 3461 157
+ 21 6099 * 535 1690 0 * 11549 1119 1000
+
+A 158 4184 6593 4815 2207 4133 5699 4961 6040 3493 3503 6196 5406 3080 3719 5304 4930 4908 5800 * 4597 158
+ 21 6124 * 1585 585 * * 11560 1183 0
+
+S 159 4170 2671 * * 7043 5351 6797 3151 * 3735 4589 5959 6717 5860 6542 5101 2294 2231 6860 6833 159
+ 21 6141 * 0 * * * 11560 1085 0
+
+S 160 6115 5329 4450 6797 7460 6107 * 4809 6948 6673 * 3669 7013 6863 6542 686 3623 5397 * * 160
+ 23 5973 * 2310 325 * * 11560 1167 0
+
+A 161 1353 4396 7188 5285 * 4195 4646 4983 6906 5758 6508 5483 5790 7040 6837 2582 3937 3886 * 6964 161
+ 32 5496 * 3092 180 * * 11564 1332 0
+
+I 162 4093 * 4776 4703 5344 5437 4499 7168 1998 3124 6043 4799 * 3851 3213 4885 3734 4971 * 4899 162
+ 22 7164 6992 3322 152 * 0 11559 1011 1000
+
+K 163 4951 * 2948 3084 6798 4431 4172 * 3558 4928 5804 3465 7043 4932 4529 3520 2513 6590 * 5221 163
+ 41 6646 5819 2322 322 885 1125 11548 1001 1106
+
+G 164 5046 5710 4596 5114 6633 1550 5922 5762 3550 5315 5732 2540 4125 6009 4324 4954 5752 6792 * 6631 164
+ 39 5240 * 2050 399 0 * 11500 1394 1326
+
+E 165 4335 * 4162 2740 5163 4774 5194 3643 3602 4275 5265 3903 6998 5049 4509 3634 5403 3742 5873 3872 165
+ 25 5853 * 2224 347 * * 11535 1178 0
+
+G 166 5333 * 4017 7057 * 1369 4870 5964 6063 6091 * 2097 6589 4176 6615 3505 4868 * * 7174 166
+ 33 5460 * 1805 486 * * 11535 1364 0
+
+I 167 6799 4335 6613 * 4852 * 5843 1691 5515 2751 3744 * 5722 6691 5924 5364 5933 2066 * * 167
+ 0 * * * * * * 11533 0 0
+
+T 168 4037 * 2726 2835 5708 6972 4858 6789 3274 4509 5785 3356 4722 3816 4233 4012 4844 5163 6997 5684 168
+ 13 6854 * 2000 415 * * 11520 1000 0
+
+E 169 5079 6853 4472 1602 * 5421 6703 5987 3518 3477 6664 3384 * 3603 3955 4795 4470 5166 * * 169
+ 0 * * * * * * 11434 0 0
+
+G 170 3113 5698 * 6730 5760 5167 7049 2417 * 1712 5056 * 5618 7029 5573 5628 3822 2969 6424 * 170
+ 0 * * * * * * 11346 0 0
+
+L 171 5460 6762 6053 5021 1908 6946 6654 3171 3842 2476 4095 5807 5758 * 5123 5924 * 3844 4588 5264 171
+ 0 * * * * * * 11346 0 0
+
+D 172 3611 * 2712 2452 6791 6705 6797 5223 3540 6577 5718 3985 6135 3796 3752 3581 4149 5656 * 5074 172
+ 0 * * * * * * 11307 0 0
+
+W 173 3266 7386 4225 3669 4274 6615 6596 5827 3340 4052 4755 5505 7080 3757 4290 3707 4634 3907 4391 3534 173
+ 0 * * * * * * 10665 0 0
+
+L 174 3567 5882 * * 4942 * * 1324 * 1553 4787 * * * * 5619 6736 4058 * * 174
+ 0 * * * * * * 10665 0 0
+
+I 175 3447 4605 5809 4697 5609 4213 6836 3063 3553 2674 5759 6960 * 3920 4199 5021 4742 2842 * 6439 175
+ 0 * * * * * * 10588 0 0
+
+D 176 3782 * 3781 2928 * 5856 4691 * 2826 6476 * 3591 * 3038 3128 3330 3760 * * 5479 176
+ 0 * * * * * * 10577 0 0
+
+V 177 3393 * 6883 4506 6572 6293 4806 3944 2394 2621 5405 6355 6590 3524 4941 4254 3980 4239 * 4599 177
+ 0 * * * * * * 10176 0 0
+
+I 178 3218 5484 * 5341 3520 * 6423 2222 * 2090 6323 * * 6343 5977 6434 5321 2349 * 5376 178
+ 15 6613 * 0 * * * 10137 1000 0
+
+K 179 3665 * 4182 3378 5250 * 5985 * 3022 3418 6104 * 2964 6127 3864 3820 3902 3953 6375 3815 179
+ 0 * * * * * * 9833 0 0
+
+E 180 4452 * 3507 2425 * 4227 5076 4295 2876 3875 * 4109 6034 3998 3917 3678 5977 5139 * 5844 180
+ 0 * * * * * * 9710 0 0
+
+E 181 4671 * 5597 4837 4973 5501 4800 4866 3445 3690 * 3240 3581 4765 2338 3013 4592 * 5478 * 181
+ 0 * * * * * * 9198 0 0
+
+Q 182 4442 * 5448 3174 5278 5553 4055 * 3224 * * 3765 3328 2380 2950 * 3516 5385 * * 182
+ 0 * * * * * * 8957 0 0
+
+L 183 * * * * * 4341 * 3546 * 853 4297 * * * 2773 * * 4329 * 3951 183
+ 0 * * 0 * * * 7139 0 0
+
+//
+�HHsearch 1.5
+NAME cbc92a8a85651bd2fb2a8622778ceaf5
+FAM
+FILE cbc92a8a85651bd2fb2a8622778ceaf5
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:36:36 2013
+LENG 208 match states, 208 columns in multiple alignment
+FILT 128 out of 1149 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
+HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
+CCCCCCCC
+>ss_conf PSIPRED confidence values
+9999997655688871599999798988868999999999999995667899858999997794469865777678999999998754379984229999
+9999999862257789971999994799876503659999999998799899999488259999999982789981899599999999999999997166
+99999988
+>Consensus
+xxxxxpxxxxxcxxxxDivfllDxSxSmxxxxxxxxxxxxxxxxxxxxxxxxxxrvxvvxfsxxxxxxxxlxxxxxxxxxxxxixxlxxxggxxtxxxxa
+lxxxxxxxxxxxxrxxxxxxiiliTDGxxxxxxxxxxxxxxxxlxxxgixvxavgxgxxxxxxxLxxiaxxxxxxxxxxxxxxxxLxxxxxxixxxiCxx
+xxxxxxxx
+>cbc92a8a85651bd2fb2a8622778ceaf5
+DISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMEQLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEV
+LKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDL
+APEAPPPT
+>gi|260837234|ref|XP_002613610.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]gi|229298996|gb|EEN69619.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]
+------------------LYPYGSySGGYPPSNMEKTMG-PGNYRVPLVAGGETITIGSIKKTEETSPseslsaekQAVVAAQDTRECTMSSITiySEER
+LRGT-KKTYSGNGWLPRDP---SWVVDSAGPAWVDSNGVTWED----V-----------VTVDNVQSGDQ--RQVFGGFQ--GKARywKLVITQTYTGWQ
+PYVRE----------------
+>gi|67677889|gb|AAH97100.1| Cfb protein [Danio rerio]
+------------GGKLDIYIAVDASDSIDPKDFDKAKKIIKTLIEKISYYEVSPNYEILMFATDVDQIVKMRDFKTNekArnivKVFEDLDNFNYDKkgd
+RTGTNIAKLYLKILDSMSLEQVQNkedflQTQHVIIVFTDGQAnmggnPKPKVDLIKNLViknNASRENKLDLYVFGVGKDVKKEDMNGLVSEKKdERHF
+FKLPDLDEVQNTFDLMLDdstvvGLCGMQQN-----
+>gi|308473880|ref|XP_003099163.1| CRE-CLEC-65 protein [Caenorhabditis remanei]gi|308267636|gb|EFP11589.1| CRE-CLEC-65 protein [Caenorhabditis remanei]
+------VSDRRCGSdvtrlWLDVVIIVDNCSIMNLNLVYETISGLFNKN--LQIGtgytdPRSTRVGFITYNYNATDVADFYKLQSWADLDSQIQRLKMT
+PlarTTLSKMDTALYAA-INMINstAGFRDNYKKMVIVFTSVHgSYQ--KNPPKDVSKILKARGIPVVTVNTGSSSDTqSYLKNIA---SDNMAYAMADG
+NATQEILKAMTDT------------
+>gi|254410148|ref|ZP_05023928.1| Vault protein inter-alpha-trypsin [Microcoleus chthonoplastes PCC 7420]gi|196183184|gb|EDX78168.1| Vault protein inter-alpha-trypsin [Microcoleus chthonoplastes PCC 7420]
+---IPAlDYRPDQIFPKDVVFLMDTSGSQQGAPLHKCQELMRRFIQGLN---PDDTFTILDFSNAVRHLSQTPLANTPENRELAINYINQLHaSGATEML
+SGIRAA----INVPAPEGRLRSVVLLSDGYIGNEN-RILAEVQQELKPGNR-LYSFGAGSSVNRFLLNRIAEIGR-GICRIIRHDEPTEKVVENFFRSI-
+----------
+>gi|224012469|ref|XP_002294887.1| predicted protein [Thalassiosira pseudonana CCMP1335]gi|220969326|gb|EED87667.1| predicted protein [Thalassiosira pseudonana CCMP1335]
+------------------------------NNFRDMVEFAKSMITSLAALQSNQSYSVVQFATNATLVSLLTSS---IETLEVMDKMAYSGGLT-NHAAA
+I-SACQETLAQSPTGDRKNLLLLITDGDPSLpelAAKEAASQAAAEAKEAGTLIISVMISSLFKPATLDYMREISSHGAVFNVSGFQDLASLQQSLLEEV
+-----------
+>gi|254776136|ref|ZP_05217652.1| chelatase [Mycobacterium avium subsp. avium ATCC 25291]
+-----------------VIFVVDASGSMAaRDRdgggqrcHAVAAARRLSAPRQG----RRDHVPATAGAAA-VAAHLLGAHRRAAAGPLRHRRQD-AAG
+RR-AAGR----ARADRPGEGPRpGAPRP-----RGGAHrrpghrrpgsvGPQPDRRGPAGRRGRGRGGGGLRNV--------------------------
+----------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+D 1 * * 0 * * * * * * * * * * * * * * * * * 1
+ 0 * * * * * * 2329 0 0
+
+I 2 * * 3141 2992 * * * 1942 * 3016 1983 * * * * * * 3011 * * 2
+ 190 3016 * 3807 107 * * 4427 1000 0
+
+S 3 * * 3820 * * * * * * * 3795 * 756 * 3775 3918 * 3983 * 3999 3
+ 0 * * * * * * 5927 0 0
+
+E 4 * * 3124 1440 * * * * * * * * 1625 * 3862 4027 * 3999 * * 4
+ 0 * * * * * * 6131 0 0
+
+P 5 * * * 4243 4125 * * * * 3468 * * 948 3212 4117 4075 4150 * * * 5
+ 0 * * * * * * 6412 0 0
+
+P 6 * * 4421 * * * 4423 * 4423 4387 * * 404 * * 4143 * * * * 6
+ 72 4352 * 0 * * * 6816 1024 0
+
+L 7 3816 2273 * * * * * 3515 4582 3019 * * * * 3649 4636 2967 2491 4513 * 7
+ 0 * * * * * * 7026 0 0
+
+H 8 4636 4476 4652 * 2785 * 2639 4608 4897 4808 * 3805 * 4912 * 3003 4947 3059 * 3696 8
+ 228 2775 * 3347 149 * * 7255 1582 0
+
+D 9 3980 4277 2474 * * 4978 5006 4998 3079 * * 4006 5029 5206 5468 2243 5070 3656 * 5075 9
+ 39 * 5232 * * * * 7597 0 0
+
+F 10 3287 5160 4352 3518 4177 * * 5127 * 2327 * 5133 2842 3505 3961 4208 * 4319 * 5286 10
+ 38 * 5257 * * * 0 7733 0 1000
+
+Y 11 3719 * 5397 * 3793 4318 * 3881 4387 2850 * 3870 3326 3887 3392 4348 4385 * * 3384 11
+ 0 * * * * 1042 959 8066 0 1142
+
+C 12 5603 711 * 5786 * 5624 * * 4617 * * 4617 4543 3675 4440 4077 * * * 5496 12
+ 26 5786 * 0 * 0 * 8376 1000 1000
+
+S 13 5140 * 3866 3478 4788 5717 6113 6233 3372 6116 * 4479 4196 3916 4064 2180 3229 4366 * 5783 13
+ 275 2525 * 806 1224 0 * 8669 2474 1000
+
+R 14 3417 6360 6623 3293 6409 3363 * 5149 3237 4828 6206 3539 4051 3920 3885 3638 5405 3411 * 6377 14
+ 91 4360 6346 1702 530 * * 8978 1464 0
+
+L 15 3691 * 4573 5098 5088 4096 6765 6722 3136 6762 6295 4525 2073 4548 4390 3698 5575 4656 4447 4208 15
+ 15 6604 * 2000 415 0 * 9224 1000 1005
+
+L 16 2609 * * * 5641 6475 * 3259 5115 2364 3456 6849 5627 4248 4655 5910 5121 2432 * 4867 16
+ 0 * * * * * * 9334 0 0
+
+D 17 5019 * 605 3815 * * 4589 * 6691 * * 3655 5961 6876 5186 6017 6365 5045 * * 17
+ 15 6564 * 1000 1000 * * 9419 1019 0
+
+L 18 6672 * * 7015 4981 * 6801 1696 * 2190 4123 * * * * 7417 4643 1800 7081 5934 18
+ 0 * * * * * * 9575 0 0
+
+V 19 2977 4552 * * 5244 4863 * 3002 * 3413 4683 * * 6661 * 4980 5423 1361 * 4109 19
+ 0 * * * * * * 9667 0 0
+
+F 20 6677 * * * 1239 * * 2290 * 2127 7058 * * * * * 6696 3780 * 4536 20
+ 0 * * * * * * 9667 0 0
+
+L 21 3198 5245 * * 5884 6065 * 2913 * 1368 5375 6710 5978 * * * * 1927 * * 21
+ 8 * 7447 * * * * 9667 0 0
+
+L 22 7081 4340 * * 4463 * * 1859 * 1526 4537 6853 * * * * * 2403 * 4868 22
+ 0 * * * * * 0 9665 0 1000
+
+D 23 * * 224 4224 * 5976 5212 * * * * 6533 6549 * * 5279 * * * * 23
+ 16 * 6533 * * * 0 9665 0 1000
+
+G 24 3045 6805 4904 4691 6896 3087 * 4940 5997 6010 5189 3589 * 5928 4408 2452 3035 2952 * * 24
+ 23 5953 * 0 * 766 1280 9643 1143 1181
+
+S 25 6761 6696 * * * * 6549 * * * * * * * * 143 4204 6533 * * 25
+ 11 * 7027 * * * 0 9665 0 1000
+
+S 26 4111 * 3116 3566 * 1421 6756 6316 * 5991 6663 4477 * 5466 4273 2728 4773 * * 6096 26
+ 35 * 5363 * * * 0 9660 0 1127
+
+R 27 4616 * 4630 * 5905 4233 6830 6600 5191 6732 5894 5319 6676 * 4361 624 4791 6979 * * 27
+ 25 * 5888 * * 1272 771 9606 0 1604
+
+L 28 6645 * 5352 * * 6667 * 2411 6758 3784 1292 * * 5744 * 6008 6454 2265 * 5383 28
+ 60 4912 7065 3145 173 1538 609 9609 1572 1617
+
+S 29 3696 6801 3770 4997 6994 2332 5591 6652 4047 6674 * 4463 4823 4897 3715 2233 3764 5822 * 7080 29
+ 238 4052 3447 922 1082 2169 363 9607 1926 1500
+
+E 30 3308 * 3761 3204 6900 2590 5010 5889 5388 4712 5821 3868 3196 3494 4636 3948 5841 6873 6852 6846 30
+ 87 4464 6237 3157 172 410 2016 9536 1706 2795
+
+A 31 3281 * 3560 2968 6708 3711 5363 5984 4343 4774 5890 4133 5958 4426 4646 2685 4079 4215 * 5173 31
+ 43 5893 6303 3272 158 875 1137 9656 1153 1601
+
+E 32 4108 * 3001 3152 4724 3463 5158 6147 3533 5259 6015 2918 4971 4505 3979 4176 4356 6682 * 5608 32
+ 91 4030 * 2375 309 1690 535 9587 1938 1533
+
+F 33 7199 * * * 1638 5399 6462 3830 7312 2466 4187 * 6001 5280 4888 5977 5852 4160 3199 4289 33
+ 25 5847 * 2098 384 1406 684 9627 1306 1323
+
+E 34 4314 * 3310 2298 6950 4139 7047 5366 3774 4532 7009 4709 4650 3206 3289 4584 4314 5692 * 5334 34
+ 11 7101 * 0 * * 0 9649 1000 1144
+
+V 35 3591 * 4951 3632 7049 5815 4011 3816 2557 3126 4476 7400 6462 4041 3878 4641 4722 4314 * 4575 35
+ 54 5005 7400 2388 306 0 * 9649 1686 1144
+
+L 36 2523 6919 * 4318 6136 5700 5629 3157 6984 2908 3052 * * 4321 * 4236 4038 2620 * 6210 36
+ 39 6330 6158 0 * * 0 9665 1159 1000
+
+K 37 4631 * 5131 6744 * * * 3470 1654 3430 4979 4161 * 4117 2807 4617 5757 4108 * 6000 37
+ 11 * 7056 * * 612 1532 9662 0 1245
+
+A 38 3269 * 2570 3509 6011 4201 6971 5340 3402 6642 6344 3967 5357 3963 4266 3784 2997 * * 5762 38
+ 23 * 5972 * * 1038 963 9661 0 1115
+
+F 39 2720 5803 6498 5042 1423 4793 * 4842 5478 3667 6769 5676 6846 7082 6434 4414 5734 4028 5773 4571 39
+ 38 * 5258 * * 550 1658 9579 0 1281
+
+V 40 2394 5437 * * 5897 7019 * 2233 * 2315 4417 * 5879 * 6333 * 3668 2368 * * 40
+ 0 * * * * 799 1234 9589 0 1511
+
+V 41 3140 * 5346 3457 5203 4864 6943 6000 2466 3361 5413 4635 5465 4546 3329 3669 5311 3737 * * 41
+ 0 * * * * * 0 9656 0 1131
+
+D 42 3364 * 2984 3900 6868 5407 4912 * 3252 4872 5589 2693 * 3044 4054 3334 5278 7019 * 6003 42
+ 0 * * 2577 265 1047 954 9656 1131 1131
+
+M 43 3456 * * * 2706 6990 * 2383 6688 1825 4136 * * * * 4860 5878 2838 * 5974 43
+ 0 * * * * * 0 9658 0 1000
+
+M 44 4171 * * * 4375 4341 6550 2304 7208 2252 4240 5752 6478 6631 5974 4713 4518 2233 * 6172 44
+ 50 5355 6688 0 * * 0 9658 1269 1000
+
+E 45 4497 6878 2567 2834 * 4758 6961 4944 3350 5129 * 3620 5748 3723 3266 3711 4010 5964 * * 45
+ 55 5639 5822 0 * * 0 9645 1197 1163
+
+Q 46 4503 5925 4400 4121 6472 4781 4234 4526 3629 4159 5497 4303 4187 2938 4285 2768 3994 * * 4855 46
+ 55 * 4744 * * 1096 910 9577 0 1519
+
+L 47 6662 6607 * 6930 2124 5587 * 3323 5018 1525 4884 5926 * * * 5034 5008 3528 * 4481 47
+ 56 6941 5054 0 * * 0 9589 1000 1873
+
+R 48 3415 * 3427 4018 * 3613 7013 * 3627 5304 5969 3297 4052 4221 4115 3460 3448 4145 * 5184 48
+ 482 3986 2178 162 3239 2470 287 9589 1929 2362
+
+I 49 5038 * 5008 5528 4061 5533 6101 1983 5970 2498 4469 5540 4747 5641 * 3916 4400 3340 * 4695 49
+ 50 5452 6521 1840 473 3394 144 9185 1132 5149
+
+S 50 3910 * 4033 5249 6190 2110 6397 5443 5073 * * 4315 5202 3993 3540 2556 3696 4987 * 5000 50
+ 432 2318 4099 1610 572 2192 356 9206 3430 4929
+
+Q 51 4444 * 3779 3902 5604 3368 6917 * 3464 4981 * 3308 2646 3844 4296 3659 4339 4147 * * 51
+ 76 4276 * 1637 560 578 1599 9383 1553 4732
+
+K 52 4078 * 2700 3870 6997 3908 4738 6871 3443 4996 * 3172 4817 3781 4777 3750 3864 4874 * 4569 52
+ 41 6883 5655 1188 833 661 1444 9642 1153 2360
+
+W 53 4057 * 2907 4659 5320 2971 4750 6716 4615 4903 5657 3166 7085 3959 3422 4310 3518 4929 7090 5679 53
+ 39 5239 * 1533 612 682 1409 9687 1307 1742
+
+V 54 3254 * 2894 5174 5927 5081 6769 3625 * 5651 5391 6956 6893 5602 5389 3496 2163 2538 6970 * 54
+ 0 * * * * 855 1161 9694 0 1190
+
+R 55 6630 * 4876 5460 5911 6006 3554 * 3274 6765 7032 4006 * 3125 1285 4754 4697 * * 4929 55
+ 12 6970 * 1585 585 * 0 9724 1000 1000
+
+V 56 3894 * * * 3134 6185 * 2295 * 3322 4975 * * * * 5923 7471 1383 * 3965 56
+ 47 5319 7223 1757 506 962 1039 9715 1282 1145
+
+A 57 1853 4960 * 6779 5836 1475 * 6078 * 6661 5952 4593 6495 7007 * 2617 4981 * * 6823 57
+ 0 * * 2000 415 1146 868 9718 1000 1168
+
+V 58 3337 * * * 3933 6715 * 2231 * 2027 4126 6884 * * * 5969 7114 1895 * 6665 58
+ 24 5946 * 1924 441 0 * 9728 1137 1021
+
+V 59 3418 5931 6998 * 4915 5102 * 2423 * 2548 5059 * * 5198 7040 4743 4573 1818 6659 5332 59
+ 0 * * * * * * 9736 0 0
+
+E 60 3571 * 7032 4595 5312 4757 4671 4172 3474 3808 7105 4927 6989 3163 4638 3367 2282 4773 * 6714 60
+ 0 * * * * * * 9736 0 0
+
+Y 61 6141 * 6663 6869 1266 5147 * 6030 5976 5251 6744 6811 * * * * * 5041 5780 1326 61
+ 27 * 5748 * * * * 9736 0 0
+
+H 62 3097 * 3692 * * 2232 5496 6654 4924 6853 * 3677 * * 5691 1542 3840 * 6867 * 62
+ 14 6688 * 0 * * 0 9711 1020 1177
+
+D 63 4421 6060 2415 3604 5344 3150 4633 * * * * 3694 6853 5942 6024 2041 3251 * 6901 5867 63
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+I 193 * * * * 2786 * 5364 1699 5716 2149 3340 * * * * * 6222 2690 * 6500 193
+ 0 * * * * * * 9237 0 0
+
+V 194 3591 6827 5381 4141 6592 4027 6662 3171 5515 2285 6564 6268 6355 4479 5617 3972 3553 2770 * 6452 194
+ 27 5774 * 0 * * * 9216 1095 0
+
+S 195 6369 6411 2874 3579 * 4919 5562 * 2831 * * 2918 6296 3779 2984 3367 3651 5212 * 6205 195
+ 18 6313 * 2322 322 * * 9215 1000 0
+
+Y 196 2557 * 4304 3305 5269 * 6121 * 3482 3840 * 5439 * 3760 4375 3445 3880 3862 5540 3581 196
+ 0 * * * * * * 9048 0 0
+
+L 197 5271 * * 6081 5169 * * 1293 * 1765 5967 6478 5521 4351 * 4843 * 3376 * * 197
+ 26 5816 * 0 * * * 8982 1019 0
+
+C 198 4381 398 * * * 6163 * * 5868 5896 * * * * * 5699 4918 3429 * * 198
+ 0 * * * * * * 8584 0 0
+
+D 199 5572 * 3209 3354 * 2861 4924 * 2959 * * 4738 3427 3251 4865 3627 4272 4244 * 5754 199
+ 0 * * * * * * 8463 0 0
+
+L 200 3421 * 3124 4113 4829 4014 * 5644 4758 3841 5702 4173 4624 4264 5562 2883 3948 3040 * * 200
+ 83 5396 4973 0 * * * 8376 1000 0
+
+A 201 1518 4393 * * * 5199 * 3659 * 3664 5303 5544 4528 5241 5278 4318 3829 3002 * 5040 201
+ 0 * * * * 0 * 7682 0 1058
+
+P 202 * * 3959 4811 * 5093 * * 2411 * * * 1389 4859 3960 4759 2976 * 4712 * 202
+ 0 * * * * * * 7207 0 0
+
+E 203 3073 2594 4759 1860 * 3772 * * 3221 * * 4765 4850 4798 3761 * * 4594 * * 203
+ 0 * * * * * * 6985 0 0
+
+A 204 2044 4090 * 3232 * 4067 * * * * * 4226 2657 * 4277 4183 3281 3168 * * 204
+ 0 * * * * * * 6265 0 0
+
+P 205 2224 * * * * 3697 * * 3564 * * * 1337 * * 2703 3740 * * * 205
+ 0 * * * * * * 5354 0 0
+
+P 206 2824 * * 1973 * * * * 2729 * * * 2612 * 2734 2844 * * * * 206
+ 0 * * * * * * 3978 0 0
+
+P 207 * * * * * * * * * * * * 0 * * * * * * * 207
+ 0 * * * * * * 2833 0 0
+
+T 208 * * * * * * * * * * * * * * * * 0 * * * 208
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME cbf4a79de0130a2230da880af29a77c4
+FAM
+FILE cbf4a79de0130a2230da880af29a77c4
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 14:26:52 2013
+LENG 195 match states, 195 columns in multiple alignment
+FILT 115 out of 1145 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.9
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
+HHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9977677888873699999798888866999999999999986266896899999889227987677767899999999835267999639999999999
+98655415778986199999279978981669999999987899899999688433424899999998287985499759999999999999729
+>Consensus
+xxxxxxxxxxxxxdivxllDxSxSmxxxxxxxxkxxxxxxxxxlxxxxxxvxvvxfxxxxxxxxxlxxxxxxxxxxxxixxlxxxxgxtxxxxalxxaxx
+xxxxxxxxxrxxxxxxivliTDGxxxxxxxxxxxxxxxxxxxxixvxxvxxgxxxxxxxxxxxlxxiaxxxxxxxxxxxxxxxxlxxxxxxixxx
+>cbf4a79de0130a2230da880af29a77c4
+GSEALRGSPQEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVR
+ELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREK
+>gi|260837234|ref|XP_002613610.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]gi|229298996|gb|EEN69619.1| hypothetical protein BRAFLDRAFT_127098 [Branchiostoma floridae]
+---------------LYPYGSySGGYPPSNMEKTMG-PGNYRVPLVagGETITIGSIKKTEETSPseslsaekQAVVAAQDTRECTMSSITiySEERLRG
+TKKTYSGNGWLPRDPSWV-----VDSAGPAWVDSNGVTWEDV--------------VTVDNVQSGDQ------RQVFGGFQGKARYWKLVITQTYTGWQP
+YVRE----
+>gi|75055238|sp|Q5RER0.1|ITIH5_PONAB RecName: Full=Inter-alpha-trypsin inhibitor heavy chain H5; Short=ITI heavy chain H5; Short=ITI-HC5; Short=Inter-alpha-inhibitor heavy chain 5; Flags: Precursorgi|55725936|emb|CAH89747.1| hypothetical protein [Pongo abelii]
+---APKDLPPLPKNVVFVLDSSASMVG---TKLRQTKDALFTILHdlRPQDHFSIIGFSNRIKVWKDHF-DISHSRQHQGwqsvhSPYVAH---wrhrhQ
+RGLAEGHQAPQQVRGPQWHW---RPERVPHCLPDG--weahGrgdAHPQDPQQHPRGRPRPSLHLH-IGIGNDV----DFRLLEKLS-------------
+--------------
+>gi|320105837|ref|YP_004181427.1| VWFA-like domain-containing protein [Terriglobus saanensis SP1PR4]gi|319924358|gb|ADV81433.1| VWFA-related domain-containing protein [Terriglobus saanensis SP1PR4]
+---------RQPVSILVVMQTGGAGQ-RQFEYYRN-VPTLLDAMGgSAKHETAVMTFDSAPEDLFPFVSNPA--RLKQAFTHPHAGDHGAAVLDAVNYAI
+DLFKGKPAGTR----RIILLLSQPQDHGSKVHAEEVVRRLGENNITIFSVSFSPE------KTWLKD-----------------------------
+>gi|94967802|ref|YP_589850.1| hypothetical protein Acid345_0771 [Candidatus Koribacter versatilis Ellin345]gi|94549852|gb|ABF39776.1| hypothetical protein Acid345_0771 [Candidatus Koribacter versatilis Ellin345]
+---TVQSGSELPLRLGVLVDTSTKAHGDAYAAALHAISNFVQGAMlEQNVRVFFVPFANKT----DMSAFMSKDDLAHYQLKIS-KGDGAALYDAIVGAC
+KERMAVE--ETHPARRVLVVISNGEDNQSRFTYQQAIAAAQSAGVVIFTVNTGSGGSGDHGEVRLREFSDQTGGI-IFPGSNPGTISRPFEAISDQ
+>gi|163792343|ref|ZP_02186320.1| hypothetical protein BAL199_15888 [alpha proteobacterium BAL199]gi|159182048|gb|EDP66557.1| hypothetical protein BAL199_15888 [alpha proteobacterium BAL199]
+-----------DLELVLAVDSSASVDYSEFSLQLEGLALAFRDPElaatisagiHGVIAVTLMEWSSIGRQEvalpwTRIATTADASAFADAIDRSpRQL
+QtGATSISSAIEFANGLFAGN---GFEGVRRVIDLSGDGYNNQGE-PLDITRADVLATGTTINALAIENQVLGLTEYFEQQLIGG--VAAFAMRATDYRD
+Y----------
+>gi|84386024|ref|ZP_00989054.1| transporter [Vibrio splendidus 12B01]gi|84379340|gb|EAP96193.1| transporter [Vibrio splendidus 12B01]
+GPTwQQQPSPffEDNSELVIALDVSDSMNKTDIqpSRLERAKQKINQLVElRGDAKTGLVIYGGSAHVAMPVTKDKELtRYFLDVLDGSLLPDNESKPAS
+VLKPT-LELISQAK-----APSTVLILTDKTNDEAIEEFTKAF-EQQQHQVIVWAMGENpqsGGNGTAGltetQLASLSQLAQAGHGNMVSFTHDASDVE
+AVYQSIQNN
+>gi|242278087|ref|YP_002990216.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]gi|242120981|gb|ACS78677.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
+---AESRIVlkPKVDAFAYFVDTSPSMsqtydstGNPKIIAGLNALKRLNNVVPELGYDSALYAMP--DFATYSPKSMFTRAAMAKGIASVPSdlpfF-Q
+STPIGTGFSDL-NGVVKNWGG-----KFAVIFVSDGLTNsgRNPALVVSDMAKTYGDRFCLHIISVADTA---RGKANLKRLAS----------------
+----------
+>gi|238924634|ref|YP_002938150.1| hypothetical protein EUBREC_2277 [Eubacterium rectale ATCC 33656]gi|238876309|gb|ACR76016.1| Hypothetical protein EUBREC_2277 [Eubacterium rectale ATCC 33656]
+----EVETPGFSVD--ILMDASSSRKQMQ-QKIAAQAYVLSKSLTNCGIPVQIYSYCSirGYTVMHIFKEYDDYGVEDELFH--FVAAGNNRDGLALRAA
+SHLM------ELsPKPKKLLFMFSDASPQDDQIagegafykdreytdalavkDTVNEVQRLKNHGIDVIGIFMGSAH----DSELATKIFG----RSLVK
+IKSINEFADAVGRVLNE
+>gi|307720601|ref|YP_003891741.1| hypothetical protein Saut_0680 [Sulfurimonas autotrophica DSM 16294]gi|306978694|gb|ADN08729.1| protein of unknown function DUF58 [Sulfurimonas autotrophica DSM 16294]
+----------RELNVVIASMLNGSVYFGSKRFKQDVIAEITAMLSfstiKNGDLLSSYIFSDKMESFLKPSKKLFSvHKSTDEILNFDPLNKKADYKVLA
+DTLF---------KRLKRKSLIVIVGDFF---EIPDFKVl------AKKHEVVAVIVRDR-------LEET-----------------------------
+-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 3106 * * * * 825 * * * * * * * * 3272 * 3327 3102 * * 1
+ 0 * * * * * * 4733 0 0
+
+S 2 * * * * * * * * 3153 * 4138 4085 755 * * 3118 3963 * * * 2
+ 0 * * * * * * 6604 0 0
+
+E 3 3483 * * 2860 * 3510 * 4536 4420 * * * 1516 * * 3334 4213 4435 4429 * 3
+ 80 4213 * 0 * * * 7121 1074 0
+
+A 4 2659 4860 * 4938 * 3545 4741 4948 4009 3907 * * * 3875 4861 2510 2463 * * 5018 4
+ 0 * * * * * * 7949 0 0
+
+L 5 4201 5306 5521 3951 4534 * 5254 4380 5440 3734 * 4291 4215 3277 * 3797 4277 1931 5353 * 5
+ 39 5221 * 1000 1000 * * 8435 1031 0
+
+R 6 4414 * 4034 4586 * * * * 3057 * * 4574 2965 2523 3158 3279 4247 3075 * * 6
+ 68 4441 * 1329 732 * * 8640 1260 0
+
+G 7 4262 * 4488 2457 * 2872 5657 5722 3496 4778 5972 4176 4218 4303 4763 3226 4762 5791 5924 5059 7
+ 0 * * * * * * 8870 0 0
+
+S 8 5022 1065 * 5836 4858 4798 * 4863 * 4275 4165 4882 4866 5742 5747 3839 4869 4271 * * 8
+ 350 6016 2322 1000 1000 * * 9000 1000 0
+
+P 9 5599 * 3649 3480 4790 5480 * * 4078 4026 * 5777 1873 3802 * 3304 3505 3668 * * 9
+ 375 2126 * 820 1205 643 1476 8767 2865 2886
+
+Q 10 3888 * 6012 2827 * 4158 6139 * 3705 4441 4508 4067 4359 3688 3170 2565 4081 6164 * * 10
+ 141 3429 * 926 1078 357 2189 9239 1996 1607
+
+E 11 3461 6131 5224 3668 4787 2220 * 5487 3199 3640 6103 6254 4727 3546 4250 4986 4694 4225 * * 11
+ 18 6368 * 0 * 0 * 9670 1000 1000
+
+D 12 3656 * 3569 4427 6475 3418 6467 * 4516 3923 * 3966 2474 4473 5104 3706 3561 5521 5381 4683 12
+ 13 6750 * 2000 415 * * 9801 1000 0
+
+S 13 2599 * 6459 * 3720 5464 6334 3318 4225 2790 3547 6206 6205 * 4222 4544 3551 3536 * 4895 13
+ 0 * * * * * * 9859 0 0
+
+D 14 4618 * 971 3774 6708 6905 4570 * * 6904 * 3454 5470 4993 3932 5053 4127 6725 * * 14
+ 27 * 5733 * * * * 9944 0 0
+
+I 15 5604 6612 * 6587 4203 * 6765 1786 * 2136 4562 * * * 6573 * 5104 1858 * 5639 15
+ 0 * * * * * 0 10087 0 1201
+
+A 16 3100 6042 * * 4999 5225 * 3036 * 2997 4129 * * * 6861 5310 4237 1642 6638 3496 16
+ 14 6681 * 2322 322 0 * 10199 1028 1201
+
+F 17 6677 * * * 1567 * * 2456 * 1757 6988 * * * * 6158 6485 3365 6622 4863 17
+ 14 6678 * 0 * * * 10269 1008 0
+
+L 18 3728 4733 * * 6779 * * 2989 * 1184 5639 6867 6028 * * 6146 6565 2040 * * 18
+ 0 * * 0 * 0 * 10241 1008 1008
+
+I 19 5279 * * * 5005 6577 * 2141 * 1380 4244 * 6749 * * 6415 * 2253 6158 5379 19
+ 0 * * * * * * 10269 0 0
+
+D 20 6710 * 259 5095 * 6059 5234 * * * 6415 5878 * 5208 * 6151 6158 * * * 20
+ 0 * * * * * * 10269 0 0
+
+G 21 3348 5249 4761 3654 4788 3367 * 4104 4804 5511 6798 6709 * 5136 4619 3058 2653 3068 * 5366 21
+ 34 6059 6882 0 * * * 10269 1147 0
+
+S 22 5397 6875 6678 * * 6722 * * * * * 5625 * * * 278 3276 * * * 22
+ 0 * * * * 0 * 10262 0 1001
+
+G 23 3256 * 4297 4020 6945 1475 * 6785 5190 6000 * 5645 6695 5802 3691 2941 3992 5106 * 5977 23
+ 25 * 5839 * * * * 10269 0 0
+
+S 24 4024 6783 4790 * * 4868 6766 6689 5333 5770 6789 6775 6151 6870 5577 619 4138 6566 * 5880 24
+ 27 6774 6769 0 * 978 1023 10239 1185 1183
+
+I 25 4218 6151 * 6730 * 6716 6777 3027 * 3639 1087 5708 * * 5879 5280 4521 3187 * 6038 25
+ 67 4790 6779 3271 158 * 0 10242 1568 1210
+
+I 26 3383 * 3708 4288 * 2980 6690 5815 3784 4013 * 5255 5356 3514 3779 2806 4430 4377 * 4668 26
+ 231 6530 2866 2000 415 * 0 10243 1015 1409
+
+P 27 3563 * 3730 2990 5263 2320 6674 5661 5001 4473 6466 5088 3001 3955 * 3679 5574 5080 6376 6475 27
+ 62 6932 4881 2322 322 253 2637 10038 1000 3865
+
+H 28 3287 * 3680 3273 * 3567 5167 * 3807 5481 5277 3322 5689 3569 4319 3461 4337 4473 * 4470 28
+ 111 3756 * 1440 663 1748 510 10186 2469 1943
+
+D 29 4338 * 2509 3276 6685 3908 6742 6906 4468 4160 6563 3159 4692 3924 3456 3863 4936 6754 * 4397 29
+ 197 4214 3758 2444 293 2187 358 10206 1866 1617
+
+F 30 6629 * * 5074 2340 7055 6736 2962 6308 2608 4139 * 5006 * 4885 5124 5738 4542 2643 3864 30
+ 87 4097 * 1905 448 0 * 10093 1976 2814
+
+R 31 3785 * 2795 2707 * 4550 * 5355 3714 4525 5931 4446 4854 3716 3879 3612 3546 7023 * 5184 31
+ 36 5886 6994 1345 722 * * 10292 1195 0
+
+R 32 2711 6797 3616 5363 6436 4727 5266 4969 3005 3714 5092 5796 6895 3619 2984 4404 5086 4973 6737 4537 32
+ 25 5891 * 3715 114 * 0 10281 1222 1000
+
+M 33 2261 * * 4470 6878 6737 5842 3350 4055 3061 3394 6894 * 4785 6940 5234 3532 2774 * 5280 33
+ 14 * 6740 * * * 0 10281 0 1000
+
+K 34 4275 * 5152 6095 6583 6708 6627 3605 1517 4373 5530 5835 * 3714 2641 5202 4484 5109 6683 6761 34
+ 29 6609 6713 2000 415 0 * 10276 1001 1206
+
+E 35 2815 * 2557 3724 6624 3797 5140 6848 3824 4745 * 3674 5906 3358 3785 3943 4845 6515 6718 * 35
+ 81 * 4188 * * * 0 10271 0 1006
+
+F 36 1985 6722 5672 5635 2463 5602 * 5105 5578 3254 5813 6720 6820 5833 4994 5184 3771 3558 4871 4775 36
+ 12 6925 * 2322 322 206 2909 10103 1000 2101
+
+V 37 2542 6980 * * 4745 7147 * 2684 5503 2129 4495 6754 6080 * 5764 5859 4539 2602 6164 4507 37
+ 0 * * * * * 0 10275 0 1000
+
+S 38 3109 6943 3565 3751 4730 5365 6960 4396 3087 3785 5268 4591 5010 3490 3804 4245 5105 4933 6701 5254 38
+ 15 6567 * 0 * * 0 10275 1027 1000
+
+T 39 3226 * 3486 3294 5895 3764 6877 5804 3436 4416 5336 3250 6860 3722 4592 3830 3867 4938 * 5743 39
+ 0 * * * * * 0 10275 0 1000
+
+V 40 3521 * * * 2856 6730 * 2500 6399 1721 3691 6567 * * 6164 * 4890 3126 * 5429 40
+ 0 * * * * 0 * 10275 0 1000
+
+M 41 2843 * * 6768 4350 * * 2766 * 2404 4358 5852 * 7273 5359 3884 3577 2331 * 5697 41
+ 10 7222 * 0 * * * 10292 1000 0
+
+E 42 3916 * 3131 2851 6775 4570 * 6838 2794 4444 6897 4485 5664 3937 3340 3494 4371 4131 * * 42
+ 21 * 6115 * * * * 10292 0 0
+
+Q 43 3135 * 4510 4850 6728 3630 5317 5067 2996 3931 6432 6605 5499 3218 3152 2909 5337 4911 * 5922 43
+ 79 4902 5676 1805 487 * 0 10280 1543 1158
+
+L 44 4096 6720 * 6968 2268 * * 3845 * 1240 3861 * * 6743 6756 4539 6898 5112 * 4166 44
+ 38 * 5278 * * * 0 10268 0 1566
+
+K 45 3736 5548 3193 4284 5776 3326 4804 6701 3992 5097 5225 4062 4246 3623 4812 3484 3980 4271 7039 5701 45
+ 2354 444 3846 1874 460 439 1931 10244 8805 2098
+
+K 46 4115 5649 3836 3284 * 3009 5777 5094 4060 4227 5776 3932 2727 4469 3241 4371 5616 6615 * * 46
+ 12 6899 * 1000 1000 0 * 10251 1000 2541
+
+S 47 3668 5922 2786 3492 * 5030 5405 6876 3903 4820 6722 3622 2730 3825 5146 3146 6754 5263 * 5840 47
+ 52 6615 5314 2000 415 * * 10298 1028 0
+
+K 48 4172 * 3276 4959 * 2665 5191 5662 3295 5339 5482 3384 5188 3565 4368 3355 4567 5209 7112 5312 48
+ 14 * 6712 * * * 0 10278 0 1389
+
+T 49 3483 7030 2345 4650 5927 4993 5305 2934 6970 4409 6624 * 5819 * 6726 4021 2742 2930 6586 5862 49
+ 0 * * * * 0 * 10258 0 1582
+
+L 50 4734 * 4437 3972 6042 5247 4003 6776 3591 4233 5746 4117 5223 2921 1933 5363 4640 6529 * 5012 50
+ 0 * * * * * * 10298 0 0
+
+F 51 4134 * * * 3025 * * 2546 * 2869 5224 * * * * 5213 4446 1418 * 4714 51
+ 0 * * * * * * 10298 0 0
+
+S 52 1907 5898 6410 4546 6750 1682 6904 * 6529 * * 4608 5867 5922 * 2665 4023 6855 * 5674 52
+ 14 6712 * 1585 585 * * 10298 1008 0
+
+L 53 4824 6523 * * 3807 6604 * 2306 * 2078 4523 * * * * 4821 5596 1585 * * 53
+ 0 * * * * * 0 10271 0 1008
+
+M 54 4619 6697 * 5618 5115 5836 * 2429 * 3175 4245 5742 * 6693 5431 5010 4485 1809 4594 3648 54
+ 0 * * * * * 0 10271 0 1008
+
+Q 55 4293 * 5850 5013 3760 3117 5718 4200 4678 4120 5907 4917 5724 4608 4450 3248 2247 3831 * * 55
+ 12 * 6949 * * 0 * 10271 0 1008
+
+Y 56 6754 * * * 973 6797 5694 * 6082 4751 * 6844 * * * * * 5254 5643 1531 56
+ 13 6846 * 0 * 0 * 10284 1000 1000
+
+S 57 2859 5922 3711 5932 * 2180 5548 * * 6841 5721 3002 * 6720 5283 1871 4592 * * 6902 57
+ 24 7030 6812 5585 30 * * 10298 1016 0
+
+E 58 4103 * 2525 4138 * 3556 4598 * 5792 7010 5662 3731 5757 4597 4489 2075 3140 * * 6809 58
+ 152 3325 * 2528 275 992 1008 10281 2988 1224
+
+E 59 5841 * 3566 2669 6710 3589 3853 5274 3311 6846 6900 4158 4437 4478 3628 3136 3744 * 5716 * 59
+ 95 4770 5192 1980 422 0 * 10287 1634 1014
+
+F 60 2317 * 5887 5685 5026 4075 6812 4063 4814 4760 6417 5000 3436 6598 * 3394 3354 2769 6692 4764 60
+ 99 4426 5668 1673 543 613 1531 10257 1783 1378
+
+R 61 4626 6892 5356 3120 4758 5191 4262 5078 3362 5846 6740 3529 5779 4061 2702 3989 3884 4338 * 4541 61
+ 14 6665 * 1585 585 * 0 10238 1008 1414
+
+I 62 3882 * 3854 3115 * 5575 6712 3841 5189 3385 5821 5895 3502 4976 5109 5125 3222 2416 6806 6883 62
+ 22 6026 * 3000 193 * 0 10238 1147 1414
+
+H 63 4211 * 4247 3541 4636 5130 5173 4280 5935 2675 4803 7085 4071 4116 5437 5151 5299 2419 5557 4599 63
+ 156 3416 6780 2103 382 1620 568 10238 2741 1414
+
+F 64 3474 7257 * * 2357 6463 5694 3958 5437 3234 4311 * 5265 5313 5957 3812 4723 2677 4775 3958 64
+ 25 5861 * 1727 519 527 1708 10255 1368 1397
+
+T 65 4738 6805 3349 5441 * 4795 4519 4923 3669 4495 5925 3806 2159 6063 4062 3298 4358 5303 5991 5743 65
+ 37 5302 * 2070 392 * 0 10299 1362 1000
+
+F 66 5263 5034 * 6845 2975 5798 6356 4127 5140 1408 4824 * 3967 6749 6669 5215 6810 3654 5234 4192 66
+ 50 4868 * 2129 374 0 * 10299 1518 1000
+
+K 67 3723 * 3547 5798 5522 2984 6900 6776 4713 4792 * 3816 4202 4713 4127 3157 2467 4436 * 5577 67
+ 84 4884 5444 811 1218 * * 10298 1546 0
+
+E 68 3878 * 3144 3843 6623 3793 6855 6884 3548 4878 * 3850 3944 3762 3990 3290 3045 5867 6928 6560 68
+ 43 * 5100 * * 890 1119 10237 0 1278
+
+F 69 4078 * 2811 5281 3098 4495 4822 4003 5006 4078 6851 3954 3617 5319 4989 5177 5757 4628 7009 3086 69
+ 41 5580 7158 2159 366 * 0 10240 1193 1648
+
+Q 70 5785 6809 3714 3984 4890 4616 5703 4592 2740 4679 4553 3960 4173 5308 3970 3583 3384 6682 6574 4087 70
+ 54 5148 6905 763 1283 1287 761 10251 1391 1817
+
+N 71 4171 6985 2718 4138 5053 * 5783 * 4514 5261 5718 2782 6655 5251 4430 2083 3097 6646 * * 71
+ 147 * 3369 * * 357 2190 10283 0 1579
+
+N 72 3977 6529 3574 4035 5790 5761 4302 3459 3220 3632 6781 4805 4008 4404 3732 4469 4378 4157 * 4804 72
+ 404 2700 3472 1279 767 3699 116 10179 3495 2861
+
+P 73 3221 * 3167 3617 * 4588 5380 6429 2948 6481 5487 3974 5089 3656 4251 3269 3783 4665 * 5723 73
+ 25 6754 6949 3807 107 0 * 10054 1013 4083
+
+N 74 3707 6083 3133 2729 5101 4858 * 6787 3542 5359 5190 4136 6585 3462 3582 4293 3912 4128 * 5848 74
+ 12 6901 * 0 * * 0 10292 1005 1000
+
+P 75 3402 6949 6690 6828 3164 5331 6893 3340 5913 1856 4189 5942 7008 5526 5454 6439 4626 2654 * 6930 75
+ 0 * * * * * 0 10292 0 1000
+
+R 76 3197 * 4475 3827 5886 6621 6337 4386 2943 2617 4575 4941 * 4836 3427 4147 4851 3754 * 5182 76
+ 62 4906 6804 2135 373 * 0 10292 1522 1000
+
+S 77 3150 * 2834 3001 6710 4444 5276 6929 3731 5357 7066 3802 * 3265 3872 3009 5114 * 5729 6701 77
+ 0 * * * * * 0 10283 0 1194
+
+L 78 2132 5871 4828 4153 4919 4923 5722 3420 3266 3334 6860 * * 5658 3694 4078 4262 5172 * 4754 78
+ 32 6330 6763 2322 322 0 * 10283 1061 1194
+
+V 79 4103 5382 * * 3667 6966 * 2061 * 1848 4235 * * 5549 6896 5203 5285 2722 6589 5960 79
+ 25 5891 * 1000 1000 * 0 10278 1177 1034
+
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+
+//
+�HHsearch 1.5
+NAME cd06863eb01c4bcc5ae9b1817480cf17
+FAM
+FILE cd06863eb01c4bcc5ae9b1817480cf17
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:16:27 2013
+LENG 226 match states, 226 columns in multiple alignment
+FILT 129 out of 1445 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEE
+CCCCCCCCCCEEEECCCCCCCEEEECCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCEEECCEECCCCEEEEEEEEEECCCC
+CCCEEEEEEEECCCCEEEEEEEEECC
+>ss_conf PSIPRED confidence values
+9389675888996899899998963788888669999968999958999995368841106766762699841543168899826680218369999973
+6766545332055315421000000000024567428631202474299999767887997499988995247720100065399789999999941336
+79879999995898878999996088
+>Consensus
+xxxxxxpxxxxvxxGxxvxLxCxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxLxIxxvxxxDxGxYxCxxxx
+xxxxxxxxxxxxxxxxxxxxlxVxxxxxxxPxvxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxgxxxxxxxxxxxxxxxxxxxxxsxlxixxxxx
+dxxxyxCxvxxxxxxxxxxxxixxxx
+>cd06863eb01c4bcc5ae9b1817480cf17
+DVQLVESGGGLVQPGGSRKLSCAASGFTFMRFGMHWVRQAPEKGLEWVAYISSGSSTIYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTALYYCARSG
+GIERYDGTYYVMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR
+PSETVTCNVAHPASSTKVDKKIVPRD
+>gi|293338546|gb|ADE43520.1| anti-2,4,6-trinitrotoluene scFv antibody 6-3 [synthetic construct]
+----------------------------------------------------------------------------------------------------
+------------------------------mgQVQLVQSGAEVKKPGA--SVEGLLQDF-----------------------------------------
+----------------------------
+>gi|33569904|gb|AAQ21854.1| immunoglobulin kappa chain variable region [Homo sapiens]
+----------lAVSLGERATINCKSSQSVLYSSnnkn-------------yllgtsrnqdSLLSCSF-----TGHLPGNPGSLTDSVaAGLGQISLSP--
+----------------------------------------------------------------------------------------------------
+------------------------------------------
+>gi|326674722|ref|XP_689309.4| PREDICTED: poliovirus receptor-related protein 2-like [Danio rerio]
+-QHVRVEPEVVSFPGQTVTLRCQFPNPGDTqLTQVSWIFERTDTERTNIAVFHPNFGVNYPTTSPvSGRVTFVSNPpTLDNPSIQIKDVKMTDEGRYICE
+--------------YATYPSGNEqgvssLVMLAKPKNTATTVTVSAGKTPVI----VARCESSNGRP-AATITW--STALNGNVTTPKKTDnpDNTVSIQ
+SVYMLAPQPEDnGKDISCIVSHRTMAQPETFPMK---
+>gi|168985092|emb|CAQ09233.1| major histocompatibility complex, class I, C [Homo sapiens]
+----------------------------------------------------------------------------------------------------
+-----------------------------HPKTHVTHHP---VSDHEASRR-WNLpevgscggAFWrRAEIHVPCaARGAARAPHPE-------------
+------------------------------------
+>gi|17570629|ref|NP_510069.1| 2 (Zwei) IG-domain protein family member (zig-2) [Caenorhabditis elegans]gi|18104589|gb|AAL59607.1|AF456249_1 secreted 2-immunoglobulin-domain protein ZIG-2 [Caenorhabditis elegans]gi|3877044|emb|CAA92170.1| C. elegans protein F42F12.2, confirmed by transcript evidence [Caenorhabditis elegans]
+---------SNVTFGEKFVLSCGA--NGAPLPSIYWELNGMR--------IQGEETSNVYENILNdGKQVSN--AAMVSSHYRIPCATARNSGAYKCIID
+NG----------LTKLEHVAKVFVGGnktncalNDNGAPFISMTVDFRLEISNNAVALSC----RSETATEWSW-------HKGEQLLTNDGERYQMFPS
+gdLIIRNISWSDmGEYNCTARNHFGETTAITFLYP--
+>gi|149597420|ref|XP_001520231.1| PREDICTED: similar to butyrophilin [Ornithorhynchus anatinus]
+--VIGPAEPVLALEGGDTEMPCHLNPKESAeFMEVRWFR----SRPSNIVHLYDNREELFREQMEEyqGRTELVRDaMDYGSVAVRLLNVRVSDEGNYHC
+SFYDG------------NTVDRAPLELQVvGSTAQCSIFMEHFSWIS-----LILDLFP-DWIPDlfPI-LQMrelsEGGVNIKCPKSYGIGHTCTMFSL
+ddifgnfisaplfptaLSLMVALGVTLPV--LGLIIAGglyLIWKQNMDIEK----
+>gi|221330930|ref|NP_001137898.1| CG42256, isoform F [Drosophila melanogaster]gi|220902492|gb|ACL83253.1| CG42256, isoform F [Drosophila melanogaster]
+--------------------vaknpaaeikytallqvKGSVLAYPS--QKLN-TEHKKRKPHKYRSHLL-----------SKL-----kLSQ----CSLT
+LAA----slkp----FI-----------------------------------------------------------------------------------
+------------------------------------------------
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
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+D 226 * * 1726 * * * * * 2746 * * 3021 1748 * * 2969 * * * * 226
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+
+//
+�HHsearch 1.5
+NAME ced02dc66c62cb64fc91194b87a4189c
+FAM
+FILE ced02dc66c62cb64fc91194b87a4189c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:27:33 2013
+LENG 101 match states, 101 columns in multiple alignment
+FILT 103 out of 1324 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
+C
+>ss_conf PSIPRED confidence values
+9770899999999999997043899897769999999999868760689999999999998667999818299999999999999999998770469888
+9
+>Consensus
+xxxxxxxxxxxlxxxFxxxdxxdxxxgxlxxxelxxxlxxxxxxxxxxxxxxxxxxxxxxxxdxxxdgxIxfxEFxxxlxxxxxxxxxxxxxxxxxxxxx
+x
+>ced02dc66c62cb64fc91194b87a4189c
+MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRK
+K
+>gi|323456850|gb|EGB12716.1| hypothetical protein AURANDRAFT_18505 [Aureococcus anophagefferens]
+-------GIVALARNFRIAD-RDRS-GALREVEFERSVKN-----SQSGLDSSDISALFAYFDADRSGEVDYDEFLAAIRGPPNARRQA-----------
+-
+>gi|168054523|ref|XP_001779680.1| predicted protein [Physcomitrella patens subsp. patens]gi|162668878|gb|EDQ55476.1| predicted protein [Physcomitrella patens subsp. patens]
+-----VKRTksgivsqalnapctihcseAELEAAFKVFD-ANGD-GRICITELGKVLGS-----LSGCevTEQELQLIMNDVD-KNQDGFISLEQFKAAN
+KTLTshlaDNEtpkEDSIREA--------
+>gi|341876965|gb|EGT32900.1| hypothetical protein CAEBREN_17400 [Caenorhabditis brenneri]
+-----SLTSEQwkdLGDRFQTiCH-TTQE-GSLKREEIQEAFKI-----LGLDIPTYELRPLLDrAFgakeI------MDVKDVVQLYVKIRE-------
+----------
+>gi|195121290|ref|XP_002005153.1| GI20321 [Drosophila mojavensis]gi|193910221|gb|EDW09088.1| GI20321 [Drosophila mojavensis]
+----SKELINELRLIYDKHD-VNRT-GKIDIRQLYQIMFD-----VGYAPTEGEVHEFMAEADEDDSSYIGFDAFIKMLAPKlnEMFSEENLGK------
+---
+>gi|66808853|ref|XP_638149.1| EF-hand domain-containing protein [Dictyostelium discoideum AX4]gi|74996819|sp|Q54MZ4.1|MCFB_DICDI RecName: Full=Mitochondrial substrate carrier family protein Bgi|60466585|gb|EAL64637.1| EF-hand domain-containing protein [Dictyostelium discoideum AX4]
+------------------------------MSNNNNNNNN-----NNNNNNNNNN----NNNNNNNNDKNNNNNIDSSIK--------------------
+-
+>gi|145507732|ref|XP_001439821.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124407016|emb|CAK72424.1| unnamed protein product [Paramecium tetraurelia]
+----------RIWGLFKQFDID--NKNYITTMDVRRAFER-----RGKSLSTVKINTMFKEISLDSQDRIDFQRFQDIMLADslkSQ-------------
+----
+>gi|51889273|emb|CAH04268.1| protein kinase C activity reporter protein [synthetic construct]
+----------------lgmdelyksgamepkriregylvkkgsvfntwkpmwvvlledgiefykkksdnspkgmiplkgstltspcqdfgkrmfvfkitt
+tkqqdhffqaafleerDAWV-RDinkaikciEG-GQKfarksTRRSIRLPETI------------------dlgalylsmkdtekgIKELNLEKDKK-if
+nhcfTGN-------cvidwlvS--------------------
+>gi|297562741|ref|YP_003681715.1| signal transduction protein with EFhand domain [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]gi|296847189|gb|ADH69209.1| putative signal transduction protein with EFhand domain [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
+----VHASYQMLWLELLRH-GSPAQ-ARLDRDAFVAAMHAASEDR----SR---fnmtegvAEAVFDLLDTDDGGSISEAEYVRYAEVLGA---------
+--------
+>gi|148235622|ref|NP_001079452.1| calpain 8 [Xenopus laevis]gi|27503196|gb|AAH42349.1| Capn8-a protein [Xenopus laevis]
+-LDPSNVQVESeIEDILNELEQKKME---MSAEDLRINLSRILSKkkdIKSDGFSLTTCKEMINLFDTDLTGKLNCKEFRPLWIKL--------------
+-----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+
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+
+T 15 2930 5846 5736 5409 4398 5256 6081 3444 4369 2594 4441 4773 * 5015 4681 4167 4217 2813 * 6576 15
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+F 16 * 6013 * * 594 * 5262 5136 * 3519 5118 6883 * * * 6571 * 4810 5048 3912 16
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+A 54 3859 * 3576 2662 4429 4114 * 3715 4006 3918 5485 5497 5553 5168 5189 4824 4347 3450 4660 4507 54
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+F 72 4241 5991 6919 6972 1340 6895 * 4579 5131 2453 5882 6339 6308 * 4535 4877 * 5667 6822 3170 72
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+
+Q 73 4001 * 2330 1856 6165 5061 6490 6221 4237 5836 * 4046 6476 3492 5824 4296 4260 4982 * 6590 73
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+E 74 4415 * 2744 939 6636 4217 6415 * 5931 * * 5654 * 3160 * 4350 6725 * * * 74
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+ 0 * * 0 * 1605 575 10020 1000 1304
+
+C 76 4368 5216 5595 5272 5546 4947 6875 3897 3744 2423 4499 5553 * 5389 4382 5408 3893 2238 5388 5413 76
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+V 77 3226 * 4070 3543 * * 4634 5092 3236 4061 * 3608 5835 3515 2982 3216 4068 5572 * 6590 77
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+I 82 4109 * 4316 6282 3331 * 6064 3500 5559 1820 4223 6264 4218 4554 5326 4572 4915 4733 4505 5202 82
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+A 83 3919 * 6190 5147 * 3226 4854 5144 3689 3607 4518 3484 4186 3540 4020 4378 3545 3963 * 5102 83
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+
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+
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+
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+
+E 91 * 4396 * 2658 * 4775 4861 3240 2986 4607 4591 * * 3749 2858 4143 * 2840 * * 91
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+
+G 92 4455 * 3458 2726 * 3362 3944 * 2225 3901 * * * 4306 * 2193 * * * * 92
+ 0 * * * * * 0 6336 0 1277
+
+F 93 1846 3326 * 3128 3303 * * * * 2206 * * * * 3625 3202 * * * * 93
+ 0 * * * * 0 * 4802 0 1277
+
+P 94 2438 * * * * * 2035 * * * * * 807 * * * * * * * 94
+ 378 * 2116 * * * * 3326 0 0
+
+D 95 * * 1635 1671 * * 2447 * * * * * * * 2468 * * * * * 95
+ 0 * * * * 0 * 2493 0 1285
+
+K 96 2162 * * * * 928 * * 1994 * * * * * * * * * * * 96
+ 0 * * * * * * 2910 0 0
+
+Q 97 * * * * * 1440 * * * * * * * 1657 * * * * 1669 * 97
+ 0 * * * * * * 2525 0 0
+
+P 98 * * * * * * 2410 * * * * * 301 * * * * * * * 98
+ 0 * * * * * * 2525 0 0
+
+R 99 * * 2054 * * * 1981 * * * * * * * 983 * * * * * 99
+ 0 * * * * * * 1862 0 0
+
+K 100 * * * * * * * * 422 * * * * 1981 * * * * * * 100
+ 0 * * * * * * 1862 0 0
+
+K 101 * * * * * * * * 0 * * * * * * * * * * * 101
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME cf096ff6881b75de1c34ab8525847a53
+FAM
+FILE cf096ff6881b75de1c34ab8525847a53
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:03:46 2013
+LENG 68 match states, 68 columns in multiple alignment
+FILT 5 out of 7 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEECHHHHEEECCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+91156889988888987699999871898753577888602686666334778601052101013469
+>Consensus
+xxxxxexeRqkxxeiExxksxxxRxfGxAxxddkxaxxyaxFDxxdxrvQxAEFYRFnDxxxnkxGYF
+>cf096ff6881b75de1c34ab8525847a53
+MEQLTKNQRKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQPAEFYRFHDAEVNTFGYF
+>gi|71843046|gb|AAZ49227.1| gpB [Enterobacteria phage WA11]
+--PDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRVQPAEFYRFHDAEVNTFGYF
+>gi|89888610|ref|YP_512370.1| gpB [Enterobacteria phage ID2 Moscow/ID/2001]gi|71842743|gb|AAZ48950.1| gpB [Enterobacteria phage ID2 Moscow/ID/2001]
+--QHLEAERQERATIEAGKEICRRRFGGATCDDQSAKIHAQFDPSNRSVQPAEFYRFNDNEINKYGYF
+>gi|242346744|ref|YP_002985206.1| internal scaffolding protein gpB [Enterobacteria phage St-1]gi|240129555|gb|ACS44788.1| internal scaffolding protein gpB [Enterobacteria phage St-1]
+--SDSERERQKAIDLEHRRAAFARHFGCAPGSEKHVENYSSFDEKDTRVQLAEFYRFNDGHLKKWGYF
+>gi|71842809|gb|AAZ49010.1| gpB [Enterobacteria phage NC28]
+--SDSERERQKAIELEHRRSAFARHYGCAPASEKYVEKYPSFDEKDTRIQLAEFYRFNDGHLKKWGYF
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+E 2 * * * 0 * * * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+Q 3 * * * * * * * * * * * * 2536 1249 * 1297 * * * * 3
+ 0 * * * * * * 1804 0 0
+
+L 4 * * 788 * * * 2106 * * 2408 * * * * * * * * * * 4
+ 0 * * * * * * 1804 0 0
+
+T 5 * * * * * * * 2536 * 2106 * * * * * 1297 2408 * * * 5
+ 0 * * * * * * 1804 0 0
+
+K 6 * * * 301 * * * * 2408 * * * * * * * * * * * 6
+ 0 * * * * * * 1804 0 0
+
+N 7 1305 * * * * * * * * * * 2408 * * 1297 * * * * * 7
+ 0 * * * * * * 1804 0 0
+
+Q 8 * * * 301 * * * * * * * * * 2408 * * * * * * 8
+ 0 * * * * * * 1804 0 0
+
+R 9 * * * * * * * * * * * * * * 0 * * * * * 9
+ 0 * * * * * * 1804 0 0
+
+K 10 * * * * * * * * 1471 * * * * 646 * * * * * * 10
+ 0 * * * * * * 1804 0 0
+
+K 11 * * * 2106 * * * * 382 * * * * * * * * * * * 11
+ 0 * * * * * * 1804 0 0
+
+R 12 1297 * * * * * * * * * * * * * 754 * * * * * 12
+ 0 * * * * * * 1804 0 0
+
+D 13 2106 * 1471 * * * * 1297 * * * * * * * * * * * * 13
+ 0 * * * * * * 1804 0 0
+
+E 14 * * 2298 825 * * * * * * * * * * * * 2106 * * * 14
+ 0 * * * * * * 1804 0 0
+
+I 15 * * * * * * * 754 * 1297 * * * * * * * * * * 15
+ 0 * * * * * * 1804 0 0
+
+E 16 * * * 0 * * * * * * * * * * * * * * * * 16
+ 0 * * * * * * 1804 0 0
+
+A 17 754 * * * * * 1297 * * * * * * * * * * * * * 17
+ 0 * * * * * * 1804 0 0
+
+G 18 * * * * * 754 * * * * * * * * 1297 * * * * * 18
+ 0 * * * * * * 1804 0 0
+
+K 19 * * * * * * * * 754 * * * * * 1297 * * * * * 19
+ 0 * * * * * * 1804 0 0
+
+S 20 2298 * * 2106 * * * * * * * * * * * 825 * * * * 20
+ 0 * * * * * * 1804 0 0
+
+Y 21 1297 * * * * * * 2106 * * * * * * * * * * * 1471 21
+ 0 * * * * * * 1804 0 0
+
+C 22 * 754 * * 1297 * * * * * * * * * * * * * * * 22
+ 0 * * * * * * 1804 0 0
+
+S 23 1297 * * * * * * * * * * * * * 2106 1471 * * * * 23
+ 0 * * * * * * 1804 0 0
+
+R 24 * * * * * * * * * * * * * * 0 * * * * * 24
+ 0 * * * * * * 1804 0 0
+
+R 25 * * * * * * 1297 * * * * * * * 754 * * * * * 25
+ 0 * * * * * * 1804 0 0
+
+F 26 * * * * 328 * * * * * * * * * * * * * * 2297 26
+ 0 * * * * * * 1804 0 0
+
+G 27 * * * * * 0 * * * * * * * * * * * * * * 27
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+
+F 65 * * * * 1471 * * * * * * * * * * * * * 1297 2106 65
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+G 66 * * * * * 0 * * * * * * * * * * * * * * 66
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+Y 67 * * * * * * * * * * * * * * * * * * * 0 67
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+F 68 * * * * 0 * * * * * * * * * * * * * * * 68
+ 0 * * 0 * * * 1804 0 0
+
+//
+�HHsearch 1.5
+NAME cfe750d45ad9ea874e03be9e47fe8331
+FAM
+FILE cfe750d45ad9ea874e03be9e47fe8331
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:42:40 2013
+LENG 71 match states, 71 columns in multiple alignment
+FILT 140 out of 808 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+99871442479982989999999999658975566554122478965799999999999657663657789
+>Consensus
+mxxxixGDxNxDGxvxxxDxxxxxxxlxgxxxxxxxxxaDvnxdgxixxxDxxxlxxxxlgxxxxxpxxxx
+>cfe750d45ad9ea874e03be9e47fe8331
+MSTKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDTLPYKNG
+>gi|317055743|ref|YP_004104210.1| cellulose 1,4-beta-cellobiosidase [Ruminococcus albus 7]gi|315448012|gb|ADU21576.1| Cellulose 1,4-beta-cellobiosidase [Ruminococcus albus 7]
+--GKDIGKENNGGDAEPAEKSTYDEEKADKNKAENKtkksasdddentdantkenikagSDSKILFIGLIAGAVIILVVATEIFIYKMtkLKMQnqnke-
+-
+>gi|317055204|ref|YP_004103671.1| mannan endo-1,4-beta-mannosidase [Ruminococcus albus 7]gi|315447473|gb|ADU21037.1| Mannan endo-1,4-beta-mannosidase [Ruminococcus albus 7]
+-PQEITYPTNIKANYSQQyhQVQFVWDKVKGAdKYGIAVylaGKWRVQTSN-ITTNSYVTPKNLTPGMTYKVAIA--
+>gi|317055945|ref|YP_004104412.1| fibronectin type III domain-containing protein [Ruminococcus albus 7]gi|315448214|gb|ADU21778.1| Fibronectin type III domain protein [Ruminococcus albus 7]
+--QFVWDKLYGADKYGIAVY-LAGKWRVQ-TTNITTNSyvtpKNLTPGmsyrvAIAARVNGVWSTTEAINNAVTVTVR--
+>gi|317055737|ref|YP_004104204.1| spore coat protein CotH [Ruminococcus albus 7]gi|315448006|gb|ADU21570.1| Spore coat protein CotH [Ruminococcus albus 7]
+-PTNIKVNYNTQyhqiqfvwDKVQGADKYGIAVYLAGKW-RVQ--TSSITTNSFVTPKNLTPGMSYKVAV---------
+>gi|160893736|ref|ZP_02074520.1| hypothetical protein CLOL250_01290 [Clostridium sp. L2-50]gi|156864721|gb|EDO58152.1| hypothetical protein CLOL250_01290 [Clostridium sp. L2-50]
+---IIFGDVTGDGVINALDLLKIQKHIIGASSlkGAFLQAANIKRSGGLSALDLLKVQKFLMGAA--------
+>gi|299136675|ref|ZP_07029858.1| glycoside hydrolase family 2 sugar binding [Acidobacterium sp. MP5ACTX8]gi|298601190|gb|EFI57345.1| glycoside hydrolase family 2 sugar binding [Acidobacterium sp. MP5ACTX8]
+-------------------------MWFATTASDSEstgePMSNTSSRR-----EFLAAAAVAAAGLPAILC---
+>gi|119960824|ref|YP_949129.1| FG-GAP repeat-containing protein [Arthrobacter aurescens TC1]gi|119947683|gb|ABM06594.1| FG-GAP repeat domain protein [Arthrobacter aurescens TC1]
+----------------------MKRSKHGSGrptaalhqrrcsLAYPskcsYRSTRSRAWKAVPLAASASLAAAAIALTG-VP----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 3297 0 0
+
+S 2 * * 4615 * * 5342 * * 5031 * * 2108 1073 * * 2980 4740 4946 * * 2
+ 0 * * 0 * * * 5583 1000 0
+
+T 3 5077 * 5036 3130 * 2858 * * 4542 * * 3761 3386 3224 * 4644 1900 4553 * 5811 3
+ 24 5927 * 1000 1000 * * 7011 1017 0
+
+K 4 3587 * 5880 3870 3782 3715 * 3037 4444 4982 6653 5260 3958 6454 4701 4185 4541 2679 * 3664 4
+ 17 6428 * 1802 488 * * 7320 1016 0
+
+L 5 4660 * 5039 * 6820 5728 7263 1687 4395 2588 4919 5159 6742 6986 6845 7101 4181 2275 * 6009 5
+ 0 * * * * 0 * 7322 0 1000
+
+Y 6 3711 5617 * 6829 6161 * * 3185 2776 2810 6045 7152 4429 * 3338 6016 3800 7402 4349 2538 6
+ 0 * * * * * * 7351 0 0
+
+G 7 4838 * 5193 * * 242 * * * * * 5627 5460 * * * * 5494 * 5227 7
+ 0 * * 1000 1000 * * 7362 1005 0
+
+D 8 * * 321 5610 * * * 5534 4049 * * 3831 5212 * * * * * * * 8
+ 30 * 5610 * * * * 7377 0 0
+
+V 9 2969 6605 * 5597 6060 * * 2682 * 2228 * 7045 * * * 4327 4303 1729 5430 5372 9
+ 0 * * * * * 0 7292 0 1155
+
+N 10 * * 2686 * * * * * * 7124 * 445 * * * * 4021 6329 * 5114 10
+ 0 * * * * * 0 7290 0 1155
+
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+ 0 * * * * * 0 7290 0 1155
+
+D 12 4690 * 563 6119 * 3733 * * 5153 * * 3655 * 5381 * 4496 7388 * * 6289 12
+ 35 5381 * 3000 193 * 0 7304 1117 1155
+
+G 13 4826 * 3883 5858 * 524 * * 5512 * * 4406 * 5585 5429 4774 4851 * * * 13
+ 9 * 7361 * * * 0 7304 0 1155
+
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+ 0 * * * * 2114 379 7306 0 1223
+
+V 15 4439 * * * 4176 5471 * 2030 * 3965 * * * * 7000 * 4709 1213 * 3478 15
+ 0 * * * * 0 * 7304 0 1155
+
+N 16 5607 * 1783 4109 * 4427 * * 5849 6902 * 1790 * 4568 6874 3412 3002 * * * 16
+ 0 * * * * * * 7390 0 0
+
+S 17 3350 * 6412 6259 6213 3554 * 2914 * 4032 3980 * 4729 4805 6260 2397 5217 2402 6796 5651 17
+ 0 * * * * * * 7390 0 0
+
+T 18 1992 * 6940 6203 5138 4318 5651 3820 4510 2862 4782 4080 * 4612 4968 3639 3899 4525 * 5868 18
+ 38 5255 * 1000 1000 * * 7390 1144 0
+
+D 19 * * 293 4196 * * * * * 6342 * * * 4145 * * 4879 5232 * * 19
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+
+A 20 2564 6911 * 7335 3741 * * 3217 3972 1977 6350 * * 7102 6206 5859 5232 2653 * 3637 20
+ 48 7301 5232 2000 415 * * 7390 1000 0
+
+V 21 2447 7506 5917 4751 7137 5708 * 3699 7497 4599 4855 7361 6506 4233 5153 4229 2794 2024 * 5008 21
+ 0 * * * * 0 * 7230 0 1149
+
+A 22 3662 6940 7633 5844 4216 4846 6781 3589 5466 1746 3938 7057 * 5229 4894 * 3738 4261 6393 3097 22
+ 18 6320 * 1585 585 * * 7390 1055 0
+
+L 23 3442 5817 * * 4889 6786 * 2407 5646 1764 2894 * * * * 6812 4736 3274 * 4056 23
+ 62 4577 * 2249 341 * * 7454 1348 0
+
+K 24 2960 6781 4852 5089 7207 4257 6523 6291 2597 4448 4484 3989 * 2770 2795 4886 5894 7279 5181 5534 24
+ 0 * * * * 0 * 7368 0 1155
+
+R 25 4346 7193 3402 4122 * 5993 * * 1900 5780 5115 3397 * 2955 2892 4280 6852 4860 * 6939 25
+ 24 7003 6801 1000 1000 * * 7454 1000 0
+
+Y 26 4519 * 6906 5104 5512 4670 3231 4433 4724 5801 5116 4889 * 6396 6530 4639 7194 4958 3804 1275 26
+ 32 * 5496 * * 0 * 7522 0 1007
+
+V 27 5473 6992 5749 * 4943 5284 * 2202 4816 1453 4638 7112 * * 4857 4705 * 2994 6357 5902 27
+ 40 7286 5599 1000 1000 * 0 7408 1000 1125
+
+L 28 2673 5246 * 7129 5712 6831 4522 3348 4035 1805 5038 4078 5592 6290 6335 4243 5194 3843 * 7044 28
+ 25 6597 7207 666 1436 2610 258 7407 1021 1315
+
+R 29 3804 * 3686 4669 * 1194 * 7262 3709 * 7443 3161 * 4307 4981 4158 6113 6091 * 7234 29
+ 110 * 3769 * * * 0 7413 0 1325
+
+S 30 3770 * 4864 5141 6872 3387 * 3627 2013 3667 6035 3997 3605 6828 5464 4108 4718 4787 6107 6134 30
+ 157 3527 5913 658 1449 1051 950 7165 1612 1954
+
+G 31 4137 6176 4334 3910 5657 3206 * 3643 2972 4378 5738 4298 4171 5734 4573 3705 3225 4849 5310 * 31
+ 351 2599 4291 1561 597 2238 344 7340 2337 1615
+
+I 32 4044 * 3439 3604 6046 4900 7099 3993 3052 5451 7096 4151 3776 4605 6307 3412 3023 5396 * 3800 32
+ 339 2468 5113 905 1101 1147 867 7190 2385 1976
+
+S 33 3154 * 3305 3420 6284 3110 6907 5358 4725 4325 * 3229 3247 7034 4380 3637 3583 6321 * * 33
+ 136 4441 4505 1578 588 1963 428 7272 1422 1848
+
+I 34 3602 * 5202 3107 2921 * * 2007 4670 2892 5471 * 6740 6983 7000 5306 5975 3498 * 4557 34
+ 74 4554 7070 1461 651 2172 362 7249 1267 1992
+
+N 35 3538 6987 3281 5161 6112 5439 * 5522 4511 5025 7134 2770 3529 3264 6091 3449 2634 6849 7038 6233 35
+ 680 1693 3912 2240 343 635 1489 7262 3479 1823
+
+T 36 3653 6946 5339 3973 4373 7141 * 4449 3458 2722 4935 5648 5167 6236 4690 5711 2837 3991 3604 4520 36
+ 183 3073 * 3407 143 933 1070 7275 1885 1774
+
+D 37 3927 * 4099 3251 6132 4439 6225 4062 2219 3925 4984 5043 4275 4375 4960 4819 5213 4419 6824 4484 37
+ 38 5545 7710 1923 442 1142 871 7338 1147 1340
+
+N 38 1550 4882 4932 6561 5917 6845 * 4637 4459 4991 5814 2957 7114 5143 5201 2971 4325 5209 * 5306 38
+ 58 4670 * 2930 203 2391 305 7447 1484 1208
+
+A 39 807 5504 * * 5677 2938 * * 4308 7127 5065 * * * 6341 3377 5740 7273 4841 * 39
+ 9 7345 * 1000 1000 2648 251 7450 1000 1198
+
+D 40 * * 341 * * * * * 5689 * * 3763 * * 4093 5377 6315 * 5480 * 40
+ 0 * * * * * 0 7446 0 1155
+
+L 41 3766 4470 * * 4841 6964 * 2427 * 2544 4442 * * 6315 * 6316 5863 1455 5156 * 41
+ 0 * * * * * 0 7446 0 1155
+
+N 42 * 5308 2522 5156 7217 * 7090 5389 4436 5248 * 1037 * 5204 5329 6366 3833 5393 * 5911 42
+ 18 6344 * 1000 1000 0 * 7446 1042 1155
+
+E 43 3612 6423 4188 4376 5723 2034 7446 5675 3520 5857 4972 4398 4981 3452 4431 4682 4063 7037 7312 4342 43
+ 8 * 7513 * * * * 7531 0 0
+
+D 44 * * 786 7140 * 4873 6863 4964 * * * 2629 5631 * 5703 3435 * 4942 6342 * 44
+ 77 4667 6343 1938 436 0 * 7531 1318 1000
+
+G 45 3482 * 5077 6447 * 703 * * 5018 6563 * 3366 6359 * 5312 4274 5170 * * * 45
+ 78 6129 4710 0 * * 0 7499 1075 1070
+
+R 46 3617 * 4688 3981 4071 4155 * 4154 2620 4480 6834 6281 5373 4934 4120 3253 3822 3076 * 7167 46
+ 75 5114 5538 0 * 1306 748 7270 1237 1454
+
+V 47 4221 7028 * * 4624 * * 1190 * 3688 * * 5441 * 6318 6559 5542 1668 * * 47
+ 18 6315 * 2807 222 * 0 7344 1042 1465
+
+N 48 3810 * 1461 6560 * * * * * 7215 * 1847 5292 6766 6901 4853 2377 * * * 48
+ 18 * 6318 * * * 0 7344 0 1465
+
+S 49 2917 * 6296 5896 * 3620 * 2728 5762 5141 4054 4387 4732 7078 4538 3162 3657 2619 6770 * 49
+ 0 * * 1585 585 872 1141 7310 1155 1613
+
+T 50 2466 * 4686 4446 3481 4296 * 3293 3439 3513 5312 4168 * 6071 5143 4413 3978 4442 * 4986 50
+ 0 * * * * 856 1160 7430 0 1244
+
+D 51 4888 * 342 5754 * * * * 6855 6359 * 4310 * * * 5258 5674 4575 * * 51
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+
+L 52 3314 6428 * 5846 3124 5204 * 3368 6822 1788 6021 5483 * * 5488 3926 * 2894 * 3779 52
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+
+G 53 2644 7240 5608 5803 * 4615 * 2886 5101 3983 5746 6338 5674 6520 6194 4065 2614 2288 * 5411 53
+ 0 * * * * * 0 7499 0 1070
+
+I 54 3170 * 7216 4182 5300 7396 6576 3388 3738 2104 4969 * 5424 4296 5723 4687 3831 4900 4862 3640 54
+ 0 * * * * * 0 7499 0 1070
+
+L 55 6370 * * * 5996 5424 7251 1796 * 1398 3425 * 4366 6844 * 5204 7410 3450 * * 55
+ 39 5224 * 1357 714 * 0 7499 1219 1070
+
+K 56 3152 6948 7356 5278 7223 7283 6775 4309 2436 4913 4379 5856 * 2629 2712 4394 3971 4693 5483 7674 56
+ 0 * * * * * 0 7499 0 1070
+
+R 57 3385 * 3763 6209 7115 5407 * * 1838 5369 7496 3584 * 3288 2541 3920 4234 * * * 57
+ 0 * * * * * 0 7496 0 1070
+
+Y 58 4643 * 5960 4603 2987 6354 5549 3639 4893 2906 4558 6401 * 5843 5672 5679 5014 5364 * 1601 58
+ 0 * * * * * 0 7498 0 1070
+
+I 59 3469 6287 7382 4597 5942 * * 1993 4337 1890 6118 7071 * 7012 * 7488 4903 2787 * 4342 59
+ 0 * * * * * 0 7503 0 1070
+
+L 60 3436 7040 4916 * 6658 7135 7185 2800 5057 1353 4413 7069 5207 7046 6833 5105 5541 3148 7145 6678 60
+ 7 * 7646 * * * 0 7494 0 1070
+
+K 61 3900 6647 5425 5356 4525 1112 4326 * 3315 * * 3451 * 7262 4306 5518 6278 4807 * * 61
+ 30 7455 6097 0 * 0 * 7493 1000 1121
+
+E 62 4378 6897 6189 4257 6042 5060 * 3082 3405 3149 3717 4277 5325 5222 3622 4298 4737 2824 7019 6773 62
+ 23 5971 * 1070 933 0 * 7552 1044 1056
+
+I 63 3057 5558 4951 4486 * 6657 * 1675 5557 4051 5323 * * 6702 5016 6467 2885 3757 * 3460 63
+ 15 * 6621 * * * 0 7372 0 1000
+
+D 64 3812 * 3321 3580 * 4682 6451 5594 2427 6354 * 4893 4040 5524 4942 3036 3400 4050 * 4316 64
+ 113 4611 4863 1000 1000 1076 928 7321 1149 1049
+
+T 65 4230 * 3256 2972 6238 * 4662 6078 2432 4607 4927 * * 6246 4999 2321 2908 6634 * * 65
+ 165 3206 * 1000 1000 0 * 7104 1461 1275
+
+L 66 6049 * * 5230 1443 * * 4138 * 1378 * * * * * * 6325 2987 * 6621 66
+ 23 5958 * 2322 322 * * 7174 1009 0
+
+P 67 3868 * 5741 5976 * 4581 * * 3966 5368 * 5138 794 * * 4581 3329 5606 * * 67
+ 0 * * * * * * 7164 0 0
+
+Y 68 3499 5004 4916 4271 * 3761 * 3366 2745 5814 4661 5620 4892 * * 4918 5792 1895 * 4497 68
+ 55 4744 * 1354 716 * * 6944 1040 0
+
+K 69 3676 * * 2946 * 3413 * * 2230 * * 3963 * 2382 3508 3573 4130 * * * 69
+ 375 2128 * 2322 322 * * 6560 1103 0
+
+N 70 * * * * * 1661 * * * * * 885 * * * * 2812 * * * 70
+ 0 * * * * * * 2919 0 0
+
+G 71 * * * * * 0 * * * * * * * * * * * * * * 71
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME d3011fec8513a3e2267bf4e15e08704b
+FAM
+FILE d3011fec8513a3e2267bf4e15e08704b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:05:26 2013
+LENG 166 match states, 166 columns in multiple alignment
+FILT 117 out of 1051 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCHHHHCEEEEEEEEECCCCCHHCCCCCEEEEEEEEEECCCEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEEEECCEEEEEEECC
+CCCEEEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9888888875788896893758899999528962000387047899999977996999999710982999999999758895899985084899999869
+998999999645899567899999789999999999999999984999899699887785877899
+>Consensus
+cxxxxxxxxxxxxfdxxkxxGxWyxiaxaxxxxxxxxxxxxxxxxxxxxxxxxxxlxvxxxxxxxxxcxxxxxxxxxxxxxgxxxxxxxgxxxxxvlxtD
+YxxyaixxxxxxxxxxxxxxxxlxsRxxxxxxxxxxxfxxxxxxxglxxxxixxxxxxxxCxxxxx
+>d3011fec8513a3e2267bf4e15e08704b
+CVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTD
+YDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE
+>gi|55958592|emb|CAI17198.1| progestagen-associated endometrial protein [Homo sapiens]
+----MDIPQTKQ----------------------DLElPKAPLRVHITSLLPTPEdNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINCKASGAPQL--
+------SWKPQGPRTDPASS-T----ARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEE------
+>gi|291241284|ref|XP_002740541.1| PREDICTED: apolipoprotein D-like [Saccoglossus kowalevskii]
+------TVVVQPDFNVDKYTGSWYEIE-----RFPASFESGLKCNNATYWLKQDgTIGVINSgIdIVTGERTSVEGNAWVPdpNVPAKLKVKFRWwvpAG
+DYWVLRTDYNTYSVVYSCDdFMFgFIKMEFAWILSRDRILNTGTLTDIKRDIQDRGIDISNFLS-TDQIGCDA---
+>gi|254468024|ref|ZP_05081430.1| lipocalin family protein [beta proteobacterium KB13]gi|207086834|gb|EDZ64117.1| lipocalin family protein [beta proteobacterium KB13]
+SGCAtngLPKIEPVEKISLDNFMGDWYVLAHIPA---LIEKN-AFNA-VESYSFNSaDqVIETTFTfNKGAldGPEKIYKPKGFVIPgtNNAVWGMQfiw
+piKAQYVIAYI-DEGY-ENTIVARDK----RD--YLWFMSRTTDLPTEKKQWIYKKTSELGYDGDMLRFVPHN--------
+>gi|285019342|ref|YP_003377053.1| lipocalin precursor [Xanthomonas albilineans GPE PC73]gi|283474560|emb|CBA17061.1| putative lipocalin precursor protein [Xanthomonas albilineans]
+PASTvrakspgPEQEAARPPIDLQRFMGRWYVIA-HIPY--FA-ERGHVAS-SDEYTLKDnGKI--avRY-Q-YRKGf-DEPLKEITSRATvnEGTGN-r
+RwttwffavLPTK-yRILEVAPDY-SWALIDYP------GRDLAWVFARSPDMSHKQYRELVDKMDhKYGIN----tdklLR------------
+>gi|47226724|emb|CAG07883.1| unnamed protein product [Tetraodon nigroviridis]
+----DDMVKPYIPLDPKAVFGKWVYVMGAGDPDPYHRALGSIKSSWVELSPTSdVqTVTLRWGDYLFNQCALGEVNATLSG----TTVTFQKNlseHRGH
+LLQTRANS--LLWTDSFrNVDVTGRFVMQFTRTGTTDPELVRLFKEQIACLHFPEN-FHsYDGTTELCPEASP
+>gi|260893984|emb|CAP10680.1| lipocalin homologue [Deinagkistrodon acutus]
+CVVQANEKKPFQNFDCSKMARNWILRVIVTNCSHFENMIRGIKACPVSFVKKSqENMEMIMDMFTPQGCQIIKVNLTW--VNGAIVATcGDGvEKTVEDV
+RINKNT--M-YTSaRVRGKEQCKVATLAAKDIADIQPDLEDFTRFVNGVGLEGKKIYVLPTEDICPRS--
+>gi|270046182|dbj|BAI50821.1| unnamed protein product [Triatoma dimidiata]
+------NPEPLDGFSASNfFSGTWYVSHVK---------SVTSPTVCQTFTTSqEDnKLITEYVFGKGGkdiivRCEA-----EK-KKNILLTFSckNSQ
+CrtflTVFTVMDTNYDNYAEFYKCVIfTSGSKA-DIYLVIKRESGNEQIPEK----AKSLNLQK-----------------
+>gi|270046234|dbj|BAI50847.1| unnamed protein product [Triatoma dimidiata]
+------GYKPMENFDSTRyLQITtpLYSTQA-KPKSN----YTVCREFRSIKKsgdkvdtNIHGYYKDrgkiFNYE---LLCSTTWE---S-FNKGQYLS
+VcevlKDTdvegplissfEQHMSVIHTDYDSYAILYiCISDESGIEENVVVLE-KDPGASNE---AVTTALRNNDMDLTEFF-PWNYAYCQN---
+>gi|156602033|gb|ABU86907.1| Apom [Ornithorhynchus anatinus]
+----------------RTYLGYWHFIAGSAPTPDPLATFDPVDNILFHLVPGsTPlELYLRASIrMKNGLCVPREWTYLLAK--GTTNLRIEGRpnMKTE
+LFSAPCAESIIL-K---ETGQDYERFLMYSRSPAPPARCVNDFQALVSCWNF-T-LLQTPRQQDACMLT--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+E 112 4890 * 4113 3398 4215 5125 4941 5433 3327 4907 6385 4061 * 4950 4119 3258 3151 2989 * 4734 112
+ 571 1668 6380 707 1368 3011 191 9137 4837 5508
+
+K 113 3672 * 3573 3520 4053 5466 6511 5568 3527 4130 4813 3667 3519 6392 3630 3243 4748 6350 5492 5638 113
+ 155 3929 4790 812 1217 975 1026 9295 1710 5396
+
+D 114 3223 * 2982 3628 5590 3337 4898 6630 3398 5546 * 2876 5508 5053 4321 3885 3934 6654 * 5353 114
+ 160 4627 3959 378 2116 3916 99 9547 1493 4067
+
+G 115 6347 6544 3090 6573 5476 1593 5048 4938 3557 6476 * 3488 3849 6515 4877 3345 5431 * 6507 * 115
+ 130 3534 * 1025 975 445 1914 9498 2501 4590
+
+E 116 5921 * 5199 3523 4197 3354 4984 4272 2865 4317 * 6569 4256 3698 2934 4393 4585 4521 * 4551 116
+ 107 5816 4226 0 * 747 1306 9729 1166 2009
+
+T 117 4790 6984 3998 3262 6776 5563 3775 6443 2882 5373 * 3296 4396 3898 4771 2818 3612 4722 * * 117
+ 75 * 4304 * * 906 1100 9707 0 2226
+
+F 118 4779 4930 3914 4836 3151 4729 4185 4283 5790 4409 4367 5339 * 5908 3624 2946 3640 5203 * 3327 118
+ 252 5783 2817 1343 723 1335 728 9673 1167 2452
+
+Q 119 5678 6382 3360 3284 6636 * 4643 4806 3440 3386 6762 2903 5522 3229 3716 3976 4521 5448 * 5840 119
+ 0 * * * * 688 1398 9620 0 4135
+
+L 120 5851 6664 4238 5544 3670 5668 5068 4510 5110 3448 3508 4521 * 5688 4662 3444 4432 2814 4958 3280 120
+ 0 * * * * 0 * 9638 0 2245
+
+M 121 2293 6707 5353 * 3929 4384 * 4873 6582 2090 4148 4972 * * * 5258 4805 2403 5644 6693 121
+ 0 * * * * * * 9709 0 0
+
+G 122 5125 4844 * 4153 3365 5198 6125 4339 3190 4346 6975 7107 * 5272 5874 4727 4159 4283 1778 4690 122
+ 0 * * * * * * 9709 0 0
+
+L 123 5619 6661 * * 4513 * * 2064 * 1082 5666 * 6516 5338 * * * 3035 * 4755 123
+ 15 6632 * 0 * * * 9709 1025 0
+
+Y 124 5586 7046 * 5600 2812 * 4843 4946 * 1485 4010 6520 * 5871 6699 5890 5549 4637 6733 2347 124
+ 125 5338 4106 0 * * * 9709 1351 0
+
+G 125 2024 6614 * 6604 * 3067 5583 * 6410 4219 * 5555 * * 6878 1496 3178 4913 * * 125
+ 12 * 6870 0 * 0 * 9569 1044 2019
+
+R 126 * * 6540 * * * * * 3206 * * 5983 5652 * 302 6228 6591 * * 6579 126
+ 0 * * * * * 0 9716 0 1019
+
+E 127 5214 * 2679 3950 6681 4077 * * 3622 * * 4079 5816 4282 3749 2393 2389 5796 * * 127
+ 11 * 6980 * * * 0 9716 0 1019
+
+P 128 5123 * 5171 5183 6632 5464 * 5486 3982 3325 6522 5706 1747 4800 2523 3994 4023 5804 5789 * 128
+ 40 * 5176 1000 1000 1127 883 9700 1019 1185
+
+D 129 4592 * 3189 2470 * 5332 4716 5302 3942 3537 5788 4782 5986 3528 6893 3839 2907 4049 * * 129
+ 68 6923 4735 0 * 1047 955 9663 1431 1572
+
+L 130 3524 * 4279 4985 5808 4532 6868 3582 * 1856 4410 5490 2981 * 6919 5655 4370 2964 * * 130
+ 15 * 6624 * * 221 2816 9601 0 2147
+
+S 131 4759 * 2823 2668 * 6586 * 5568 5189 7002 * 3761 3349 5459 5749 1945 3153 * * 6350 131
+ 28 5724 * 1000 1000 0 * 9697 1383 1192
+
+S 132 3716 * 2630 2720 6632 4032 6789 * 4024 5547 6900 4315 2712 2918 6572 5339 4289 5832 * * 132
+ 0 * * * * * * 9725 0 0
+
+D 133 2658 * 2293 2296 * 4276 7030 6809 3369 * 6875 5721 4207 3893 6818 3903 5315 6626 * 6806 133
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+
+I 134 2134 6522 4845 4339 5228 5560 6203 3255 5839 3246 5051 6836 6851 4057 6663 5121 3768 2867 6477 5644 134
+ 81 4202 * 894 1115 * 0 9587 1769 1997
+
+K 135 5689 6935 6469 6595 4522 * * 2755 2878 2050 3115 5732 4892 * 4155 * 5671 4412 5539 3848 135
+ 12 * 6884 * * * 0 9587 0 1997
+
+E 136 2740 * 3635 1791 6714 5028 5752 * 2859 * * 4112 6910 3814 4434 4711 4811 6835 5777 * 136
+ 13 * 6835 * * 440 1926 9583 0 2148
+
+R 137 3229 * 3978 2663 6543 4867 5179 5806 2331 5248 4424 5145 * 3807 2887 5841 5615 * * 4753 137
+ 0 * * 0 * 488 1801 9693 1240 1404
+
+F 138 2812 4985 * * 1231 * * 3828 * 2952 5282 * * * * * 6714 3356 * 3888 138
+ 12 * 6971 * * * 0 9723 0 1000
+
+A 139 4506 6565 5320 3033 4316 * 4733 6734 2864 2831 4719 6637 * 4236 3414 5651 3640 3573 * 4505 139
+ 0 * * 0 * 891 1118 9706 1019 1188
+
+Q 140 3069 5740 3379 2873 * 4988 * * 2468 6923 4787 4237 * 4281 4132 3024 4238 * * 4821 140
+ 0 * * * * * 0 9699 0 1000
+
+L 141 3215 * 7027 6846 3141 * 6560 3778 3423 2364 * * * 4372 3005 6949 4934 3317 5775 4076 141
+ 14 6677 * 0 * * 0 9699 1044 1000
+
+C 142 2142 4038 * * 4089 5283 * 3759 * 1975 5631 * * * * 3979 3943 2808 * 6879 142
+ 21 7214 6969 0 * * 0 9699 1000 1000
+
+E 143 4046 6551 3814 2781 * 5095 * 5177 2478 4499 * 4934 4744 3994 2794 3586 4538 6853 6571 6793 143
+ 25 5852 * 573 1609 * 0 9682 1131 1188
+
+E 144 2773 4183 3536 3004 6908 4432 5229 5732 2906 5218 * 4370 6728 4507 3684 3253 4902 6737 * * 144
+ 0 * * 1000 1000 * 0 9682 1019 1188
+
+H 145 4809 * * 5012 4558 6908 5149 4138 4317 1780 4253 3860 6798 3390 4150 * 5246 4380 * 3323 145
+ 24 5943 * 1000 1000 * 0 9682 1133 1188
+
+G 146 6835 5209 4802 5678 * 688 5649 5180 4525 * * 3788 5291 5119 4842 5940 6598 6798 * * 146
+ 28 5714 * 433 1947 891 1118 9682 1381 1188
+
+I 147 * * 5883 * 2481 * * 2414 * 1580 4329 * * * 6734 6791 * 3213 * 3240 147
+ 12 * 6907 * * * 0 9699 0 1000
+
+L 148 6604 * 2165 3537 * 5752 4544 * 4192 4029 * 4378 3234 4723 4829 2587 3979 5145 * 5820 148
+ 61 * 4592 * * * 0 9682 0 1212
+
+R 149 6514 * 3549 2741 5105 6305 * 4255 4309 3014 4729 4779 3811 6036 4638 3424 3215 3971 * 5620 149
+ 32 * 5489 * * 2943 201 9617 0 2064
+
+E 150 4139 * 2566 2586 5847 4244 5291 * 3848 5537 * 4318 5395 4086 5636 2601 3766 * 5656 6625 150
+ 92 * 4018 * * 1947 433 9532 0 2264
+
+N 151 4952 * 3146 4730 4586 6522 4190 5481 2481 5089 5010 2785 6328 3703 3267 4492 6720 6611 * 4459 151
+ 0 * * 2585 263 1279 766 9470 1019 2878
+
+I 152 6607 * * * 2833 * 6457 1852 * 1870 4131 * * 5683 * 6875 5621 2747 6834 5356 152
+ 30 6580 6669 2149 369 1196 828 9564 1815 2090
+
+I 153 5708 * * 3764 3790 * 5413 2635 4596 3714 6368 5646 * 4359 3365 4248 4060 2323 5658 5442 153
+ 246 * 2674 0 * 350 2216 9581 1044 1717
+
+D 154 * * 3564 5557 2680 * 3971 4202 4472 3954 4600 3810 5370 4939 4068 5012 3838 3902 4594 3789 154
+ 32 6374 6687 0 * 97 3942 9290 1000 3482
+
+L 155 5023 * 4990 6691 4366 * * 3529 4434 2344 6141 6399 2591 5201 5782 4665 2901 3160 6826 5767 155
+ 89 5758 4607 0 * 1217 811 9600 1131 1168
+
+S 156 4640 * 4897 3882 4777 5284 6644 5376 5133 6485 6490 4093 2368 3983 3363 3326 3174 4655 6021 4911 156
+ 19 6283 * 0 * 338 2260 9509 1016 1743
+
+N 157 * * 4288 4253 6447 * 4114 5981 2852 6499 * 3019 4686 2096 3872 3152 4153 5667 * 6789 157
+ 16 6461 * 0 * * 0 9580 1013 1019
+
+A 158 4737 * 3255 3863 * 4063 5747 6521 3883 5670 6510 4554 3883 2856 4185 3695 2816 4569 * 4778 158
+ 116 3940 6386 699 1381 1023 977 9473 1916 1210
+
+N 159 3353 * 1737 2226 5460 3194 * 5484 4371 6545 6306 4279 * 6289 4403 6352 6435 5211 * * 159
+ 51 6285 5501 0 * 1744 511 9416 1000 1406
+
+R 160 3066 6417 3512 3111 5298 5186 5956 5069 4172 4855 6098 4255 4271 3280 3792 4843 3286 * * 4461 160
+ 0 * * * * 0 * 9159 0 1518
+
+C 161 * 114 * 5982 * * * * * * * * 6019 6037 * * * 6150 6009 * 161
+ 71 5019 5842 1601 577 * * 9092 1191 0
+
+L 162 3513 * 3891 4439 * 4714 5765 5006 4438 4072 * 4511 2120 3358 * 3427 4019 3918 * 6231 162
+ 0 * * * * * 0 8925 0 1057
+
+Q 163 3753 * 3876 3035 4505 3708 3135 5536 * 5404 5509 3482 3161 3753 4481 4659 4670 5785 * 5886 163
+ 0 * * * * * 0 8504 0 1057
+
+A 164 1227 * 2760 2280 * * * * * 4604 * * * * * 2489 * * * * 164
+ 154 3303 * 0 * 0 * 6896 1021 1057
+
+R 165 * * 2440 * * 3437 * * 3041 * * * * * 732 * * * * * 165
+ 213 2864 * 0 * * * 4798 1000 0
+
+E 166 2606 * * 2491 * 2735 * * * * * * 2785 1463 * * * * * * 166
+ 0 * * 0 * * * 3537 0 0
+
+//
+�HHsearch 1.5
+NAME d330d1598fd712b741ae1a07a1797d37
+FAM
+FILE d330d1598fd712b741ae1a07a1797d37
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:02:53 2013
+LENG 192 match states, 192 columns in multiple alignment
+FILT 167 out of 1196 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCHHHHH
+HHHCCCCCEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEC
+>ss_conf PSIPRED confidence values
+9986099999999588847379977876878999999997178754557879984008765230147889997999958897655789969989999999
+97478997999887999999974899789999999533366656324389983447998888611234555543442468921899999979
+>Consensus
+xxxxxxxxlixAxsldGxIgxxgxlpWxxxxdxxxfxxxxxxxxxxxxxxxvvmGRxTyexxxxxxxpxxxrxxiVvSxxxxxxxxxxxxxxxxxxxxxi
+xxxxxxxxixViGGxxlxxxxlxxxlvDelxltiipxxxxxxxxGdxxfpxxxxxxxlxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+>d330d1598fd712b741ae1a07a1797d37
+MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSL
+NLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
+>gi|330723554|gb|AEC45924.1| dihydrofolate reductase [Mycoplasma hyorhinis MCLD]
+-------MIISilAMGKNNLIGKGDDLPWYVKEDFDFYREQTK-------HHDILVGKNTFFTLPKS---LQKWSKIYIVSddkNFN-Y-ENENVKTINN
+FSNLIKEyQNHpSKHLFVSGGYTLYKSII--NKCDQLIISFIKGE----HSGDIFLNElKWEKFE-----------------------------------
+>gi|308177537|ref|YP_003916943.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]gi|307745000|emb|CBT75972.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
+-------IFDAAVSLNGYLADEnHGLQWLfdvpGAQEPDP-DLL------PKNVGVHVEGANTYKWLIDneqlmenpHKWQEyyPGVTTYVFTSRDLPIP
+DGADVRLVNgPVAKFLPEIrgtAGLKNIWVLGGGELLGQFLDAGAIDILALTIAPVA----LaRGTELLPRniGSERLELVQAHK---------------
+--------------
+>gi|298245066|ref|ZP_06968872.1| bifunctional deaminase-reductase domain protein [Ktedonobacter racemifer DSM 44963]gi|297552547|gb|EFH86412.1| bifunctional deaminase-reductase domain protein [Ktedonobacter racemifer DSM 44963]
+---------LEFVTLDGVIQaPGgPEEDtsggfayggWvapYDDDVAGTVMDKQMNL-----PFDLLLGRKTFEIWAP-FWPqhadgwpgVMSATKYVAS
+NSMTS-SEWQPSVFLgGDIAEKVSKLkhQPGPDLHVYGSANLLQTLMKHDLVDAFWLKIFPLT----LgSGKRLFTDgTiPAAFKVTESQV---------
+--------------------
+>gi|300783227|ref|YP_003763518.1| hypothetical protein AMED_1302 [Amycolatopsis mediterranei U32]gi|299792741|gb|ADJ43116.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]gi|340524608|gb|AEK39813.1| hypothetical protein RAM_06605 [Amycolatopsis mediterranei S699]
+-------VASFCMSLDGFVaRPDDSvgplFDWYqagdvevpmagypitfrvAPASAEYLSTFLDSVR----HSAFVCGRRVFEYTHGwGGRPPGGGAAFV
+VTHRPPPaGWPAGNlapFTFCADVTSAIEQAKaaGDGTV-GVSGPSIAQQCLRLGLLDEVRIDLVPVL----LgTGVRYFE-------------------
+-----------------------
+>gi|281421474|ref|ZP_06252473.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]gi|281404546|gb|EFB35226.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]
+-HQRPYIILKWAQTANGFLDNGGR-GMAISSP---FTKMLSHK-LRAENDAILIGRVTDERDhSQlnvRDWSGKDPMRLVIDRHHPCFEGLDFsRGKTEV
+LQQIMQYlyNNKVQSLIVEGGAITHQAFLDAGLWDEIRAETllstsVENS----VTSGTPAPMLPHNVRLISH---------------------------
+----
+>gi|284052809|ref|ZP_06383019.1| riboflavin-specific deaminase [Arthrospira platensis str. Paraca]gi|291566856|dbj|BAI89128.1| putative riboflavin-specific deaminase [Arthrospira platensis NIES-39]
+--TRPHTTVILAMSADGKIADLMRSPARfgSNADIIHLERQIAQ------ADAVLFGNGTLAAYGTVLrvsstELLGdrekngkppQPVQIVCSASGKIN
+ptlkffqQPVPKWLLTTFlggqpwkrfsdhFDQVIvaddsngvitwsealQQlrDRDIQRLAVLGGGQLVASLMAHHAIDEFHLTVCP------------
+--------------------------------------------
+>gi|84494757|ref|ZP_00993876.1| hypothetical protein JNB_08164 [Janibacter sp. HTCC2649]gi|84384250|gb|EAQ00130.1| hypothetical protein JNB_08164 [Janibacter sp. HTCC2649]
+--GRLRYGVIISL--DGYArDASGSFAWARPDHdLhSFINEKERD------VRTYIYGRGLWETMR--YWQnpprGEvnapehdefatiwqGADKVIVST
+TLE-PPTEPRTQLWDtLDVDRLAALVgdASTDV-SIGGPTLAADALRAGLVDEITAYVMPHV----AgGGLPWLPD------------------------
+-----------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 2633 0 0
+
+L 2 * * * * * * 2564 * * 2667 2839 * * * * 1971 2727 2970 * * 2
+ 0 * * * * * * 3841 0 0
+
+K 3 * 4093 3943 4205 * 2609 * * 3166 4222 * * * 3790 2765 2578 3234 * * * 3
+ 0 * * * * * * 5567 0 0
+
+P 4 2891 * 4367 * 4502 4209 4440 * * * * 4433 2100 * 1742 4620 4231 * * * 4
+ 0 * * * * * * 5794 0 0
+
+N 5 * * * 4790 * 4539 3659 4562 3506 2826 * 3651 1860 3603 * * 4301 3603 * * 5
+ 204 4301 3619 1585 585 * * 5990 1026 0
+
+V 6 * * * 4578 3006 * 3405 3024 4685 3668 * * * 3532 4442 3555 3346 3010 * 4088 6
+ 0 * * * * 0 * 5970 0 1107
+
+A 7 4778 5380 5536 * 6059 * * 2219 5900 1989 6517 5967 * 5618 * 3838 3625 3025 * 3346 7
+ 20 6181 * 1000 1000 * * 7106 1049 0
+
+I 8 5189 6396 * 6448 6354 4397 5925 2173 3159 3983 * 4701 * * 4043 2990 2711 3779 * 5292 8
+ 104 5331 4481 0 * * * 7623 1110 0
+
+I 9 3148 5456 * * 4575 6760 * 2730 * 1437 4573 * * 6160 * 5665 5080 3277 * 3561 9
+ 15 6560 * 1000 1000 0 * 8033 1015 1253
+
+V 10 6980 6922 5041 * 3824 6986 4705 1588 5612 4982 4927 4130 * 5451 * 4806 5239 2704 5185 3384 10
+ 0 * * * * * * 8309 0 0
+
+A 11 2229 * 7147 5251 4342 6018 * 3300 * 3377 4022 5657 * 5898 * 7254 5245 1853 4143 5247 11
+ 32 6118 7006 621 1516 * * 8309 1109 0
+
+A 12 635 4762 6224 * 4043 5308 5841 6945 * 7372 6816 4617 7031 7334 * 4033 4991 4954 * * 12
+ 0 * * * * * 0 8303 0 1034
+
+L 13 3119 5667 * 5394 6635 6552 * 2692 5768 3621 3090 * * 4436 7223 5397 3233 2076 * 5124 13
+ 43 * 5077 0 * 0 * 8357 1034 1034
+
+K 14 3285 6057 2743 * * 4502 * * 7239 6108 * 6180 * 7371 7131 1233 2282 6657 * * 14
+ 55 5282 6405 3881 101 * 0 8365 1261 1206
+
+P 15 3285 * 4366 3663 7068 6597 * 4529 4298 1385 7164 5463 4785 5284 4322 4437 * 3517 * * 15
+ 37 5316 * 498 1777 0 * 8353 1329 1322
+
+A 16 5247 * 965 6492 * 5317 5096 * 4595 * * 1901 * 5588 5130 5909 7171 7181 * 7151 16
+ 30 5977 7644 945 1057 * * 8426 1087 0
+
+L 17 * * 7783 6838 4464 605 5387 6637 6693 4502 6156 3525 * 5544 4326 7142 * * 6381 7633 17
+ 10 7168 * 553 1652 0 * 8427 1043 1000
+
+G 18 3240 5257 * 5194 2380 3008 5488 4717 4415 3848 7416 6493 * 6550 6742 7075 7253 3086 7495 2528 18
+ 16 * 6493 * * * * 8424 0 0
+
+I 19 4470 5400 * * 3620 7243 6222 749 * 3451 5571 * * * * * 5559 3400 * 7266 19
+ 212 2873 * 290 2458 * 0 8442 2077 1032
+
+G 20 2119 * 3414 4397 * 1068 * * * 5957 * * 6858 5994 7025 4018 4584 * * * 20
+ 212 2940 7229 728 1335 * 0 8442 2089 1032
+
+Y 21 3955 7429 3597 5994 5035 4761 4207 5483 2925 3665 * 4181 2775 4374 3412 4674 4966 5963 * 4432 21
+ 95 3971 * 453 1891 * 0 8388 1472 1181
+
+K 22 3727 * 2380 4043 * 2940 5182 7447 3909 5589 6352 2451 4864 4900 4524 4663 4344 5796 7043 * 22
+ 136 3704 6228 0 * * 0 8388 1584 1181
+
+G 23 5111 * 3020 5222 * 1251 4473 6887 5558 * 5878 2561 4753 4694 7023 5154 6788 7157 * 6368 23
+ 83 5651 4799 1053 949 2601 260 8382 1100 1288
+
+K 24 4745 * 2561 3413 7003 2819 * 7187 2714 * * 4228 5652 4059 3870 3021 4917 6012 5864 * 24
+ 170 3456 5663 2437 294 1896 451 8335 1644 1519
+
+M 25 7491 * 5096 5378 4188 4860 5431 2989 5670 1414 2993 5419 6137 7324 * 5522 4842 4045 * 5556 25
+ 0 * * * * 281 2500 8328 0 1533
+
+P 26 3986 * 2546 5468 6700 5029 * 6706 5590 3764 * 7103 1243 5103 5470 3681 4899 7445 * * 26
+ 170 3869 4551 1862 464 0 * 8492 1534 1038
+
+W 27 5486 7205 * * 3420 * 6861 * * 4933 4885 * 6688 5773 * 6509 * 5131 508 4986 27
+ 225 3048 5421 796 1237 * 0 8429 1943 1300
+
+R 28 4314 7236 6209 5201 4448 4037 2762 5089 4076 2718 4611 4928 4357 4466 3464 3804 6327 4980 * 4904 28
+ 607 1738 4515 1518 620 0 * 8367 3465 1716
+
+L 29 4780 5127 4604 4088 3250 5120 5749 2949 5823 2275 4846 4898 5210 6068 * 3533 5639 4149 5594 4831 29
+ 112 4310 5381 1719 523 650 1463 8466 1570 1291
+
+R 30 4339 * 2908 3628 7018 5022 * 5858 2663 6179 7270 4421 1785 5456 4604 4241 5151 5591 * * 30
+ 104 4157 6180 1024 976 1585 585 8434 1506 1284
+
+K 31 3016 7141 2541 1708 * 3576 6985 * 3979 * * 5541 5226 4256 6663 4207 4534 5135 * * 31
+ 94 4171 7011 2054 398 2742 234 8434 1385 1311
+
+E 32 4799 * 1024 2006 7192 5505 5622 7120 7235 5332 * 5995 4428 6542 * 5603 4871 6961 * * 32
+ 124 4050 5501 1047 955 2705 240 8435 1508 1312
+
+I 33 3778 6151 6203 7432 3458 4428 5369 4733 4748 2032 2682 * 6092 4760 5336 4858 5094 3650 5621 5896 33
+ 73 4334 * 1386 696 2321 322 8380 1496 1451
+
+R 34 2577 * 3513 3471 6086 3694 4710 4933 3149 4811 6129 5009 5492 3220 3929 4436 4576 6101 * * 34
+ 37 6035 6625 602 1552 * 0 8408 1060 1348
+
+Y 35 4294 * 4795 4536 2525 5632 2694 7662 5284 5045 5721 4494 7162 4636 3500 * 5284 4625 4720 2667 35
+ 69 6380 4859 0 * 273 2537 8412 1034 1439
+
+F 36 7080 6633 7025 7225 1045 6368 5160 4462 6970 3296 5388 5657 * * 7194 7290 5108 4255 5330 2997 36
+ 62 4570 * 1998 416 771 1272 8486 1300 1304
+
+K 37 3429 * 5367 3435 5560 7233 7442 4342 2401 3879 4763 7335 6206 4859 2706 3866 4306 4489 6700 4934 37
+ 53 5101 7130 1894 452 * 0 8484 1234 1086
+
+D 38 3114 7509 3029 2597 5202 5379 5591 7206 3436 5502 * 3588 * 3212 4003 4474 4026 5131 * 6692 38
+ 19 6284 * 0 * * 0 8474 1047 1146
+
+V 39 3960 * 4725 3840 3744 7010 5266 3506 4791 2260 4481 5464 6289 4088 4118 6131 3257 4599 * 5059 39
+ 102 7451 4002 1000 1000 1694 533 8474 1000 1146
+
+T 40 4994 7312 5039 5127 4623 7360 * 3485 5319 3281 3887 7022 * 5136 5127 4681 1484 4205 6056 4596 40
+ 45 * 5028 * * 2002 414 8443 0 1582
+
+T 41 2941 * 3984 3808 * 6895 6005 4646 3905 2730 4116 5338 * 4535 5161 3836 2633 5847 7015 4512 41
+ 253 7335 2695 2585 263 * 0 8435 1045 1658
+
+R 42 3720 6186 5202 3816 5492 1997 5122 * 4434 5012 * 2638 * 4230 3410 3672 4713 6821 * * 42
+ 814 * 1213 * * * 0 8224 0 2943
+
+T 43 2645 * 5058 5183 4338 6242 3895 4355 3888 4069 * 3808 5243 4205 4218 4368 2627 4041 * * 43
+ 749 4382 1486 2795 224 * 0 7118 1159 5358
+
+T 44 4260 4222 * 4319 * * 5554 5263 3285 4210 * 3584 1745 * 3971 4382 4320 3899 5074 * 44
+ 1328 4623 834 3170 170 4563 62 6383 1121 6071
+
+K 45 4712 * 2587 4056 * 4319 * * 3514 3026 4588 3654 4580 4637 * 2434 3526 * * * 45
+ 252 * 2643 * * 4630 59 5184 0 6569
+
+P 46 3589 * * 4660 4180 5018 * 4557 4727 2857 * * 1410 * 3957 3593 * 4338 * * 46
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+
+G 180 4547 * 2883 4274 * 2862 3701 * 5609 5312 * 2072 4486 5495 4929 3697 3768 5513 * * 180
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+T 183 4130 5598 3517 3435 * 2592 * 5482 4461 * * 3207 3300 5288 4059 3082 3392 * * * 183
+ 0 * * * * 0 * 5810 0 1000
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+Y 184 5425 3952 * * 1638 * 4724 3512 * 5321 * * * * * * * 4007 * 1403 184
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+N 185 * * 3632 2998 * * 4494 5291 3832 5808 * 4032 * 3735 3600 2594 2724 5638 * 3636 185
+ 0 * * * * * * 5807 0 0
+
+Y 186 * * 5904 * 1103 * 4320 2313 * 5633 3962 * * * * * * 4641 5314 3097 186
+ 0 * * * * * * 5807 0 0
+
+T 187 4587 5580 3889 2554 4487 * 4131 4741 5638 5904 5461 5676 * 3114 4443 4667 3863 2701 5527 4773 187
+ 0 * * * * * * 5807 0 0
+
+L 188 * * * 3572 * * 4838 4521 3803 2843 5314 4090 * * 4609 * 1802 2577 5567 5265 188
+ 0 * * * * * * 5807 0 0
+
+W 189 * * * * 3588 * * * * 3077 * * * * 5808 * * * 2296 794 189
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+
+T 190 5454 5432 * 2404 5347 * * 3859 3382 5772 5105 5474 * 4587 3336 4897 3142 2357 * 5430 190
+ 31 5551 * 0 * 0 * 5749 1005 1003
+
+R 191 5272 * 5601 5624 * * 5905 * 1872 * * 3519 3657 4422 1217 * * * * * 191
+ 0 * * * * * * 5685 0 0
+
+K 192 4132 * * 2834 * * * * 1608 4239 * 3751 4071 3580 3074 3548 * * * * 192
+ 0 * * 0 * * * 5293 0 0
+
+//
+�HHsearch 1.5
+NAME d5222617b3ccb99da7e3ec0bb92c4cb5
+FAM
+FILE d5222617b3ccb99da7e3ec0bb92c4cb5
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:03:46 2013
+LENG 147 match states, 147 columns in multiple alignment
+FILT 138 out of 1740 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
+CHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9899999999999977899994879999999998578888999999999864345768857599999999998722422268999999998675899838
+69999999999489999999999998647899909399999998639
+>Consensus
+xxxxxxxxxxxFxxxdxxxxgxixxxexxxxlxxlxxxxxxxxxxxlxxxxxxxxxxxgxixxxefxxxlxxxxxxxxxxxxxxxxxxfxxxDxxxxgxI
+xxxelxxxlxxxgxxxxxxxxxxxxxxxxxxxgxixxxefxxxxxxx
+>d5222617b3ccb99da7e3ec0bb92c4cb5
+SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTV
+MGAELRHVLATLGEKMTEEEVEELMKGQEDSNGCINYEAFVKHIMSV
+>gi|125532611|gb|EAY79176.1| hypothetical protein OsI_34285 [Oryza sativa Indica Group]
+TEDELIYIRAQYNLLEPsSTDGRLCIENFRMALLQnSTDAMKESRALDILNALEPL--AYRRMDFEEFRAATISPYQLEALsRWEEIAGTAFEYFEQEGN
+RPITIEELAQVPTVSPKKQpqkklpqmgaegrKCRSVFYFCRTmVRRhfivlrtinkcfQYPRLSLIpGNLEMLNT-
+>gi|312380158|gb|EFR26239.1| hypothetical protein AND_07834 [Anopheles darlingi]
+-----RKVCFGLSKTPVPRKVVPPSKLLVLLLDRCRRPIVRSSSQ-------------------------------------------------------
+-----------------------------------------------
+>gi|145501910|ref|XP_001436935.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124404080|emb|CAK69538.1| unnamed protein product [Paramecium tetraurelia]
+-------LLKIFKFFDLTNQGFLKKQDFLKAIAKSGVtITEQEFAEKLWSHYSDG--V--QLNYKDFINRVVIKDSYQEdfsesriiASPLESLRakiql
+kgalgllnlaISLP-------NQFNCQQLQDYLRRQDID-----IEGLHQLfNGE---FMSQANLIGLIK--
+>gi|307187651|gb|EFN72623.1| EF-hand domain-containing family member C2 [Camponotus floridanus]
+-QPVYNEFIQMY--appkDTKDDIQILEYGKFKEALHQYlGDKITEHEIITIAR--yySSHE-KI-eHk-S-rEYVRQLLHTE-lYRFLWHDLDRL---k
+edL-----hhwdkDRTGFLPR-----------eslytilrgcrVPV--dvELLNSMLDHLcKAEDg---------------
+>gi|32394789|gb|AAN08425.1| phospholipase C-delta1 [Misgurnus mizolepis]
+-------IYSCMRKSDKDFDKKMSPKELKSFLQSINIEVDDDYAKILFEKCDTS--KSGFIEGKEIERFYKILTHRE------EIDVIYGEYAKTG-SLM
+STTDLLNFLLKEQKDsaSQTD-ALQLIDKyELDEDAKakqlMTKDGFLMYLHQ-
+>gi|258593894|emb|CBE70235.1| putative signal transduction protein with EFhand domain [NC10 bacterium 'Dutch sediment']
+VQSMQQFKERMFSRIDSDGSGGVDKTEFSDLAKKMSEmSGSSPNVEDVYSKYDAN--GDGALSADELNSFMKD--NAPAPPPMNgpmegrgmqgRLEGLF
+SKIDTDTDGGISKSEFGVFAENIRErKGDSIDGDKVFSVyDTDGDGSLSADELNSFMKDN
+>gi|332227145|ref|XP_003262752.1| PREDICTED: calpain-14 isoform 2 [Nomascus leucogenys]
+-EDQNERQNEFFTKFFEKYP-EINAVQLQNLLNQMTWSslgsrqpfFSLEACQGILALLDLN--ASGTMSIQEFRDLWKQL---------KLSQKVFHKQ
+D-HGSGYLNWEQLHAAMREAGIMLSDDVCQLMLIRYGGPRLQMDFVSFVHLMLR-
+>gi|281211821|gb|EFA85983.1| hypothetical protein PPL_01216 [Polysphondylium pallidum PN500]
+------------------------------------------------------------------------------TAAAAAATSSNNNNNSEsnaes
+gEQSPLLHSEHQHLpvdVK-gIGL-------------------------------K-
+>gi|168033621|ref|XP_001769313.1| predicted protein [Physcomitrella patens subsp. patens]gi|162679419|gb|EDQ65867.1| predicted protein [Physcomitrella patens subsp. patens]
+--------QQVYRYFDRTNSGCISFRQYAVGIAYVSShLRFKEAVVAAYNFCGGE--ENDLPDEPTLLRSLRVLIPSVSK---QQVKmivfwavpALCAQ
+LTNHEEVDVEVyeftcidgtqvlastdncslygrftcf---------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 8079 0 0
+
+K 2 3735 * 2830 2468 * * * * 2688 5654 5925 * 3197 2820 4774 3601 5511 5609 * * 2
+ 0 * * * * * * 9128 0 0
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+
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+ 0 * * * * * * 9781 0 0
+
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+T 18 5356 * 1930 2978 7025 4360 3985 * 4730 4238 6982 2722 4628 4074 6768 3881 4655 * * * 18
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+
+G 19 5812 * 3344 4740 * 2207 4242 * 2980 6234 * 2577 4005 3792 3839 6141 5153 7198 * 5986 19
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+ 64 5222 5893 0 * 580 1596 10753 1448 1388
+
+K 22 6847 6853 6071 3502 4303 5075 5041 3931 3173 3538 5432 5624 * 4703 3330 4449 3758 3576 6770 3154 22
+ 13 6846 * 2221 348 533 1694 10756 1190 1407
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+I 23 5868 * * * 5492 * * 1608 6703 1645 4348 * 7793 * * 6876 5937 2153 * * 23
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+T 24 * 5344 2264 4357 * 4991 * 6790 4918 * * 2863 4336 * 4377 2498 2103 * * * 24
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+A 25 3759 * 5005 4551 3049 6843 7253 3249 3019 3491 4661 5984 4621 5195 3903 5159 4428 3742 4950 5207 25
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+Q 27 7279 * 2419 1476 * 6904 6709 * 4554 4363 * 3677 7055 2939 4710 4880 4527 7274 * * 27
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+V 28 5511 5074 * * 1620 * 6839 3285 7191 1823 5005 * * 6893 * * * 3230 6959 3878 28
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+
+G 29 3827 7224 5011 4066 5520 4232 5102 4674 3492 3551 7133 4439 4987 3530 2656 5320 5358 3622 * 4211 29
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+D 30 3481 * 3164 3118 5267 6866 4983 5531 3847 4094 4873 4431 * 3513 3362 3699 3831 4629 * 6062 30
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+I 31 2895 5004 * * 3140 3684 * 3309 * 2230 4540 6049 * * 4421 5483 4497 2923 6738 5934 31
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+A 32 4055 5472 * * 3655 5882 6639 2782 * 1220 4066 7168 6486 5374 * 5921 * 3774 * 4478 32
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+L 35 5367 4921 * 6500 3741 5398 5447 3099 5547 1516 3757 5383 * 5758 5445 4790 5443 3596 7047 4884 35
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+
+G 36 4621 6994 4056 4661 5111 1443 6284 6335 5009 4395 6915 3775 5509 4160 4302 3670 4449 5868 * * 36
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+
+Q 37 4633 4383 4387 4051 3504 5934 5766 3808 4311 2711 4702 4801 4403 5358 4320 4782 5026 3354 6717 4796 37
+ 166 3438 5934 962 1039 665 1438 10922 2803 2486
+
+N 38 3652 6935 3056 4062 5654 4744 7012 4488 3125 5850 6087 3079 2952 4499 4993 3695 4924 5545 * 5557 38
+ 112 3908 6993 2171 362 1149 865 10937 2414 1809
+
+P 39 4441 7023 4228 4925 3489 5484 * 3705 4963 2545 4178 4971 2717 * 4864 4682 4455 3661 7255 5334 39
+ 34 5420 * 1519 619 0 * 10947 1714 1525
+
+T 40 5886 * 3238 7303 4415 5089 * 5112 3769 5016 5104 3912 3588 6070 5255 2098 2526 5741 * 5994 40
+ 35 6950 6002 5807 26 * * 10999 1036 0
+
+N 41 4229 6303 3083 2877 5473 6022 6108 4826 3913 3433 6851 4387 4201 4215 3934 3630 4037 5942 6945 4754 41
+ 19 7043 7441 1000 1000 888 1122 10979 1000 1178
+
+A 42 3899 * 2841 2165 5103 5432 6191 7336 3854 4468 5291 5167 3748 3800 4405 4299 3955 5520 * * 42
+ 12 6868 * 4087 87 0 * 10997 1000 1135
+
+E 43 4877 * 3195 1961 5186 * 5495 5254 4493 3437 4643 5773 7102 3018 4482 5290 4895 4692 5899 4679 43
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+
+I 44 2816 6126 * 5935 4829 7105 * 2271 6843 1890 4137 * * * 6700 4719 5940 2983 6109 4735 44
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+
+N 45 3743 6188 4392 2938 5210 6956 5388 4473 3356 4059 5453 4054 * 3100 3391 4064 4770 4056 * 5629 45
+ 22 6063 * 1585 585 * * 10999 1188 0
+
+K 46 3457 4637 3394 2779 6329 4742 6342 5385 2870 4559 * 5296 * 3567 3240 3957 4449 6858 6101 6199 46
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+
+I 47 4719 * * 5621 4578 6987 5515 2494 5231 1564 3338 * 7085 * * 5340 4484 3267 6249 4832 47
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+
+L 48 4269 6121 * 4932 1971 * * 3609 5020 2499 4198 7075 5460 6101 5973 5339 5091 3110 5475 4352 48
+ 90 4243 6974 2561 268 * * 10987 2132 0
+
+G 49 3353 5479 3646 3818 4362 5082 4611 5008 2604 4498 5552 4314 6003 3689 3723 3534 5654 6928 * 6045 49
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+N 50 3548 6974 5340 2954 4269 5634 4610 4852 4482 4094 4137 4277 * 4319 3037 3091 4712 4526 * 5466 50
+ 111 5000 4544 1000 1000 * 0 10965 1546 1222
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+P 51 3852 4417 5880 5883 2896 6056 4552 4225 4954 2366 4508 6023 5861 6025 5594 7240 5003 3850 6160 2791 51
+ 323 7367 2361 2807 222 2710 239 10955 1000 2238
+
+S 52 4812 * 1348 4055 4258 3604 * 6675 5064 5727 5001 4277 4053 4627 4582 4482 6450 6996 * 5107 52
+ 148 4246 4489 2421 298 721 1346 10669 1726 5344
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+K 53 3521 4473 5397 4102 4383 4457 4797 4123 3588 3734 * 4846 3465 4487 4205 3624 3924 4043 6808 * 53
+ 112 5265 4364 1195 828 1530 613 10885 1518 3610
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+M 56 5546 * 2171 3534 * 5690 * * 4699 4819 3757 2090 * 4522 4589 4692 3929 4071 5702 * 56
+ 151 3329 * 2781 227 251 2646 9366 1696 9151
+
+N 57 3994 5035 4153 3965 7015 2450 4566 * 3271 5357 * 3195 4286 3660 3637 3971 4581 * * * 57
+ 90 4543 5806 1658 550 228 2773 10889 1810 3075
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+A 58 4920 * 2015 4036 6935 3824 6158 4799 4326 6048 * 2968 5452 4129 5420 2855 4222 5351 * 5848 58
+ 31 6206 6965 3245 161 1961 428 10993 1178 1527
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+A 59 4781 6915 3462 3610 6823 1182 * 7199 5051 6958 6134 3635 5842 6020 4154 3953 5482 6792 * 6920 59
+ 44 5359 7388 2377 308 * 0 10963 1373 1683
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+A 60 5128 5174 5006 4474 5261 4401 4511 4630 2543 3966 4646 4478 * 3911 4013 3310 3485 5023 * 4638 60
+ 29 5629 * 1585 585 414 2004 10909 1225 2160
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+I 61 5045 7014 5998 * 4749 * * 1541 5030 2068 3527 * 5785 * * 6875 6993 2513 * * 61
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+
+T 62 5514 7018 2070 3998 * 4202 5381 * 4876 6834 * 3047 6909 5137 4980 2470 2612 7212 * 6924 62
+ 21 7167 7124 0 * * 0 10977 1000 1000
+
+F 63 5552 7028 7357 5110 1757 * * 5501 5054 2348 6029 * 6862 6819 4000 * 5899 4215 4126 2571 63
+ 0 * * 1445 660 0 * 10966 1217 1217
+
+E 64 3600 * 3540 2320 6849 6690 6208 7218 2810 7277 5361 3694 4287 4346 4636 3748 3924 4675 * 5507 64
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+
+E 65 4549 * 2596 1386 7421 4727 7062 7046 4699 6125 6994 4036 7015 3189 6849 4423 4700 6669 * 6958 65
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+
+F 66 7203 6985 * * 674 * * 5100 * 2648 5468 * * * * * 6981 4387 4724 4220 66
+ 35 5382 * 1628 564 0 * 10793 1620 1817
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+L 67 3738 4799 * 4814 6108 * 6029 3360 4542 2157 3931 6213 * 4802 4418 4008 5110 2662 * 4363 67
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+
+P 68 3440 7029 3326 3436 6000 5576 4243 5717 3737 4907 5522 4695 5446 3957 3659 3514 3567 4278 * 4608 68
+ 50 5805 5920 2513 278 970 1030 10989 1203 1226
+
+M 69 2944 6139 7118 5808 2725 4190 4779 3322 4974 2286 5437 6646 * 5635 * 4505 4090 4490 7053 4522 69
+ 22 6036 * 2308 325 576 1604 10955 1158 1421
+
+L 70 5014 4290 * 7158 3523 6928 5488 3024 * 1444 3660 * 7262 6027 6006 6966 5354 3112 6305 5281 70
+ 52 4829 * 4034 91 0 * 10973 1706 1018
+
+Q 71 3356 4563 4666 3584 5374 5219 4286 5039 2932 3594 5698 4820 6071 3746 3942 3377 4207 6704 * 5527 71
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+
+A 72 3434 5984 3931 3783 5101 5044 5391 4325 3557 3606 4891 3914 5121 6023 3710 3449 4241 4104 * 5056 72
+ 28 * 5678 * * * * 10987 0 0
+
+A 73 5087 6106 5583 4160 3364 6108 5308 3877 3899 2437 4496 7024 6785 3807 3996 4504 4802 3700 4836 4817 73
+ 205 6099 3086 2014 410 1475 643 10967 1157 1326
+
+A 74 3549 4570 4872 4945 4045 4344 4675 3633 4584 2298 3886 5060 5696 5930 4165 4511 5008 5019 6918 5146 74
+ 244 3455 3952 3319 152 2489 283 10856 2720 3784
+
+N 75 4821 * 4564 3394 4589 4123 4186 5193 2987 4876 * 4089 5328 3916 3564 2802 3955 6776 * 4864 75
+ 177 3494 5212 4699 57 3759 111 10787 2491 4405
+
+N 76 3855 6688 5822 2990 5572 3727 4863 3811 3293 3892 5398 3890 5165 4336 4037 3911 3918 5866 * 5217 76
+ 105 5073 4622 2741 234 2158 366 10752 1371 4568
+
+K 77 5966 5260 4351 3490 7074 4287 5518 5837 3923 3645 5694 3587 3693 5686 3399 3025 4150 3739 * 5166 77
+ 270 4307 3060 2882 210 1321 738 10807 2106 4459
+
+D 78 5006 6712 2850 3209 5649 5254 6926 6785 4242 3346 * 3076 3541 4040 3992 3016 5142 6904 * 6712 78
+ 304 5881 2531 2908 206 4842 51 10690 1365 4943
+
+Q 79 4189 * 4239 3427 6469 5340 5510 5536 2993 3246 * 4207 4082 3526 3897 4654 3856 4416 * 3921 79
+ 269 5260 2798 419 1988 2738 234 10078 1485 6814
+
+G 80 3310 * 2922 3924 * 4088 4733 4457 4850 3338 * 4157 4438 4845 4677 2976 3791 5414 * 5214 80
+ 126 3771 6557 2675 246 1630 563 10082 1905 7301
+
+T 81 3933 * 3831 3669 4658 4983 4508 3649 3875 3614 6542 4126 5011 5619 3438 3697 3508 4603 6129 6822 81
+ 59 5682 5623 2190 357 5339 36 10342 1222 5900
+
+F 82 6778 * 4320 2398 4279 4939 5371 4443 3692 3272 5067 5005 6723 4341 3189 4056 4876 4613 * 4280 82
+ 57 5089 6694 2959 199 409 2018 10318 1328 6008
+
+E 83 3534 * 2779 1977 6960 5361 5664 6911 3693 5083 5396 4014 4107 4127 4766 5521 4333 5350 * 6251 83
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+
+D 84 4019 7054 3240 2270 4590 6217 5458 4311 3046 3870 5646 4596 6953 4084 4911 4519 4385 5983 6856 5472 84
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+F 85 3611 6075 * 6961 3133 * 7152 2564 6753 1587 4486 6045 6681 5665 6906 4663 4994 3903 6142 6194 85
+ 32 * 5507 1585 585 749 1304 10934 1046 1782
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+V 86 4709 * 3332 2797 6993 5813 5724 3692 2912 3960 5156 4833 * 4115 2896 4568 4129 4724 * 7108 86
+ 34 6904 6041 3000 193 * 0 10934 1006 1773
+
+E 87 3411 6589 3834 3333 5455 6889 * 4274 3587 3780 6283 4073 5382 3461 3743 3945 4894 3512 6006 5395 87
+ 11 7035 * 1256 783 268 2561 10881 1372 2107
+
+G 88 1930 5403 * 5565 4716 6168 6108 2665 5013 2491 4270 6170 6844 5508 5667 4376 5006 4151 6938 * 88
+ 13 6851 * 2807 222 * 0 10978 1064 1046
+
+L 89 6147 4499 * * 689 6698 6917 4588 * 3463 4757 * * * * 6364 * 5937 5921 3482 89
+ 13 6841 * 5248 38 * 0 10978 1017 1046
+
+R 90 4030 7119 3506 3370 * 7350 4560 6724 2805 4508 6195 3626 6497 3169 2634 4249 4447 5884 * 6882 90
+ 67 4676 7264 1747 510 * 0 10978 1808 1046
+
+V 91 3237 5895 6207 3562 4724 6990 * 3786 3746 2803 3894 4679 6489 4001 4570 3834 5510 3426 6705 5253 91
+ 0 * * 0 * 0 * 10972 1046 1272
+
+F 92 5088 4851 6671 * 1706 7159 6300 3211 5402 2340 4778 5693 * 6946 6506 5879 * 4081 7252 3142 92
+ 39 7316 5601 2322 322 * * 10999 1000 0
+
+D 93 4131 6908 576 4674 * 4877 * * 6849 * * 5032 6489 5791 5936 5048 4241 6204 * 6767 93
+ 9 * 7377 * * 533 1694 10986 0 1289
+
+K 94 4117 * 5884 4627 6975 4801 4945 4879 2654 3440 5343 4634 4520 4410 3552 3744 3271 3891 7039 5078 94
+ 75 5521 5118 2344 317 0 * 11000 1349 1145
+
+E 95 4354 5879 1627 3421 * 4907 6921 6948 4790 5237 7049 2631 4665 4114 4447 3960 5142 * * * 95
+ 0 * * * * 0 * 10985 0 1729
+
+G 96 5156 7268 4034 4096 5365 2245 5070 5721 2787 * 6691 3254 5969 3213 3959 3555 5082 * * * 96
+ 48 5936 5921 1544 606 * * 10999 1210 0
+
+N 97 3929 5772 2209 4386 6125 5634 6810 * 3430 5732 6684 2925 6959 5083 4469 2387 4090 6159 * 6783 97
+ 22 7001 7121 2807 222 0 * 10959 1005 1198
+
+G 98 * 5796 3883 4275 * 844 5768 * 4194 6972 5998 4278 6240 5397 4088 4680 6111 6940 * * 98
+ 73 5129 5576 3323 152 * 0 10994 1526 1000
+
+T 99 4171 4168 5418 3985 3271 7125 5015 6242 3106 4269 5810 4679 4965 4478 4432 5253 3104 4422 7011 3288 99
+ 72 4686 6627 0 * 748 1305 10925 1760 1767
+
+V 100 5292 * * * 5555 6836 * 1270 6770 2324 4874 * * * * * * 1846 * 6870 100
+ 0 * * * * 1921 442 10919 0 1441
+
+M 101 5331 5441 2816 3499 6857 4917 5870 7781 5213 4926 7079 3749 4891 6271 4514 2381 2250 7013 * 5942 101
+ 11 7051 * 1585 585 * 0 10953 1007 1279
+
+G 102 3389 5306 6674 4375 4141 5515 5098 4372 2750 2966 6061 6998 5392 6108 3128 3768 4960 4209 7122 4435 102
+ 12 6925 * 3846 104 1023 977 10953 1232 1279
+
+A 103 3596 7021 2889 2060 6882 4570 4622 6780 4126 7061 6856 3880 6311 3459 4752 3046 4990 * * * 103
+ 0 * * * * * 0 10918 0 1054
+
+E 104 6259 * 2274 1375 6976 5036 6929 5970 4294 6838 6827 4407 * 3516 5172 4876 5650 4999 7194 6780 104
+ 14 6716 * 1585 585 * 0 10918 1023 1054
+
+L 105 6123 * * * 1684 * 7889 3261 * 1384 4561 * 7152 * * * 6838 3616 7365 4752 105
+ 11 7049 * 2000 415 0 * 10918 1016 1054
+
+R 106 5069 6150 4822 3807 4794 4563 5065 3251 2658 4026 5502 5053 * 4224 2938 4616 5287 3331 * 6134 106
+ 9 * 7265 * * * * 10972 0 0
+
+H 107 3813 7023 3059 3720 6043 * 4726 5010 2936 5200 5802 3686 * 3363 3932 3299 3632 7174 7004 5150 107
+ 0 * * * * * 0 10965 0 1046
+
+V 108 2560 6036 * 6849 3031 4436 * 2485 7107 2858 4267 7286 * 6271 * 5787 4680 2982 6117 4477 108
+ 18 7772 6959 1289 759 0 * 10965 1226 1046
+
+L 109 4575 5078 * * 3087 7094 6995 3617 * 1332 3062 * 6580 5885 * 5181 5271 3430 6095 6826 109
+ 61 4587 * 1561 597 * 0 10937 1714 1004
+
+A 110 5971 4676 4762 4195 7060 4219 4899 6107 2340 5502 5494 4470 6048 3016 3061 3219 3598 6837 * * 110
+ 15 * 6559 * * 0 * 10637 0 1004
+
+T 111 4141 6020 3553 3338 7131 5050 4925 5447 3232 3670 6044 3681 5197 5209 4323 3420 3248 4723 * 4977 111
+ 31 5550 * 1151 864 965 1036 10623 1501 1172
+
+L 112 3446 * 6948 5331 2945 7139 5413 3619 * 2297 3911 5431 * 4007 4958 3800 4986 3680 7113 4123 112
+ 323 3008 3714 1847 470 * 0 10621 3250 1000
+
+G 113 4411 5850 5330 4552 5190 961 6667 6622 4351 5108 * 4222 4054 5192 4466 4547 * * * * 113
+ 211 3305 4846 1280 765 678 1415 10340 2701 2623
+
+E 114 6757 6793 4561 2448 4202 6720 5114 3648 3936 2769 5331 3929 4123 3895 5816 5931 5793 3789 * 4965 114
+ 111 4318 5401 770 1273 2033 404 10474 1825 2221
+
+K 115 5407 6913 3981 3667 5871 3262 4379 * 3004 4526 5835 3332 3308 3981 3469 4463 5913 4448 * 6731 115
+ 120 3642 * 2426 297 1062 940 10467 2319 2405
+
+M 116 4639 * 6866 5340 3445 6866 6695 3086 6737 1744 3682 6881 3934 6238 6740 4829 4612 3620 5271 4914 116
+ 41 5590 7070 3053 185 1353 716 10500 1238 1675
+
+T 117 4318 5225 3014 4750 * 5878 * 7078 3795 4832 7079 3532 3329 5293 5841 2250 2792 4656 * * 117
+ 73 4615 6839 2621 256 * 0 10515 1707 1492
+
+E 118 4541 6309 2523 2085 5672 5322 6558 5304 4088 5747 * 3874 3565 5312 4764 4109 4550 4469 * 5939 118
+ 26 5815 * 970 1031 * 0 10497 1171 1693
+
+E 119 3274 6949 2964 2216 * 5194 6636 6619 3846 5282 * 4797 5040 3560 4486 2711 6616 5301 6898 6669 119
+ 14 6689 * 0 * 1002 998 10491 1192 1852
+
+E 120 5219 * 2560 1640 * 6906 4822 4079 4313 4013 * 5281 * 3364 5018 5079 4335 5813 6763 7005 120
+ 39 5719 7058 2729 236 601 1553 10517 1192 1347
+
+V 121 2774 7162 5840 * 4135 5332 * 2383 6858 2300 5336 * 6012 5868 5903 5414 6908 2365 * 4499 121
+ 0 * * * * 1069 934 10538 0 1165
+
+E 122 4662 5766 2882 2703 6338 6903 4857 5348 3446 4934 7102 3602 6787 3715 2876 4807 4428 4710 * 5859 122
+ 29 6753 6559 0 * * 0 10541 1027 1000
+
+E 123 3683 * 3727 2440 5875 4574 6717 4494 3738 4353 6677 4336 6825 4119 4229 3557 3623 5926 5863 4417 123
+ 25 5854 * 2070 393 866 1148 10502 1400 1220
+
+L 124 4863 6804 * 5763 3319 6794 6028 2382 5822 1795 3047 6791 * 7045 6914 5990 5167 3297 * 5333 124
+ 23 7030 6993 3170 170 * 0 10559 1000 1000
+
+M 125 5843 4811 * 6736 1882 * 6563 2483 6781 2191 3662 * * 6803 5819 6933 4784 4349 5308 5365 125
+ 89 4579 5781 2005 414 846 1173 10518 1931 1226
+
+K 126 3822 6748 3321 4020 7132 5331 5332 6740 2230 4028 7020 3784 * 3178 3570 3401 5280 6226 * 6793 126
+ 49 5252 7067 995 1005 * 0 10509 1350 1366
+
+G 127 3466 5228 4344 3145 3915 4514 5143 3752 3894 3821 4004 6963 * 3578 3312 4269 5076 5956 6682 7004 127
+ 1468 647 * 70 4407 421 1982 10507 8586 1526
+
+Q 128 3586 5172 1325 4905 4808 3380 6002 5817 6812 4547 * 4413 6907 5284 5234 5825 5912 4200 * 4524 128
+ 102 4291 5875 699 1380 * 0 10520 2059 1226
+
+E 129 4877 6889 4049 3979 5864 3679 6687 4022 2983 3073 5240 5960 4273 4738 3708 3887 3831 3898 6863 * 129
+ 63 4543 * 230 2765 2364 312 10515 1760 1758
+
+D 130 5726 * 1827 3601 5828 4878 6814 6653 3882 * 6547 2084 6620 5800 4752 4201 4281 4539 * 5806 130
+ 68 4741 6824 2282 332 384 2096 10526 1817 1582
+
+S 131 6889 5837 4169 2995 * 2113 6918 * 3112 4464 5894 3505 4947 4021 3330 4027 6935 5839 * 7086 131
+ 52 5276 6756 724 1342 893 1115 10546 1363 1211
+
+N 132 4261 6730 1631 3310 5884 5829 5989 * 4076 5180 * 3074 5268 4421 * 3261 4036 6900 * 6309 132
+ 25 5881 * 1680 540 976 1025 10527 1225 1187
+
+G 133 4858 * 3664 4904 * 1083 5195 7076 3700 6956 5346 3845 4392 * 4930 5309 4501 7016 * 6690 133
+ 50 5346 6725 2610 258 * 0 10520 1533 1226
+
+C 134 4115 5307 5862 4292 4436 4802 4761 4970 2778 4857 5240 5871 6915 3304 3389 4312 2899 4372 * 4782 134
+ 53 4784 * 787 1250 519 1727 10508 1770 1414
+
+I 135 6706 * 6825 6610 3871 * 6807 1624 6595 2133 4413 * * 6989 * * * 1855 * * 135
+ 29 5651 * 585 1585 * 0 10536 1226 1000
+
+N 136 5305 5317 2582 4833 * 6016 4957 6911 6007 5812 * 2971 5917 5819 4623 1790 2757 5739 * * 136
+ 0 * * * * * 0 10536 0 1000
+
+Y 137 5904 6793 * 7070 2200 6882 5737 4620 3449 2818 6739 6912 6715 6593 4418 6933 * 5328 3848 1938 137
+ 0 * * * * * 0 10536 0 1000
+
+E 138 4128 6525 2257 2616 6053 4890 4871 6319 3687 5852 7031 3454 5890 4106 4874 4241 3995 4787 * 6738 138
+ 18 6319 * 0 * * 0 10536 1075 1000
+
+A 139 4952 * 2335 1177 * 4188 * * 3555 7044 * 6851 * 3933 5958 4838 5158 6874 * 5801 139
+ 0 * * * * * 0 10536 0 1000
+
+F 140 6923 * 6595 * 689 * * 4931 * 2647 4904 6319 * * * * * 6745 5145 3552 140
+ 0 * * * * * 0 10536 0 1000
+
+V 141 3702 4887 6862 5714 5138 6579 5321 2750 3657 2122 4823 5325 * 4528 4839 5841 4474 3369 6078 5180 141
+ 13 * 6852 * * * 0 10479 0 1000
+
+K 142 2686 5832 3416 3789 6816 5124 4743 5924 3547 7058 6924 3161 * 4228 3972 2433 4802 * * 5753 142
+ 13 6826 * 2000 415 980 1020 10470 1010 1186
+
+H 143 2872 4712 5638 5855 2620 5750 4769 4165 4787 2974 3889 6734 * 5644 4405 5253 4636 3567 5293 5052 143
+ 0 * * * * * 0 10414 0 1000
+
+I 144 4678 5639 * * 3542 * * 2965 6434 1615 2923 * 6414 * * 4996 6662 2651 5245 5754 144
+ 0 * * * * * 0 10358 0 1000
+
+M 145 4019 5370 * 5266 4686 6162 * 4721 3026 2543 3812 5053 * 4462 3346 4020 2870 4797 6402 6394 145
+ 0 * * * * 0 * 10071 0 1000
+
+S 146 4287 * 3948 3162 5841 5039 4883 * 2900 5769 5988 3375 6017 4571 3022 2522 4710 5899 * 5919 146
+ 0 * * * * * * 9740 0 0
+
+V 147 4253 * 4318 * * 4269 * * * * * 1532 4400 3325 * 2285 * 3346 * 4350 147
+ 0 * * 0 * * * 7169 0 0
+
+//
+�HHsearch 1.5
+NAME d7be13700ed7588ca7b576ccd24889ab
+FAM
+FILE d7be13700ed7588ca7b576ccd24889ab
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:17:03 2013
+LENG 175 match states, 175 columns in multiple alignment
+FILT 117 out of 1090 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
+CCCCCEEEEEEEEEECCCHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCEEECCCCCCCCCCEEEEEEEECCCCC
+>ss_conf PSIPRED confidence values
+9872335548856887557777439999999999999998569987659999986500458999889878999999998199575455576355774556
+877641454207990787999999998569989999814503323577466578888885897999998568898
+>Consensus
+lPxxxDxrxxxxixxvxdQgxcgxCwAfaxxxxxexxxxxxxxxxxxlSxxxlxxcxxxxxxxxcxggxxxxaxxxxxxxxGxxxexxxpyxxxxxxcxx
+xxxxxxxxixxxxxixxxxxxikxxlxxxGPVxxxxxvxxxxfxxyxxgvxxxxxxxxxxxxHaVxIvGxgxxgx
+>d7be13700ed7588ca7b576ccd24889ab
+APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY
+NPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST
+>gi|288560029|ref|YP_003423515.1| adhesin-like protein with cysteine protease domain [Methanobrevibacter ruminantium M1]gi|288542739|gb|ADC46623.1| adhesin-like protein with cysteine protease domain [Methanobrevibacter ruminantium M1]
+LPSHFDARDWGWTTSAKIQGDNTDCWAFASISSLETSFAKASGVLYNLSQNYLQKLQLKyfySGDKRNsLTGFSYSGPGYALSWYGVLPV-DNGYDDRGM
+IADTDLEDERIHVQDVLFIDTgrddAVELIKWAILKYGAVTVQRGINGPYGELPTEGDDIAI---MSHGTHFISLIGWDD---
+>gi|170028894|ref|XP_001842329.1| conserved hypothetical protein [Culex quinquefasciatus]gi|167879379|gb|EDS42762.1| conserved hypothetical protein [Culex quinquefasciatus]
+IPTSFDARTRwpncPSIALIPNQGCCNSSAFQIPAAVITDRACIRSNGtsTRTYSAYDALACCTDCpfsQLFKCAGGDPLKVWNYWATT-GLVSDSCMPF
+SLSPlclgFNCPLLCApgYagsiVGDRKKGLKvvTVAPYVDAIQSEIILNGPVEASFDL-YLDFVHLKqSQVYNSRS-GPNLGRQSVKIIGWGVE--
+>gi|326787377|dbj|BAK08431.1| putative papain-like cysteine prorease [Plasmodium simiovale]
+----------SCVSKieAGDQGDCATSWLFASKVHLETIKCMKGHDHVASSALYVANCSNKEAKDMCHAPsNPLEFLNTMEETKFLPAESDLPYSYKavN
+NVCPEPKShwqnlwanvklldpqNepNSVSTKGYTAYQSdhfngNMnafiKLVKSEVMSKGSVIAYVKAD-ELMGYDLNGKKVLSLCGGETPNLAVNIVG
+YGN---
+>gi|89890478|ref|ZP_01201988.1| putative cysteine protease [Flavobacteria bacterium BBFL7]gi|89517393|gb|EAS20050.1| putative cysteine protease [Flavobacteria bacterium BBFL7]
+LPAVYDLGF--LMPAPRSQGAQGSCVSWATHYYLATYMDNIRNDSIISSIQEIMSPSFAfnqikasDGSNNCFGSTIAQNLDLLINT-GALPLSEFSYND
+--TTCAPQPDmiqlanTRNNLISSYENIGpytflePttqesliasSLNEVKSALFDNRPVIVSMLTD-EAFGRHrNEDVFTVSEINeaTVRGCHAMTIVG
+YNDD--
+>gi|285018828|ref|YP_003376539.1| cysteine protease [Xanthomonas albilineans GPE PC73]gi|283474046|emb|CBA16547.1| putative cysteine protease protein [Xanthomonas albilineans]
+PPENADLTQW-AIKP-SDQKQLGACASFATARTLAGWYANFTKQSvNLFAPMYLYTQV----NDGQDNGSTMeAPLDVALKQ-GIDTKADYFQGDydwRT
+KPTKHEranARNYKQPF-HYQMIYNnwgdnspvdsqaLIEQIKLAIANGTPVVIGFNV-RAGFDSLNqdHDIDYDNH-SKILDGHEVIALGYDKDG-
+>gi|339445227|ref|YP_004711231.1| hypothetical protein EGYY_16900 [Eggerthella sp. YY7918]gi|338904979|dbj|BAK44830.1| hypothetical protein EGYY_16900 [Eggerthella sp. YY7918]
+FPSKYSLVDEGVVTPVKLQNPWGTCWSFGGTAAAEVSLLSELGltydeTQLDLSELHtawmantplsdgssqdgegIHTTSSDDATVLSQSGFPFTLTSV
+YSSGIGPVPESVAPYKNKaekkeeiatpsgpipvwyskEGDWSVDQSLRfeqLYQLEESSILPSpaergaGVEAMKRELMQGRAVDIAFCS-DQTSTYIN
+NTTWSHYTYEEKPINHSVCVVGWDDN--
+>gi|297833374|ref|XP_002884569.1| hypothetical protein ARALYDRAFT_896743 [Arabidopsis lyrata subsp. lyrata]gi|297330409|gb|EFH60828.1| hypothetical protein ARALYDRAFT_896743 [Arabidopsis lyrata subsp. lyrata]
+-----DWRLiVDLLGPIIEQRE-AICWAIVLARLIEAMYNIWIGdskCFLRISVDDLVSKIKAE-DDDKEITTLNRCIKVIELE-GIKKVP---------
+TTSHANRDKIKTIKWVIDTNEaaDRNFIQTKLEI-SPVGIIIDI-DDEFSALREGFYKVrdvPRTGKTVSRHALMILGRG----
+>gi|118579734|ref|YP_900984.1| peptidase C1A, papain [Pelobacter propionicus DSM 2379]gi|118502444|gb|ABK98926.1| peptidase C1A, papain [Pelobacter propionicus DSM 2379]
+-PDRIDYRDRVYNPPlvclpeqypspefienhladytrkhklILNQGKEGACTGFGLAAVINYLLWKEcleagkdgGRsvsRIARVSPRMLYHMARIYDe
+wpGEDYEGSSCRGAMKGWHRH-GICTEQFWPYKTKFvpPKEGWQQDAARRPLGAYYRINKdSIADMQAAIREVGAIYVSASV-HKGWSLGASSTLPMIPF
+TTEVaGGHAFAITGYTTRG-
+>gi|297846494|ref|XP_002891128.1| hypothetical protein ARALYDRAFT_336538 [Arabidopsis lyrata subsp. lyrata]gi|297336970|gb|EFH67387.1| hypothetical protein ARALYDRAFT_336538 [Arabidopsis lyrata subsp. lyrata]
+------WETeeiKDIVGPVRDQKQHLLCWAYAASDLVSAQRILRqwENDYYPLCPHYLCRFVHPgwlgkdekaEPGHFCYRCSIKDALKHIKKE-GIPRE
+INSVFECSsDSRSRDPIPRGHGEVKSIRTLEDTLEAALKELPL-QPIGADLIV-FSDLWKSGRNIYHGPKSigSKFEGYHAVIIVG------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 5000 * 5750 * 3403 * * 3155 * 610 * * 5949 * * * * 4625 * 4993 1
+ 39 5233 * 2000 415 * * 8015 1133 0
+
+P 2 5895 * 5725 * * * * 6003 5610 * * * 197 * * 4857 * 5533 * * 2
+ 0 * * * * * * 8193 0 0
+
+R 3 3495 * 2874 3163 * * * * 3930 4706 6174 4562 3639 5248 4781 2009 3604 6189 * 5985 3
+ 29 * 5658 * * * * 8372 0 0
+
+S 4 4781 * 5278 4227 4562 * 5270 6147 3410 6129 5319 3507 * 4870 3612 1845 3369 4340 * 4635 4
+ 0 * * * * 0 * 8587 0 1081
+
+V 5 4320 * * * 1535 * * 4664 6210 4464 4711 * * * * * 6062 2794 2989 2448 5
+ 0 * * * * * * 8593 0 0
+
+D 6 6401 * 443 * * 6256 * * 6135 6109 * 3755 * * * 2983 6636 * * * 6
+ 19 6263 * 2000 415 * * 8681 1025 0
+
+W 7 3511 * * * 4207 6256 6301 5324 * 2036 6227 6369 6345 * * 3826 * 5536 1303 5135 7
+ 0 * * * * * * 8736 0 0
+
+R 8 4771 6552 6450 6358 * 4057 * * 3755 6176 * 6290 6340 4995 722 3694 5146 6269 * * 8
+ 0 * * * * * * 8736 0 0
+
+E 9 5045 * 1731 2712 6447 * 5307 6575 3645 5387 6459 3164 5309 5465 6518 3856 3872 5497 6380 6421 9
+ 404 3168 2908 1553 601 * * 8750 2351 0
+
+K 10 * 6236 5213 3371 6621 6309 3484 * 2311 3899 * 4305 4666 4641 4593 3934 5415 3271 4042 4115 10
+ 786 1716 3115 1497 631 3433 140 8552 4055 2657
+
+G 11 4216 * 3242 * * 1452 5247 * * * * 2604 5360 6269 4577 3413 3990 4862 * 6178 11
+ 78 5231 5260 3106 178 327 2302 8502 1147 3714
+
+Y 12 4210 3529 6225 * 4191 6614 6739 2904 4524 2798 4844 6560 * 5424 6625 5445 6564 2886 4915 2557 12
+ 0 * * * * 252 2644 8873 0 1820
+
+V 13 5602 4288 6598 * 4075 * 6605 1825 * 3006 3683 5406 * 6588 * 5324 4274 1982 * * 13
+ 35 * 5381 * * 0 * 8912 0 1000
+
+T 14 4729 * 6472 5071 6642 2703 * 6478 6683 5616 * * 2562 * 6592 2293 1762 4726 * * 14
+ 28 5723 * 1000 1000 0 * 8964 1122 1212
+
+P 15 3910 * 3794 3220 * 5719 4913 6701 4084 6566 6889 4881 1201 6545 5041 4040 5527 5525 * * 15
+ 139 4228 4702 2830 219 * * 8994 1741 0
+
+V 16 3429 * * 6349 5284 6718 * 2145 * 4630 6198 5044 3303 6632 * 6545 * 1227 * * 16
+ 0 * * * * 0 * 8956 0 1505
+
+K 17 5772 * * 4801 4354 4459 6793 3568 1765 4313 5136 6726 5651 5766 2328 4306 6468 5298 5650 5009 17
+ 39 7040 5693 0 * * * 9062 1000 0
+
+N 18 6619 6671 1065 5532 * * 4953 6563 6268 6605 * 1981 4823 6349 6866 3785 6261 6703 * 6721 18
+ 35 5389 * 3375 146 * 0 9073 1272 1202
+
+Q 19 * * 5468 6268 * * 6741 5861 * * * * 6071 147 * * * 5658 * * 19
+ 107 3813 * 1246 790 * 0 9073 1991 1202
+
+G 20 3767 * 6493 5545 * 897 * 7089 3893 6823 5998 4741 6843 4517 5145 4742 4786 6099 * 4279 20
+ 27 6756 6757 0 * 0 * 9114 1000 1202
+
+Q 21 4069 6708 3415 4190 6504 4660 5654 6520 3813 4151 6863 3026 3868 3928 4789 2538 4973 6372 6565 4473 21
+ 32 * 5496 * * * 0 9119 0 1006
+
+C 22 5458 1013 * 4922 5087 5150 4781 * * 3691 * 5695 * 4832 3909 4858 4329 5306 5725 5167 22
+ 29 5635 * 601 1554 546 1666 9089 1195 1383
+
+G 23 3818 5145 5193 4750 * 877 5320 6710 5654 5517 * 3732 5093 * * 3641 5788 * * 6297 23
+ 0 * * * * * 0 9141 0 1006
+
+S 24 3704 4770 4286 * 6650 3669 * 4562 * 3167 * 4319 * * 6625 1700 2547 4519 * 6583 24
+ 44 * 5051 * * * 0 9141 0 1006
+
+C 25 6720 422 * * * 5543 * 6350 * 6085 * 5536 * * 6741 2679 * 6809 * * 25
+ 0 * * * * * 0 9024 0 1526
+
+W 26 4245 * * * 6642 * * 6510 * 5501 * * * * 5327 5251 4442 3602 675 3344 26
+ 13 6749 * 2000 415 * 0 9024 1000 1526
+
+A 27 674 6512 6742 * 5734 4994 * 5063 * 4786 * 7499 5727 * 6090 3463 5054 3881 * 6837 27
+ 13 * 6816 * * * 0 9033 0 1526
+
+F 28 * 6700 * 5789 1108 * 4763 2963 * 6078 5750 5001 5733 5844 * 6908 6775 4141 4350 3068 28
+ 0 * * * * 909 1098 9025 0 1674
+
+S 29 866 * * 5817 * 3492 * 5690 6154 * * * * * * 2237 4380 4293 * * 29
+ 14 6649 * 4170 82 * 0 9123 1039 1233
+
+A 30 2042 * 5714 * 5048 3914 6154 3869 * 3767 6795 * 5240 * * 2622 2813 2983 5731 * 30
+ 0 * * * * * 0 9123 0 1233
+
+T 31 2210 5623 * * 6667 4755 6702 4120 4445 3372 5865 6686 * * 6777 3252 2116 2883 * * 31
+ 0 * * * * * 0 9123 0 1233
+
+G 32 2161 * 3463 3795 6959 3197 5290 * 4232 5884 6587 4537 * 4701 4687 2715 4025 6794 * 4399 32
+ 0 * * * * 0 * 9123 0 1233
+
+A 33 1923 5728 * * * 4630 4868 3870 * 2835 3415 * * * * 3057 3684 2911 * 6722 33
+ 0 * * * * * * 9155 0 0
+
+L 34 3472 6897 * * 3685 5766 5582 2257 * 1633 3948 * * * 6813 * 6652 2917 6669 5218 34
+ 26 * 5834 * * * * 9155 0 0
+
+E 35 3748 6182 * 875 6592 4539 * 6521 * * 6886 4704 * 4096 5031 3358 4086 * * 6646 35
+ 12 * 6906 * * * 0 9132 0 1193
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+ 0 * * * * * * 9283 0 0
+
+V 165 4234 6496 * * 6474 5736 * 3501 * 3015 3704 6653 * * * 6485 6373 776 * * 165
+ 15 6570 * 3000 193 * * 9283 1037 0
+
+L 166 3683 4166 6671 4620 * * * 3797 5047 2294 5233 4538 * 4659 5266 4781 2787 2371 * * 166
+ 0 * * * * * * 9283 0 0
+
+V 167 4316 5644 * * * * * 1083 * 2192 7048 * * * * * 6725 2171 * * 167
+ 0 * * * * * * 9283 0 0
+
+V 168 6674 7091 6842 * 6649 * 6836 2008 6244 3617 6063 * * * * 6767 3476 1056 * 5846 168
+ 0 * * * * * * 9283 0 0
+
+G 169 * * * * * 19 * * * * * * * * * * * 6238 * * 169
+ 0 * * * * * * 9272 0 0
+
+Y 170 * * * * 3778 * 6346 6547 6737 6229 * * * * 6405 * * 5143 1284 1215 170
+ 0 * * * * * * 9251 0 0
+
+G 171 5061 6747 1716 6699 * 1075 6589 * 6992 * 6810 3619 * * 6751 5171 5249 * * * 171
+ 15 6613 * 0 * * * 9238 1014 0
+
+F 172 5631 * 1513 3263 5860 6965 6652 5552 3945 4742 6845 4440 * 4906 6986 6551 2892 3398 6672 5623 172
+ 103 3866 * 477 1829 * * 9189 1669 0
+
+E 173 5717 * 1694 1505 * * * 5966 5031 * * 3976 * 5027 4862 3793 4154 5960 * * 173
+ 0 * * * * * * 8618 0 0
+
+S 174 4058 * 4214 4611 * 442 * * * * * * 4056 * * 4349 * * * * 174
+ 0 * * * * * * 6098 0 0
+
+T 175 * * * * * * * * * * * * * * * * 299 2417 * * 175
+ 0 * * 0 * * * 3173 0 0
+
+//
+�HHsearch 1.5
+NAME d973556a2b119e22f373f42b3ee50271
+FAM
+FILE d973556a2b119e22f373f42b3ee50271
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:01:59 2013
+LENG 205 match states, 205 columns in multiple alignment
+FILT 126 out of 1058 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
+HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
+HHHHC
+>ss_conf PSIPRED confidence values
+9864667122799999902354757999999999979999999999999988753004765789874199856668899999999961787889987889
+9999999880899999999999997478774799999589992899952688874566987589886524675888655789999999986599999999
+99539
+>Consensus
+xxxxxxxxxxlpxLpyxxxxLxpxiSxxxlxxHxxxhxxxyVxxLNxxxxxlxxxxxxxxxxxixxxxxxixxxaxxxxNHxxfxxxLxpxxxxxxxpxx
+xLxxxIxxxFGSxexfkxxfxxxaxxxxGsGWxwLvxxxxxxxLxixxtxnxxxpxxxxxxPlLxlDvwEHAYyldYxnxrxxYixxxwxxinWxxvxxr
+xxxxx
+>d973556a2b119e22f373f42b3ee50271
+MNDLEKKFYELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGEPSG
+KLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWKEVEKR
+FEDIL
+>gi|153955389|ref|YP_001396154.1| superoxide dismutase [Clostridium kluyveri DSM 555]gi|219855805|ref|YP_002472927.1| hypothetical protein CKR_2462 [Clostridium kluyveri NBRC 12016]gi|146348247|gb|EDK34783.1| Sod [Clostridium kluyveri DSM 555]gi|219569529|dbj|BAH07513.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
+---------NMKPEVFNF-NSVKGISQRQLNEHYK-LYVGYVNILNQiwntDYTPQNYTDSNP-TYSkMRSLKLGETYALNGVKLHNLYFKNMT---GGN
+TTPHGPVLNSIINQFSSYDNFLSYLTNVGLS--MRGWAILSIDSLDNKFHIIGSDLHDKGSVWISYPILVMDVYEHAYFMDFGTNKKEYISTFIKNINWT
+VVNKRFQK--
+>gi|302697213|ref|XP_003038285.1| hypothetical protein SCHCODRAFT_43770 [Schizophyllum commune H4-8]gi|300111982|gb|EFJ03383.1| hypothetical protein SCHCODRAFT_43770 [Schizophyllum commune H4-8]
+-----RALHTVRPLPYSVeEGLGRFMPPQALKTVAVDYLGGLVERLNNEIRDTELENKK--LVDvIIGAAQqenqvLAFNYGSLALNTSFFLRQLYSETH
+ERsmsy-----DLRTAIRTQYGSLAQLKSAFMGAASGMFSSGFLWLVSDS-RGNMGIVPTFGPGTLLIRsrshlaasdadfkrprsilddvdadsnpidv
+gipaqaalsdkltalnyGdvLYPLLCVPIYEHAWMsAGFGVwGREEWLRHMWSVVDWAAVSQNY----
+>gi|50547305|ref|XP_501122.1| YALI0B20086p [Yarrowia lipolytica]gi|49646988|emb|CAG83375.1| YALI0B20086p [Yarrowia lipolytica]
+---LGRALHTMPAYSGlgsqaAPTQINKFLSAETVKSAWFEHQHEMLERVNEGLAsseELEGLDLQSLALEtCNRSEDALHHFASGAFANDFFFKGVAST
+VkPGevsepidayhglyvsprdpdyqtvmpalatGetpawgNHPgtDDALYDLILTSFGTVEAFREHLLTKAESIFGNGYTWLVLSKHSGRLHLVNTYNN
+GF-IQkkgtnsaelaaeaaakraveadeakalaelqaeaqnkklnaleekllknkiykmevakqmrqaqpkilHDLKPLLNVNVWQHMWLNDYGAfGKRK
+YLDNFWEKIDWNVVKGRLQ---
+>gi|71402548|ref|XP_804176.1| superoxide dismutase [Trypanosoma cruzi strain CL Brener]gi|70867006|gb|EAN82325.1| superoxide dismutase, putative [Trypanosoma cruzi]
+------GFFSRPRLNYPVaSGIPAFISRRQFDVQYNIFHHDAVATLNRHTLgtSLEGHS-----LEtVIRRAsfdatqAAVHTAAAEHFNYCFFYKSLRP
+--WG-TAVPKQLREAFQLQYGrdgSVdvvEEVKRLFTVVVLSHQeRCGWVYLVWT--GKQFDVVEFPHGACPIGSDLIPLLAINVHEGAYSLDYGpSGLE
+QYAQNYFRACNWFLAERYYLQA-
+>gi|164688120|ref|ZP_02212148.1| hypothetical protein CLOBAR_01765 [Clostridium bartlettii DSM 16795]gi|164602533|gb|EDQ95998.1| hypothetical protein CLOBAR_01765 [Clostridium bartlettii DSM 16795]
+------------KLNYNFYDLNDFINSNELKYSYC-QYGAYLDNLNHILKDYKEFKDAS--LKdLLTNLDsmpdeialKVKINASNALNYEYFFNNLSS-
+-E-KTFAKGKILKEINNSFSSFDNFKKEFEKIALN-SNSDWIFLALNS-QNKLYLTTSKEVSSPVIYKDKIILCLNLDKEIY-----SNREQIIHNFLNY
+VDWNIANKNYN---
+>gi|294948608|ref|XP_002785805.1| superoxide dismutase, putative [Perkinsus marinus ATCC 50983]gi|239899913|gb|EER17601.1| superoxide dismutase, putative [Perkinsus marinus ATCC 50983]
+-----------FDVPFStYANFFPLVQPKALSYHYRSICGRDTARFNTGLRQLSLLPNlpthvrhMGFdallyfcEYEnILSEEiplplcDKLVYYGNSY
+IYHEIYFNCLRA--TGMyddfEEPlsleSSLLVQDITNAFGGMKELFEELLEAALSLDGYGWVWLLSLP-EG-LSVITSQDYDGIHGDQIYAIFNIDLWE
+HAYIESHGANVEAYIKAWWGAVDWNKLDVQY----
+>gi|261884240|ref|ZP_06008279.1| superoxide dismutase(Fe) [Campylobacter fetus subsp. venerealis str. Azul-94]
+-----------RHSPFNP-ATNAVVSEQTCNYHYGKHHQSYVNNLSNLIKgtDFEGAD----LFEILtHSEGAIFNNAAQIDTHDFYWDCIAA-------
+----------------------------------------------------------------------------------------------------
+--------
+>gi|342180748|emb|CCC90224.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
+-----------------------------------------------------------------CLSHRAHFLASEDFCHSLVKRCTRRV--ACPVP-A
+EWKGIVSRQFASEAALEAELVFRAANRREAGWTWLVYDNqrpEEQRLVVVNMPGNRTPLLLGLWPLGVVDMTDKAVV-----------------------
+--------
+>gi|167569530|ref|ZP_02362404.1| manganese and iron superoxide dismutase [Burkholderia oklahomensis C6786]
+---------QMKALSCDP-AQLPDLSERLIVGHYEHNSGGAVKRLNAITDQLAGIAPGSTPVFvPNGLKREELVAANSMILHEIHFENLGA--S--RSID
+RTPEAAIKRDFGSVDRWRDECR------------------------------------------------------------------------------
+------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 0 * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+N 2 * * * * * * * * * * * 0 * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+D 3 * * 0 * * * * * * * * * * * * * * * * * 3
+ 0 * * * * * * 1548 0 0
+
+L 4 * * * * * * * * * 1195 2861 * * 2754 * * 2779 2926 * * 4
+ 0 * * * * * * 3227 0 0
+
+E 5 2322 * * 3175 * 3516 * * 2708 * * * 3120 3954 3633 3025 3928 * * * 5
+ 62 * 4567 * * * * 4124 0 0
+
+K 6 5305 * * * * 5523 * 5334 4072 5170 3598 * * 4192 956 4317 5075 3767 * 4842 6
+ 32 5493 * 2807 222 * 0 5223 1000 1000
+
+K 7 3708 6360 5796 5350 6010 2304 * * 4915 3842 3526 5414 4606 * * 2420 3047 6082 * 3757 7
+ 65 4502 * 2792 225 * 0 5798 1098 1000
+
+F 8 2893 * 6667 3933 4055 6491 * 3560 3581 3850 4438 5575 3502 6683 * 3421 3441 4017 * 3866 8
+ 19 6251 * 732 1329 0 * 6102 1302 1000
+
+Y 9 4151 * * * 1817 6203 2070 6147 5744 5082 * * * 6923 * * * 4576 * 1758 9
+ 12 6915 * 0 * * * 6161 1000 0
+
+E 10 4239 * 6279 3075 6698 * 5147 5405 3259 5948 * 6925 4657 4660 4031 2655 2069 4101 * 5093 10
+ 0 * * * * * * 6215 0 0
+
+L 11 4974 6404 * * 5769 * * 3656 * 990 3969 * 4028 4823 4551 5696 6203 3068 * * 11
+ 16 6473 * 1000 1000 * * 6253 1000 0
+
+P 12 4911 * * 5543 5969 5894 * 5750 4267 5254 5776 7330 721 5823 4353 * 4122 4352 * 6397 12
+ 0 * * * * * * 6358 0 0
+
+E 13 4028 * 3369 2657 * 6713 * * 2734 * * 5571 1687 5858 4659 4653 3688 5817 * * 13
+ 7 7731 * 1000 1000 * * 6365 1000 0
+
+L 14 * * * * 6086 * * 4709 6243 393 5699 5839 4766 * * 6633 5395 4414 * 5811 14
+ 45 6315 5775 1585 585 * * 6394 1007 0
+
+P 15 3913 * 3640 4502 * 4796 6481 6316 3555 5528 6580 4530 1112 5946 * 3183 * * * * 15
+ 42 5963 6282 0 * 1011 989 6554 1125 1071
+
+Y 16 * 5490 * 5481 2398 6281 4783 6375 6089 4672 * 4440 * * 5366 * 5913 * 5543 884 16
+ 72 5085 5691 2470 287 * 0 6549 1127 1097
+
+P 17 2414 * 2398 3982 * 4365 5165 * 4561 4387 * 2779 3625 5813 4542 3667 5229 * * * 17
+ 113 3910 6837 1104 903 370 2143 6534 1428 1234
+
+Y 18 3738 * 6527 4817 3216 * * 5573 3920 4249 6676 5351 3374 4168 5761 5338 * 3300 * 1735 18
+ 333 2531 4905 1303 750 0 * 6561 2099 1066
+
+D 19 3794 * 2004 4077 * 5518 5023 * 2974 * * 2684 6779 4501 3619 4116 4129 * 6430 5460 19
+ 13 6778 * 0 * 240 2707 6528 1000 1188
+
+A 20 1569 * 3046 4017 6671 2111 * * 4642 6872 * 4180 * 6299 5675 3783 6497 5708 * * 20
+ 17 6447 * 2322 322 * 0 6578 1017 1000
+
+L 21 6863 5383 * 6279 3722 6540 * 3585 6671 622 6087 7125 * * * 6388 6597 4262 * 5116 21
+ 0 * * * * * 0 6578 0 1000
+
+E 22 3403 * 4489 1283 6122 4600 * * 4235 3294 5857 3797 3788 5929 * 4290 * 6597 * * 22
+ 203 3695 4211 2400 303 * 0 6578 1464 1000
+
+P 23 3906 * 4391 6557 * 3117 6367 * 3601 * 6294 5264 730 7087 * 5938 * * * * 23
+ 0 * * * * 0 * 6487 0 1350
+
+H 24 4501 * 5368 6477 2304 2508 3968 4755 6661 2673 * 7235 * 6740 * 6582 6084 3377 * 2868 24
+ 12 6864 * 0 * * * 6616 1007 0
+
+I 25 * * * * 2911 * * 1151 * 1935 4164 * * * * * * 4161 * 4524 25
+ 0 * * * * * * 6628 0 0
+
+S 26 6914 7395 2558 7043 * * * * * * 6066 4688 6373 6215 * 606 3796 * * * 26
+ 0 * * * * * * 6668 0 0
+
+R 27 2351 * 4032 2393 * 4708 * * 4157 6040 * 4867 2663 4977 3730 3113 5157 * * * 27
+ 11 * 6991 * * * * 6668 0 0
+
+E 28 3679 * 4628 2215 * * 7043 * 2596 6441 5932 3549 * 2458 2728 6040 6588 7111 * 6156 28
+ 0 * * * * * 0 6647 0 1002
+
+Q 29 3219 * * 5081 * 3253 * 3015 * 3672 * 6423 * 2838 * 5152 1552 4820 * * 29
+ 0 * * 1000 1000 0 * 6647 1002 1002
+
+L 30 6967 * * * 3013 * * 2502 * 1574 2329 6827 * * * 6021 * 3178 * 5509 30
+ 11 * 6991 * * * * 6668 0 0
+
+T 31 6160 * 2801 2178 6019 5985 * 6562 2631 5684 6681 3178 * 3899 3243 4275 4692 * * 5998 31
+ 17 6380 * 1000 1000 * 0 6647 1020 1002
+
+I 32 4482 6757 5377 4621 3348 6376 * 3278 * 2359 5038 5528 * 4851 * 4188 3062 3095 6190 3627 32
+ 0 * * * * * 0 6676 0 1002
+
+H 33 3221 * 6431 * * * 467 6671 * 4696 * 6049 * 5255 * 4911 6478 5419 * * 33
+ 5 8283 * 1585 585 * 0 6673 1000 1002
+
+H 34 5427 * * * 3488 * 1700 * * 4909 6972 * * * 6567 5118 * 7079 2496 1668 34
+ 131 * 3525 * * * 0 6678 0 1035
+
+Q 35 6476 6094 2721 3569 3766 2843 4675 6373 4117 5308 * 3917 * 4405 5477 3224 3333 4348 * * 35
+ 96 6381 4259 1000 1000 218 2836 6467 1031 1650
+
+K 36 5696 * 3590 3551 6126 3729 * 4938 1396 * 7102 4194 * 4032 4323 5477 4462 4107 * 6473 36
+ 0 * * 2585 263 0 * 6607 1002 1349
+
+H 37 * * * * 4763 * 883 4328 * 2911 * 4658 * 6160 4688 6600 6738 7021 5007 3520 37
+ 9 * 7270 * * * * 6687 0 0
+
+H 38 6404 5561 * 6766 7059 6089 1244 * * 4719 * * * 2311 6082 6735 7037 5622 * 2173 38
+ 15 * 6570 0 * 0 * 6664 1000 1000
+
+Q 39 3269 * 5749 4641 * 3324 5429 6942 2520 6491 * 5317 6954 1788 3775 4059 4964 4915 * * 39
+ 0 * * * * 0 * 6832 0 1007
+
+A 40 2378 * 4437 6404 5609 1548 5171 7125 7064 6353 6724 4932 7174 5166 5526 4881 3033 6338 5989 4332 40
+ 0 * * * * * * 6840 0 0
+
+Y 41 3664 5413 5507 * 6748 * 6615 6392 7125 3155 5279 * * * * 6630 * 4570 * 629 41
+ 23 6748 7276 2585 263 * * 6840 1000 0
+
+V 42 4768 5514 * * 6216 * * 2759 * 3010 6065 * * * * * 3781 834 * 7070 42
+ 11 * 7033 * * * 0 6838 0 1000
+
+D 43 3363 * 2023 3628 * 6978 * 6970 2953 * * 2066 * 4631 7238 4522 3653 5507 * * 43
+ 0 * * 0 * 924 1080 6829 1002 1065
+
+G 44 4775 6793 5868 5229 * 4129 * 6670 2161 6635 5938 1699 * 4460 2756 5011 4032 * * * 44
+ 11 * 6982 * * * 0 6838 0 1000
+
+A 45 3426 * * * 4348 * * 6251 * 637 6201 * * * 6868 6411 3601 4629 * 4471 45
+ 9 * 7374 * * * 0 6835 0 1060
+
+N 46 * 6377 * 7196 * 6933 7574 * 5701 6366 * 253 * 6785 6301 7215 4076 6739 * * 46
+ 24 * 5945 * * * 0 6833 0 1112
+
+A 47 2590 * 3409 2726 * 6468 5484 5665 2795 4196 5058 4406 * 3859 4479 4120 3680 * 6615 * 47
+ 30 5590 * 1609 573 1201 823 6816 1152 1249
+
+L 48 1967 6785 7126 4886 7579 5003 4302 3300 6871 1726 7056 6739 6741 6805 5424 5323 4564 3858 * * 48
+ 30 6026 7569 2139 372 * 0 6833 1049 1112
+
+L 49 4829 6822 5599 3953 6720 * 5777 4189 5967 1578 6022 4843 * 5185 4647 6530 2827 2851 6457 5807 49
+ 73 5113 5594 1945 434 2420 298 6837 1159 1153
+
+R 50 2700 * 4443 2210 * 4446 7182 * 2656 4631 6440 4345 5995 4115 3756 3627 5619 5445 * * 50
+ 667 1434 * 1155 860 1272 771 6805 3405 1324
+
+K 51 4431 * 3485 2651 * 3260 7332 7312 2502 5759 5621 5360 4160 2770 4830 3714 5436 7730 * 7213 51
+ 154 4297 4318 1423 673 * 0 6805 1354 1163
+
+L 52 6492 6890 7250 * 3658 6337 6246 3715 6812 1231 4562 4882 * 7364 6634 5314 3679 6204 4839 3134 52
+ 64 4761 7226 866 1148 682 1408 6777 1191 1534
+
+D 53 2875 7396 4251 2062 6908 4322 6761 7720 3462 6432 * 4960 4200 3723 4002 3672 5295 6044 * 4402 53
+ 79 4703 6047 1183 838 2257 339 6805 1216 1221
+
+E 54 4034 * 3199 2395 5356 2753 5966 6226 3873 5204 * 3778 5045 4103 6999 3324 5168 5760 7301 5592 54
+ 204 3420 4693 1063 940 * 0 6643 1618 1286
+
+A 55 2900 * 4432 4476 5571 5183 5192 5385 3193 2509 3818 5366 6374 4937 3502 3986 5983 5784 6874 4153 55
+ 44 5720 6530 1571 592 2085 388 6588 1079 1559
+
+R 56 4688 7303 3630 4551 5099 5653 5288 5741 5169 4074 * 4205 3575 5818 3045 1873 3662 6160 * 6980 56
+ 974 6306 1064 1585 585 * 0 6717 1031 1485
+
+E 57 2807 * 2434 3813 5753 4398 * * 3937 3617 * 4634 3973 3737 3787 3463 4965 6171 * * 57
+ 214 4477 3428 2230 346 5253 38 6223 1094 4338
+
+S 58 2525 * 3898 4000 * 5650 * 4803 3602 4889 5088 3281 4596 3669 4377 3895 2808 * * 6102 58
+ 37 * 5295 * * * 0 5859 0 4465
+
+D 59 3498 * 4262 4317 * 1832 * * 5612 * * 3025 3496 4739 * 2214 5379 5692 * * 59
+ 1860 4729 542 3139 174 4406 70 5854 1203 4519
+
+T 60 4178 * * * 3763 4061 * 4068 2721 3695 * 3451 * 4277 * 3176 3043 3925 * 3611 60
+ 708 1367 * 1585 585 1401 686 4851 1499 5689
+
+D 61 4030 * 2547 4138 5286 4885 5668 4682 * 3953 * 3100 3428 5779 * 2978 3905 3520 * 5673 61
+ 152 3325 * 1248 788 113 3734 6463 1320 4287
+
+V 62 4588 * 6081 5946 3329 5140 6460 2882 7113 1518 6370 5008 5045 7417 6298 5473 * 3205 7311 3904 62
+ 33 5452 * 1644 556 2140 371 6787 1107 1241
+
+D 63 3869 6295 3679 1855 6193 5610 5217 5962 4507 4665 5529 3934 4650 4350 6108 3495 3205 7402 * 6588 63
+ 2433 296 * 419 1989 1803 487 6796 5564 1171
+
+I 64 5641 6311 7250 7483 4376 * 5528 1762 * 2145 4035 6662 * 4392 5613 * 5892 2911 * 3722 64
+ 9 7370 * 4165 83 * 0 6804 1047 1103
+
+K 65 4260 7370 7224 5668 5570 6351 5887 2290 4070 2021 5988 4312 * 6542 3689 4548 5552 2874 * * 65
+ 0 * * * * * 0 6804 0 1103
+
+A 66 2952 5573 5597 4527 5704 3444 4938 6394 3292 4829 5711 4209 * 3814 3683 2724 3572 4826 * * 66
+ 32 7500 5912 0 * * 0 6920 1000 1103
+
+A 67 4440 * 4623 3480 6712 5845 5361 5397 4884 2019 5766 3449 * 5031 4407 3880 3584 3484 5953 5401 67
+ 8 * 7431 * * 2082 389 6913 0 1239
+
+L 68 2689 * * 3917 6018 5163 * 4277 2750 2609 * 6146 5556 3881 4857 2776 4101 5719 * 6610 68
+ 289 2794 4746 2438 294 2561 268 6931 2029 1215
+
+K 69 3246 * 3483 5386 7268 4000 3762 6485 2755 6809 5966 4093 5037 4791 2638 3321 4965 5708 * 5857 69
+ 1030 971 * 2529 274 300 2412 6921 4349 1498
+
+E 70 2490 * 3687 3642 5800 3636 4610 * 3317 4829 5595 4532 4415 5318 3288 4211 4425 4303 * * 70
+ 50 4862 * 1834 475 2390 305 6916 1206 1266
+
+L 71 4026 * 7281 3362 4433 * 6644 2061 * 2224 4443 * * 5541 * * 3992 2360 * * 71
+ 56 4725 * 229 2768 733 1327 6918 1233 1203
+
+S 72 4826 * * * 1805 4386 3291 4097 3708 4375 6365 6420 6510 5039 3282 4430 4710 4750 * 4169 72
+ 15 6561 * 1000 1000 * 0 6858 1016 1041
+
+F 73 * 7053 7511 5734 2286 * 4204 5010 4859 6183 6490 1292 * 4995 * 5026 4658 4953 5799 4101 73
+ 8 * 7584 * * * 0 6858 0 1041
+
+H 74 3287 5369 * 4331 4551 5383 5175 * * 3966 6007 1333 * 4450 6655 5233 5057 * * 2830 74
+ 0 * * * * 0 * 6865 0 1084
+
+V 75 1018 7155 7221 * 5122 2183 * 6446 * 3181 6824 * * * * 5996 5183 4658 * 5048 75
+ 0 * * * * * * 6890 0 0
+
+G 76 2654 6095 4653 * * 1361 * * * * 6492 3265 * * * 1983 5087 * * * 76
+ 0 * * * * * * 6890 0 0
+
+G 77 4808 * * 3766 * 1226 4938 * * 5505 4206 4526 * 2213 * 3603 * * 6252 * 77
+ 0 * * * * * * 6890 0 0
+
+Y 78 2453 6714 5529 * 5219 6637 2025 3566 * 4145 3705 * * 6934 * 5532 5258 2606 * 3929 78
+ 58 * 4657 * * * * 6890 0 0
+
+V 79 7302 * 7251 * 2903 * 3925 2825 4045 2863 * * * * 6761 4969 6071 3360 2895 2639 79
+ 11 * 7094 * * 0 * 6948 0 1245
+
+L 80 6548 6295 * * * * * 6278 * 2173 6437 574 * * * 5039 6018 * * 6274 80
+ 0 * * * * 0 * 6885 0 1000
+
+H 81 * * * * * * 519 * * 3900 * 2607 * 5641 * * * * * 4290 81
+ 0 * * * * * * 6889 0 0
+
+L 82 4245 4498 4572 2128 * 7527 3485 4895 5630 7241 * 3625 * 4332 5437 2459 3115 6934 * 5818 82
+ 17 * 6449 * * * * 6889 0 0
+
+F 83 5985 * * * 1576 * 7083 3233 * 1604 4704 * * 6890 6322 * * 4752 6332 3364 83
+ 0 * * * * * 0 6876 0 1040
+
+F 84 6529 * * * 955 * 6407 6274 * 5403 * * * * * * * 4865 6264 1405 84
+ 0 * * * * * 0 6876 0 1040
+
+W 85 * * * * 1275 * * * 6282 3629 * 6446 * * 5995 * * 6333 1218 5398 85
+ 10 * 7218 * * * 0 6876 0 1040
+
+G 86 3539 6723 3490 2132 * 5331 5702 * 2980 4781 * 3287 5306 3777 4635 3380 4986 7423 * 7432 86
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+//
+�HHsearch 1.5
+NAME da9c94dd81bbb9286cd73b3d2469179c
+FAM
+FILE da9c94dd81bbb9286cd73b3d2469179c
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:41:31 2013
+LENG 117 match states, 117 columns in multiple alignment
+FILT 107 out of 163 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHCEEEEEEEECCCCCCCCC
+CCCCCHHHHHHHHCCCC
+>ss_conf PSIPRED confidence values
+9866677889999999999999983987897899999999999998998398779874799707666437702168467670915587677644467674
+34238999999870369
+>Consensus
+xxxxxxxxxxxexxxxxxekxaexxGyxlNpDxexxxxvxxGLxxnkxxyGxxxCPCRxxgdkexdxxxxdiiCPCxxixexGxChCxLfvxxexxxxxx
+xxxixxxxxxxxxxxxx
+>da9c94dd81bbb9286cd73b3d2469179c
+TSSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGD
+AQDIPMETLEEVKASMA
+>gi|298676070|ref|YP_003727820.1| hypothetical protein Metev_2198 [Methanohalobium evestigatum Z-7303]gi|298289058|gb|ADI75024.1| conserved hypothetical protein [Methanohalobium evestigatum Z-7303]
+---SSEarTERRKNKLRELFTRVVDPLGYKFSPDEELVDFLLEQEVMTEREKGAPYCPCQALPGNREEDMKLV--CPCIPFNRKhfdimKRCWCGLFVHK
+DVTDPDKLEQISPKELEkmEKE----
+>gi|294495625|ref|YP_003542118.1| ferredoxin thioredoxin reductase subunit beta [Methanohalophilus mahii DSM 5219]gi|292666624|gb|ADE36473.1| ferredoxin thioredoxin reductase beta chain [Methanohalophilus mahii DSM 5219]
+---QE---DKVKT-KNWVTKYAQKKGYKLNPDPEMLDLVIEGLANNKIKYGKGYCPCRIPSGDEKEDRKI--ICPCIYHEDEiatdGSCHCDLFFQKvDD
+EKK---EEQQNDSED-------
+>gi|206890211|ref|YP_002249669.1| rubredoxin [Thermodesulfovibrio yellowstonii DSM 11347]gi|206742149|gb|ACI21206.1| rubredoxin [Thermodesulfovibrio yellowstonii DSM 11347]
+------PEKLYEVL----DRYAKSKGLELNKDKNFVFELLKGLLKNEERYGYRSCPCRLASGDKQRDADI--ICPCVysidDIKEYGRCYCGLYVTEEYN
+QGKIEERIVPERRKK------
+>gi|302038852|ref|YP_003799174.1| putative ferredoxin-thioredoxin reductase, catalytic subunit [Candidatus Nitrospira defluvii]gi|300606916|emb|CBK43249.1| putative Ferredoxin-thioredoxin reductase, catalytic subunit [Candidatus Nitrospira defluvii]
+---AEPSKESLDKMWKYVKGFAEKSGTAMHPNEAVTNAVVLGLAAHVDELGKPLCPCNFYPDKQAEAKLRRWMCACDEMQIYKYCHCLLFVREDG-----
+-----------------
+>gi|88602537|ref|YP_502715.1| hypothetical protein Mhun_1252 [Methanospirillum hungatei JF-1]gi|88187999|gb|ABD40996.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
+----------TeEEIRSWALEYSRSHGWVLNPDEKQTNAVIKGLSRNSEKHGERYCPCRIRsGDKEKDKA---IICPCVYhvheLEQAGHCTCNFFYDPE
+-----------------------
+>gi|91774293|ref|YP_566985.1| hypothetical protein Mbur_2384 [Methanococcoides burtonii DSM 6242]gi|91713308|gb|ABE53235.1| Hypothetical protein Mbur_2384 [Methanococcoides burtonii DSM 6242]
+----------EEEFYNRSKKNAETTGYRLNPDYDVITIAVKGICNNKREYGEWYCFCQKRtGDVEKDKK---IICPCAArsrdVEMRGSCKCGLYIK---
+----------------------
+>gi|149195059|ref|ZP_01872151.1| Rhodanese-like protein [Caminibacter mediatlanticus TB-2]gi|149134772|gb|EDM23256.1| Rhodanese-like protein [Caminibacter mediatlanticus TB-2]
+---------EFLKTEKFAHRVINQFNWKFNPNEEIVERVLKGLTNNKILYGKRFCPCFPVEkRNGKYVSSDDRICPCPQaiekeIPEDGVCHCGIFCNEE
+YVKNE------------------
+>gi|152991978|ref|YP_001357699.1| hypothetical protein SUN_0382 [Sulfurovum sp. NBC37-1]gi|151423839|dbj|BAF71342.1| hypothetical protein [Sulfurovum sp. NBC37-1]
+-----------KKQQRWMEKYCEQNGYTINPSWMMATNLKSNLCEMEETFGKRYCPCFEPsGDKELDKK---MMCPCDYvedeIKEYGTCHCALFGPADL
+SK--------------------
+>gi|334340537|ref|YP_004545517.1| hypothetical protein Desru_1975 [Desulfotomaculum ruminis DSM 2154]gi|334091891|gb|AEG60231.1| hypothetical protein Desru_1975 [Desulfotomaculum ruminis DSM 2154]
+-----------EEIEQRIEAFAKLRGFVFNEDRGM---VLEGLMEKKKQFGDFFCPCKFDNI--P-----ENICPCLEtrkgfVRKEGRCHCGLFN----
+----------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+T 1 * * * * * * * * * * * * * * * * 0 * * * 1
+ 0 * * * * * * 1000 0 0
+
+S 2 * * * * * 1582 * * * * * * * * * 587 * * * * 2
+ 0 * * * * * * 1462 0 0
+
+S 3 * * * * * * * * 2044 * * * * * 2061 949 * * * * 3
+ 0 * * * * * * 1536 0 0
+
+D 4 3806 * 1932 4956 * * * * 4507 5430 5001 4298 4573 3074 * 2221 3890 4561 * * 4
+ 152 * 3325 * * * * 3581 0 0
+
+T 5 3971 * 4738 1763 * * * * 3063 2921 * 5267 * 3065 4977 4110 3412 5420 * * 5
+ 79 * 4227 * * * 0 3498 0 1089
+
+Q 6 3848 * 3069 3876 * 4934 * 2790 5489 * 5496 * 1554 5637 * 4856 5044 3380 * * 6
+ 57 4685 * 1667 546 540 1680 4078 1053 1147
+
+N 7 * * 3878 * 4514 * * 3554 4009 3988 * 4574 3662 * * 1636 2636 3750 * * 7
+ 33 5462 * 1000 1000 * 0 4205 1015 1018
+
+N 8 4434 * 3136 1358 * 5054 * * 3934 * 4722 6074 3422 3446 5119 4798 * 5345 * 5195 8
+ 0 * * * * 956 1046 4237 0 1073
+
+K 9 3794 * 3832 1764 * 5366 * * 1928 * * 4209 * 5286 3849 3758 4234 * * * 9
+ 0 * * 0 * 0 * 4251 1000 1015
+
+T 10 4454 * 3838 1772 5998 5856 * 4898 5798 4989 * 4198 * 5947 2913 2293 3874 * * * 10
+ 18 6328 * 1000 1000 * * 4640 1015 0
+
+L 11 4973 * 6272 4477 4394 * * 3049 2727 1905 4958 * 3666 * * * 4535 2633 * 6861 11
+ 95 3977 * 1273 771 * * 4806 1142 0
+
+A 12 4001 * 2629 1224 * 6952 * 5741 2675 6166 * 4489 * 4379 5238 6658 6413 6673 * * 12
+ 0 * * * * * * 4936 0 0
+
+A 13 2497 * 5245 2424 * 5826 * 5013 1930 4061 5824 6715 7047 4106 3980 5133 5879 4735 * * 13
+ 60 5522 5716 1594 580 * * 4936 1034 0
+
+M 14 7033 * * * 3838 * 6937 3006 5518 1890 1972 * * 4870 6515 * 3072 4645 * 4672 14
+ 51 5243 6875 925 1079 606 1544 4934 1058 1049
+
+K 15 * * 6018 4151 5048 6372 3788 6431 3191 5656 5974 * * 4444 2012 5929 5576 4485 5415 1957 15
+ 0 * * * * 1461 651 4935 0 1044
+
+N 16 3829 * 4908 2266 5814 * 4347 * 1882 * 7338 3126 6007 3689 3474 5842 6021 6196 * * 16
+ 0 * * 3225 163 * 0 4939 1077 1013
+
+F 17 6727 * 6023 4740 1380 * * 6244 3798 4320 4528 * * 4746 3179 6032 5495 5870 2883 4746 17
+ 24 * 5952 * * * 0 4979 0 1013
+
+A 18 2442 * * * 4121 * 5908 3679 7046 1970 5590 * * * * 3481 2674 2900 * * 18
+ 0 * * * * 1096 910 4980 0 1074
+
+E 19 4069 * 3300 1473 * * 6188 6599 2585 5164 * 3910 * 3819 4364 5155 4834 * * 6510 19
+ 0 * * * * * 0 4980 0 1021
+
+Q 20 3651 * 6172 4805 * 5186 5734 6768 1406 4918 6249 4254 4417 4162 3430 4272 3881 5369 * * 20
+ 0 * * * * 1201 824 4980 0 1021
+
+Y 21 5660 * 4448 4553 3664 * 6515 3659 6956 4861 * 5451 * 5453 * 6750 5929 2129 * 1395 21
+ 0 * * 0 * 0 * 4977 1000 1000
+
+A 22 1038 3627 6586 * * * 6853 3873 * 5240 * 5710 * 3336 * 4423 4759 3101 * * 22
+ 0 * * * * * * 4981 0 0
+
+K 23 4504 * 3235 1420 * 5893 6282 6918 2190 6049 * 5387 * 3987 4005 5320 6119 6040 * * 23
+ 0 * * * * * * 4981 0 0
+
+R 24 4063 * * 4897 * 7197 6216 6559 1901 4622 6626 6119 3140 2546 2823 3714 5458 * * 5795 24
+ 0 * * * * * * 4981 0 0
+
+T 25 4469 * * * 3423 4322 5162 * 2372 3783 * 4266 * 6268 4664 2182 2784 5694 * 5132 25
+ 0 * * * * * * 4981 0 0
+
+D 26 * * 5196 6065 * 272 * * 5641 * * 3682 6141 6745 6931 * * * * * 26
+ 0 * * * * * * 4998 0 0
+
+T 27 * * * * 3596 * * 5641 * 4371 6559 7072 * 6308 * * 2129 * 2725 1189 27
+ 0 * * * * * * 4998 0 0
+
+Y 28 4306 4964 * 4991 2932 * 3908 5105 2463 * 6578 5395 * 6601 3473 6884 4425 2807 7218 2851 28
+ 0 * * * * * * 4945 0 0
+
+F 29 * * * 5475 1594 * * 4416 * 1310 5844 * * 6660 * * 4974 4493 * 3432 29
+ 0 * * * * * * 4945 0 0
+
+C 30 * 2846 6942 * * * 4122 * * * * 564 * * * 4568 3986 6187 * * 30
+ 0 * * * * * * 4945 0 0
+
+S 31 4702 * * 3612 * 6977 * 4811 4298 * 7208 4416 762 6826 5388 3909 * 4547 * * 31
+ 0 * * * * * * 4945 0 0
+
+D 32 * * 392 5115 * 6194 * * * 6404 6022 3302 * 4774 * 5706 * 6470 * * 32
+ 0 * * * * * * 4945 0 0
+
+L 33 4752 7145 4858 2178 * 7371 * 6239 2364 4300 5209 * 3619 3969 3152 4184 4912 5608 5706 5422 33
+ 0 * * * * * * 4945 0 0
+
+S 34 4565 * 2784 1292 * 4118 * 6279 4321 * 5706 4933 * 4306 6304 2771 6194 6900 * * 34
+ 0 * * * * * * 4945 0 0
+
+V 35 5142 * * * 2783 * 5588 2551 5522 3387 2897 * * 4520 7218 6578 5082 1857 * 5878 35
+ 22 * 6066 * * * * 4945 0 0
+
+T 36 4296 * * * * * * 5410 5415 3458 * 3588 5746 * 6729 5952 1492 1713 * 5427 36
+ 0 * * * * * 0 4913 0 1013
+
+A 37 3073 * 2573 2523 4895 6941 6561 * 3151 3288 4129 4860 * 6819 4657 3739 4365 * * 6896 37
+ 0 * * * * * 0 4913 0 1013
+
+V 38 2924 * 3048 3944 3530 3473 * 4220 6256 4759 5674 4291 6278 6457 4393 3114 4697 3487 * 5941 38
+ 0 * * * * 0 * 4913 0 1013
+
+V 39 5422 5961 * * 6023 * * 2918 * 1561 6833 * * * * * 6141 1148 * * 39
+ 0 * * * * * * 4945 0 0
+
+I 40 4473 * * * * * * 2054 4135 1673 4789 * * 3570 4518 * 6022 2606 * * 40
+ 0 * * * * * * 4945 0 0
+
+E 41 4786 * 5536 1560 * * 6910 * 2534 3739 4047 4911 * 4116 3155 4782 5139 5722 * * 41
+ 0 * * * * * * 4945 0 0
+
+G 42 4141 * * * * 350 * * * * * 5706 * 3861 * 4220 5878 * * * 42
+ 0 * * * * * * 4945 0 0
+
+L 43 * * * 4207 * * * 3721 * 254 * * * 4979 * * * * * * 43
+ 0 * * * * * * 4945 0 0
+
+A 44 1473 4557 * * * * * 4289 4124 2066 6066 6296 * * * 5060 3530 3243 * * 44
+ 0 * * * * * * 4945 0 0
+
+R 45 4082 * 4959 3145 6942 * 5317 4037 2976 6197 4599 3987 * 4266 1830 6485 3694 5159 * 7177 45
+ 0 * * * * * * 4945 0 0
+
+H 46 * * * * * * 2374 5148 4396 5133 5706 832 * 6893 6186 * 4024 * * 4702 46
+ 18 * 6342 * * * * 4945 0 0
+
+K 47 6075 * 6656 2722 * 4966 * 5776 879 4640 * 5886 * 5341 3875 4947 * 5533 6328 6218 47
+ 111 * 3759 * * * 0 4998 0 1009
+
+E 48 5949 * 2347 1837 * 6803 * 4878 3648 3501 4399 3955 * 4034 3608 6107 * 5220 * * 48
+ 0 * * * * 2437 295 4948 0 1296
+
+E 49 * * 4200 2755 * * 7165 4067 2597 5442 4381 * * 4770 1449 5601 4164 6040 * * 49
+ 0 * * * * * 0 4981 0 1235
+
+L 50 * * * * 3204 * 4160 6274 6291 2474 6239 5018 * * * * * * 6256 804 50
+ 0 * * * * * 0 4981 0 1235
+
+G 51 * * 5199 * * 145 * * 4615 * * 5191 * * * * * * * * 51
+ 0 * * * * 2472 287 4981 0 1235
+
+S 52 2991 * 5952 3838 5790 5252 6141 4163 2134 6113 * * * * 3713 4551 * 6201 * 1742 52
+ 0 * * * * 0 * 4998 0 1186
+
+P 53 4533 * 6762 5329 6066 3435 * 6086 5878 6194 2701 6578 1715 5122 2217 * * * 4790 5564 53
+ 0 * * * * * * 4945 0 0
+
+L 54 2951 5429 * * 3235 6304 * * * 1930 * 6833 * 6187 * 3563 6922 * * 1511 54
+ 0 * * * * * * 4945 0 0
+
+C 55 * 0 * * * * * * * * * * * * * * * * * * 55
+ 0 * * * * * * 4945 0 0
+
+P 56 * * * * 5422 * * * * * * * 34 * * * * * * * 56
+ 0 * * * * * * 4945 0 0
+
+C 57 * 0 * * * * * * * * * * * * * * * * * * 57
+ 0 * * * * * * 4945 0 0
+
+R 58 * * * * 3038 * * * 4969 6342 * 5025 * 3440 547 6279 * * * 6166 58
+ 0 * * * * * * 4945 0 0
+
+H 59 4430 * 5026 5181 2895 5961 3353 3014 5422 1645 3536 5243 6337 * 5461 6088 * 6702 * 6939 59
+ 18 * 6342 * * * * 4945 0 0
+
+Y 60 2241 * 6056 4789 6210 5892 * 5089 * 4196 * 6282 3954 7035 3705 4545 5210 2655 * 2104 60
+ 1003 997 * 0 * 0 * 4998 2623 1009
+
+E 61 * * 3664 2995 * 1156 6251 6943 6698 6319 7139 4521 3100 5520 4992 4905 4840 6080 * * 61
+ 265 3524 3627 0 * * 0 4919 1248 1016
+
+D 62 * * 964 4459 * 3837 * 5827 4286 * * 3518 * 6788 3938 4708 3773 5064 * * 62
+ 26 * 5827 * * * 0 4938 0 1338
+
+K 63 5987 * 3771 3855 5453 5317 * 4814 1317 6115 * 4780 5051 5249 2442 6206 5537 5426 * 7109 63
+ 0 * * * * 621 1515 4926 0 1389
+
+E 64 5514 * 4233 973 * 4559 5908 * 3217 * * 4418 6426 4055 3831 5417 4776 * * * 64
+ 15 * 6581 * * 1518 619 4877 0 1112
+
+A 65 2717 * 6001 1768 * * * 7095 2194 4315 * 4995 4483 3818 5060 6048 5055 4987 6796 * 65
+ 23 * 5956 * * 1876 459 4911 0 1096
+
+E 66 5926 * 1042 1506 * * * * 5333 * * 6602 5400 6340 5858 * 5113 * * 5136 66
+ 34 * 5428 * * * 0 4877 0 1112
+
+V 67 4292 * 3408 5297 * * * 4061 2572 3006 * 5108 * 4466 2653 6701 4981 2488 * 5392 67
+ 668 * 1433 * * * 0 4930 0 1198
+
+K 68 2889 * 6421 4687 * 5701 * 4608 1367 4293 2971 6270 * * 6067 3246 4193 * * * 68
+ 470 * 1848 * * * 0 4549 0 2415
+
+N 69 2854 * 4056 3114 * * 3368 * 2307 3669 * 5155 * 4680 3665 3512 5231 4372 * * 69
+ 47 * 4958 * * * 0 4089 0 2830
+
+T 70 3201 * 2690 * * 3069 * 2266 5050 4043 * 4216 * * 2308 4765 5274 * * * 70
+ 158 * 3272 * * 866 1147 4053 0 2859
+
+F 71 * * 1129 4547 3606 * * * 6406 * * 3510 * * 4578 * 4060 3358 * 3073 71
+ 148 * 3358 2807 222 787 1250 4676 1000 2008
+
+W 72 5934 * * * * * * 1191 * 6466 5459 5805 * * 2953 * * 3993 1811 5914 72
+ 0 * * * * 870 1143 4735 0 1715
+
+N 73 * * * 6816 6824 * * 1028 3770 3191 4721 2929 5564 * * * * 3074 * * 73
+ 0 * * * * 0 * 4764 0 1310
+
+C 74 * 0 * * * * * * * * * * * * * * * * * * 74
+ 0 * * * * * * 4946 0 0
+
+P 75 4294 * * * * * * 5756 * * 4341 * 182 * * * * * * * 75
+ 0 * * * * * * 4946 0 0
+
+C 76 * 0 * * * * * * * * * * * * * * * * * * 76
+ 0 * * * * * * 4946 0 0
+
+V 77 4480 * 2311 7191 * 7369 * 2701 3245 4664 6000 5587 5086 5460 6140 6019 4706 1929 * 5451 77
+ 561 1633 * 1968 426 * * 4946 2133 0
+
+P 78 4484 * 1351 3304 6453 * * * * * * * 1803 6331 * 6264 6165 * * 3006 78
+ 483 1813 * 2137 372 * * 4946 1917 0
+
+M 79 6633 * * * 3399 * 5665 1687 * 3207 2028 * * * * * * 2460 * 5080 79
+ 0 * * * * * * 4946 0 0
+
+R 80 2773 * 6622 2721 6713 * 4139 6633 3082 * * 4574 3338 3522 2296 6114 4475 7310 * * 80
+ 0 * * * * * * 4946 0 0
+
+E 81 5487 * 3437 1034 * * 6986 4348 4191 6000 5419 5907 * 3994 3464 6317 4696 5318 * * 81
+ 117 3682 * 2416 299 * * 4946 1271 0
+
+R 82 5993 * 3515 2548 3369 6577 * * 4242 6481 * 6000 * 5602 2609 7171 * 6373 * 1576 82
+ 146 3373 * 2234 345 * * 4946 1403 0
+
+K 83 * * 6713 * * 569 * * 1855 * * 6885 * 6601 6310 6826 * * * * 83
+ 0 * * * * * * 4946 0 0
+
+E 84 2875 5636 5456 2926 5063 7124 3173 * 6845 * 5253 5698 * 5403 4017 2594 4017 4078 * 3118 84
+ 0 * * * * * * 4946 0 0
+
+C 85 * 0 * * * * * * * * * * * * * * * * * * 85
+ 0 * * * * * * 4946 0 0
+
+H 86 * * * * 3723 * 825 * 5419 * * * * * * * 5993 * 3859 1990 86
+ 0 * * * * * * 4946 0 0
+
+C 87 * 0 * * * * * * * * * * * * * * * * * * 87
+ 0 * * * * * * 4946 0 0
+
+M 88 3114 * 5736 6994 * 1388 6884 * 5248 3678 2402 4130 * 4563 5570 5702 5660 * * 6140 88
+ 0 * * * * * * 4946 0 0
+
+L 89 * * * * 5993 * * 3097 * 205 * * * * * * * * * * 89
+ 0 * * * * * * 4946 0 0
+
+F 90 * * * * 891 * * * * * * * * * * * * * * 1117 90
+ 0 * * * * * * 4946 0 0
+
+L 91 * 3097 * * 3213 5706 * 4425 6278 3028 * 6065 * 6172 * * 5605 1208 6260 3666 91
+ 0 * * * * * * 4946 0 0
+
+T 92 5806 6568 5193 * * * 4229 * 2858 5948 * 3331 5675 4715 4714 1817 2014 * * 6607 92
+ 0 * * * * * * 4915 0 0
+
+P 93 3844 * 3781 2483 * 4963 6233 * 1894 * * 5279 2382 4510 4461 4934 6459 6218 * * 93
+ 14 6715 * 0 * * * 4933 1018 0
+
+D 94 3560 * 1955 1191 * 5417 6680 * 4289 * * 4709 6349 5113 7166 5416 5314 * * * 94
+ 0 * * * * * * 4874 0 0
+
+N 95 * * 5656 5674 4760 2917 6734 3078 5829 4942 * 2426 * * 5434 6497 * 2255 4286 2919 95
+ 0 * * * * * * 4696 0 0
+
+D 96 2227 * 3340 2671 6071 * * 3730 6096 4238 * 4903 4683 * * 3209 3194 4380 * 4835 96
+ 0 * * * * * * 4652 0 0
+
+F 97 5483 * 2730 3657 2220 5395 * * 2559 * * 4753 * 3512 3738 3620 5710 * * 4661 97
+ 0 * * * * * * 4575 0 0
+
+A 98 2368 * * 4345 * 1670 * * 3434 * * 4357 2950 * 5993 3882 * 3498 * * 98
+ 56 * 4723 * * * * 4472 0 0
+
+G 99 4492 5452 4830 2684 * 2055 * 4670 2335 3910 * 4973 * * * 2596 * * * * 99
+ 0 * * * * * 0 4090 0 1018
+
+D 100 * * 2757 3237 * 5214 * 3456 2601 * * 4908 4024 2588 * 4371 2702 * * * 100
+ 0 * * * * * 0 3350 0 1018
+
+A 101 4243 * 4264 2203 * * * * 3933 1740 * 4908 * * * 2384 3504 * * * 101
+ 0 * * * * 0 * 3350 0 1018
+
+Q 102 * 4919 * 2043 * * * * 3539 * * * * 1038 3151 * 4690 * * * 102
+ 0 * * * * * * 3472 0 0
+
+D 103 * * 5282 2243 * * * * 3373 3959 * 4690 * 1973 3206 * 2319 * * * 103
+ 0 * * * * * * 3472 0 0
+
+I 104 * * * * * * * 513 * 3292 * * * 3955 5225 * * 3237 * * 104
+ 0 * * * * * * 3472 0 0
+
+P 105 4628 * 4136 3626 * * * * * * * * 1811 3334 * 2045 3139 3615 * * 105
+ 0 * * * * * * 3472 0 0
+
+M 106 4145 * * 3376 3096 * * 5339 4119 2339 5207 3339 2945 * * 5175 3897 4577 * 4109 106
+ 0 * * * * * * 3456 0 0
+
+E 107 * * 1569 2146 * * 4283 * 2839 * * 4904 * * * 2679 5299 5015 * * 107
+ 41 5175 * 3000 193 * * 3456 1029 0
+
+T 108 * * 3755 1377 * * * 4810 5175 5177 * * 5015 5303 3589 3934 2200 * * 5185 108
+ 0 * * * * * * 3456 0 0
+
+L 109 * * * 3934 4109 * * 2237 * 1690 * * * * 3589 * * 1880 * * 109
+ 0 * * * * * * 3456 0 0
+
+E 110 5175 * 3934 1857 * * 4991 4635 3177 3071 * * 4145 4959 3465 * 5299 5339 * 3318 110
+ 172 4151 4157 1000 1000 * * 3456 1016 0
+
+E 111 4718 * 3045 1573 * 4506 * * 1751 * * * * 3687 4334 * * * * 4784 111
+ 0 * * * * * 0 3281 0 1021
+
+V 112 4762 * * 2972 * 4285 4545 * 2402 2914 * 3137 * 3791 * * 3772 3817 * 3481 112
+ 0 * * * * 0 * 3074 0 1021
+
+K 113 3595 * * 3456 * 3603 * 2998 4821 3051 4717 4805 * * * 3550 1976 * * 4346 113
+ 0 * * * * * * 2998 0 0
+
+A 114 2058 * * 2437 * 3301 * * 3407 3380 * * * 2377 * 3461 * * * * 114
+ 0 * * * * * * 1948 0 0
+
+S 115 * * * * * 970 * * * * * 2728 * * * 1562 * * * * 115
+ 0 * * 0 * * * 1626 1015 0
+
+M 116 * * * * * * * * * 2663 248 * * * * * * * * * 116
+ 0 * * * * * * 1626 0 0
+
+A 117 1652 * * * * * * * 1652 * * * * * * 1459 * * * * 117
+ 0 * * 0 * * * 1466 0 0
+
+//
+�HHsearch 1.5
+NAME db724bcc82eacb181edae3af47403f31
+FAM
+FILE db724bcc82eacb181edae3af47403f31
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:16:31 2013
+LENG 52 match states, 52 columns in multiple alignment
+FILT 100 out of 110 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC
+>ss_conf PSIPRED confidence values
+9853021000003687899997762588647789999997797641659839
+>Consensus
+mxxxxxxxxxxxxxPxkxfitxGxgxxxtxLxaFdxALxdAgIxnxNLVxVS
+>db724bcc82eacb181edae3af47403f31
+MNAEINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS
+>gi|212224474|ref|YP_002307710.1| pyruvoyl-dependent arginine decarboxylase [Thermococcus onnurineus NA1]gi|212009431|gb|ACJ16813.1| pyruvoyl-dependent arginine decarboxylase [Thermococcus onnurineus NA1]
+MYNRLIrekgKEEVgMsWTTPKRAFIGAATAEGGTKLNAFDNALLKLGIGNVNLVKLS
+>gi|188585514|ref|YP_001917059.1| Pyruvoyl-dependent arginine decarboxylase [Natranaerobius thermophilus JW/NM-WN-LF]gi|179350201|gb|ACB84471.1| Pyruvoyl-dependent arginine decarboxylase [Natranaerobius thermophilus JW/NM-WN-LF]
+-----------LKTLKYFKLVTGTGEGNTSLTAFDKALLNAEVGNFNLLKVT
+>gi|291575308|gb|ADE10233.1| pyruvoyl-dependent arginine decarboxylase [Actinoplanes liguriensis]
+---------------DQIPVVRAIGRGTTSLSAFHDALVTMECGFYNLVRLS
+>gi|229819355|ref|YP_002880881.1| Pyruvoyl-dependent arginine decarboxylase [Beutenbergia cavernae DSM 12333]gi|229565268|gb|ACQ79119.1| Pyruvoyl-dependent arginine decarboxylase [Beutenbergia cavernae DSM 12333]
+---------------PTIRISTGTGSGRTTLSAFDAALRSAGVADFNLLRLS
+>gi|76802875|ref|YP_330970.1| hypothetical protein NP4484A [Natronomonas pharaonis DSM 2160]gi|76558740|emb|CAI50333.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
+---------------GRIRIVWGTATAPTAMASYDAALAAANVHNYNLVAVS
+>gi|52549420|gb|AAU83269.1| conserved hypothetical protein [uncultured archaeon GZfos27B6]
+-------------IPDAFFVTSGAGMDFEQANAFDLALHDAGISECNLVEVS
+>gi|302341587|ref|YP_003806116.1| arginine decarboxylase, pyruvoyl-dependent [Desulfarculus baarsii DSM 2075]gi|301638200|gb|ADK83522.1| arginine decarboxylase, pyruvoyl-dependent [Desulfarculus baarsii DSM 2075]
+------------LVPKYIYLTKGKGEHKEKLASFEAALRDAGIAAQNIVEVS
+>gi|119719781|ref|YP_920276.1| pyruvoyl-dependent arginine decarboxylase [Thermofilum pendens Hrk 5]gi|119524901|gb|ABL78273.1| arginine decarboxylase [Thermofilum pendens Hrk 5]
+-------------LPKKYFVTKGKGLSnVSPLMAFNNALREAGIHQLNLVPVS
+>gi|34540667|ref|NP_905146.1| hypothetical protein PG0903 [Porphyromonas gingivalis W83]gi|188994902|ref|YP_001929154.1| hypothetical protein PGN_1038 [Porphyromonas gingivalis ATCC 33277]gi|334146632|ref|YP_004509559.1| hypothetical protein PGTDC60_0831 [Porphyromonas gingivalis TDC60]gi|34396981|gb|AAQ66045.1| conserved hypothetical protein [Porphyromonas gingivalis W83]gi|188594582|dbj|BAG33557.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277]gi|333803786|dbj|BAK24993.1| hypothetical protein PGTDC60_0831 [Porphyromonas gingivalis TDC60]
+-------------IPNTFFITKGSGESDLELHagSYHMALFDAGISDFNIMTYS
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * 3129 175 * * * * * * * * * 1
+ 0 * * * * * * 1967 0 0
+
+N 2 * * 3244 * * * * * 3268 * * 1210 * 2943 * * * * * 2131 2
+ 0 * * * * * * 1967 0 0
+
+A 3 3191 * 3140 * * * * * 3394 * * 1583 * * * 2943 2197 * * * 3
+ 0 * * * * * * 1967 0 0
+
+E 4 * * 3129 2289 * * * * 3244 * * 3140 * * 2131 2097 * * * * 4
+ 0 * * * * * * 1967 0 0
+
+I 5 2097 * * * * * * 1653 * 1545 * * * * * 3244 * * * * 5
+ 384 * 2097 * * * * 1967 0 0
+
+N 6 * 2700 * * * * * 1923 * * * 2804 * * * 1187 * * * * 6
+ 780 1260 * 2241 343 * 0 1818 1167 1114
+
+P 7 * 2725 * * * * * * 1923 * * * 773 * * * * * * * 7
+ 0 * * * * 0 * 1818 0 1114
+
+L 8 * * * 2247 * * * 782 * 3466 3092 * * * * * * * * * 8
+ 0 * * * * * * 1865 0 0
+
+H 9 * * * 2247 * * 573 3092 * * * * * * * * * * * * 9
+ 0 * * * * * * 1865 0 0
+
+A 10 3015 * * * * * * * * * 1677 3836 * * * 1397 * 3135 * * 10
+ 552 1654 * 0 * * * 2081 1129 0
+
+Y 11 * * * * * * * 3775 * * 608 * 2216 * * * * * * 4173 11
+ 126 3577 * 0 * * * 2335 1138 0
+
+F 12 * * * * 1749 * * * * 806 * * * * * * * * 3632 4328 12
+ 0 * * * * * * 2405 0 0
+
+K 13 5816 * * 5654 3130 * * * 3146 2324 3231 3955 2011 * 6476 * 4358 5554 * 4831 13
+ 42 5112 * 0 * * * 3152 1015 0
+
+L 14 3618 * * * * * * 1911 6422 3298 * * * * * * 2122 1692 * * 14
+ 0 * * * * * * 3362 0 0
+
+P 15 4827 * * * * * * * * 4968 * * 100 * * * * * * * 15
+ 0 * * * * * * 3362 0 0
+
+N 16 * * 4236 * * 5457 * * 1683 * 3657 2467 5566 6279 3112 3743 2961 * * * 16
+ 0 * * * * * * 3693 0 0
+
+T 17 5635 6754 * 4204 * * 5653 5752 1325 * 6151 5743 * 4543 3168 5345 2202 6648 * 4645 17
+ 0 * * * * * * 3693 0 0
+
+V 18 3769 6889 * * 2406 * 6062 1535 * 4948 4717 * * * * * * 2615 * 2878 18
+ 0 * * * * * * 3693 0 0
+
+S 19 3778 * * * 833 * 5832 5878 5241 * * * 4924 * 3247 3151 4524 * * 6587 19
+ 0 * * * * * * 3693 0 0
+
+L 20 * * * * 2065 * * 1935 * 1992 5400 * * * * * 5291 2330 * * 20
+ 0 * * * * * * 3693 0 0
+
+V 21 5184 * * * * 6044 * 6266 5752 5878 6848 * * * * 5315 845 1651 * * 21
+ 0 * * * * * * 3693 0 0
+
+A 22 1967 * * * 5112 5158 * * 2068 * * * * 6726 2890 2502 4043 6027 4266 * 22
+ 0 * * * * * * 3693 0 0
+
+G 23 2716 * * * * 238 * * * * * * * * * * * * * * 23
+ 0 * * * * * * 3693 0 0
+
+S 24 2924 5283 * 4661 6516 * 6027 3447 3621 * * 6834 * * 5226 2321 2807 2150 * * 24
+ 0 * * * * * * 3693 0 0
+
+S 25 2031 5418 6197 * * 602 * * * * * * * * * 4073 * * * * 25
+ 0 * * * * * * 3693 0 0
+
+E 26 * * 4187 1305 6122 6648 5243 4381 5439 5059 4825 6163 * * 3012 4292 4030 3276 * * 26
+ 0 * * * * * * 3693 0 0
+
+G 27 2551 * 4825 * * 1210 1951 * * * * * * * * 3507 6040 * * * 27
+ 27 5732 * 0 * * * 3693 1012 0
+
+E 28 * * 2812 2961 4692 4959 6511 * 2099 * * 4632 2492 6243 4355 4018 4704 5732 * 6062 28
+ 0 * * * * * * 3693 0 0
+
+T 29 6872 * 2940 2735 * * 5159 4456 6027 4488 * 3836 * * * 3558 1243 * * * 29
+ 0 * * * * * * 3693 0 0
+
+P 30 3243 * * 2668 6900 * 5417 * 1849 * 5583 * 2710 3915 3558 4072 4806 * * 7051 30
+ 0 * * * * * * 3693 0 0
+
+L 31 4825 * * * * * * 5345 5291 309 3414 * * * * * 6220 * * * 31
+ 0 * * * * * * 3693 0 0
+
+N 32 2155 * * 4640 * 6908 3584 * * * 5732 1752 * 4632 * 3637 2664 4334 * * 32
+ 103 3854 * 1000 1000 * * 3693 1111 0
+
+A 33 946 * * * * * * * * * * * * * * 1101 6094 * * * 33
+ 0 * * * * * * 3693 0 0
+
+F 34 * * * * 308 * * * * * * * * * * * * * * 2380 34
+ 0 * * * * * * 3693 0 0
+
+D 35 * * 823 1671 * * 3292 * * * * 5732 * * * * * * * * 35
+ 0 * * * * * * 3693 0 0
+
+G 36 2196 * 4924 5497 5191 4414 * * 5745 2534 2919 2016 * 6543 5014 * * 5072 * 6615 36
+ 0 * * * * * * 3693 0 0
+
+A 37 66 5575 * * * * * * * * * * * * * 5415 * * * * 37
+ 0 * * * * * * 3693 0 0
+
+L 38 * * * * * * * * * 0 * * * * * * * * * * 38
+ 0 * * * * * * 3693 0 0
+
+L 39 3003 * * * 5716 * 5635 5116 * 1545 * * * * 1440 * 6197 4924 * 4337 39
+ 0 * * * * * * 3693 0 0
+
+N 40 3703 * 1116 2771 * * * * 3278 * * 3801 * 4826 5779 4210 4924 * * * 40
+ 0 * * * * * * 3693 0 0
+
+A 41 225 * * * * 5198 * * * 6044 4324 * * * * 4272 * * * * 41
+ 0 * * * * * * 3693 0 0
+
+G 42 * 7061 6220 4277 * 568 6649 * 4756 * * 3698 * 6279 3240 6601 * * * * 42
+ 0 * * * * * * 3693 0 0
+
+I 43 6243 4924 * * * * * 411 * 5832 * * * * * * * 2442 * * 43
+ 0 * * * * * * 3693 0 0
+
+G 44 2298 6040 * 2211 * 1323 2979 * * * * * * * * 4675 * * * * 44
+ 0 * * * * * * 3693 0 0
+
+N 45 5435 5625 3084 4825 4924 5479 5630 * 2814 * 4834 1132 5991 4531 6433 6279 * * * 6543 45
+ 0 * * * * * * 3693 0 0
+
+V 46 5345 3435 * * 2609 * * 5003 * 3413 6027 * * 5033 * * 3656 2245 * 1956 46
+ 0 * * * * * * 3693 0 0
+
+N 47 * * * * * * * * * * * 0 * * * * * * * * 47
+ 0 * * * * * * 3693 0 0
+
+L 48 * * * * * * * 3048 * 186 * * * * * * * * * * 48
+ 0 * * * * * * 3693 0 0
+
+I 49 * * * * * * * 2267 * 3573 3549 * * * * 5832 5328 785 * * 49
+ 0 * * * * * * 3693 0 0
+
+R 50 4334 * * 3978 * 6044 6392 * 2585 5479 * 6580 4175 6139 1856 3424 2660 5291 * 4734 50
+ 0 * * * * * * 3693 0 0
+
+I 51 * * * * * * * 2991 * 3029 4899 * * * * * * 624 * 3854 51
+ 0 * * * * * * 3693 0 0
+
+S 52 * * * * * * * * * * * * * * * 51 4839 * * * 52
+ 0 * * 0 * * * 3693 0 0
+
+//
+�HHsearch 1.5
+NAME dbea14172bdf1965e97ce49c46d0fd07
+FAM
+FILE dbea14172bdf1965e97ce49c46d0fd07
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:22:59 2013
+LENG 133 match states, 133 columns in multiple alignment
+FILT 102 out of 457 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCEEECCCCCC
+CCEEEEECCCCEEEEEEEECCCCEEEEEEEEEC
+>ss_conf PSIPRED confidence values
+9765138998739999999489989999999947997998654588788973179996799978999999996878945999999998997231664889
+929998569999999999817858999999989
+>Consensus
+GxxxddgxxxxixxIxixxxxxxxIxxiqxxYxxxgxxxxxxxxGxxxxgxxxxxxxlxxxxEyItxvsGxxgxxxxxxxIxsLxFxTnkxxxxxfGxxx
+GxxFxxxxxxxxivGFxGrsgxxldsiGvyxxx
+>dbea14172bdf1965e97ce49c46d0fd07
+GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTS
+GTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
+>gi|53791723|dbj|BAD53318.1| hypothetical protein [Oryza sativa Japonica Group]
+------------DLISVQIKSKDTIDHLTFTYkdtKGNQQT---V-SWGG------------------tmgddhlaevSGSVGPFpsqkq----------
+ACTVNSLTFVTS-EGRRGgp--wgkrgkddkDFKVPVGKGRIVGFYARADVFISAIGFYIR-
+>gi|242048128|ref|XP_002461810.1| hypothetical protein SORBIDRAFT_02g008430 [Sorghum bicolor]gi|241925187|gb|EER98331.1| hypothetical protein SORBIDRAFT_02g008430 [Sorghum bicolor]
+-SLWEMeGKSQRLENVTIY--HIGAVEGIQFSYvDEDGQIRTTGTWGRVHpSPLYKTEIKFG-PSEFVKQITGAARH---GGWLSQFKIVTSHKTYGPFG
+VDAGaPSFSYTVReDELVVGFFANADTFVQSIGVCT--
+>gi|15224348|ref|NP_181902.1| jacalin-like lectin domain-containing protein [Arabidopsis thaliana]gi|2281096|gb|AAB64032.1| hypothetical protein [Arabidopsis thaliana]gi|52354293|gb|AAU44467.1| hypothetical protein AT2G43740 [Arabidopsis thaliana]gi|330255220|gb|AEC10314.1| jacalin-like lectin domain-containing protein [Arabidopsis thaliana]
+-LEWEEKGRNMISSIYVAF-DKDTINSIQFSYCQNGGHVVSKKYGMSDaqkqkygsyNGRFHVMfvfalvtddhvktnlcniqVRLN-DDEFVTGLSAIY
+L----CKGITNLNIHTNQGKHGPICDRysSsknimdNYKVEIdvKIRDRrEFGGFFGSFDNygTLTSIGIYVC-
+>gi|38347662|emb|CAE04702.2| OSJNBa0041M06.4 [Oryza sativa Japonica Group]
+----KEGvN----------Y-FICGVPG-----hCAAGMKL--RVVADE-FP-SADTK------------------------------------------
+-----------------------------------
+>gi|294659253|ref|XP_461608.2| DEHA2G01562p [Debaryomyces hansenii CBS767]gi|199433820|emb|CAG90055.2| DEHA2G01562p [Debaryomyces hansenii]
+----------KVTKVRVY--HGGALDGVRFYFNSsdngetKNAPkvplrnylhkltnkssdssenRnssqgvnpKVVTIGHE-KS-HYSDYDIG-PGEYI
+TKFHIRNG-----AWIDAIQIETNTgKKSPMFGNPNGghlSTLESPGQGFHVIGMYGYVGSWLDGLGIIY--
+>gi|328835778|dbj|BAK19070.1| PL-toxin I [Plotosus lineatus]
+---TNNGS--TVRKIWVWA-AGWQIKSMKIWL-TDGREQ---QFGNP-AGN-HSEFEFQ-DGECMTSLSLWG-N-GAGTRLGAIKFKTNRSrEFfahmTD
+WG--LKTEYPIDVGSGICVGVTGSAGSDIDCLGFMF--
+>gi|301122501|ref|XP_002908977.1| conserved hypothetical protein [Phytophthora infestans T30-4]gi|262099739|gb|EEY57791.1| conserved hypothetical protein [Phytophthora infestans T30-4]
+GNEFSDQasvaAGQSIGSITIRA--GERVDGISLEVtaPKAAT----FSHGGS-GG-KANTLTLA-KEEYITSMEAHWGEKKGRTRIFYLSFGTSAGNTV
+AAGSQTESKNTVTAPkGFQLGGFFGQDGNEIDKLGAI---
+>gi|313231270|emb|CBY08385.1| unnamed protein product [Oikopleura dioica]
+GSKWSDVQykSRPVRRIVLW--CGAFLDAIKVDYDIKlGI--GSQKHGTG-RDHQRENVHIH-QGDHVQQITGKTCDFYGQVILTEIRIHTEQgRVHGPF
+GSYNepereLMPFTVGGPHCRLQYLDGK--------------
+>gi|145490355|ref|XP_001431178.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124398281|emb|CAK63780.1| unnamed protein product [Paramecium tetraurelia]
+GDDFDDGMIDKITRVKIQY-NKQNIVAIGIFYEQRQIYK-DHNFCAN-SLskfyfyVWEEEFVIE-KDDYLQQVTGTYD----GMYITSLQFVTYNGQSM
+HFKAsCLGESFNIEN-------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 4066 * * * * 89 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 6155 0 0
+
+K 2 5424 * 2639 5723 * 5118 5668 5703 3031 5420 6250 2958 * 4911 4811 2112 3361 4492 * * 2
+ 0 * * * * * * 6342 0 0
+
+A 3 2844 * 4223 2801 5624 5802 4741 5882 4451 3051 5961 4156 2590 * 3994 3826 * 6029 * 5807 3
+ 0 * * * * * * 6560 0 0
+
+F 4 * 5723 * * 1515 * 5985 * * * * * 5713 4882 5027 * 5339 * 1080 4883 4
+ 42 * 5116 * * * * 6696 0 0
+
+D 5 5440 * 1097 2965 * * * * 6850 6061 * 4390 * * * 2437 3495 5894 5665 * 5
+ 0 * * * * 1035 965 6721 0 1062
+
+D 6 * * 838 3149 5708 * 4949 3947 * 4966 4254 5369 * 6068 * 4459 * * * 4562 6
+ 53 4804 * 0 * 0 * 6721 1097 1000
+
+G 7 * * 3796 5924 * 989 * 4589 4514 * * 3151 * 5537 3877 * 4449 3748 * * 7
+ 493 1789 * 1184 837 * * 6726 2564 0
+
+A 8 2721 5854 4256 5807 5726 4102 5306 5034 3519 5996 4917 4512 3331 4379 * 2763 3444 4026 * * 8
+ 240 3380 4130 1001 999 * * 6766 1473 0
+
+F 9 * * * 5710 2326 4064 3805 5749 * * * 4117 2537 * 4442 2860 4257 5862 6072 2905 9
+ 87 4087 * 1044 957 2448 292 6832 1243 1449
+
+T 10 * * 2461 4294 5992 2914 6229 * 4869 * * 3162 4237 3373 3997 3995 2980 4513 * 6133 10
+ 0 * * * * 492 1792 6840 0 1351
+
+G 11 5155 * 4053 5288 5343 2218 4701 6366 3128 6433 6041 4579 2870 5314 3182 4527 5728 3965 * 6114 11
+ 18 6346 * 0 * * 0 7201 1000 1033
+
+I 12 5448 6664 6160 * 5400 6539 * 1557 6535 2529 * * 5395 5109 * * * 1588 * 6725 12
+ 20 6154 * 0 * * 0 7277 1023 1033
+
+R 13 6729 * 6183 4694 * 6400 * * 2617 5660 * 6380 * 5416 1607 2853 2435 4146 * * 13
+ 0 * * * * * 0 7319 0 1033
+
+E 14 3803 6127 * 3316 * 4003 5379 4124 2432 2852 6178 5625 6451 4396 3636 2815 5484 6930 * * 14
+ 0 * * * * * 0 7319 0 1033
+
+I 15 6760 * * 4643 * * 6261 965 6667 3249 4811 * * 6591 * * 4954 2106 * * 15
+ 0 * * * * * 0 7319 0 1033
+
+N 16 4301 5584 5140 5062 4558 5435 6161 4458 3089 6602 * 4889 * 3728 2691 3663 2859 3812 5391 4594 16
+ 60 5107 6389 1076 928 * 0 7319 1177 1033
+
+L 17 6688 * * * 3888 6355 * 1411 * 2961 4477 6506 * * * * * 1513 * * 17
+ 39 * 5241 * * * 0 7292 0 1241
+
+S 18 4535 7217 6439 6253 5171 4305 3930 * 4219 6405 * 5039 * 4609 2849 2938 2654 * 3282 3137 18
+ 374 5658 2260 595 1565 267 2564 7238 1085 1472
+
+Y 19 3859 * 4897 5522 3502 5435 3976 2965 6131 3222 * 6495 * 5193 * 3688 5068 2934 6491 2612 19
+ 1694 6223 562 1000 1000 * 0 7035 1004 2721
+
+N 20 * 4602 * * 3196 4505 3849 4449 4613 * * 3421 * * 1913 4495 * 4798 2813 3875 20
+ 0 * * * * 444 1916 5148 0 6069
+
+K 21 4123 5108 2715 * 7395 2784 2788 * 5282 6243 * 3366 6197 5548 * 2223 4758 * * 4531 21
+ 17 6404 * 2322 322 64 4529 7313 1000 2715
+
+E 22 4430 * 3710 4484 6456 1214 * 5001 4247 4657 * 4488 4915 5900 6898 3122 5494 5753 6924 * 22
+ 35 5377 * 1339 726 * 0 7328 1141 1000
+
+T 23 3642 6085 2596 3461 5916 3452 6036 * 4661 4944 5405 3409 * 4629 6277 3094 3689 5061 4853 5412 23
+ 43 5086 * 550 1658 0 * 7328 1270 1000
+
+A 24 2677 4792 6316 5565 4380 3240 5258 3872 5786 5418 6198 4623 * 5329 3348 5000 3698 3093 * 3621 24
+ 25 6613 7100 2000 415 * * 7328 1000 0
+
+I 25 * * * * 6407 * * 1267 * 2276 * * 6376 * * * 5785 1627 * 6341 25
+ 0 * * 0 * 0 * 7327 1000 1000
+
+G 26 4806 6596 1624 5884 5127 6355 3634 4912 3868 6464 * 3641 7598 4780 4832 4175 3605 4407 * 4767 26
+ 0 * * * * * * 7328 0 0
+
+D 27 2123 4412 5335 * 6379 1808 6206 6758 * 5687 6796 6578 * 6860 6659 2032 5154 6342 * 4794 27
+ 7 * 7598 * * * * 7328 0 0
+
+F 28 6375 * * * 3516 * * 1098 * 2371 4251 * * * * * * 2479 * 6918 28
+ 14 * 6651 * * * 0 7317 0 1033
+
+Q 29 5260 * 6816 2979 * 4466 * 5490 2884 6492 * * * 1440 3680 2812 5287 * * 6731 29
+ 0 * * * * * 0 7318 0 1150
+
+V 30 5784 4527 * * 1262 5721 * 3416 * 3322 * * * * * 6178 6268 1879 * 6598 30
+ 43 * 5084 * * 1081 923 7318 0 1150
+
+V 31 * 6622 3511 3147 5484 6324 5599 5184 3327 6755 5473 4476 6126 5056 4078 3039 2602 3753 4918 4936 31
+ 53 5730 5851 1585 585 * 0 7298 1073 1321
+
+Y 32 * 6252 * 5719 3275 * * 6249 * 4117 * * * * * 5005 6110 5342 6549 488 32
+ 814 1462 3875 392 2070 1155 860 7291 3982 1480
+
+D 33 3598 5652 1531 3348 * 2713 * 5628 5200 * 6414 3774 6181 7035 6193 4684 4462 4669 * 6671 33
+ 110 4700 4829 604 1549 567 1622 7186 1348 1829
+
+L 34 3907 * 4399 5044 * 4016 5645 4736 2404 3891 * 3372 * 3562 4358 4954 3186 4454 6685 4254 34
+ 206 4263 3625 2131 374 1366 708 7342 1366 1503
+
+N 35 2938 6845 2099 6151 * 3211 * * 4508 6035 * 2432 * 4777 4578 3585 3988 6404 * 5363 35
+ 83 6192 4576 0 * 1276 769 7151 1011 2115
+
+G 36 5224 6475 4950 4886 * 583 * 5897 5274 * * 3795 6334 5186 * 4105 6003 * * * 36
+ 126 3782 6475 1336 728 3229 163 7208 1654 2012
+
+S 37 4867 * 3648 3811 * 4812 5475 4063 2549 6674 7548 4932 * 2465 4216 3872 2843 5412 6373 * 37
+ 90 6431 4358 1336 728 2640 252 7218 1082 1987
+
+P 38 4893 * 6312 4134 5481 4276 5320 3499 5350 4513 6181 3783 2845 6356 3337 3374 3622 3596 * 4510 38
+ 187 5352 3369 4321 74 1289 759 7146 1077 2201
+
+Y 39 4996 * * 3471 3283 * 4191 2934 4210 3556 * * 6324 4970 3335 5138 4850 2346 * 4384 39
+ 402 3741 2570 1443 662 1690 535 7105 1572 2464
+
+V 40 4825 6261 * 3810 * 5091 6586 5353 3858 4362 * 5982 5196 4311 5184 3210 2295 3375 2920 4743 40
+ 69 * 4420 * * 1992 418 6805 0 3204
+
+G 41 2977 5502 4478 5355 * 2158 * 5977 6291 * 5354 6015 6154 5230 5475 1972 3783 3843 * 5132 41
+ 108 * 3788 * * 1326 734 6904 0 2968
+
+Q 42 3136 * 4283 3884 6033 2307 5354 6240 5023 4674 * 4993 3163 4065 3953 4349 4448 3644 * * 42
+ 74 * 4318 * * 483 1813 7013 0 2641
+
+N 43 4026 4396 5447 4355 6687 6227 5683 4168 2705 3095 5554 4751 3737 3732 3559 4402 4635 4650 * 5063 43
+ 57 5101 6662 1892 453 662 1441 7169 1146 1830
+
+H 44 * * * * 3143 6340 1457 5735 5164 3780 6348 6741 5323 * 4101 6133 * 4528 2832 3511 44
+ 0 * * * * 364 2164 7246 0 1353
+
+K 45 5985 6367 * * * 138 * * 6345 * * 6047 * * * 6309 * * 5415 * 45
+ 44 5477 7029 0 * * 0 7316 1115 1003
+
+S 46 4720 * 4033 5249 * 1217 6711 6579 4380 6291 6236 4833 6367 6473 4958 2920 3396 5629 6322 * 46
+ 30 * 5620 * * * 0 7323 0 1091
+
+F 47 3838 6234 4634 4333 6270 3454 5479 6499 4422 4847 6558 3043 4309 5350 3246 2833 3334 4748 * 5731 47
+ 1916 * 444 * * 2179 360 7301 0 1296
+
+I 48 4450 * 2923 * * 3121 4750 3632 4602 4233 * * 3986 * 3431 3491 * 3701 3013 4329 48
+ 859 1477 3483 2196 355 90 4051 5668 1873 5998
+
+T 49 3685 5800 5750 6801 5079 1467 * 6491 4555 6895 * 4077 5442 5185 4549 3179 2820 6788 * 6655 49
+ 139 4393 4491 785 1253 2054 397 7249 1310 1545
+
+G 50 5323 5879 5018 * 5284 595 6260 4458 * 4250 * 7124 5972 6512 5553 4208 6860 6599 * * 50
+ 598 6177 1619 2585 263 1434 667 7200 1034 1840
+
+F 51 3884 * 3413 4814 5889 4301 4795 3579 4990 3933 * 3363 6021 * 4899 2542 2993 4698 5881 5670 51
+ 345 4681 2525 2077 390 100 3906 6855 1136 3928
+
+T 52 4912 * 4568 3237 6066 3943 6565 * 3031 5310 5461 3259 5033 3361 3459 2845 4168 6080 6141 6542 52
+ 36 6351 6314 0 * 293 2442 7147 1001 2141
+
+P 53 4058 6251 7050 2822 4208 6536 3928 6184 4400 4225 6707 * 3076 4138 4321 3373 3278 4749 * 4039 53
+ 33 * 5449 * * 2106 381 7289 0 1276
+
+V 54 5104 6883 3486 3147 * 4916 5262 5313 3474 6875 6115 3585 6659 3692 4500 2854 3262 3750 * 4993 54
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+
+I 56 5031 * 6727 6499 2049 * 6944 2005 7570 2978 4891 * * * * * 6377 2199 * 4202 56
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 0 * * * * 1785 495 7298 0 1287
+
+T 72 3981 5222 * * 3028 4864 5681 4968 5454 5022 * 5764 * 5516 6165 4880 3051 3012 6481 1718 72
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+
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+
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+
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+
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+
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+
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+ 12 6898 * 2462 289 0 * 7335 1070 1000
+
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+ 0 * * * * * * 7334 0 0
+
+N 89 * * 4328 5467 * 6800 6409 * 5822 5484 * 887 * 6626 * 2065 4581 * * 4826 89
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+
+K 90 5027 * 4479 5512 * 6795 4943 * 1359 3154 4931 4277 * 3083 4697 * 4096 5223 * 4932 90
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+
+K 91 4686 * 4828 * 5159 1711 * * 3067 * * 3652 * 3725 2015 5315 4806 6675 * * 91
+ 83 4157 * 0 * 0 * 7322 1503 1075
+
+T 92 4119 * 5498 4212 * * * * 3537 * * 4599 6273 4081 2371 3483 1700 3709 * * 92
+ 50 4889 * 0 * * * 7334 1241 0
+
+Y 93 * 6469 * 6337 3539 * 3680 4684 * 4512 * 5736 6479 6866 6679 2012 3427 5420 6924 1696 93
+ 49 4911 * 1267 775 * * 7297 1223 0
+
+G 94 5644 * 5056 4364 4918 1262 4594 * 5043 3520 6373 4975 3490 6688 * 3759 5560 4186 * * 94
+ 58 * 4671 * * * * 7297 0 0
+
+P 95 4078 * 5334 4446 4744 5150 6265 4989 4789 5893 4981 6754 1222 6817 4347 4520 3885 4411 6676 6453 95
+ 29 5649 * 1304 749 0 * 7245 1172 1321
+
+Y 96 5297 4397 * 6212 1246 4931 * 4498 6282 5343 5544 5490 6267 * * * * 4878 4515 2040 96
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+
+G 97 * 6170 * * * 122 * * 6318 * * * * 5706 6323 5431 * * * * 97
+ 148 3991 4859 0 * 738 1320 7238 1460 1136
+
+V 98 4497 4626 4307 4988 5486 3426 * 4504 3863 4970 * 2826 6326 4359 4564 3248 2722 4977 * 4643 98
+ 140 3431 * 1136 875 * 0 7184 1755 1315
+
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+ 158 3266 * 598 1559 368 2149 7184 1834 1315
+
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+ 121 3631 * 1978 422 1206 820 7281 1706 1067
+
+G 101 4286 * * 5016 * 542 5421 * 5020 6458 6554 4825 6477 5985 6732 4374 5399 * 6484 * 101
+ 184 3064 * 1261 779 * 0 7242 2023 1149
+
+T 102 5136 * 4352 3795 * 4851 5558 * 3753 * 4933 4035 5658 3945 4173 3414 1635 4142 * 6136 102
+ 90 4390 6302 2296 328 0 * 7242 1571 1149
+
+P 103 3840 * 4013 4177 6289 * 5202 5301 2969 * * 4380 2110 4407 4176 3274 3568 6600 * 4654 103
+ 50 * 4865 * * * 0 7276 0 1020
+
+F 104 * * * * 317 * * 6718 * 5031 * 5469 * * * 5552 5643 6158 6293 3907 104
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+
+N 105 6163 5196 5025 2983 * * 5312 4872 4806 4876 * 3564 6068 5747 4571 1712 3502 3200 * 6656 105
+ 32 * 5498 0 * 876 1135 7285 1000 1059
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+L 106 3651 6591 * 4337 3689 * 6100 2434 6305 2125 * * 5664 * * 4310 4209 2824 6232 3996 106
+ 139 3808 5595 248 2662 1227 804 7263 1576 1184
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+P 107 4858 * 4579 4073 * 4363 6095 6172 3420 * 6615 5174 1424 3776 * 4600 2933 6768 * 5123 107
+ 209 4712 3371 0 * 932 1072 7261 1223 1257
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+I 108 2671 * * 5195 5970 4105 * 3663 6406 2755 4432 5251 6376 6679 * 3519 5238 1878 6277 6686 108
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+
+E 109 3357 * 5423 2944 * 3841 * 6136 3893 4690 6446 3391 2150 4019 4280 5225 5881 5069 * 4634 109
+ 173 3146 * 546 1666 386 2089 7111 1806 2284
+
+N 110 4119 * 2292 4135 * 1802 5430 6870 4196 6047 * 3201 4576 5694 * 3643 5568 6303 * 6739 110
+ 122 3625 * 467 1853 597 1561 7200 1635 1246
+
+G 111 5707 4396 5042 4175 5544 1359 3793 * 5042 5389 * 4138 6792 5436 4468 3616 6939 5672 5329 4589 111
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+
+L 112 4202 5536 6322 3750 * 4610 4166 4469 2697 5432 * 4999 * 3101 3403 3065 3810 3998 * 5480 112
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+I 113 * 6043 * * 3233 * * 1239 * 2469 * * * * * * 6245 1938 * * 113
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+
+V 114 3644 * * * 6443 4128 6894 3166 5524 3648 6287 * * 5608 * 3752 * 937 * * 114
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+
+G 115 4453 * * * 6305 263 * * * * * * * 6707 5986 4329 * * * 4904 115
+ 23 5986 * 459 1877 0 * 7259 1131 1000
+
+F 116 4436 * * * 336 * * 4105 * 4128 5754 * * * * * * 5175 * * 116
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+
+K 117 5286 6500 5039 6375 1477 5072 2583 * 6277 4608 * 6721 * 6320 5400 4190 5386 6136 5358 2756 117
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+G 118 3843 * * * * 181 * 5680 * * 6316 * * * * * * 5969 * * 118
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+
+S 119 6609 * 6673 * 4543 6267 5075 * 3829 5784 * 3910 * 5300 1114 2470 5172 6230 * 5043 119
+ 33 5452 * 0 * * 0 7219 1091 1035
+
+I 120 1675 3612 5468 4948 5527 6813 * 6207 * * * * * 6518 * 1691 3910 4080 * 4068 120
+ 17 6457 * 1114 894 0 * 7194 1130 1035
+
+G 121 4332 * 2817 6765 * 954 * 6199 6469 * * 5422 * 4980 6151 2866 4269 * * * 121
+ 118 3665 * 339 2254 * * 7215 1603 0
+
+Y 122 3863 4776 2389 4621 * 4637 6637 * 5225 5338 * 3574 4785 4276 * 2623 4386 4928 4077 3516 122
+ 94 4233 6630 353 2203 * * 7215 1363 0
+
+W 123 4558 4446 4812 3916 3179 4197 5002 4477 6249 3396 * 6719 * 5745 4122 4873 5345 4699 4234 2154 123
+ 0 * * * * * 0 7217 0 1019
+
+L 124 6620 6347 * * 5508 * * 2037 * 1138 5647 * 6633 6252 * * 6538 2297 * * 124
+ 0 * * * * * 0 7217 0 1019
+
+D 125 6862 * 955 4889 * 6530 4796 6693 5509 * * 2982 * 4990 4588 4242 4403 4937 * 5019 125
+ 0 * * * * 0 * 7217 0 1019
+
+Y 126 1512 5975 * * 6060 3556 * * 4480 6630 * 5521 * 3925 5382 1641 4926 * * 6218 126
+ 0 * * * * * * 7215 0 0
+
+F 127 * * * * 3356 * * 939 * 1878 * * 6630 * * * * 3901 5696 6332 127
+ 0 * * * * * * 7215 0 0
+
+S 128 5092 * 5913 6266 * 229 * * * * * * * 6253 6808 4670 * * 6310 6151 128
+ 0 * * * * * * 7215 0 0
+
+M 129 2601 * * 6531 2337 6973 * 3017 * 4285 5250 * * * 5473 * 6332 1499 * 5125 129
+ 0 * * * * * * 7215 0 0
+
+Y 130 4594 6417 * * 4834 * 3591 3439 * 4869 5897 5633 * * 5920 * 5317 3893 * 845 130
+ 16 6474 * 0 * * * 7094 1003 0
+
+L 131 * * * * 2405 * * 3352 * 2719 4707 6060 * * * 6149 4348 2062 4072 2776 131
+ 27 5777 * 2322 322 0 * 6918 1000 1003
+
+S 132 2888 4040 5770 3821 * 4965 4672 * 3079 3697 5348 5989 4584 4795 2750 3345 6269 4242 * 5842 132
+ 0 * * * * * * 6211 0 0
+
+L 133 * * * * * * * * * 558 * * * * * * * 1640 * * 133
+ 0 * * 0 * * * 2015 0 0
+
+//
+�HHsearch 1.5
+NAME dea447cd63c9d8c162d6bcafb1cbb851
+FAM
+FILE dea447cd63c9d8c162d6bcafb1cbb851
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:33:24 2013
+LENG 197 match states, 197 columns in multiple alignment
+FILT 114 out of 165 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEEEECCCEECCEEEEECCEEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCEEEECCCCCCCCCCCC
+CCEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9811799998449767152895099899927636888985675447788988899999985477289999899899997689988982897774126887
+8618858998699817699999999985048876566200037999997677998787884558838999918699999999975599889788789
+>Consensus
+xxxWcxIxYyExxxrVGexfxxxxxxvxIDGfxdxxxxxrfcLgxlxnxxRxxxxxxxRxxIGxGvxLxxxxgxVxxxnxsxxxIFVqSxxxnxxxxxxx
+xtVxKvxpgxxxkvFdxxxfxxxlxxxxxxxxxxxxxlxxxcxiRISFvKGWGxxYxRqxitxxPCWiEixlxxplxxldxvlxxmxxpxxxxxsxx
+>dea447cd63c9d8c162d6bcafb1cbb851
+PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHP
+ATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSIRCSSVS
+>gi|308489650|ref|XP_003107018.1| CRE-DAF-3 protein [Caenorhabditis remanei]gi|308252906|gb|EFO96858.1| CRE-DAF-3 protein [Caenorhabditis remanei]
+--RWGVVSYYEEGDCYIER-ECYRGNFHIDSgFI--ISEQRLSLGLIQNPSRSTMAFKIRKAMIDGIRFSYKtDGSVWLQNNMRLPIFVTSGYLDdQCPG
+IRVNKVHKLYGHAKVKVFGFTRVKQIIRdrlyskqmaRLYLQqnGNrnpmFEVYhripliaiqrearvttdSLVKYCCVKVSFGKGFGDAYPeRPIVSQC
+PVWLELKINSAFDYMDAILNDLEN---------
+>gi|308455180|ref|XP_003090150.1| hypothetical protein CRE_23794 [Caenorhabditis remanei]gi|308266234|gb|EFP10187.1| hypothetical protein CRE_23794 [Caenorhabditis remanei]
+-GYWCSVQlndcktmvsWREINLikaylksfQKGKPFLTRNMEFVVDSLETSVVSddKRMALmGLpMSEKGKHNSI---KTSFKDGIKVYCTGGTVKVSV
+LSDVTIFVQSPFWNHANGQDLAAVTRLGSnqprPVIFTVFDFEQFKTHLERAKQHPPTdEMNeFLQSICGFNVSVSKGFGPDYGNRTIFETCCWLSIKFT
+DPLLLFDKYYRQYRLAPDEINS--
+>gi|312377233|gb|EFR24116.1| hypothetical protein AND_11529 [Anopheles darlingi]
+-EIWAKVIVFERNRRVAKAY-ARAPVLTINGSDDGFDGmsdgsfsspvaefpwandvekwlmmseglthqvhslyssavptghglsisrslrvtaalrwd
+pgilgvtkvqrpfvrsvvmFPIGLCGFDNPMRDHKTDEVKRHVGQGVKIKMDdAGNILIRRYSKSNVYVKSTASQpNEETAIGADILKLPGQAiesekIV
+KLFDMKKFQSNVNRELRRAYPDRRRLETQCLSAIAFVKS------ENDILDCPMWVLIINVVAMDMLKSKLppgkssalgiiftskYQMNSPYDVTKSV-
+>gi|221125810|ref|XP_002162815.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
+-SGWCRVDCYERQHHVAT-FRMDEPVICIDGIHPVSDKHRISFAGLPTRSEDLKVLKVKSCIGKGVQLHQDErQNLWATRLGKNPIFVRGHTLCPELVK-
+--LNGKLTQGVPMKVLDTSAFKEYMKKECeTSGL--VdDELRDKIMsrlkVCMSFIKD------TVVDEETPCWFEVWLI--------------------
+----
+>gi|313232554|emb|CBY19224.1| unnamed protein product [Oikopleura dioica]
+--DWARVSFYQKKMKRGPDFIARSRSFTIDGMTGPRCtSTRMPLGIRTLGLRgCPDTDRLLETVGHGIVIENKENCVLLRNISPVSVYVKSCQID-----
+--STPIRIPAAHEVDLFFYDEFSRSIAER--NTLADLWQLREHCTLFISFGLCWGSStVQVESVDGLPCWLKLDLQHCWRELNVAVEQ------------
+>gi|167517705|ref|XP_001743193.1| hypothetical protein [Monosiga brevicollis MX1]gi|163778292|gb|EDQ91907.1| predicted protein [Monosiga brevicollis MX1]
+---VASITYHERDSPLAQFY-LNQPIFNISCFRPVEDNtTTVSLSDIDNPCRDSRTEKIRRFIGSGLQVSIRRKCLYVTRLSRNPVFLKNYQSPStvSDS
+ILLRENGELPDGAEVCLFDYQVFSKEIARMPAE------LALKMATVSLAFVRT------GEFDDKIPCWIRIRMGDALRM-------------------
+>gi|313217634|emb|CBY38686.1| unnamed protein product [Oikopleura dioica]gi|313218130|emb|CBY41437.1| unnamed protein product [Oikopleura dioica]gi|313231875|emb|CBY08987.1| unnamed protein product [Oikopleura dioica]
+-KPWCNVSVYECNNKIevystaktqlGVEYKVADanryaKKEAMKG-KNATQSDVFDLSSISNVNRSTDTWDLLEKLQRGLTLVYDREKRIVSChnNcKN
+LKIYVLSYLMNVECGKHEQSLIQVGPGASRVVYDGYQLAKTIEG-VNSTT--QNDLQKwalisqyanyFTVFRISFQP-WGPEYTKKRLTDCDLWLEIFM
+REYLDWINQIEHH------------
+>gi|71985803|ref|NP_492746.2| Temporarily Assigned Gene name family member (tag-68) [Caenorhabditis elegans]gi|38422270|emb|CAB70215.2| C. elegans protein F37D6.6, confirmed by transcript evidence [Caenorhabditis elegans]gi|38422275|emb|CAB70221.2| C. elegans protein F37D6.6, confirmed by transcript evidence [Caenorhabditis elegans]
+-RSWAKMTRYERKEQIGDTVWLHGPFAAV-GVLSKSvhDAQLECSpWDLKNEV---SFALIRQadPIG-----STNPEDVWLYNSGTRPLFL-SMTPNVS
+ST--KDTLRRLSPGYCIRVHRGEVSASAPASERTKVrRPSKDPALAQQNLVISVGKGWGPNYSRLYLTDIPCRYEVSF----------------------
+---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+P 1 3983 * 3654 * * 6008 * * * * * * 597 4643 4374 5535 4649 5014 * * 1
+ 24 5925 * 1585 585 * * 3920 1000 0
+
+A 2 3769 * 3073 2660 * 3435 * * 2793 7673 7008 5200 4041 3478 4028 3001 5158 * 6922 * 2
+ 16 6513 * 1463 650 * * 5555 1053 0
+
+F 3 3588 5462 5333 4741 4140 4530 3189 3037 6471 * * 3441 3671 6134 6251 4294 3947 4113 * 3087 3
+ 0 * * * * * * 5907 0 0
+
+W 4 * * * * * * * * * 6212 * * * * * * * 5834 67 6143 4
+ 0 * * * * * * 5970 0 0
+
+C 5 1982 735 * * * 3672 * 6038 * 4246 * * * * * * * * * * 5
+ 0 * * * * * * 5970 0 0
+
+S 6 5077 * 7863 * * 5467 4467 * 2301 * 7048 3695 * 4014 4124 1664 2975 4863 * 6143 6
+ 8 * 7539 * * * * 5970 0 0
+
+I 7 6981 * * * * * * 1198 6138 2821 5660 * * * * * * 1393 * * 7
+ 0 * * * * * 0 5967 0 1000
+
+S 8 1443 7852 5734 * 5292 5650 6576 3094 * 4409 * * * 3325 * 2799 4031 4525 * 4611 8
+ 29 5664 * 3170 170 * 0 5967 1076 1000
+
+Y 9 * 5766 * * 4325 * * 6088 * 4640 * * * * 4984 * 5825 3719 5670 450 9
+ 0 * * * * * 0 5990 0 1000
+
+Y 10 * * * * 2714 * 4480 * * 6541 4199 5703 * 6158 5670 * * * 2030 1185 10
+ 0 * * 2000 415 0 * 5990 1000 1000
+
+E 11 5954 * * 119 * * * * 5240 * * * * 4773 * * * * * * 11
+ 18 * 6354 * * * * 5992 0 0
+
+L 12 * 5472 * 3113 4679 5006 4693 5664 3491 1325 5243 * * 6214 2922 5930 6156 6143 * 5114 12
+ 21 6143 * 0 * 0 * 5970 1023 1034
+
+N 13 4287 4985 2957 6652 * 2824 5198 5954 4093 * * 1615 * 5767 3268 4817 4290 * * * 13
+ 0 * * * * * * 5992 0 0
+
+Q 14 5729 * 4899 3190 * 6917 4029 7307 4616 4359 5717 3812 * 2993 3421 3071 2433 4075 * * 14
+ 75 4748 6181 2640 252 * * 5992 1182 0
+
+R 15 * 4515 * * 5230 * 4496 * 3217 * 6486 * 5137 2674 897 4495 * * * * 15
+ 0 * * * * 0 * 5968 0 1025
+
+V 16 5831 * * * * * * 2239 5671 3498 5142 * * 6599 4802 * * 798 * 6307 16
+ 33 5476 * 3322 152 * * 5992 1079 0
+
+G 17 2805 * 5292 * * 420 * 6307 5831 * 5954 * * 6181 * 6448 * 6354 * * 17
+ 0 * * * * * * 5992 0 0
+
+E 18 5063 * 3698 1315 * * * * 2651 6354 * * 3683 4597 2815 6229 5767 5220 * * 18
+ 67 6358 4899 0 * * * 5992 1045 0
+
+T 19 2459 6412 5640 5413 4229 * 6273 4824 4403 2508 4586 * 3808 4731 4560 7263 2502 4140 * 7543 19
+ 70 * 4391 0 * 0 * 5891 1045 1243
+
+F 20 5256 * * 6653 738 6734 * * * * * * * * * * * 4696 4986 1811 20
+ 202 * 2935 * * 0 * 5910 0 1239
+
+H 21 4656 6756 4638 3906 5412 * 2612 4126 2299 5444 * 5844 3331 3784 4353 4715 5096 4911 5519 6259 21
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+ 0 * * * * * 0 4030 0 1000
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+C 193 * 1462 * * * * * 1604 * * 3989 * 4091 * * * 3570 3288 * * 193
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+//
+�HHsearch 1.5
+NAME deee1e6a65f0898c57dcde00fc15c870
+FAM
+FILE deee1e6a65f0898c57dcde00fc15c870
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:16:44 2013
+LENG 126 match states, 126 columns in multiple alignment
+FILT 111 out of 624 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 5.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
+CCCCCCCCCCCCCCCCHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9377366689975679788624465699999999990999451107499999999999984436321789999999799999864354328852997798
+76727765567764420112444689
+>Consensus
+mvxixxxxlxxxkxvxxaLxxIxGIGxxxAxxIcxxlgixxxxxxxxLxxxqixxlxxxlxxxxxixxdLxxxxxxxIxrlxxIxsyRGxRHxxGLPVRG
+QRTxTNarTxkxxxxxxxxxxxxxxx
+>deee1e6a65f0898c57dcde00fc15c870
+MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRG
+QRTRTNARTRKGPRKTVAGKKKAPRK
+>gi|225680884|gb|EEH19168.1| 40S ribosomal protein S13 [Paracoccidioides brasiliensis Pb03]
+------------------------------------marFYVHETAKIGDLGNKQILSLTAALSE-MKIENDLRRQILDDIQRLKDIGTVRACGPILvag
+pAASMRGlvslvfpfaDGYTLQNKT-----aiklnrldrrlgikgpr------------
+>gi|290559361|gb|EFD92694.1| ribosomal protein S13 [Candidatus Parvarchaeum acidophilus ARMAN-5]
+IVRIADTDLDGSKAVKDLLRSIPGISFSYSNALMKVLNIPKGKKLQDLDEKELNTLKEALSDPfkYkiphwlfnwrrddetgldyhLLSNDLRSKTTMRI
+QKIKTSRSYRGYRHSFNYKLRGQKVKSrganvHGRV-----------------
+>gi|15790213|ref|NP_280037.1| 30S ribosomal protein S13P [Halobacterium sp. NRC-1]gi|169235942|ref|YP_001689142.1| 30S ribosomal protein S13P [Halobacterium salinarum R1]gi|13124533|sp|Q9V2W4.1|RS13_HALSA RecName: Full=30S ribosomal protein S13P; AltName: Full=HS13gi|6172227|dbj|BAA85895.1| ribosomal protein HS13 [Halobacterium salinarum]gi|10580671|gb|AAG19517.1| 30S ribosomal protein S13P [Halobacterium sp. NRC-1]gi|167727008|emb|CAP13794.1| ribosomal protein S13 [Halobacterium salinarum R1]
+FVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESVTDAVDSFtEHapawlanrqndfytgenqhiTGTDVELTRDQDi-
+NRMRMIR-sYKGIRHER-gQKVRGQRTKSTGRTE----------------
+>gi|27661504|ref|XP_232915.1| PREDICTED: ribosomal protein S18-like [Rattus norvegicus]gi|109476520|ref|XP_001058861.1| PREDICTED: ribosomal protein S18-like [Rattus norvegicus]
+-LQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELTEDKVERVITIMQNPrqYEipqkgvrdgrcsqvPANGLDNKLREELERLKKI
+RAHRGLRHFWGLHVHCQLTMSHG--CRGYTVGASKKKR----
+>gi|7525003|ref|NP_050101.1| ribosomal protein S13 [Dictyostelium discoideum]gi|74833664|sp|O21038.1|RT13_DICDI RecName: Full=Ribosomal protein S13, mitochondrialgi|2627258|dbj|BAA23575.1| ribosomal protein S13 [Dictyostelium discoideum]gi|4958906|dbj|BAA78083.1| ribosomal protein S13 [Dictyostelium discoideum]
+----GKIELNNEKQIIGELkKKIKGVNFHIAQKVIMLSGNVASIKGNKLIQSEEKQIVDILQRFkglYSHNYGLKEEALAKIRRIEN--VYRYIRVRQGY
+PVRG-RTKSNANTVKRQ-------------
+>gi|187764102|ref|YP_001876551.1| ribosomal protein S13 [Dictyostelium fasciculatum]gi|160688810|gb|ABX45225.1| ribosomal protein S13 [Dictyostelium fasciculatum]
+--------LNKRKKVLFEIkKKIAGMGESMTKRLCSMCGFLPMTYVSKISTKGGLRLMRIYKS-FKGLSDYSYYvyrKRFNQRRS-KERAYRSQRFTKGY
+PV-SQRTRTNGKIAS---------------
+>gi|72161465|ref|YP_289122.1| hypothetical protein Tfu_1061 [Thermobifida fusca YX]gi|71915197|gb|AAZ55099.1| conserved hypothetical protein [Thermobifida fusca YX]
+--------VIGKMKVSALLESLPGVGKVRAKQIMERLNIAESRRIRGLGANQRAALESEFG---------------------------------------
+--------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 5243 0 0
+
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+ 21 6092 * 0 * * * 5443 1053 0
+
+R 3 * * * 6296 3318 * 3777 4714 * 4530 * 6122 * 4443 1108 * * 6157 * 2364 3
+ 13 6790 * 3478 136 * * 5464 1061 0
+
+I 4 5319 * * * 5578 * * 802 * 2857 3993 6656 * * * * 5973 2701 * * 4
+ 0 * * * * * * 5464 0 0
+
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+ 0 * * * * * * 5530 0 0
+
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+
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+ 15 6627 * 1357 714 * * 5530 1062 0
+
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+ 39 5247 * 0 * * * 5564 1077 0
+
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+ 0 * * * * 0 * 5696 0 1077
+
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+ 0 * * * * * * 5774 0 0
+
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+ 0 * * * * * * 5777 0 0
+
+N 12 * * 3714 3515 * 5469 4107 6795 2951 6262 * 1779 6074 4598 4166 3645 3045 * * * 12
+ 0 * * * * * * 5777 0 0
+
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+ 53 4789 * 717 1353 0 * 5810 1153 1200
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+ 0 * * * * * * 5858 0 0
+
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+ 146 3381 * 0 * * * 5889 1496 0
+
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+ 0 * * * * 0 * 6006 0 1077
+
+Y 21 3671 * 4272 4260 * 4415 6823 * 2094 * 5587 4078 * 3392 3434 2873 5181 6932 * 3515 21
+ 0 * * * * * * 6072 0 0
+
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+ 0 * * * * * * 6072 0 0
+
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+ 0 * * * * * * 6072 0 0
+
+G 24 5719 * * * * 59 * * * * * * * * * 5566 * * * * 24
+ 0 * * * * * * 6072 0 0
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+I 25 5651 * * * 5788 * * 736 * 2811 5793 * * * * * * 2434 5952 * 25
+ 0 * * * * * * 6072 0 0
+
+G 26 * * * 5651 * 372 * * 4973 * * 2983 * 6091 * 4866 * * * * 26
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+ 0 * * * * * * 6072 0 0
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+ 0 * * * * * * 6072 0 0
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+ 0 * * * * * * 6072 0 0
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+ 0 * * * * * * 6072 0 0
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+ 12 6889 * 2000 415 * * 6072 1000 0
+
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+ 0 * * * * * * 6072 0 0
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+ 0 * * * * * * 6072 0 0
+
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+ 0 * * * * * * 6072 0 0
+
+E 35 3197 6951 3362 3535 * * 5604 * 2532 3808 5526 3439 7008 5096 2900 3425 * 5354 * 4960 35
+ 0 * * * * * * 6072 0 0
+
+K 36 3968 * 4563 4098 6007 7333 * 4346 1978 3922 5793 5700 * 3962 2412 4549 5971 3640 * 5931 36
+ 0 * * 1585 585 * * 6072 1099 0
+
+T 37 2549 3813 * * 3602 * * 4518 * 1304 5113 7285 * * * 4297 3703 4740 6935 5766 37
+ 20 6167 * 1000 1000 * * 6122 1025 0
+
+G 38 5593 * 4615 4194 * 781 6935 * 5013 6218 * 3116 * 4921 4869 4785 * 6935 * 5489 38
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+
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+ 0 * * * * * * 6122 0 0
+
+N 40 5806 6932 1756 6069 5475 4226 2843 * * 4783 * 2624 5878 7148 5501 2892 6930 5099 * 5012 40
+ 24 * 5946 * * * * 6122 0 0
+
+P 41 4308 * 4787 4191 6721 4420 * 4934 3340 3853 * 4862 1365 * 4759 3856 5426 4891 * 5943 41
+ 12 6910 * 4248 78 0 * 6101 1000 1094
+
+A 42 5082 * 3558 4586 4659 4806 4772 * 3773 4410 5808 2109 5893 5694 4333 2874 3179 * 5077 * 42
+ 0 * * * * * * 6122 0 0
+
+T 43 2907 3989 7339 4835 6990 * * 3863 2381 2923 3820 * * 5892 3566 4619 3242 5360 * 5707 43
+ 52 4824 * 916 1089 * * 6122 1186 0
+
+R 44 6873 * * 6505 6605 5181 6082 5466 1754 5055 5691 5061 4506 4924 1709 5775 3502 * 6288 5199 44
+ 13 * 6780 * * * * 6122 0 0
+
+V 45 2870 7450 * * 4416 5033 * 2386 6073 2647 3604 * 6648 * * * 4767 1920 * 5566 45
+ 0 * * * * 0 * 6111 0 1000
+
+K 46 6105 6916 5030 5667 * 1402 4044 5967 2417 * * 4085 7445 5186 4053 3376 * 5893 * 5709 46
+ 35 6664 6167 0 * * * 6122 1000 0
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+L 48 * 6890 * * 5153 * * 3666 * 392 5684 * * * * 5122 * 4103 * 5957 48
+ 12 * 6894 * * 0 * 6087 0 1025
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+ 0 * * * * * 0 6116 0 1006
+
+E 50 4247 * 2085 2390 5661 6982 * 6080 3504 5510 * 3449 3593 4059 5110 4846 4563 6469 * 5916 50
+ 15 6625 * 2000 415 * 0 6116 1000 1006
+
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+ 42 * 5123 * * * 0 6116 0 1006
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+E 52 6928 * 3676 2020 * 5747 4540 6589 4097 5606 * 4681 * 1452 6264 5783 5153 * * 4261 52
+ 0 * * 0 * 456 1885 6103 1119 1186
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+ 519 3251 2344 3665 118 2735 235 6022 1510 1271
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+T 63 * * 3743 5701 3229 * 5170 5779 3913 5576 * 2098 2198 4610 5400 3865 5692 * * 4015 63
+ 802 1230 * 1650 553 195 2985 5743 2695 2440
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+ 246 2676 * 4286 76 2395 304 6025 1762 1191
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+ 197 2972 * 4249 78 * 0 6030 1641 1144
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+ 9 7271 * 2585 263 * 0 6030 1000 1144
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+ 14 6722 * 3907 100 * 0 6015 1027 1210
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+ 29 5668 * 1585 585 * 0 6030 1044 1144
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+ 22 6057 * 2000 415 * 0 6030 1010 1144
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+A 123 3401 * * 3092 * * * 3120 * 2971 * 3020 * 2186 * * * 2305 * * 123
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+//
+�HHsearch 1.5
+NAME e0ba85cb42b528cdde934e6e751de9b2
+FAM
+FILE e0ba85cb42b528cdde934e6e751de9b2
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:02:24 2013
+LENG 138 match states, 138 columns in multiple alignment
+FILT 249 out of 1276 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEEEEHHHCCCCCCCCCCCCCEEECCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCCCCCCCC
+CCCCCCCCCCEEEEECCCCEEECCCCCCEEEEEEEECC
+>ss_conf PSIPRED confidence values
+9513545001101676789999998997999999977753999999999974998946579999999997245789877854889976977998046566
+57899999886999789828865788876748987459
+>Consensus
+xxxlxxxxxxxxxxxxxxxxCpxxwxxxxxxCyxxxxxxxxwxxAxxxCxxxgxxLaxixxxxexxxixxxxxxxWiGlxxxxxxxxwxwxdgxxxxxxx
+wxxxxpxxxxCxxxxxxxxwxxxxCxxxxxxICexxxv
+>e0ba85cb42b528cdde934e6e751de9b2
+MNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSILSPNL
+LTIIEMQKGDCALYASSFKGYIENCSTPNTYICMQRTV
+>gi|260832614|ref|XP_002611252.1| hypothetical protein BRAFLDRAFT_119658 [Branchiostoma floridae]gi|229296623|gb|EEN67262.1| hypothetical protein BRAFLDRAFT_119658 [Branchiostoma floridae]
+------------------PyKCDQ--------CdYSATQKGNLDQHRTNPTGE-------------KTYLCGYRtaGRSYLSLHMRTHTGEKPFkCDECD
+YSvAKKCEESHKAkhtdAKRYKCvecgYRTAymshlSVHMRTHTVWPF---------
+>gi|149637003|ref|XP_001508495.1| PREDICTED: similar to polycystic kidney disease 1-like 2 [Ornithorhynchus anatinus]
+------------------SPRPRARRDRGPPRRPLLVTGMTFAmlPGNATRGGPYGRSAVFRRPRAElrstpgPCRERpAGprAAACPGLSARirgsrgS
+VARPGpgvcggtTWLDESNTSYSNW---PEdpSPAArCGYLDqqSGYRWVaTENCSQELGFICEFE--
+>gi|341894061|gb|EGT49996.1| hypothetical protein CAEBREN_20633 [Caenorhabditis brenneri]
+VAARFDSSSSESCEdshshshgshshehgggggRGANRGCERGWRRFNrpsgGWCIKVAQGQFSQAQAESKCQVEGGTLSGLQDTNEISYITSAalrlfp
+erTGSLWVGAKRTpacssspisascNAMNSFTWTDGSTSGTAgfQWNKNQPDNahsktQQCVVLLASSTqvvtdsWtwntnqlDDVRCVNPggsqqrivR
+GYVCGKRA-
+>gi|268554055|ref|XP_002635015.1| Hypothetical protein CBG13558 [Caenorhabditis briggsae]gi|187028583|emb|CAP32339.1| CBR-CLEC-172 protein [Caenorhabditis briggsae AF16]
+ISQLILVSLMISLATSK--SCLAPASYILGSCFTFINTPMSFWEANSYCEYHSnnawSYLALVESPEQSIWLAKSAtmftsENYWIGVYRPSVIDNFRTI
+LNRYLTFQYFANINPSMNYAVGRKSDGKWETRPEEERFPFVCSYK--
+>gi|241594910|ref|XP_002404410.1| attractin, putative [Ixodes scapularis]gi|215500403|gb|EEC09897.1| attractin, putative [Ixodes scapularis]
+--------------------VGQEGREPAQACQETGLRTGRWMASKRRCLrgRLVNGTQGLVDARENQTDvDQCQQSEssncdkLHNCHACHTEF-HCgW
+QNDHRCYtfVRESAPGMIpGfyLGVSEWL------------------------
+>gi|341874183|gb|EGT30118.1| CBN-CLEC-265 protein [Caenorhabditis brenneri]
+--SAFLLIATVFHSSLAA-SCPTGTKLYNSKCYAALGMDMTRDKALAYCKKTygsYAVLATPLTYAENNFVTEQVQlhanwHTWLEF---VADGTYIVgD
+DGKPPVYTNFAVGEPfsvSVGYCITIGMNGYWYAQPCADSHSALCEFALY
+>gi|260816259|ref|XP_002602889.1| hypothetical protein BRAFLDRAFT_98109 [Branchiostoma floridae]gi|229288202|gb|EEN58901.1| hypothetical protein BRAFLDRAFT_98109 [Branchiostoma floridae]
+----------------------AGRDRR--------ATMSRLVSAGIACWLL---IVTGWGYSFFPMRYLLVlklssgAKLL-----LL--EVTVWP---
+-VVF--FLKNKSVIlGRSHHL------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 6945 0 0
+
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+ 0 * * * * * * 7401 0 0
+
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+
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+
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+
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+
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+
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+
+I 11 3855 6781 * 5562 4456 5336 6719 2980 5254 2360 5171 4902 4100 5822 4022 4724 4139 2557 6675 * 11
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+T 14 2924 5843 6898 4873 5794 4546 * 3350 4885 3683 * 3695 3658 5238 4315 2487 3984 4288 * 6403 14
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+
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+ 41 5172 * 1952 431 698 1382 9488 1473 1657
+
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+
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+C 32 5485 343 7816 4746 7150 * 6994 7299 * 8082 * 7079 * 7803 5388 5857 6256 6116 6796 4912 32
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+D 37 3967 * 4181 3846 5068 4274 4986 5305 3747 4426 5850 3241 3885 4314 4295 3612 3002 4489 * 6809 37
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+
+S 39 3476 * 6906 4047 6689 4248 5744 4922 2660 4302 5290 4760 3142 3735 4373 3653 3530 4977 6879 6270 39
+ 0 * * * * * * 9673 0 0
+
+K 40 3320 7309 6286 4215 5375 4480 5787 6037 3076 2363 3245 6171 6972 4992 3818 3968 4760 4121 * 5396 40
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+N 41 5071 6727 3862 5066 7786 5962 7004 7484 6402 6146 8068 2398 4315 6143 4452 2179 1998 6184 8032 6651 41
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+W 42 5748 * 6680 6614 2633 5892 4072 6243 7995 5365 7949 7895 * 6155 4592 6856 * 6029 1159 2767 42
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+E 44 3485 * 2285 2139 * 3675 5900 6279 3948 4897 6279 4339 6429 4150 5802 4529 4342 6233 6733 6850 44
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+
+S 45 371 5893 * 7795 6520 4867 7572 7280 * 7332 6014 * 7327 7725 6689 3613 6986 7035 * 6823 45
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+Q 46 4151 * 4802 3174 5437 6390 5890 5653 3057 4320 6195 4291 6849 2793 2755 4261 5022 3690 7440 5435 46
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+A 47 3290 7170 3862 3343 4866 5719 6431 4740 3988 5294 5502 3303 8477 3302 3254 3356 4133 5372 * 5540 47
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+S 48 3391 7332 4769 3969 3201 6109 5219 3581 4299 3840 5804 5541 6164 5210 4067 4448 3976 4652 6228 2825 48
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+C 49 8237 88 * * * 6730 * * * * * * * * 6202 6823 5975 * * 6944 49
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+Q 52 4946 * 4839 3441 4404 6250 3451 4526 3741 2570 4209 5009 6528 3399 3848 5444 6332 5213 5735 4039 52
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+N 53 6306 6940 4099 6008 7510 1093 5102 7592 4934 7956 * 2584 6352 4620 4688 4174 * 6353 * 4883 53
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+L 56 7502 * * * 7502 * 7591 4516 * 255 5393 * 6325 6813 * 6525 6399 4876 * * 56
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+L 57 1253 * * * 4908 6055 7349 4485 * 3110 5663 6676 5278 6399 * 6008 5302 1983 * 7834 57
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+K 58 4804 6025 4708 4480 5733 4746 7049 3687 4335 4814 4959 4213 8012 5935 5017 2398 2736 2813 7839 5991 58
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+V 59 4606 * 7789 5433 3644 6606 7895 1427 * 2817 5732 * 3311 * * 6507 5990 2580 * 6735 59
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+ 47 5655 6345 2432 296 * 0 9611 1325 1605
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+ 26 5820 * 4192 81 1781 496 9584 1243 1826
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+ 81 4643 6122 1899 450 1375 702 9575 1678 2244
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+ 147 3364 * 2254 339 2774 228 9597 2675 1490
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+I 132 4772 * * * 4532 * * 1080 * 3073 5287 * * * * 5946 8013 1850 * 7550 132
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+C 133 * 31 * * * * * 6868 * * * * * * 7247 7357 * * * * 133
+ 0 * * * * * * 9433 0 0
+
+M 134 5671 * * 1263 7561 5609 7990 * 2873 6806 4498 7163 * 2031 5942 4739 5736 * * 5638 134
+ 12 7633 8261 0 * * * 9416 1000 0
+
+Q 135 5026 * * 5037 3468 7387 5156 4468 1865 5007 4539 7437 * 3946 2760 4621 4887 3786 * 4175 135
+ 19 6288 * 2793 225 0 * 9415 1093 1000
+
+R 136 4746 * 3658 3445 6468 5718 5318 7262 3006 5584 6973 3587 2201 4851 3257 5439 3767 5855 7034 6047 136
+ 0 * * * * * * 9303 0 0
+
+T 137 1505 6755 6817 * 6289 * 6500 2887 5706 2598 4691 * 4103 * 6751 5427 4246 3264 * * 137
+ 0 * * * * * * 9055 0 0
+
+V 138 * * * * 3641 * * 3003 * 2701 * * 4690 * * * 4627 831 * * 138
+ 0 * * 0 * * * 6875 0 0
+
+//
+�HHsearch 1.5
+NAME e130d30836eaf714deba0688836fbaec
+FAM
+FILE e130d30836eaf714deba0688836fbaec
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:18:57 2013
+LENG 230 match states, 230 columns in multiple alignment
+FILT 134 out of 1359 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCEEEEEEEEC
+CCCCCCEECCCCEEEEEEECCCCCCEEEECCCCCEEECCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCEEE
+EEEEECCCCEEEEEEECCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9299488858996799889998961788889789999907999817999994378840205665762567305887617899625731445899999954
+9876401125515877862244575388608753010697489999965767997599988984157732025684599789999999951204798799
+999948998789999906768999698999
+>Consensus
+xxxxxxpxxxxxxxGxxvxLxCxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxLxIxxxxxxDxgxYxCxvxx
+xxxxxxxxxxxxxxlxvxxxxxxxpxvxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxxxgxyx
+Cxvxxxxxxxxxxxxlxxxxxxxxxxxxxx
+>e130d30836eaf714deba0688836fbaec
+QVQLQQPGAELVKPGASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPGSGYTNYNERFKSKATLTVDTSSSTAYMQLSSLTSDDSAVYYCARKH
+YFYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSIT
+CNVAHPASSTKVDKKIEPRGPTIKPCPPCK
+>gi|94732089|emb|CAK03669.1| novel immune-type receptor 5, allele 2 [Danio rerio]
+---LQLHELEQVESEVKKPLYCLVQNQLVRNEHrLYWFSHGSEEsPPGFI--------HIygNSSKSCVGSSESDCLSPTCMYNLPMKRSRSSKMEMHYC
+ALATC---GQALFGNVSKLNPDAVGSPKI-----------------------------------------------------------------------
+----------------------------------
+>gi|168985092|emb|CAQ09233.1| major histocompatibility complex, class I, C [Homo sapiens]
+----------------------------------------------------------------------------------------------------
+-----------------------HPKTHVTHHPVSD---HEASRR-WNLpevgscggAFWrRAEIHVPCaaRGAARAPHPE-------------------
+-----------------------------------------
+>gi|194039786|ref|XP_001927231.1| PREDICTED: butyrophilin subfamily 1 member A1-like [Sus scrofa]
+HFDVIGPPEPIlAVVGEDAELPCRLSPNVSAERmELRWFRKKVSPAVFVR--REGREQAGEQMPEYRGRVtLVEDDIAAGHVAVRIQGVKASDDGEYRCF
+FRQ-----DENYEEAIVHLKVAALGSDPQIHM-----EVQESGEIQLECTSMGWYPEP-WVQWrtPKGEEFPSMSESKSPNEEGLFTVAASVIIRDPS--
+VKNVSCYVRNLLLGQEKEVEIS-------------
+>gi|18858393|ref|NP_571075.1| CD166 antigen homolog A precursor [Danio rerio]gi|2497299|sp|Q90460.1|C166A_DANRE RecName: Full=CD166 antigen homolog A; AltName: Full=Activated leukocyte cell adhesion molecule A; AltName: Full=DM-GRASP homolog; AltName: Full=Neurolin; AltName: CD_antigen=CD166; Flags: Precursorgi|452158|gb|AAA50024.1| transmembrane glycoprotein [Danio rerio]
+--------------GETIEVPCNngNN-KPDGLIFTKWKYAKDDGSPGDLLIKQAQKDDPtvSAMDGYKTRVSIAAN-----SSLLIAQGSLTDQRVFTC
+MVVSST----NLEEFSVEVKVH--KKPSAPVIKNKVKELENGKLTQLGECVVESANPAA-DLIWmkNNQALVDDgktiiITSDVTKDPvTGLSSTSSRLQ
+YTARKEDvASQFTCVAKHVTGPNQV---STP------------
+>gi|332257155|ref|XP_003277679.1| PREDICTED: poliovirus receptor-related protein 2-like [Nomascus leucogenys]
+SGRPPAPARTPSNLtfraGEAEHLPRPPPAPrAPSRVSPSWLAPPTPTPYTSDS-LEETLTPPFCISLTTtPILL------nptahptpacLSPSP----
+---------------------FLGFP---------RRKAKPENQAEAQKVTFSQDPTTVALCISKEGRP-PARISWLSSLDWEAKETQVSGTLAGTVTVT
+SRFTLVPSGRaDGVTVTCKVEHES-----------------------
+>gi|213982747|ref|NP_001135545.1| v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog [Xenopus (Silurana) tropicalis]gi|195539639|gb|AAI68021.1| Unknown (protein for MGC:185004) [Xenopus (Silurana) tropicalis]
+--------------------------------------------------------------------------------ITIKMVQVSFDGCYVCTGNQ
+SG---TVKKSSTFSIHVKPEPKKEPTIFLTKSRQLVKTGEPFEVTCTVMDV-FSTVKAQWLDARDmEsTERANFLPTR-IFSL--NLTLKSDGVLFSeSR
+TFTCQAENAIGQVNATFTLD-------------
+>gi|327265502|ref|XP_003217547.1| PREDICTED: macrophage colony-stimulating factor 1 receptor-like [Anolis carolinensis]
+--------------------------------------------------------------------------------IRLRRVGMDDNGWYKCRALV
+QG---Q-------WVQ-------SPKIGLIVKGFIIFYYIFTYFFVTAHCI-VLAFGSY-----CKCHIKLELSFK-----------------------I
+CILTK----KQSALIKT-------------
+>gi|11990448|dbj|BAB19782.1| vascular cell adhesion molecule-1 6D variant lacking D7 [Bos taurus]
+-VEISPGPQIAAQVGDSVVLTCDVRDCES--PSFSWRTLIDsplNGNVRSE---------------------------GSKSTLTLSPVSFENEHFYLCT
+VMCGQ--KKLEKRIQVKPYSFPSnpeiemsGplvsgnpvtvscrvpnvypsdqleielfkgesimmnktfskdvskkaletkslektfipttedignvlv
+clarlpidemefelkqrqstqtlyvnvAPRDTTILVSPSSILEEGSSVNMTCSSNGLPAPKILWSRqlSNGD------LQPISE-NATL------SFMST
+KMEDsGIYVCEGINQVGTSRKEVNL--------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+Q 1 4150 * 4592 3088 * 4105 3102 * 3015 * * * 4534 1617 * 4173 4016 * * * 1
+ 0 * * * * * * 6658 0 0
+
+V 2 4916 * * * 4920 3965 * 3036 * 2270 * 3975 5216 * * 5089 5523 1326 * * 2
+ 0 * * * * * * 8426 0 0
+
+Q 3 5599 * 4373 4058 5479 4001 * 5575 3416 5669 5572 * * 4521 3953 3229 3556 1840 * 4274 3
+ 0 * * * * * * 8966 0 0
+
+L 4 4850 * * * 4674 * * 3230 5352 1634 3889 * 4135 5107 5870 5757 4311 2098 * * 4
+ 59 4648 * 2206 352 * * 9713 1326 0
+
+Q 5 6032 * 4056 4287 * * * 4984 3947 4105 5879 5182 5033 2773 5883 2693 2177 3256 * * 5
+ 19 6285 * 0 * * * 10095 1000 0
+
+Q 6 3197 * 5927 5141 * 4224 5208 4697 4323 4479 * 5164 3285 2325 4031 3374 3789 4038 6450 * 6
+ 111 3751 * 0 * * * 10137 1642 0
+
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+
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+ 17 6451 * 0 * * * 10239 1000 0
+
+A 9 5227 * 4110 3691 5281 4549 5364 6185 5408 3712 * 4339 4472 3760 4760 2155 3517 3464 * 5379 9
+ 67 4888 6449 0 * * * 10138 1286 0
+
+E 10 4789 * 6441 3490 6125 4644 6306 3225 4821 2330 4406 * 5502 3799 6373 4686 5355 2067 * * 10
+ 0 * * * * * 0 10460 0 1000
+
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+ 31 5539 * 0 * 0 * 10332 1186 1000
+
+V 12 2272 * * 5516 6516 4595 * 3865 5350 4356 5080 * 6516 5089 5406 4782 3937 1603 * 4250 12
+ 0 * * * * * * 10424 0 0
+
+K 13 4530 * 6483 4004 5049 6598 5554 3964 3195 4061 6411 4321 4501 3007 3666 3629 3761 3117 6771 * 13
+ 11 6994 * 4644 59 * * 10467 1000 0
+
+P 14 4046 * 4742 2272 * 6556 7004 4717 4429 2875 6674 * 3378 4057 4109 3917 4321 3517 * 5138 14
+ 30 5580 * 1350 719 * * 10599 1238 0
+
+G 15 5980 * 6795 3792 7206 487 5791 * 4961 * * 4242 * 5946 5625 5822 6989 6843 * 6806 15
+ 0 * * * * * * 10759 0 0
+
+A 16 5355 7114 2782 2399 * 2356 6693 7190 3339 6628 5969 4518 * 3678 4879 3637 4226 7170 * * 16
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+
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+
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+
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+
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+
+W 160 * 7798 * * 5891 * 6764 * 6084 5539 * * * * 5841 * * * 161 5535 160
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+S 162 5384 * 3156 3865 * 1952 5638 6789 3210 5638 * 2989 4358 5580 3994 4104 * 4441 6762 6991 162
+ 42 5741 6672 589 1576 1377 702 10384 1129 2028
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+
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+
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+ 30 6531 6695 2807 222 * 0 10422 1000 2576
+
+S 166 6160 * 4044 3241 6349 * 5546 3823 4103 3147 6863 3864 3070 5017 4454 2978 3666 4164 6667 * 166
+ 43 5857 6397 1695 533 2526 275 10463 1144 2705
+
+S 167 4474 6779 3517 3116 5017 6706 6650 5087 4613 3332 5604 3753 3253 5614 5125 3364 3428 5704 6415 4222 167
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+
+G 168 3327 * 2744 3742 * 2467 5191 5073 6675 5498 * 4090 6380 4245 5009 2956 3499 6397 * 5453 168
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+
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+H 170 4434 * 4928 3725 5062 3894 4601 4111 3693 5613 5063 4572 4926 3534 4695 3263 3231 4617 * 3835 170
+ 110 4772 4752 1428 670 1149 865 10546 1500 2262
+
+T 171 3926 * 6799 4051 * 5568 5904 6769 4248 4807 6429 2707 4457 4286 4618 3001 2173 4674 * 4596 171
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+
+F 172 4758 * 4332 4691 3543 4317 5133 4257 5251 3978 5734 4757 5465 4622 3517 2637 3193 4344 * 4558 172
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+
+P 173 4462 * 4519 4084 6812 3936 6947 5022 4265 4428 * 4654 2478 4228 4110 3186 2981 4543 6097 5964 173
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+
+A 174 4511 * 4353 3604 5237 3253 4765 4808 4863 4333 6553 6436 3258 4091 4331 3093 3510 3716 * 5574 174
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+
+V 175 4573 * 4685 4266 4834 4154 5645 4023 3681 3849 6737 4746 3830 4638 4664 3019 4007 2676 * 6892 175
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+
+L 176 6311 6412 4008 3839 5319 4919 4049 4465 4041 2858 5563 5520 4926 3774 3299 4065 3897 4435 5743 4687 176
+ 269 6609 2646 0 * 2551 270 10567 1002 1697
+
+Q 177 4853 6364 3893 2889 * 4272 4246 5565 3876 4043 * 3084 3555 3489 6529 3842 3686 4862 * 6403 177
+ 986 1051 6350 913 1093 522 1719 10145 6390 4122
+
+S 178 5036 * 1886 3877 * 2860 * * 4638 4945 * 3011 4614 6550 4740 2811 4489 5608 * * 178
+ 0 * * * * 2411 300 10311 0 2265
+
+D 179 5794 * 3076 3753 5847 1361 5630 * 4127 5846 6476 3281 * 6375 4442 4085 4586 6828 * 7337 179
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+
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+
+T 182 5634 * 4190 4424 5667 6516 4539 6853 5739 5760 4094 3400 6585 4426 5232 2199 1875 5627 6431 * 182
+ 33 6280 6633 4170 82 * 0 10301 1075 2175
+
+L 183 3888 * 6300 5299 5349 4608 6381 3516 4514 3015 3742 6781 * 4724 4656 4327 3256 2233 6467 5502 183
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+
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+
+S 185 4105 4476 * 4823 * 3836 * 5083 4610 4830 5060 5652 6461 6542 6170 862 4802 6135 * * 185
+ 0 * * * * 4194 81 10360 0 3098
+
+S 186 5325 6738 5328 3815 6487 * 4645 4276 4558 3774 5135 4529 * 4455 3020 3003 3216 3159 4855 4967 186
+ 88 4357 6601 1082 923 759 1289 10362 1546 2988
+
+V 187 5623 * * 6598 4985 4913 6644 3797 * 704 * 6735 * * * 5735 4776 3527 * 4120 187
+ 0 * * * * 418 1991 10366 0 1910
+
+T 188 5168 * 4881 4124 * 6530 * 3729 4373 3334 4894 3930 6573 5691 3072 2999 2472 3710 * 5837 188
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+
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+
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+ 0 * * * * * 0 10423 0 1107
+
+S 191 3384 * 4070 3901 5674 * 5947 4580 3714 4282 5095 3659 3112 5046 3673 2988 4964 3615 * * 191
+ 0 * * * * * 0 10423 0 1107
+
+S 192 3474 5184 4791 3528 6637 4728 5828 4764 4652 5119 7573 4689 5505 4179 4135 2558 2643 3628 * * 192
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+
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+
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+ 68 4438 * 253 2634 550 1658 10398 1603 1695
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+ 0 * * * * 0 * 10423 0 1107
+
+T 200 * * 7215 4518 5140 * 5841 4358 3182 5794 4691 * * 5152 3941 2908 1532 5636 6356 3580 200
+ 0 * * * * * * 10457 0 0
+
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+
+H 205 * * * 6431 6417 6508 1296 * 6703 * 6236 1572 * 4656 * 4381 4847 6219 * 3983 205
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+
+P 206 3439 4751 4031 2166 * 3518 * 6375 3726 5196 * 5360 3232 4934 3660 3851 4336 5443 * * 206
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+
+A 207 2320 * 4326 5458 4940 2518 5283 * 4504 3746 5062 3753 * 5980 5426 2787 4550 4826 * 6693 207
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+
+S 208 5269 * 6131 5266 6314 1612 * 5223 4816 1972 5402 4098 6484 4680 6160 3385 5469 * * 6306 208
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+
+S 209 * * 4140 3093 * 4542 6403 6045 3933 * 6638 4505 2359 3486 3878 2982 3058 5246 6437 * 209
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+
+T 210 2622 * 4175 3312 6324 5365 6461 6141 4600 * * 3795 4472 4114 4637 2726 2342 6101 * * 210
+ 0 * * * * 850 1168 9457 0 1754
+
+K 211 5087 * 3589 3994 6155 4199 5419 5627 3283 4138 * 4537 2268 3344 3895 4603 4227 4568 * * 211
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+
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+
+D 213 4550 * 4105 3035 * * 5788 4507 3969 6136 * 3191 4585 * 4653 3014 2386 3335 * 4969 213
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+
+K 214 3791 5950 * * 5050 * 5027 2873 3447 2848 5801 * * 3099 5027 4978 3909 2184 * * 214
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+
+K 215 6227 * * 2678 * 5964 4412 4890 3029 * 5919 3729 4146 3656 3997 3140 2526 6129 * 5687 215
+ 0 * * * * 0 * 9269 0 1000
+
+I 216 4940 * * * 3774 * 6091 2754 5661 1277 5899 * 6039 4788 * 5667 4743 2654 6060 * 216
+ 0 * * * * * * 9058 0 0
+
+E 217 * * 3804 2806 5774 4547 5607 4565 3687 3174 * 2766 * * * 2276 3533 4906 * * 217
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+
+P 218 5774 4706 5085 5069 * 3978 * 4901 3975 3237 * 4751 2278 * 3950 * 2918 2829 4777 * 218
+ 0 * * * * * * 7841 0 0
+
+R 219 3599 * 4835 3127 4385 4539 * 3671 * 4210 * 4550 * * 2140 2436 4190 4820 * * 219
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+
+G 220 * * * 2538 * 4471 * * 3605 3634 * * 4301 2164 5473 2504 2764 * * * 220
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+
+P 221 * 1346 * 4230 * * 4297 * 4318 * * * 2460 * * 2697 3987 4230 * * 221
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+
+T 222 * * 3607 * 3648 * * * 3089 * * * 2073 * * 2841 2272 2873 * * 222
+ 345 2234 * 3473 136 * * 5709 1600 0
+
+I 223 * 2576 2275 * * 3341 * 3348 * * * 3651 3294 * * 2590 * 3622 * * 223
+ 0 * * * * 0 * 5074 0 1052
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+K 224 * * * * * * * * 1761 * * 3753 1096 * * 2616 * * * * 224
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+
+P 225 * * * 2679 * * * * * * * * 464 * * 3070 * * * * 225
+ 490 1795 * 1359 712 0 * 4716 1343 1107
+
+C 226 * 935 * * * * * * * * * * * * * * 1656 2647 * * 226
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+P 227 * * 3167 * * * 2647 * * * * * 741 * * * 2936 * * * 227
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+
+P 228 * 2567 2655 * * * * * * * * * 1437 * * * 2814 2635 * * 228
+ 0 * * * * * * 3621 0 0
+
+C 229 * 294 * * * * * * * * * * 2442 * * * * * * * 229
+ 0 * * * * * * 3621 0 0
+
+K 230 * * * * * * * * 528 * * 1705 * * * * * * * * 230
+ 0 * * 0 * * * 2240 0 0
+
+//
+�HHsearch 1.5
+NAME e28b3a1dbc0f15f5e8575e6ca4f6ea00
+FAM
+FILE e28b3a1dbc0f15f5e8575e6ca4f6ea00
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:33:30 2013
+LENG 174 match states, 174 columns in multiple alignment
+FILT 179 out of 1574 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEEEEEECCEEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
+HHCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
+>ss_conf PSIPRED confidence values
+9689999989959999999479758999813827899888999999975176550414865999999999999974898888767254763779999999
+83189997486999999979889999999840998713367378889997788865999999999708675689
+>Consensus
+xxxyxxxxxxxxxxxlxxxtxxglxxlxfxxdxxxxxxxxxxxxxxlxxxxxxxxxxxxxxxxxxxxxxxlxxYfxgxxxxxxlxlxxxtxfqxxvxxxl
+xxxipxGxxxtYxxiAxxxgxxxraVgxaxxxnpxxxxiPcHRVvxxxGxxxyxxgxxxkxxlLxxEgxxxxxx
+>e28b3a1dbc0f15f5e8575e6ca4f6ea00
+MLSVEKFRVGERVVWIGVIFSGRVQGIAFAFDRGTLMKRIHDLAEHLGKRGVSISLDVQPSDYPEKVFKVLIGELDNASFLRELSFEGVTPFEKKVYEWL
+TKNVKRGSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCHRVVAHDGIGYYSSGIEEKKFLLEIEGVKEWTS
+>gi|159901119|ref|YP_001547366.1| methylated-DNA--protein-cysteine methyltransferase [Herpetosiphon aurantiacus DSM 785]gi|159894158|gb|ABX07238.1| methylated-DNA--protein-cysteine methyltransferase [Herpetosiphon aurantiacus DSM 785]
+--------------------SEGLLLASFADDDsellAELTEA------Yperlllyrsnt----------------LLDQAFYQYQAYFSGQRQQFALP
+IAwHGSAQQQAIWQQIIQ-IPFGQQWSYQQLAQTLPTPyqaAHAINQALRHNPLALIIPCHRLSNSPqGLGYYRWGrVRQQQ---LCDRE-----
+>gi|322384642|ref|ZP_08058320.1| O6-methylguanine-DNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650]gi|321150527|gb|EFX44008.1| O6-methylguanine-DNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650]
+-----HLNRGNWNLHLAAT----SKGLCYVESGDSS---WEGLQRWAEMRLPHSQLKRD-DNRMNRYKEQFIQYLERERSdFTfPLDLH-GTPFQLTVWK
+ALQE-LSYASTYAYSDIAELIRRPgaARAVGAAIGANPVLIAIPCHRVIGKNRtLTGYRGGLKMKTDLLQLEKSRS---
+>gi|339449054|ref|ZP_08652610.1| methylated-DNA/protein-cysteine methyltransferase [Lactobacillus fructivorans KCTC 3543]
+-----SV-hVNGDKIFFTI-DD---HGLNFVSsPGQ-gV-SQ---LL--DfyTNDH---FEYAKNSERSLLYRKTIKNYLRGKSTdLDlPI--dfmsY-G
+SDEGRLIWNEIAQ-IPFGELVTVSDLAD--QSGlgPDKVELAISKSPIWLVLPLHRVTDRNGrYP-YRTGDTTRDFLVDLE-------
+>gi|302547238|ref|ZP_07299580.1| ADA regulatory protein [Streptomyces hygroscopicus ATCC 53653]gi|302464856|gb|EFL27949.1| ADA regulatory protein [Streptomyces himastatinicus ATCC 53653]
+----------------------GIc-SVLTGDQL--pgDALtgDAEAaLVGRLRKRfPKA-HLIRag--REFDD-RVAAAVRQSEPPRLgRdLPLNIR-V
+TAMSERLRKALRE-TPSEPSVQTR-------------------------------------------------------------
+>gi|90417471|ref|ZP_01225394.1| O6-methylguanine-DNA methyltransferase [marine gamma proteobacterium HTCC2207]gi|90330712|gb|EAS45991.1| O6-methylguanine-DNA methyltransferase [marine gamma proteobacterium HTCC2207]
+-------------------TPRGICQVTFSNGLPliAFVSN-------LQRLLPEAKLLRTEPEPIAVFESIFS-rN-KPI----DktLNLHlFALPTHT
+NVWRILLA-TDPGTLTDHIAIAKAVGRRksTLATHNAITSNPIAFFIPSHRAVDPEGhVGDYRWGVTRKHTMHAWECAT----
+>gi|262375845|ref|ZP_06069077.1| methylated DNA-protein cysteine methyltransferase [Acinetobacter lwoffii SH145]gi|262309448|gb|EEY90579.1| methylated DNA-protein cysteine methyltransferase [Acinetobacter lwoffii SH145]
+--------------------------------------------------------------------------------------SANQEMTEMILVVV
+NQ-IPYAKVATYGQIARLAGLPkhARLVGRVLSHLESDTNIPWYRVINAQAKISL-KQLDEhgqniQQQKLMQEGI-----
+>gi|153952539|ref|YP_001398247.1| methylated-DNA--protein-cysteine methyltransferase [Campylobacter jejuni subsp. doylei 269.97]gi|152939985|gb|ABS44726.1| methylated-DNA--protein-cysteine methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
+-------------------YKIPLCYLSLHSDGKFLTGVdFCDN-----------KRSEKNCSLLDLAKYELDLYFTHKLKkFSvPVLV-QGTDFESKVY
+KALMK-IPYGKIATYKDIAEKkivklCTDTktQIRI------------------------------------------------
+>gi|313127164|ref|YP_004037434.1| methylated DNA-protein cysteine methyltransferase [Halogeometricum borinquense DSM 11551]gi|312293529|gb|ADQ67989.1| methylated DNA-protein cysteine methyltransferase [Halogeometricum borinquense DSM 11551]
+-----------------------------------------------------------------PILDRVFAYLDGDEDhFDDAPVAlTVPTDHRRVLD
+AVRN-IPYGETIALRRVIRMAGMdPededdVATARSALRENPVPLFIPDHRVDD--APGAIPEAVAR--RLRQVESA-----
+>gi|336393345|ref|ZP_08574744.1| hypothetical protein LcortK3_11535 [Lactobacillus coryniformis subsp. torquens KCTC 3535]
+VIYYRRHNLAGHTYYLGA-TAQGLCFVGSWA--QTL-AE-------LQSFYPLAELRPATT-QTEAAATELAQYLNGQRRkFTiPLAWPQATPLQQAV--
+----------------------------------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * 2254 * * 1087 * * 2744 * * * 2553 * * 1
+ 0 * * * * * * 3290 0 0
+
+L 2 * * * * 3181 * * 1483 * 911 * * * * * * * * * * 2
+ 0 * * * * * * 4174 0 0
+
+S 3 * * * 3185 * * 3799 * 3037 * * 2714 * * * 3166 3800 * * 1471 3
+ 0 * * * * * * 4792 0 0
+
+V 4 * * * * * * * * * * * * * * * * * 2175 * 361 4
+ 0 * * * * * * 4792 0 0
+
+E 5 * * 1496 1722 * * * * * * * 3750 * * 2430 3598 * * * * 5
+ 0 * * * * * * 4792 0 0
+
+K 6 * * * * 4657 * 4573 3654 2504 4729 * 3761 * 3822 3506 2444 2540 * * 4770 6
+ 0 * * * * * * 5969 0 0
+
+F 7 4374 * * * 1791 * 4668 2886 * 2361 * * * * * * 4632 3020 4360 3622 7
+ 137 * 3466 * * * * 5969 0 0
+
+R 8 * * * 4497 * * * * 3794 * * 2754 2795 2560 3158 3553 2513 4341 * * 8
+ 0 * * 0 * 0 * 5729 1083 1083
+
+V 9 * * * * 2264 * 3025 1898 * 3197 * * * * 4622 4609 * 2252 * * 9
+ 0 * * * * * * 6013 0 0
+
+G 10 4731 * 3121 * * 2450 * * 3261 2861 * 2665 3591 4816 4732 3669 * 5056 * * 10
+ 0 * * 3170 170 * * 6013 1003 0
+
+E 11 4638 * 2733 3995 * 2141 4621 4668 * * * 2010 3813 4746 * 4626 * * 4545 * 11
+ 59 4638 * 1585 585 * * 6121 1012 0
+
+R 12 * * 4544 * * 2224 3435 * 3458 * 4855 * * 3642 2811 3807 5182 * 2297 * 12
+ 0 * * * * * * 6273 0 0
+
+V 13 3492 * * 3928 3849 * 4473 5076 3619 * * 3364 3874 4552 * 2895 2172 4168 * * 13
+ 0 * * * * * * 6368 0 0
+
+V 14 * * * * 3263 * * 1703 * 2436 * * * * * * * 2895 3784 2345 14
+ 0 * * * * * * 6682 0 0
+
+W 15 4622 * * 5218 4008 4053 4036 * * 2769 * * * * * 3234 3864 * 2784 1825 15
+ 0 * * * * * * 6682 0 0
+
+I 16 3862 * * * 3059 * * 2097 * 1575 * * * * 4965 * * 2253 * * 16
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+I 150 5608 * 7173 6672 4803 5976 5384 2299 4486 1255 6037 * 3765 7560 * 6685 4857 3975 7615 6253 150
+ 124 3930 5910 559 1638 * 0 5905 1288 1055
+
+G 151 3910 6981 4131 6221 * 1227 * 4651 5779 4351 * 6228 3529 * 5837 4549 2985 6035 * 5710 151
+ 106 5044 4634 0 * 243 2688 5871 1271 1157
+
+Y 152 4908 7489 4571 4438 * 1211 4822 * 3488 5018 * 4142 5105 5161 4824 4717 3795 6351 * 6112 152
+ 93 3999 * 1830 477 269 2555 5890 1322 1201
+
+Y 153 4998 6364 6467 5502 2388 6465 6429 * * 5225 * * 4346 6273 5611 5111 6590 5396 * 897 153
+ 58 6037 5364 426 1966 0 * 5940 1029 1000
+
+S 154 2747 6348 6256 4866 5468 3043 4637 * 6507 6170 6415 4661 3528 4805 2373 2796 4234 6305 * 7433 154
+ 73 6574 4685 0 * 356 2193 5898 1124 1098
+
+S 155 3254 * 4830 4170 5590 1552 5263 6702 * 6012 7876 * 3701 7048 5411 3820 6188 * 2699 4611 155
+ 203 2933 * 798 1235 484 1812 5857 1805 1190
+
+G 156 4699 6327 5339 5595 * 499 5021 6460 7253 6973 * 6439 * 4999 7718 3945 5940 * * 6559 156
+ 122 3621 * 1538 609 * 0 5915 1404 1059
+
+I 157 3552 5495 5254 4568 5600 4630 * 3243 6404 2189 * 6254 3673 5001 4477 4856 4187 2752 5582 * 157
+ 61 5902 5342 1000 1000 646 1470 5915 1036 1059
+
+E 158 3180 * 2580 2079 * 6349 5736 4937 4267 5346 6291 4686 5519 4198 4439 4092 4138 4898 5776 7893 158
+ 72 4780 6338 756 1294 2177 360 5879 1154 1126
+
+E 159 3607 7915 3856 3789 6984 * 6639 3224 4079 2778 4043 * * 4202 2612 5541 4434 4325 5925 5069 159
+ 35 6233 6554 1000 1000 0 * 5819 1021 1148
+
+K 160 6364 * * 5543 * * * * 744 6353 5663 * * 2092 3926 * * 5896 * 5629 160
+ 0 * * * * * 0 5893 0 1007
+
+K 161 3459 6485 5903 3171 5864 5226 5613 4512 2741 4625 5230 6235 6364 3148 2078 5340 5784 5973 * 6456 161
+ 88 * 4075 * * 0 * 5893 0 1007
+
+F 162 2339 * 5716 4242 3416 * 6871 4497 4281 4245 4938 7032 * 3670 3239 5562 4484 6331 2876 4625 162
+ 34 6292 6560 0 * 1367 708 5793 1140 1277
+
+L 163 4394 * * 6471 * * 6326 4565 5019 490 4150 * * 6104 4050 * 6339 * * * 163
+ 32 5497 * 0 * 1563 596 5823 1080 1199
+
+L 164 * * * * * * 5465 4430 * 261 6293 * * * 4750 * 6427 6164 * 5569 164
+ 0 * * * * 700 1380 5800 0 1241
+
+E 165 2827 * 3734 2083 * 5757 7880 6851 3449 4522 5562 4522 * 3752 3158 4060 4051 6635 * * 165
+ 0 * * 1409 681 857 1159 5863 1064 1064
+
+I 166 3420 6659 5158 4007 4057 * 2635 5835 5575 1996 4412 5699 6748 5069 3770 * 5026 7257 3934 6059 166
+ 37 7093 5772 0 * 0 * 5888 1002 1003
+
+E 167 * * 3858 121 * * * * 6460 * * * * * * * * * * * 167
+ 15 7303 7872 3585 126 1998 416 5883 1012 1150
+
+G 168 3942 5382 * 6492 * 973 7044 * 3363 * 7393 6229 * 3721 3732 3913 4355 * * * 168
+ 119 3715 8479 1933 438 1261 779 5870 1400 1159
+
+V 169 2885 5584 5175 5157 5175 5316 4635 2651 6116 4874 * 4768 6228 4149 5836 4515 4496 2055 5982 5736 169
+ 73 4720 6449 982 1018 1404 685 5842 1203 1115
+
+K 170 2928 5190 4144 3375 * 5325 5079 4225 3573 2897 5131 4435 4833 5940 3940 5187 4325 3946 * 5134 170
+ 0 * * * * 0 * 5742 0 1140
+
+E 171 4157 * 4027 2983 4104 1398 * * * * * * * * * 2061 3665 * * * 171
+ 0 * * * * * * 4181 0 0
+
+W 172 * * * * * * * * * 2108 * * * * * * * 2224 852 * 172
+ 0 * * * * * * 2081 0 0
+
+T 173 * * * * * * * * * * 2108 * 1200 * * * 1587 * * * 173
+ 0 * * * * * * 2081 0 0
+
+S 174 * * * * * * * * * * * * * * * 0 * * * * 174
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME e2e8d293c6308e03168e6291d88b3e9e
+FAM
+FILE e2e8d293c6308e03168e6291d88b3e9e
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:04:27 2013
+LENG 50 match states, 50 columns in multiple alignment
+FILT 45 out of 47 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 4.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+98666661547899999999898731677888410023762301014789
+>Consensus
+xxmxxxSiqDRTxEFxsivxsxqkrxaxxxxxxrqxllxxxxxxxxxxxx
+>e2e8d293c6308e03168e6291d88b3e9e
+GAMAGMNIKDRTSEFQQSVLSYKKRNKNFREQQRERLQEKESENFANNTT
+>gi|149244238|ref|XP_001526662.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239]gi|146449056|gb|EDK43312.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239]
+---MSVSIQNRTIEFQQCVNTYEKINRKQQQQQqAQQAQHHGSG-------
+>gi|339467499|gb|EGP82602.1| hypothetical protein MYCGRDRAFT_101897 [Mycosphaerella graminicola IPO323]
+--TTHASIQDRTPEFRSILTAAQKSLARQRKPGaPITSQQSQPL-------
+>gi|299756116|ref|XP_001829105.2| integral membrane protein sed5 [Coprinopsis cinerea okayama7#130]gi|298411529|gb|EAU92740.2| integral membrane protein sed5 [Coprinopsis cinerea okayama7#130]
+--M--TSFQDRTTEFRTCVESIRSRSAPGARAEaKQRLLHQPNG-------
+>gi|238505886|ref|XP_002384145.1| ER-Golgi SNARE complex subunit (Sed5), putative [Aspergillus flavus NRRL3357]gi|220690259|gb|EED46609.1| ER-Golgi SNARE complex subunit (Sed5), putative [Aspergillus flavus NRRL3357]
+--MTGPSIQDRTGEFHAILGQAQKRVATNKVGSqRQALLSDSQRRQANG--
+>gi|328772031|gb|EGF82070.1| hypothetical protein BATDEDRAFT_18965 [Batrachochytrium dendrobatidis JAM81]
+-----MVGKNRTNEFLAVVESCLSRDAGIHRQQ-----------------
+>gi|299471589|emb|CBN79451.1| Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]
+-----MTDRTDDFRLIAAALPPQPRRASPHPPK-----------------
+>gi|224112555|ref|XP_002316227.1| predicted protein [Populus trichocarpa]gi|222865267|gb|EEF02398.1| predicted protein [Populus trichocarpa]
+---TTTKYRDRTAEFHSITQTLKKIggIAPVHQNK-----------------
+>gi|255549032|ref|XP_002515572.1| syntaxin, putative [Ricinus communis]gi|223545516|gb|EEF47021.1| syntaxin, putative [Ricinus communis]
+---GKSSYRDRTQEFLSVVERLKKSFSSANNAA-----------------
+>gi|320165357|gb|EFW42256.1| syntaxin 5A [Capsaspora owczarzaki ATCC 30864]
+---ALISAKDRTKEFLSAVATAQRTSAAASALP-----------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 0 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+A 2 0 * * * * * * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1000 0 0
+
+M 3 2562 * * * * * * * * * 438 * * * * * 3432 * * * 3
+ 280 3591 3421 1000 1000 * * 3260 1077 0
+
+A 4 1769 * * * * 3664 * * * * 2024 * * 4285 * * 2191 3165 * * 4
+ 77 * 4274 * * * 0 4277 0 1000
+
+G 5 2826 * * * * 3341 5338 * 4172 4765 5841 2937 2454 5311 * 3531 3681 3022 * * 5
+ 256 * 2623 * * 0 * 4239 0 1089
+
+M 6 2158 * * * 4388 * * 4165 * * 2142 * 4061 * * 3140 2201 4184 * * 6
+ 38 * 5267 * * 2570 266 4676 0 1329
+
+N 7 3885 * * * * * * * 4627 * * 3750 3847 * 5142 873 2969 4440 * * 7
+ 0 * * * * 0 * 4736 0 1355
+
+I 8 5037 5279 3098 * 3696 4648 * 1010 * 4578 * * * * * * * 4029 * 3182 8
+ 45 5023 * 2322 322 * * 4881 1007 0
+
+K 9 * * * * * * * * 2176 * 4665 4047 * 1444 1684 * * * * * 9
+ 0 * * * * * * 4827 0 0
+
+D 10 * * 475 * * * * * * * * 2676 * * * * 3009 * * * 10
+ 0 * * * * * * 4827 0 0
+
+R 11 * * 3009 * * * * * * * * * * * 191 * * * * * 11
+ 0 * * * * * * 4827 0 0
+
+T 12 * * 3009 * * * * * * * * * * * * 4744 254 * * * 12
+ 0 * * * * * * 4827 0 0
+
+S 13 3794 * 6232 4814 2595 5194 5544 4215 5132 4744 * 3118 3536 4146 * 2766 3427 5230 * 5602 13
+ 0 * * * * * * 4827 0 0
+
+E 14 * * * 191 * * * * * * * * * * 3009 * * * * * 14
+ 0 * * * * * * 4827 0 0
+
+F 15 * * * * 191 * * * * 3009 * * * * * * * * * * 15
+ 0 * * * * * * 4827 0 0
+
+Q 16 * * * * * * 3440 3009 3678 2787 * 5404 * 1843 1952 * * * * * 16
+ 0 * * * * * * 4827 0 0
+
+Q 17 1677 * * * * 5082 5325 * * * * * * 1970 * 1702 3833 * * * 17
+ 0 * * * * * * 4827 0 0
+
+S 18 2292 2473 * * * * * 1648 * 5082 * * * * * 3029 * 2790 * * 18
+ 0 * * * * * * 4827 0 0
+
+V 19 2275 * * * * * * 4584 * 2320 * * * * * * 4824 954 * * 19
+ 0 * * * * * * 4827 0 0
+
+L 20 2279 * 5445 2044 * 3664 * * * 2132 * 5081 * 4013 * 3440 4726 * * * 20
+ 0 * * * * * * 4827 0 0
+
+S 21 3732 * * * * * 5404 * * * * * 3009 2407 3319 1766 2672 4744 * * 21
+ 0 * * * * * * 4827 0 0
+
+Y 22 1445 4616 * * 4530 * 4744 3152 * 2883 * * 3009 * * * * * * 2846 22
+ 0 * * * * * * 4827 0 0
+
+K 23 4339 * 3887 5081 * * * * 2024 4616 * * * 1220 2862 * * * * * 23
+ 0 * * * * * * 4827 0 0
+
+K 24 * * * * * * * * 1061 * * * 3009 * 1909 2940 * * * * 24
+ 0 * * * * * * 4827 0 0
+
+R 25 * * * * * * 3860 3488 4741 4530 * * * 4028 802 3682 5132 * * 5652 25
+ 108 3788 * 1000 1000 * * 4827 1103 0
+
+N 26 4831 * 4616 * 3726 * 5230 4824 * 3174 5379 2499 5344 3152 3009 3299 4665 4370 * 5367 26
+ 65 * 4511 * * * * 4827 0 0
+
+K 27 921 * * * * 5372 * * 2531 * * 6028 5399 * 4297 3124 4554 5184 * * 27
+ 93 3999 * 1210 817 0 * 4785 1125 1042
+
+N 28 3723 * * * 5344 4616 * * 2892 * * 4041 3005 3416 4728 1702 3734 5325 * * 28
+ 137 * 3466 * * * * 4827 0 0
+
+F 29 2982 * * * 5349 5295 * 3927 * 4095 * 3260 2840 3276 * 1852 4706 4769 * * 29
+ 68 * 4440 * * * 0 4816 0 1235
+
+R 30 3693 * 5474 5244 * * 2319 * 1672 * * 3685 5818 4038 3728 3253 5450 * * * 30
+ 0 * * * * 1107 900 4765 0 1408
+
+E 31 2407 * * 5209 * * * 5431 2930 * * 4602 2525 3387 3909 4040 3600 3188 * * 31
+ 0 * * * * * 0 4728 0 1185
+
+Q 32 3593 * 5781 * * 2340 5009 * * 4968 * 3995 2303 2371 * 3180 4395 5509 * * 32
+ 0 * * * * 1616 570 4728 0 1185
+
+Q 33 2498 * * 2976 * 3347 * * 2448 5024 * 5300 4058 2971 * 2714 * 5781 * * 33
+ 1776 498 * 204 2924 0 * 4775 2428 1099
+
+R 34 4397 * * * * * * * 2253 * * 2627 3583 3960 1207 * * * * * 34
+ 99 * 3909 * * * * 4089 0 0
+
+E 35 4044 * 4432 3501 * 4667 * 4628 * * * * 4559 855 4112 3802 * * * * 35
+ 0 * * * * * 0 3805 0 1042
+
+R 36 3324 * * * * * * * 2943 4998 * * 4705 4391 2391 2071 2879 * 4044 5173 36
+ 0 * * * * 0 * 3805 0 1042
+
+L 37 3552 * * * 5159 * * * * 837 * 4435 4822 2971 * 4688 4862 4486 * * 37
+ 0 * * * * * * 4089 0 0
+
+Q 38 5065 * * * * * * * * 679 * * * 2237 4435 * 4557 4486 * * 38
+ 0 * * * * * * 4089 0 0
+
+E 39 4168 * 3601 2994 * 4764 3418 * 4435 4486 * 2828 * 4688 4924 2913 2557 * * * 39
+ 0 * * * * * * 4089 0 0
+
+K 40 5303 * 2442 * * 3772 4056 * 3104 * * 3690 2437 4225 * 3059 3245 * * * 40
+ 0 * * * * * * 3817 0 0
+
+E 41 2029 * 4615 2829 * 3386 * * * * * 4105 4000 3442 4530 2919 4292 * * 4695 41
+ 0 * * * * * * 3780 0 0
+
+S 42 3140 * * 4811 * * * * * * * 3967 4016 1471 3654 2085 4343 * * * 42
+ 0 * * * * * * 3834 0 0
+
+E 43 * * * 3592 * 2549 * * 3242 3904 * * 2783 3057 1961 4281 * * * * 43
+ 0 * * * * * * 3671 0 0
+
+N 44 * * * * * * 1707 * * * * 1480 * * 1577 * * * * * 44
+ 0 * * * * * * 1993 0 0
+
+F 45 1707 * * * 1480 * * * * * * * * 1577 * * * * * * 45
+ 0 * * * * * * 1993 0 0
+
+A 46 0 * * * * * * * * * * * * * * * * * * * 46
+ 0 * * * * * * 1620 0 0
+
+N 47 * * * * * * * * * * * 0 * * * * * * * * 47
+ 0 * * * * * * 1620 0 0
+
+N 48 * * * * * 1000 * * * * * 1000 * * * * * * * * 48
+ 0 * * * * * * 1620 0 0
+
+T 49 * * * * * * * * * * * * * * * * 0 * * * 49
+ 0 * * * * * * 1000 0 0
+
+T 50 * * * * * * * * * * * * * * * * 0 * * * 50
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME e3d87649b2f1632f153be8830af2c4ce
+FAM
+FILE e3d87649b2f1632f153be8830af2c4ce
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:14:59 2013
+LENG 125 match states, 125 columns in multiple alignment
+FILT 107 out of 1506 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEEEEECCHHHHHHHHHHCCCEEEECCCCEEEEEECCEEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCEEEECCCCCCCCCEECCCCC
+EEEEEECCCCCEEEEEECCCCCCCC
+>ss_conf PSIPRED confidence values
+9829999991999999999998699899637999999959989999958888888861599999699999999999889968732443225862547961
+9999998999999999878878999
+>Consensus
+xxxxxxxlxvxdxxxxxxfYxxlGxxxxxxxxxxxxxxxxxxxlxlxxxxxxxxxxxxxxixxxvxdxxxxxxxlxxxGxxxxxxxxxxxxxxxxxxxgx
+xxxxxxDpxGxxieixxxxxxxxxx
+>e3d87649b2f1632f153be8830af2c4ce
+TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGG
+TMAALVDPDGTLLRLIQNELLAGIS
+>gi|333371105|ref|ZP_08463067.1| glyoxalase [Desmospora sp. 8437]gi|332976549|gb|EGK13390.1| glyoxalase [Desmospora sp. 8437]
+--SLSPYFVVNGAQRFVDLIKnLFNATELRRydrPDgtiMHVELRIDDTVIMVGDsSEQFPAN--HLLIHVYVPDVDEVFSRALELECVP-------VEE
+PKEsEGDPDRRGTFKDFAGNIWSVATQGK-----
+>gi|194016689|ref|ZP_03055302.1| lactoylglutathione lyase [Bacillus pumilus ATCC 7061]gi|194011295|gb|EDW20864.1| lactoylglutathione lyase [Bacillus pumilus ATCC 7061]
+-----IAIAVFSIKNTSRILQQlFNWHFSDIreipEQEikASFASLDHVHIELIEPMSGSsKLhtfltkrgEGLHHIALKSGDIQADLNRLDHFGVELLQ
+------QSAQIGASGKRIAFIspKETSGVLFELCEpLK------
+>gi|254466122|ref|ZP_05079533.1| glyoxalase/bleomycin resistance protein/dioxygenase [Rhodobacterales bacterium Y4I]gi|206687030|gb|EDZ47512.1| glyoxalase/bleomycin resistance protein/dioxygenase [Rhodobacterales bacterium Y4I]
+-----TTVGAGDIARGTVLFRvpaSp-GYAVEEG-PAGLRYTlpANpGQppalpDYYVkPPFGGrPAs-AGNGSMTAFEERtqkQVREPHAAALLAGGSD
+E--G---QPGfRADYGPLFYVGYLRGAQGNKIAHFS--------
+>gi|254787661|ref|YP_003075090.1| glyoxalase family protein [Teredinibacter turnerae T7901]gi|237686487|gb|ACR13751.1| glyoxalase family protein [Teredinibacter turnerae T7901]
+---FHVHLSVDNLATNIEFYSRlFGAQAHKIKSDYAKWLIEDlrLIFAISSRGD---RPGLNHFGVQALSdedLAVLRTRAINaNEGTFVD-------EA
+DaRCCYAKsDKHWVSDPQGIPWEHFYTR------
+>gi|239928418|ref|ZP_04685371.1| glyoxalase/bleomycin resistance protein/dioxygenase [Streptomyces ghanaensis ATCC 14672]gi|291436745|ref|ZP_06576135.1| glyoxalase/bleomycin resistance protein/dioxygenase [Streptomyces ghanaensis ATCC 14672]gi|291339640|gb|EFE66596.1| glyoxalase/bleomycin resistance protein/dioxygenase [Streptomyces ghanaensis ATCC 14672]
+-----VLQVVSDRARYESLFLDvLGFRLSdhidlapN---LaATFLHCNRrhHSFAFTPkVA---GRPLgVGHFMLEVTdldVIGRAMEHIEDEPHRLL-
+-----KTFGRHSNDRMVSFYLLTPSDVGLEFG---------
+>gi|291435257|ref|ZP_06574647.1| bphC [Streptomyces ghanaensis ATCC 14672]gi|291338152|gb|EFE65108.1| bphC [Streptomyces ghanaensis ATCC 14672]
+-----------DLEVMEKFLTAFGMVKAEgSDDRTLYMRGTgtQHHIHVTRKA---DKQRFVGASIEVAGYDDLVELAAKQGsSPV---------RESTE
+PGGGHEVSMTMPDGIEIRAIWGRRkAEPIP
+>gi|172036226|ref|YP_001802727.1| 4-hydroxyphenylpyruvate dioxygenase [Cyanothece sp. ATCC 51142]gi|171697680|gb|ACB50661.1| 4-hydroxyphenylpyruvate dioxygenase [Cyanothece sp. ATCC 51142]
+-------WYVKNADYWKKWFInVMGFHAIagghNDHTYTEIVKTGskdyPIIFVISSPLSPQSPVAkfleihppgVADIAFRVNNLKACLEKIKNLGTVI
+-------QEPMKEkkYTNGYLQWSKIISQTGLIH-----------
+>gi|224826541|ref|ZP_03699642.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Lutiella nitroferrum 2002]gi|224601142|gb|EEG07324.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Lutiella nitroferrum 2002]
+-------VRVTDTTKAIEWYQRvLGLTPDpryrhmqDEPHGVTMVANPSSTVRLALCEDAESSTAIGAVAFVVSgqEFMEWIDQLAGERVTNREGQTIAR
+DSVYDHHFFCS-LSFVDPFGNAFEVVSYD------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+T 1 * * * * * * * * * * * * 1643 * * * 557 * * * 1
+ 0 * * * * * * 2280 0 0
+
+D 2 2749 * 895 * * * * * * * * 2591 * * * * 2763 * * * 2
+ 0 * * * * * * 3733 0 0
+
+Q 3 3922 * * * * * 2144 * * * 2990 * 4119 2776 2316 3095 4044 * * * 3
+ 98 3922 * 0 * * * 6009 1038 0
+
+A 4 3039 4578 * * 3837 4930 * 1720 * 4118 4750 4934 5033 4694 * 4886 4765 2618 * * 4
+ 0 * * * * * * 7579 0 0
+
+T 5 5110 * * * 3422 5399 2292 3424 4201 * 4446 5598 * 4647 4504 4254 2638 3466 * 4374 5
+ 54 * 4754 * * * * 8543 0 0
+
+P 6 4136 6239 * * 4151 6055 * 2336 * 3721 5867 * 2869 6192 * 5021 3252 1830 * * 6
+ 19 * 6236 * * * 0 9930 0 1177
+
+N 7 2868 5246 6540 3745 3752 2956 4145 3981 4830 4379 4858 3467 * 5293 6432 4333 4839 3558 * 6183 7
+ 0 * * 0 * 0 * 10245 1058 1433
+
+L 8 * * * * 2929 * * 2347 * 1677 4686 * * 6455 5464 * 6825 2353 5769 3973 8
+ 0 * * 1000 1000 * * 10403 1000 0
+
+P 9 3495 6420 4901 4832 4137 4265 5670 5133 5860 4874 4718 4648 2993 5181 3424 4655 4341 4565 5054 2867 9
+ 14 6700 * 0 * * * 10412 1000 0
+
+S 10 3710 4185 * * 6414 5528 * 5022 * * * * * 6749 * 3223 2251 1125 6533 6825 10
+ 30 5605 * 516 1735 * * 10474 1253 0
+
+R 11 3550 * 3320 3568 5834 4620 4771 * 2798 6567 * 3464 3340 5707 4129 3289 3547 5192 * * 11
+ 34 5434 * 1000 1000 0 * 10429 1334 1058
+
+D 12 5153 * 1113 5271 * 5252 6555 * 4357 6340 * 1951 * 4564 4705 4425 * * * * 12
+ 0 * * * * * * 10443 0 0
+
+F 13 3339 * 6419 5606 4220 * * 2788 * 1959 3741 * 3501 6941 5011 4842 5527 2902 * 5597 13
+ 0 * * * * * * 10443 0 0
+
+D 14 3011 * 2386 2284 * 4750 5675 6556 3136 5658 6384 5675 4693 2810 5741 * 5693 5182 * * 14
+ 15 6552 * 0 * * * 10495 1058 0
+
+S 15 2250 6458 4964 2548 * 5121 6527 6794 2805 5195 * 5224 6556 4634 3119 4391 3906 5185 * 5518 15
+ 0 * * * * * * 10495 0 0
+
+T 16 1735 * 6780 4687 6923 4292 6371 6571 6552 3730 4010 6714 * 5271 * 2578 3045 4484 4477 6962 16
+ 0 * * * * * * 10495 0 0
+
+A 17 3025 5994 6344 4729 5551 6710 5698 3084 3610 3381 5123 * * 5911 2998 4240 4009 2474 * * 17
+ 0 * * * * * * 10495 0 0
+
+A 18 2444 * 3016 2829 * * * 5609 3269 * 6630 3550 5792 4397 3650 3751 4338 4272 6448 * 18
+ 12 6881 * 2000 415 * * 10495 1000 0
+
+F 19 6544 * 6677 6857 786 * 5311 5899 * 4010 6565 * * 5821 5305 6745 * 5763 3062 3541 19
+ 0 * * * * * 0 10483 0 1000
+
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+
+S 125 * * * * * * * * * * * * 1160 * * 856 * * * * 125
+ 0 * * 0 * * * 1711 0 0
+
+//
+�HHsearch 1.5
+NAME e44a004fd43907d485810413e310dc01
+FAM
+FILE e44a004fd43907d485810413e310dc01
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:56:25 2013
+LENG 124 match states, 124 columns in multiple alignment
+FILT 40 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 2.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
+EEEECCCCCCCEEEEEEEEEEECC
+>ss_conf PSIPRED confidence values
+9865554889898652403010022684773658885466998855774167871589999667998304558752255023788566640056777846
+787537998757778777787159
+>Consensus
+xxxxxkxxpxxxDxxsCdYWRyCaiDGxlCsccGGsxtsCPPGTexSpxsWvGtCxNPxDgkxYlIsYnDCCGkxxcgxcxCxxxexexPxYrpxxxNDi
+xWCxgxxsxxxxYhCtxaxivGxA
+>e44a004fd43907d485810413e310dc01
+VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDI
+IWCFGAEDDAMTYHCTISPIVGKA
+>gi|312141802|ref|YP_004009138.1| methylamine dehydrogenase maua [Rhodococcus equi 103S]gi|325672940|ref|ZP_08152634.1| methylamine dehydrogenase small subunit [Rhodococcus equi ATCC 33707]gi|311891141|emb|CBH50460.1| putative methylamine dehydrogenase MauA [Rhodococcus equi 103S]gi|325556193|gb|EGD25861.1| methylamine dehydrogenase small subunit [Rhodococcus equi ATCC 33707]
+-----------KDPAECEYWRWCNMDGTSCAa-CnGGGVTTCAPGSKPGAEFWVGCCTNPDTGKTYLIAYYDCCGAPSCSNAFCGEPDMQAIMYNPVsgs
+---ydqEIIWCVSDES--QSYTCTMAPIIGED
+>gi|254516233|ref|ZP_05128293.1| methylamine dehydrogenase light chain [gamma proteobacterium NOR5-3]gi|219675955|gb|EED32321.1| methylamine dehydrogenase light chain [gamma proteobacterium NOR5-3]
+-----------GDNQSCDYWRYCAFSGQICSCCGGSMTQCPPGSETASVAWVGTCHNPLDGQDYLISYNDCCGKSACGRCGCHRSEGDRPVYFPSKSNSI
+LWCFGSNS--HAYHCTLARVVGKA
+>gi|326387252|ref|ZP_08208862.1| putative methylamine dehydrogenase light chain precursor [Novosphingobium nitrogenifigens DSM 19370]gi|326208433|gb|EGD59240.1| putative methylamine dehydrogenase light chain precursor [Novosphingobium nitrogenifigens DSM 19370]
+-----------SDDTKCNYWRYCAIDGALCTCCGGGIHTCPPGAEPSPVSWVGTCINPEDGKAYLIAYRDCCGKSFCNKCNCNGSDRETQIYTPQLNNDI
+IWCFGTQS--MEYHCSTAVLVGAA
+>gi|119898548|ref|YP_933761.1| methylamine dehydrogenase, L chain [Azoarcus sp. BH72]gi|119670961|emb|CAL94874.1| probable methylamine dehydrogenase, L chain [Azoarcus sp. BH72]
+-------AAKKagGkapTDEDCEYWRYCAQDGYLCNCCGGTASSCPPGTEASKVSWIGTCHNPEDGKDYLISYNDCCGKTACGRCFCNTNEREMPGYRMG
+LHNDINWCMANDS--TMFHCTMATVVGLA
+>gi|167644528|ref|YP_001682191.1| amine dehydrogenase [Caulobacter sp. K31]gi|167346958|gb|ABZ69693.1| Amine dehydrogenase [Caulobacter sp. K31]
+-------VADDpGDPTSCDYWRYCAIDGFLCSCCGGSVSTCPPGTEMSPITWIGTCTNPSDGRAYVISYNDCCGTSSCGQCSCHRSEGDRPQVRPQSNND
+YNWCLGTES--SIYHCSAAAIIGVA
+>gi|238796082|ref|ZP_04639593.1| Aralkylamine dehydrogenase light chain [Yersinia mollaretii ATCC 43969]gi|238720027|gb|EEQ11832.1| Aralkylamine dehydrogenase light chain [Yersinia mollaretii ATCC 43969]
+-------KPa---DVNECNYWRYCALDGNLCSSSGGSITTCPVGTETSKTSWVGTCRNPHDNKNYLVSYNDCCGKTTVANSVnCFNNQGERPGYRMGLHN
+DINWCMANTN--KGYHCTVATLVGIA
+>gi|335421103|ref|ZP_08552131.1| amine dehydrogenase [Salinisphaera shabanensis E1L3A]gi|334892933|gb|EGM31159.1| amine dehydrogenase [Salinisphaera shabanensis E1L3A]
+-------PGtpGDpGDPQSCDYWRYCSVDGFLCTCCGGTINACPPGTDVSEVTWVGTCHNPADGRDYVIAYNDCCGKQACGQCACNRNDSEQPLYRPFNN
+NDINWCLGAEH--LTYNCTIATIRDVA
+>gi|189220011|ref|YP_001940651.1| methylamine dehydrogenase, L chain [Methylacidiphilum infernorum V4]gi|189186869|gb|ACD84054.1| Methylamine dehydrogenase, L chain [Methylacidiphilum infernorum V4]
+----GKEPPASNDPaTSCSYWRYCSLDGFLCSCCGGGATACPPGTFPSPTHWVGSCRNPEDGKHYLVSYRDCCGKGYCGRCYCRQTDAkEMPVYQLLRNN
+DTIWCFGAPN--MIYHCTGAAVLAPA
+>gi|330503791|ref|YP_004380660.1| amine dehydrogenase [Pseudomonas mendocina NK-01]gi|328918077|gb|AEB58908.1| amine dehydrogenase [Pseudomonas mendocina NK-01]
+------------------------------------------------------------------------------------HDSEEPLYQPNNDNDV
+NWCLAAKS--HIYHCTASIIRGVA
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 * * * * * 1591 * * * * * * * * * * * 582 * * 1
+ 0 * * * * * * 1190 0 0
+
+D 2 * * 0 * * * * * * * * * * * * * * * * * 2
+ 0 * * * * * * 1190 0 0
+
+P 3 * * * * * * * * * * * * 0 * * * * * * * 3
+ 0 * * * * * * 1190 0 0
+
+R 4 * * * * * * * * * * * * * * 0 * * * * * 4
+ 0 * * * * * * 1190 0 0
+
+A 5 1129 * * * * 882 * * * * * * * * * * * * * * 5
+ 0 * * * * * * 1513 0 0
+
+K 6 * * * * * * * * 0 * * * * * * * * * * * 6
+ 0 * * * * * * 1513 0 0
+
+W 7 * * * 1628 * * * * * * * * * * * * * * 564 * 7
+ 0 * * * * * * 1513 0 0
+
+Q 8 2074 * * * * * * * 1958 * * * 2920 1683 * * * 4020 * * 8
+ 0 * * * * * * 2241 0 0
+
+P 9 2943 * * * * 4108 * * * * * * 300 * * * * * * * 9
+ 782 1256 * 1327 734 * * 2241 1211 0
+
+Q 10 3626 * 3935 * * 1763 * * 3717 * * * * 1236 * * * 4100 * * 10
+ 0 * * * * * 0 2185 0 1000
+
+D 11 3899 * 1086 2060 * * * * 3717 * * * * * * 3626 3942 * * * 11
+ 1683 682 3942 168 3186 * 0 2185 1308 1000
+
+N 12 4994 * 3205 5040 * 1170 * * 2352 * * 2672 * * * 4949 * * * * 12
+ 93 3998 * 3838 105 0 * 2535 1102 1032
+
+D 13 * * 90 4985 * * * * * * * * * * * * 5124 * * * 13
+ 49 * 4890 * * * * 2546 0 0
+
+I 14 * * 2817 5295 * * * 3661 * * * 4911 909 5350 4575 * * 3042 * * 14
+ 53 4806 * 0 * 0 * 2533 1023 1005
+
+Q 15 3477 * * 5179 * * * * 5467 4244 * 3165 * 1977 * 5484 1254 * * * 15
+ 0 * * * * * * 2548 0 0
+
+A 16 2503 * 5179 3347 * * * * 3591 * * * * 4332 * 900 5092 * * * 16
+ 0 * * * * * * 2548 0 0
+
+C 17 * 0 * * * * * * * * * * * * * * * * * * 17
+ 0 * * * * * * 2548 0 0
+
+D 18 * * 569 2456 * * * * * * * 3619 * * * 4856 5158 * * * 18
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+
+Y 19 * * * * * * * * * * * * * * * * * * * 0 19
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+
+W 20 * * * * * * * * * * * * * * * * * * 0 * 20
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+
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+
+H 22 * * * * * * 1771 * * * * 5382 * * * * * * 3817 708 22
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+
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+
+S 24 680 * * * * 5213 * * * * * 3886 * * * 1831 * * * * 24
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+
+I 25 * * * * 4274 * * 866 * 2670 3404 * * 5374 * * * 3013 * * 25
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+
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+
+N 28 5208 * * * 1316 * * * * * 5656 1801 * 4279 * 5575 3404 5266 5418 4372 28
+ 0 * * * * * * 2555 0 0
+
+I 29 * * * * * * * 2612 * 419 * * * * * 3886 * 5588 * * 29
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+
+C 30 * 0 * * * * * * * * * * * * * * * * * * 30
+ 0 * * * * * * 2555 0 0
+
+D 31 3054 * 2488 * * 4257 * * * * * 5374 * * * 1249 2293 * * * 31
+ 101 3886 * 0 * * * 2555 1059 0
+
+C 32 * 264 * * * * * * * * * * * * * 3228 4043 * * * 32
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+
+S 33 * 324 * * * * * * * * 4974 * * * * 2561 * * * * 33
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+
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+
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+
+S 36 * * * * * 2129 * * * * * * * * * 823 2279 * * * 36
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+
+L 37 2723 * * 5393 * * * 3306 * 2305 3866 * * 5213 * 3766 3265 2175 * 5219 37
+ 0 * * * * * * 2555 0 0
+
+T 38 * * * * * * 2976 * * * * 3592 * * * 2379 742 * * * 38
+ 0 * * * * * * 2555 0 0
+
+N 39 2979 * * * * * * * * * * 4515 * 4274 * 1015 1821 * * * 39
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+
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+
+P 41 3886 * * * * * * * * * * * 101 * * * * * * * 41
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+
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+
+G 43 * * * * * 0 * * * * * * * * * * * * * * 43
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+
+T 44 3667 * * * * * * * * * * * * * * 2205 505 * * * 44
+ 0 * * * * * * 2555 0 0
+
+K 45 5279 * 5397 941 4882 * 5348 * 3073 4517 * * * 5266 5860 3478 4337 5247 * * 45
+ 0 * * * * * * 2555 0 0
+
+L 46 2696 * * * * * * * * 2894 2964 * 1275 * 5247 * 4204 3489 * * 46
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+
+A 47 3030 * * * * 3886 * * * * * * * * * 304 * * * * 47
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+
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+
+A 49 5236 * * 3886 * 4517 * 1738 * * * * * * * 3211 2892 1646 * * 49
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+
+V 52 * * * * * * * 1257 * 5105 * * * * * * * 856 * * 52
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+A 53 2894 * * * * 208 * * * * * * * * * * * * * * 53
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+
+S 54 * 3886 * * * * * * * * * * * * * 2072 526 * * * 54
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+
+C 55 * 0 * * * * * * * * * * * * * * * * * * 55
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+
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+
+N 57 * * * * * * * * * * * 0 * * * * * * * * 57
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+
+P 58 * * * * * * * * * * * * 0 * * * * * * * 58
+ 0 * * * * * * 2555 0 0
+
+T 59 2002 * 3417 3555 * 2639 3714 * * 4359 * 5393 4517 3747 * 5650 3689 4421 * * 59
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+
+D 60 * * 101 * * * * * * * * * * * * * 3886 * * * 60
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+
+G 61 * * 5656 4974 * 474 * * 4577 * * 3357 4517 5588 5348 * * * * * 61
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+
+Q 62 * * * * * * * * 1272 5656 * 3848 * 2428 1799 5418 * * * * 62
+ 0 * * * * * * 2555 0 0
+
+S 63 3172 * 1567 * * * 4038 * 4517 * * 3007 * 5370 * 2603 2903 * * * 63
+ 0 * * * * * * 2555 0 0
+
+Y 64 * * * * * * * * * * * * * * * * * * * 0 64
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+
+L 65 * * * * * * * 2462 * 775 4336 * * * * * * 2439 * * 65
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+
+I 66 * * * * * * * 478 * * 5219 * * * * * 4517 2242 * * 66
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+
+A 67 1345 * * * * * * * * * * * * * * 722 * * * * 67
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+
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+ 0 * * * * * * 2555 0 0
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+
+D 70 * * 0 * * * * * * * * * * * * * * * * * 70
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+
+C 71 * 0 * * * * * * * * * * * * * * * * * * 71
+ 0 * * * * * * 2555 0 0
+
+C 72 * 0 * * * * * * * * * * * * * * * * * * 72
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+
+G 73 * * * * * 0 * * * * * * * * * * * * * * 73
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+
+Y 74 3183 * * * * * * * 557 * * * * 3755 5266 * 5650 5636 * 3832 74
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+
+N 75 2967 * 3755 * * 4105 4467 * * * * 3157 3515 3476 * 2003 2681 * * * 75
+ 0 * * * * * * 2555 0 0
+
+V 76 1997 * * * 5208 3769 * * * 5266 * 5247 * * * 2043 2832 2655 * 4187 76
+ 0 * * * * * * 2555 0 0
+
+S 77 5383 324 * * * * * * * * * * * * * 3397 * 4307 * 4974 77
+ 0 * * * * * * 2555 0 0
+
+G 78 3304 * 5656 5575 * 714 * * * * * 3305 * * * 3021 5383 * * * 78
+ 38 5266 * 1585 585 * * 2555 1000 0
+
+R 79 5559 * * 3234 * * * * 3803 * * 3406 * 2545 1043 4328 * * * * 79
+ 0 * * * * * * 2555 0 0
+
+C 80 3330 366 * * * * * * * * * * 5395 5348 * 4307 * 5279 * * 80
+ 83 4168 * 0 * * * 2555 1039 0
+
+P 81 2459 * * 5395 2368 3863 * * * 3245 3937 3293 5236 5260 * 3781 5279 3756 * 4882 81
+ 39 5226 * 0 * * * 2555 1000 0
+
+C 82 * 0 * * * * * * * * * * * * * * * * * * 82
+ 0 * * * * * * 2555 0 0
+
+L 83 5560 * * * 4302 3886 3119 * * 1929 5559 1710 * 5247 4882 4248 5530 5550 * * 83
+ 0 * * * * * * 2555 0 0
+
+N 84 5560 * * 3886 * 3730 * * * * * 1711 * 4882 1335 * 3322 * * * 84
+ 0 * * * * * * 2555 0 0
+
+T 85 4431 * 3699 * * * 6593 * * * * 1757 3867 5291 * 2728 1716 5576 * * 85
+ 0 * * * * * * 2555 0 0
+
+E 86 * * 1834 749 * * 5399 * * * * * * 3735 * * 5291 * * * 86
+ 0 * * * * * * 2555 0 0
+
+G 87 4903 * 4282 * * 962 * * * * 3867 * * * 1954 3733 * * * * 87
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+
+E 88 5130 * 1549 834 * * * * * * * * * 3867 * * * * * * 88
+ 0 * * * * * * 2555 0 0
+
+L 89 3867 * * 5044 * * * * 3188 2322 3593 * * 3396 1727 * 3165 * * * 89
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+
+P 90 * * * * * * * 3867 * * * * 145 5224 * * * * * * 90
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+
+V 91 4993 * * * * 2567 * 3788 * 2975 3074 * 5593 4145 * 4353 5364 1595 * * 91
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+
+Y 92 * * * * * * 5643 * * * * * * * * * * 3675 * 149 92
+ 0 * * * * * * 2555 0 0
+
+R 93 * * * 5291 3419 * * * 4378 * * 3162 * 3145 863 4993 5224 * * * 93
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+
+P 94 5136 * * * 5291 * * * 4535 3248 2991 5244 632 * * * * * * * 94
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+
+E 95 4635 * 3969 2916 2829 2700 * * * 4903 5297 6593 * 2278 * 3376 5130 3867 * * 95
+ 171 3867 4535 1585 585 * * 2555 1059 0
+
+F 96 3219 * * * 2632 5514 * * 3279 2184 * 3079 * * 4789 2751 4949 4296 * * 96
+ 0 * * * * 1147 867 2436 0 1140
+
+A 97 2731 * 6413 * * 5218 2254 * * * * 1337 * * * 2453 5466 * * * 97
+ 0 * * * * * 0 2502 0 1059
+
+N 98 * * * * * * * * * * * 46 * * * 4983 * * * * 98
+ 0 * * 1585 585 0 * 2502 1059 1059
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+D 99 * * 187 3867 * * * * * * * * * * * 5220 5244 * * * 99
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+
+I 100 * * * * * * * 479 * 4151 * * * * * * 4015 3210 * 4145 100
+ 0 * * * * * * 2555 0 0
+
+I 101 * * 5130 * * * * 1565 * 3419 * 1075 * * * * * 3939 * * 101
+ 0 * * * * * * 2555 0 0
+
+W 102 * * * * * * * * * * * * * * * * * * 0 * 102
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+
+C 103 * 0 * * * * * * * * * * * * * * * * * * 103
+ 0 * * * * * * 2555 0 0
+
+F 104 * * * * 1224 * * 5652 * 2293 2164 * * * * 5173 * 3366 * * 104
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+
+G 105 2267 * * * * 561 * * * * * * * * * 3129 * * * * 105
+ 65 4499 * 2000 415 * * 2555 1024 0
+
+A 106 1917 * 3812 * * 4404 * * * * * 2149 * * * 4143 1579 * * * 106
+ 0 * * * * * 0 2621 0 1024
+
+E 107 3589 * 3860 1388 * 3343 * * 4994 * * 5090 4886 2982 * 3830 3718 * * * 107
+ 252 3178 4328 0 * 0 * 2621 1106 1024
+
+D 108 5328 * 2648 * * 4278 5347 * * * * 2320 * * * 891 * * * * 108
+ 3233 * 162 * * 0 * 2489 0 1042
+
+D 109 * * 523 * * 1718 * * * * * * * * * * * * * * 109
+ 655 * 1455 * * * 0 1560 0 2128
+
+A 110 613 * * * * 1530 * * * * * * * * * * * * * * 110
+ 0 * * * * 0 * 1190 0 2156
+
+M 111 5528 * 5487 4157 * * 4557 * 3198 3759 1926 * 5343 3389 * 2459 3641 5088 * * 111
+ 33 5487 * 1000 1000 * * 2540 1000 0
+
+T 112 3150 * * 5147 * 3552 * 2491 * 5293 3257 5352 5133 * * 3433 1963 3970 * * 112
+ 0 * * * * * * 2540 0 0
+
+Y 113 * * * * 2937 * * * * * * * * * * * * * * 202 113
+ 0 * * * * * * 2540 0 0
+
+H 114 * * * * * * 578 * * * * 2120 * * * * 3817 5088 * * 114
+ 0 * * * * * * 2540 0 0
+
+C 115 * 0 * * * * * * * * * * * * * * * * * * 115
+ 0 * * * * * * 2540 0 0
+
+T 116 * * * * * * * * * * * * * * * 1264 777 * * * 116
+ 0 * * * * * * 2540 0 0
+
+I 117 5028 * * * * 4867 * 2352 * 3476 3343 * * * * * 1508 2327 * * 117
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+
+S 118 779 * * * * * * * * * * * * * * 1345 5397 * * * 118
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+
+P 119 2497 * * * * * * 3563 * 4124 * * 2033 * 4969 * 3660 1619 * * 119
+ 0 * * * * * * 2540 0 0
+
+I 120 * * * * * * * 928 * 2891 * * * * * * * 1558 * * 120
+ 0 * * * * * * 2540 0 0
+
+V 121 5343 * * * * * * 2773 * 2450 * * * * 3660 4429 5088 1026 * * 121
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+
+G 122 4867 * 5384 * * 86 * * * * * * * * * * * * * * 122
+ 0 * * * * * * 2540 0 0
+
+K 123 3057 * * 3389 * * * 5182 2654 2985 * 5357 3973 5222 5230 * 3672 1991 * * 123
+ 0 * * * * * * 2540 0 0
+
+A 124 250 * 3782 * * * * * 5088 * * * * 5236 * 5037 * * * * 124
+ 0 * * 0 * * * 2490 0 0
+
+//
+�HHsearch 1.5
+NAME e69e1ac0a4b2554df25f2c2183b0fba0
+FAM
+FILE e69e1ac0a4b2554df25f2c2183b0fba0
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 13:00:49 2013
+LENG 248 match states, 248 columns in multiple alignment
+FILT 178 out of 1119 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCHHHHHHCCCCEEEECCHHHHH
+HHCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCHHHHCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
+CCCEEEEECCCCCCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9987089997521689999999999998621244697699988788899999973147879833223036899736157999998699999978788755
+5078789999999999978998999908878998665559999999999851414436359998787761799999989999999999999998517100
+466059981766802299997078999899713847789999999859
+>Consensus
+mmrxxxixxNwKmnxxxxxxxxxxxxxxxxxxxxxxxxvxvxPpxxxLxxxxxxxxxxixigAQnxxxxxxGaxTGevSxxmLxdxGxxxviiGHSERRx
+xfxEtdxxixxKvxxalxxgLxpIlCvGExxexxxxgxxxxvxxxQlxxxlxxxxxxxxxiIAYEPvWAIGtGxxaxxexixxxxxxIRxxlxxxxxxxx
+xxxvxILYGGSVxxxNxxxlxxxxxiDGxLVGxaslxxxFxxiixxxx
+>e69e1ac0a4b2554df25f2c2183b0fba0
+MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRK
+YFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQ
+ANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSAM
+>gi|340708258|pdb|3S6D|A Chain A, Crystal Structure Of A Putative Triosephosphate Isomerase From Coccidioides Immitis
+--PKTLLIISLKMYFTPSRTIDYIQGLLEPRNDiirqenRSRLLLALIPDFLTIYPCSEAIKefesnlaapqdadtpPPLLLGAQDCFWDSLGPYTGEIS
+PVCLRDMNVSIVELGHAERRAIFGETDQQVARKAAAAADQGLIPLVCIGEVSTlgpivSEAIGRAVGECEAQIRPVLEALPRDAPVIFAYEPVWAIGKPQ
+PARVDHVGAVVSGIRSVIERI-DRHRKGEVRILYGGSAGPGLWGPGGLGKEVDGMFLGRFAHDiEGVRKVVRE--
+>gi|261368205|ref|ZP_05981088.1| triose-phosphate isomerase [Subdoligranulum variabile DSM 15176]gi|282569711|gb|EFB75246.1| triose-phosphate isomerase [Subdoligranulum variabile DSM 15176]
+----------------------------------SEVEFAAYLPEAHLLSAAAARKpgCPLQLGCQGVYRAdtavggNFGAFTTNRPASAAKALGCESVL
+IGHCEERNDKmgilAEagvtgteasraVNRLLNQEIRCAVARGMTVLYCIGEKSEEQD--AWQQVLGEQLSLGLEGV-DKSKVVIAYEPVWSIGPGKTPa
+DKPYITKIARFVKEQT---------GGMDVVYGGGLKSDNAAMLASIPEIDGGLIaltrfsGEIGFYpEEYLEIIRLY-
+>gi|170017749|ref|YP_001728668.1| triosephosphate isomerase [Leuconostoc citreum KM20]gi|169804606|gb|ACA83224.1| Triosephosphate isomerase [Leuconostoc citreum KM20]
+-----ICIVNFKSLMCYKKQLQWLQDIEQLP---LNFKLLVAPTLPEHNTY-----QNYEIIAQNISLAQ--RTVGEMSANVLKALDIRYAFVGHLERRK
+LLNETTDIIHERLANCLNNDMIPIICLGMHS-------GPDLVIRELKSILKNIDfMGQRIIVAYESLRSTQSNSSAySYVEMEAVYLKLNQYLSELVKN
+SNLASYSLVMGGHITAEG-ISVARKIGYDGVLIGDRYQEvSAFQPIIE---
+>gi|258614850|ref|ZP_05712620.1| triosephosphate isomerase [Enterococcus faecium DO]
+--RKPIIAGNWKMNKTASEAKEFAEAVKNKIPS-NDKVdsVIGSPALFLQELMTSAEGTELKISAQNCYWENSGAFTGETSPAALADLGVH---------
+----------------------------------------------------------------------------------------------------
+--------------------------------------------------
+>gi|20095100|ref|NP_614947.1| triosephosphate isomerase [Methanopyrus kandleri AV19]gi|22096220|sp|Q8TUT9.1|TPIS_METKA RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerasegi|19888388|gb|AAM02877.1| Triosephosphate isomerase [Methanopyrus kandleri AV19]
+----PPVIVNFKAYSeaVGENALRLARVAAEVSEE-TGVEVGICPPHVDLRDVVREVGDEVTVLAQAVDAAEPGGRTGHVTPEMVVEAGADGTLLNHSER
+RMLLEDLKD----VCRACINEGLLTIVCASDALAAR--------------AAG----ALSPHAVAVEPPELIGTGtpvSKADPEVVERSVEVVKEV----
+-----SEETAVLCGAGITDGSDVRAAVELGADGVLVASGVVL-----------
+>gi|312870562|ref|ZP_07730679.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3]gi|311093922|gb|EFQ52249.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3]
+-----------------------------------------------------------------------------------------LTLLDHSSR--
+-------ELNHQLQTTLQGSQQPVLKLDEG-DLRLTPVdFAYLLSRRLANVLAGVsrAAVARLVIVYSPSWA-GEcRLPADAQRIRIAHRQIRDLLRIIY
+DQETAGQVQIIYGGFVFEEELADVLCDSNVDGVLMN----------------
+>gi|312887118|ref|ZP_07746722.1| triosephosphate isomerase [Mucilaginibacter paludis DSM 18603]gi|311300430|gb|EFQ77495.1| triosephosphate isomerase [Mucilaginibacter paludis DSM 18603]
+-MRNKVIAANWNMNDSYLKGLALFSEMLKLVHEeVkGNREIIICPPFIHLHVFGQLSKnhSRISIGAQNAHQSDSDA-----------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------
+>gi|262401201|gb|ACY66503.1| triose phosphate isomerase [Scylla paramamosain]
+-SKRFFVIGNWKMNVDKARIDGIVKMMTAASLS-KHTEVVVGCPSCYLE---------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------
+>gi|337294138|emb|CCB92123.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]
+-----------------------------------QTEWLFALPFSLTSEISSF--PQVSCGAWNLSFAKTGAFTQEVHFSMLRERGASFVILGDRMSRR
+HLDVSDREINVWLLKALERGLSVVV--GLTD----QG----DLYEQIQGVLEGIEpkHLEKVrILLYAG--SLGWNLEDEAEKIAERAKNLRNVLSSLYD
+-DVSRTIKILIEISHFSDDPFAYLSHSSIDGISLSASAIK-----------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 848 2013 2347 579 1598 * * 3956 1167 0
+
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+
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+
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+
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+
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+
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+//
+�HHsearch 1.5
+NAME e8936c77146e6b67b02efb57e9f7dba3
+FAM
+FILE e8936c77146e6b67b02efb57e9f7dba3
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:30:24 2013
+LENG 158 match states, 158 columns in multiple alignment
+FILT 179 out of 719 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCEEEECCCCCEEEHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEECCCEEEEEEEECCCCEEEEECCCEEEECCCCEEHHHCCCCCEEEECCC
+CCCCHHCCCHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECCCCEEEECCEEEECCC
+>ss_conf PSIPRED confidence values
+9775889799977899199999963047978999828899899999999998597589999978998999978981996788799799789999984577
+7761000223233102566189999996685971699859779765999999986459
+>Consensus
+sgCxxxdTxVxxxdxGxxxxIxelxxxxxxxVxsxdxxxxxxxxxxvxxxxxxxxxxxxxIxtxxGxxixxTxxHxxxtxxgwxxaxxLxxGDxixxxxx
+xxxxxxxxxxxxxxxxxxxxxxxxvxxixxxxxxxVYdlxVxxxhxfxangxlVHNsi
+>e8936c77146e6b67b02efb57e9f7dba3
+SGAISGDSLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLGRTIKATANHRFLTIDGWKRLDELSLKEHIALPRK
+LESSSLQLSPEIEKLSQSDISWDSIVSITETGVEEVFDLTVPGPHNFVANDIIVHASI
+>gi|341582094|ref|YP_004762586.1| MCM2/3/5 family DNA replication licensing factor [Thermococcus sp. 4557]gi|340809752|gb|AEK72909.1| MCM2/3/5 family DNA replication licensing factor [Thermococcus sp. 4557]
+----------------DIGSIQ-YSQGIEYSPYlgeSLSAEDGKIKNAPLSRVWrLKAPKELVKVRTITGKELTLTPETKLLTIQngepIWKEAKSLSEG
+DYVATLRKLTV-----------EERGVPILELLKDLDDl----IVYEIkdQVKGLIEEALKELHISKR-
+>gi|298245511|ref|ZP_06969317.1| SpoVR family protein [Ktedonobacter racemifer DSM 44963]gi|297552992|gb|EFH86857.1| SpoVR family protein [Ktedonobacter racemifer DSM 44963]
+-ACLVGESLVL-TEHG-LLRYDELhkrLAEGQS-I---QVASGERQCDVv-SDRHIQRNARTIRLRTRRGLILEGAEGHKLSVGPgQWMELKDVRVGQRI
+PL-------------------------------------------------------------
+>gi|297191963|ref|ZP_06909361.1| YD repeat-containing protein [Streptomyces pristinaespiralis ATCC 25486]gi|197723321|gb|EDY67229.1| YD repeat-containing protein [Streptomyces pristinaespiralis ATCC 25486]
+--SFLPGSLVLMAD-GSKKKIEDVG--LGDKVEVTDPKTGENSDREVVRTIvTEDDKDFVTLTVSTgsGaAELVSTVTHPFWVEsaQAWVDAGDLEPGMD
+LRTADGDQ--------------------VELTALDFfEKRQRTHDLTVAGIHAYFvfAGaePVLVHNmdlnC-
+>gi|126179195|ref|YP_001047160.1| MCM family protein [Methanoculleus marisnigri JR1]gi|125861989|gb|ABN57178.1| intein [Methanoculleus marisnigri JR1]
+----------------------------DMGIAAVDEM-DKMQKEDRSALHEameqQCYDDETEVLTESGWKLfrdvtaddrvatlsadgrleyappsnf
+vaseydgemyyvksrqvdlAVTPNHRMYVNlnrraDEWEgfrliRMDELPIHKRMRfkknaawTGErhethWIPpvvkfanqnaegkltDPitvgmddwl
+eflgyflsEgsvqrhhqtgvpyrviisqtnpesaetirqclerlpfrfsydgknfsinakqlaehLApfgkchekyVPDYAKSLPPEQIgilldalmlgd
+gyinkttgvsiYTTSSRRLADDvtelllkkglsgnvylrreagtvaanprggtstathDifqVTFIRDgqnepnintngkqhIEKRPYkgtiYCLEVPNH
+TLYvrrsgipvwcgNSI
+>gi|309790378|ref|ZP_07684943.1| deoxycytidine triphosphate deaminase [Oscillochloris trichoides DG6]gi|308227570|gb|EFO81233.1| deoxycytidine triphosphate deaminase [Oscillochloris trichoides DG6]
+-RCFSADTRVALVD-GTAPTLEEMARRADngelFWGYSIGPNG-RLIVSLLEQPRYIGRDSLLEVTLDNGEKINCTPDHIFLMRDGREtSADQLRPGDSL
+MPLyRDYhrgyemvyqPLngflnpthrladewntrygiyPDVpgthrhhkdmnRrnnnpWNiErmeasaHIRLhnnvihaFKGIAVRNHKVTAIRSlPGT
+HDVYCLTVPEAGNFALEaGVFVHNC-
+>gi|147898419|ref|NP_001079262.1| indian hedgehog protein precursor [Xenopus laevis]gi|6016351|sp|Q91612.1|IHH_XENLA RecName: Full=Indian hedgehog protein; Short=IHH; AltName: Full=Banded hedgehog protein; AltName: Full=X-BHH; Contains: RecName: Full=Indian hedgehog protein N-product; Contains: RecName: Full=Indian hedgehog protein C-product; Flags: Precursorgi|1147832|gb|AAA85165.1| banded hedgehog protein [Xenopus laevis]
+-GCFPGEALATLES-GEKIPVSQLS--PGLRVLAMDNS-GRPTYSDFLSFLdhsPKEEHMFQVIKTqDPHRRLFLTPAHLIFVSDNYStpasefqavFAS
+SVRPGQYILVSN-----------------------------------------------------------
+>gi|115374273|ref|ZP_01461558.1| hypothetical protein STIAU_0597 [Stigmatella aurantiaca DW4/3-1]gi|310818165|ref|YP_003950523.1| fibronectin type III domain-containing protein [Stigmatella aurantiaca DW4/3-1]gi|115368694|gb|EAU67644.1| hypothetical protein STIAU_0597 [Stigmatella aurantiaca DW4/3-1]gi|309391237|gb|ADO68696.1| Fibronectin type III domain protein [Stigmatella aurantiaca DW4/3-1]
+-----------MLHDGTELPAEML--RPGMRVLTMLEDGAEGGVYEVVHVGRHS-SARVKVVTVDGRVVVVTPNHRWRTCErGWVRSDELVRGDTIDG--
+--------------------FAPSRVARVEPFDSGEVIKISVDVARTFIVKGLLAHN--
+>gi|115380366|ref|ZP_01467366.1| putative cell surface protein [Stigmatella aurantiaca DW4/3-1]gi|310822206|ref|YP_003954564.1| hypothetical protein STAUR_4959 [Stigmatella aurantiaca DW4/3-1]gi|115362632|gb|EAU61867.1| putative cell surface protein [Stigmatella aurantiaca DW4/3-1]gi|309395278|gb|ADO72737.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
+ASCYTPEQKIRFPE-GD-VAIVEAVAGMKKNVVTLTPDssldAIALQTNKtysYTAEFRDTEHPIVNLLMASGGKLTVTKEHPLINSEGRlVTAQTVKVG
+DELV--------------------KVDGSFDPIVRVEHTTHfGKVYNLRpdtdDRVSNILVAEGYLVGSS-
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+ 72 5007 5853 2269 335 327 2303 8349 1226 3680
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+ 476 1977 5214 3718 114 4179 82 7130 1870 4684
+
+L 108 5578 5594 * * 5000 4163 4317 2580 * 2117 5335 * 5680 3750 3733 * 5501 2943 3692 * 108
+ 146 3377 * 2782 227 * 0 7220 1251 4591
+
+S 109 4588 * 2570 4231 5000 5354 * 3985 3836 3459 * 3810 3178 4165 5183 3440 4678 5501 4694 * 109
+ 323 2488 5485 1828 477 5087 43 7220 1673 4591
+
+P 110 3259 * 4045 2968 * 4459 * 5430 4509 3070 * * 3181 5246 4624 4566 2746 4018 * 4461 110
+ 146 3794 5372 1571 592 5747 27 6885 1221 4577
+
+E 111 4109 * 3853 2891 * 5505 5426 * 3234 5840 6520 * 1979 4677 5764 3131 5457 * * 3183 111
+ 37 5318 * 2000 415 4775 54 6907 1000 4578
+
+I 112 3472 5960 4117 5421 5310 5584 6688 2315 4357 2668 * 4506 * 5801 4869 * 4449 2266 * * 112
+ 27 5747 * 3902 100 5656 29 6976 1080 4475
+
+E 113 4828 * 5450 3444 5671 * 5035 * 1902 * 5766 4058 4336 3450 2258 4020 4568 * * * 113
+ 36 5332 * 1585 585 5231 39 7012 1021 4420
+
+K 114 5033 * 6790 3613 4628 4267 4584 5945 3445 2245 * 3102 3712 4372 4383 4210 5602 * * 4010 114
+ 301 3312 3514 2655 250 4117 86 7072 1363 4347
+
+L 115 * * * 3313 3974 5623 * 3040 * 1172 5641 5597 5796 5496 * * 5780 3028 * 5141 115
+ 464 2129 4428 3508 133 2304 326 6866 2163 4419
+
+S 116 2489 5932 4368 4179 5399 4600 * 3741 4788 5913 * 5751 3174 * 5059 3493 2862 3433 * 5007 116
+ 12 * 6902 * * 3026 189 7212 0 4107
+
+Q 117 3921 * 4253 3514 4166 3940 * 6044 3550 5125 * 2746 3219 3757 3414 4466 4717 5712 * 5855 117
+ 73 4341 * 6260 19 2960 198 7020 1228 3843
+
+S 118 3942 * 4773 3700 * 2136 6379 5786 4691 6332 * 4432 6221 6255 4835 1677 4823 4527 6235 * 118
+ 79 5959 4746 0 * 3767 110 7165 1014 3528
+
+D 119 4861 * 2082 3609 4871 3916 4785 5757 5736 4044 6689 3387 5043 4459 4162 4163 4237 3896 * * 119
+ 52 * 4829 * * 1612 572 7157 0 3552
+
+I 120 5332 5796 * 6251 4053 3442 5960 2285 4874 2783 * 5393 4785 * * 6826 4166 2021 * 5639 120
+ 117 4121 5593 3889 101 2568 266 7510 1297 2951
+
+S 121 3205 6469 6290 4463 4389 4785 5302 3750 3310 6130 * 4307 * 6730 3901 3707 3009 4396 * 2754 121
+ 11 * 6995 * * 2595 261 7760 0 2779
+
+W 122 5559 5564 * 5688 2862 7459 4596 4390 4632 3079 5951 3832 4058 * * 5726 3871 4605 2283 3897 122
+ 35 * 5398 * * 2790 225 7835 0 2558
+
+D 123 3841 * 2635 2708 * 4445 4624 6043 4863 4954 * 5952 5304 6981 5942 3174 3564 2628 * 5313 123
+ 33 * 5449 2322 322 1239 795 7910 1073 2545
+
+S 124 4400 5900 * 3431 6277 6206 * 5018 2716 5209 7965 6715 5455 4600 2617 3287 2632 3665 * 5412 124
+ 36 6446 6241 0 * 728 1336 7788 1013 2080
+
+I 125 * * * * 4863 * * 1856 5223 3667 6743 * 5118 6706 * 4679 * 1008 * * 125
+ 44 5570 6798 2109 380 3224 163 7931 1089 1483
+
+V 126 3578 6465 4020 3744 * 4440 6272 3674 3293 4732 * 5545 * 5377 3829 3962 3332 2236 * * 126
+ 0 * * 0 * 2015 410 7908 1073 1569
+
+S 127 3796 * 4805 2958 7112 3426 * * 3418 * * 3522 * 4009 3492 1812 5812 5104 * * 127
+ 0 * * * * 2122 377 7939 0 1413
+
+I 128 4557 6772 6486 * * * 7290 1100 5148 2943 5989 5291 * * 6173 6365 5131 2250 * * 128
+ 26 5802 * 442 1922 2734 235 7976 1084 1302
+
+T 129 4019 * 3554 1663 7557 5255 6452 5763 3987 7202 6672 4726 5672 * 3444 3207 4057 5155 6412 4682 129
+ 68 7006 4697 1585 585 * 0 7975 1000 1246
+
+E 130 3918 4481 3844 2888 5205 5869 4836 3970 5144 5441 4864 4773 3233 4840 4229 3849 4884 5576 * 3319 130
+ 314 2408 7146 847 1171 3370 147 7890 2407 1593
+
+T 131 4256 * 3504 4559 5360 4632 6707 3197 4762 2544 6194 6771 3131 5840 * 4519 3534 3207 * 4932 131
+ 154 3436 6827 4182 82 2748 232 7867 1605 1716
+
+G 132 5098 5784 4232 3418 6330 1320 7831 * 4198 * 6718 4036 3887 5407 4608 4337 4548 * * 4677 132
+ 160 3256 * 1125 885 * 0 7861 1734 1691
+
+V 133 5567 * 6268 2727 6342 6729 4077 5934 3259 3689 * 5949 4059 5006 4281 4514 3564 2880 * 3149 133
+ 319 2334 * 452 1894 2393 305 7861 2701 1691
+
+E 134 4167 * 3872 2325 6166 3269 3869 4874 3755 * * 6633 5991 3004 4112 4995 3447 4298 * * 134
+ 131 3636 7236 204 2925 2277 333 7858 1566 1549
+
+E 135 5482 * 2719 3510 4598 * 4630 4381 3301 6005 4644 4379 3689 4585 3609 * 3459 * 5647 3457 135
+ 10 7148 * 0 * 2096 384 7878 1000 1557
+
+V 136 4706 6759 * * * * * 3860 * 4485 4600 * * * * 5923 2924 623 * * 136
+ 0 * * * * 1823 479 7905 0 1412
+
+F 137 * 5461 * * 2819 * 6800 6149 * 6352 6853 * * * 4587 * 7305 6194 7070 469 137
+ 0 * * * * * 0 7913 0 1276
+
+D 138 * 6290 923 6307 * 7681 5323 * 5806 * * 1613 * * 7206 4150 6714 * * * 138
+ 61 4587 * 3738 112 * 0 7913 1271 1276
+
+L 139 6010 * * * 3140 * * 1957 * 863 7741 * 6300 * * * * 4430 * * 139
+ 37 5320 * 630 1499 2001 415 7897 1162 1389
+
+T 140 4809 7058 4868 2017 7499 6181 6351 5169 5662 * 5354 7013 * 3541 4368 2979 2036 5477 5090 7067 140
+ 38 6919 5802 2000 415 * 0 7911 1046 1274
+
+V 141 5307 6666 6800 6865 6698 * * 2857 5963 3253 4514 * * * * * 4695 746 * * 141
+ 18 * 6363 * * 1519 619 7926 0 1458
+
+P 142 3315 * 2946 1917 * 5761 * * 3879 * 6777 4675 2403 6145 4306 3904 4929 * * 5882 142
+ 0 * * * * 2483 284 7897 0 1349
+
+G 143 5298 * 2479 3695 6845 1854 6207 * 3475 * * 3627 3633 6181 4909 4665 4931 5031 * 5808 143
+ 0 * * * * * 0 7911 0 1274
+
+P 144 3691 * 4526 5867 5591 3939 4742 6374 6259 3278 * 2858 4249 * * 3489 2472 6015 * 2887 144
+ 212 2998 6456 868 1145 573 1609 7911 1976 1274
+
+H 145 6867 6689 6307 4254 6642 4841 744 6289 5354 6819 6892 4129 6376 5424 5346 5038 5752 6694 * 4494 145
+ 15 * 6642 * * 1217 811 7861 0 1125
+
+N 146 3845 3924 6249 6282 5775 6451 * 6849 * 4487 * 1334 6749 6003 5355 3899 2238 5849 6713 8054 146
+ 0 * * * * 1229 803 7865 0 1124
+
+F 147 * * 6737 6324 808 * 7717 6883 * 4223 6638 * * * 7332 * * 5022 6863 1814 147
+ 19 7772 6883 0 * * 0 7993 1004 1038
+
+V 148 4402 * * 4700 2060 6706 * 2573 * 2724 5609 * * * * * 4975 2222 * 3666 148
+ 104 3841 * 784 1254 * 0 7967 1501 1189
+
+A 149 992 6083 * * * 5234 * 5700 * 4599 6300 * * * * 4639 4046 1985 * 5095 149
+ 156 3290 * 1176 844 821 1205 7857 1945 1189
+
+N 150 6251 6913 4969 3491 6876 2503 * * 5560 * 7030 998 5025 4487 6892 4843 6045 6694 * * 150
+ 154 3302 * 968 1032 * 0 7882 1761 1038
+
+D 151 5155 * 3544 3870 * 736 6986 * 5731 * * 3610 5349 7243 4861 4536 * * * * 151
+ 53 4787 * 1766 502 * 0 7885 1206 1038
+
+I 152 4492 * * * 2588 6305 5021 2153 * 2152 * * * * * 5180 6478 2141 6858 5518 152
+ 29 6171 7338 1000 1000 * 0 7885 1041 1038
+
+I 153 5898 * * * 4501 * 6275 2108 6709 1544 4360 * * * * * 5268 2139 5130 6447 153
+ 0 * * * * * 0 7877 0 1178
+
+V 154 3659 * * * * * * 4464 * 3555 * * 6677 * * 3719 4430 603 * * 154
+ 62 4563 * 750 1303 * 0 7877 1270 1178
+
+H 155 5916 6481 * 7256 * 5249 212 * * * * * * * * 4545 * * * 4923 155
+ 74 4320 * 3319 152 0 * 7595 1276 1178
+
+A 156 5698 * * 5582 * 6858 * * 6017 * * 135 * 6171 * 6462 * * * * 156
+ 21 6143 * 3823 106 * * 7609 1051 0
+
+S 157 3787 2580 4544 5886 * 6436 * * 4907 * 5266 * * * 5734 1324 2242 * * * 157
+ 64 4522 * 1000 1000 * * 7407 1000 0
+
+I 158 * * * * 3004 * * 272 * 4413 * * * * * * * * * * 158
+ 0 * * 0 * * * 5033 0 0
+
+//
+�HHsearch 1.5
+NAME eb17077e5768f21bb26c456637a41be1
+FAM
+FILE eb17077e5768f21bb26c456637a41be1
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:16:11 2013
+LENG 247 match states, 247 columns in multiple alignment
+FILT 110 out of 183 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.5
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEECCEEEEECCCCHHHHCCCCCCCCC
+CEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
+HHCCCCCCCCCCCEEECCCCCEEEEEEHHHHHHHHHHHHHEECCCCC
+>ss_conf PSIPRED confidence values
+9489847997464999999999984758868996730899888877899999838999899999879779999998998899479963540056789987
+3588879999899998738870036408999999999996699179999999999996636662999999996521377898899999965999999999
+85389987689623654899889996678878866406433055779
+>Consensus
+xvxfxxxxatxxxYxxFIxxLRxxlxxxxxxxgiPvlxxxxxxxxrxxxVxLxxxxxxxvtLaixxxnlYvvGfxxxxxxyxFxdxxxxxxxxxlfpxxx
+xxxxLxfxgsYxxLxxxagxxrxxixLGxxxLxxAixxLxxxxxxxxArxLlvxIqMvsEAaRFxxIxxxvxxxxxxxxxpxxxxxsLexnWxxlSxxIx
+xxxxxxgxfxxpvxlxxxxxxxxxvxxvxxxxxxxxxxlxxxxxxxx
+>eb17077e5768f21bb26c456637a41be1
+DVSFRLSGATSSSYGVFISNLRKALPNERKLYDIPLLRSSLPGSQRYALIHLTNYADETISVAIDVTNVYIMGYRAGDTSYFFNEASATEAAKYVFKDAM
+RKVTLPYSGNYERLQTAAGKIRENIPLGLPALDSAITTLFYYNANSAASALMVLIQSTSEAARYKFIEQQIGKRVDKTFLPSLAIISLENSWSALSKQIQ
+IASTNNGQFESPVVLINAQNQRVTITNVDAGVVTSNIALLLNRNNMA
+>gi|132576|sp|P24476.2|RIP0_DIACA RecName: Full=Antiviral protein DAP-30; AltName: Full=Dianthin 30; AltName: Full=Ribosome-inactivating protein; AltName: Full=rRNA N-glycosidase; Flags: Precursor
+AYTLNLANPSASQYSSFLDQIRNNVRDTSLIYGgtdVAVIGAPSTT-DKFLRLNFQGP-RGTVSLGLRRENLYVVAYLAMDnanvnRAYYFknQITSA--
+ELTALFPEVvvaN-QKQLEYGEDYQAIEKNAKITtgdqsRKELGLGINLLITMIDGVNKKvrVVKDEARFLLIAIQMTAEAARFRYIQNLVTKNFPNKFD
+SENKVIQFQVSWSKISTAIFG-DCKNGVFNKDYDF--------------------------------
+>gi|204307504|gb|ACI00278.1| trig7 [Hordeum vulgare]
+TATFNVQASSAD-YATFIAGIRNKLRNPAHfSHNRPVLPPvePNVPPSKWFHVVLKASPTSAgLTLAIRADNIYLEGFKSSDGTW-W------ELTPGLI
+PGAT---YVGFGGTYRDLLGDTD-KLTNVALGRQQLADAVTALHGRtkadkasgPKQQQAReAVTTLVLMVNEATRFQTVSGFVAGLLHpKavekkSGKI
+GNEMNAQVNGWQDLSAALL--KTDVkpppgkspAKF-API-------EKMGMRTAEQAANTLGILLFVEV----
+>gi|256783605|ref|ZP_05522036.1| secreted protein [Streptomyces lividans TK24]gi|289767488|ref|ZP_06526866.1| secreted protein [Streptomyces lividans TK24]gi|289697687|gb|EFD65116.1| secreted protein [Streptomyces lividans TK24]
+-----------PHYRSVVQQLRR--GAGHLIHGNNIYETmGQGQNAGLVALNLYNADwVHQTTLYFNASNLYLVGFKSRtGQAYLFSDASA-NAREEVgr
+eVRGAP-VTTLPFAGSYTSLVNTlPGAETEPTTIGIYAIQTNMEALARTpNpaaatgayRGSIARAMLIMIGAFAEAARFPMFRDHFEAAFRRfanpSVV
+VTPTMQALRTAWGQMSRWVQ--QLVSGPPPTPAVFG-------------------------------
+>gi|295701322|ref|YP_003610323.1| ribosome-inactivating protein [Burkholderia sp. CCGE1002]gi|295441645|gb|ADG20812.1| ribosome-inactivating protein [Burkholderia sp. CCGE1002]
+--EFSVDFTSPQKYVQSLGAIRAAMGDAMSLTNIPGnkilyqLRPDASNIVEGVTIEIIGvgrnnsPSNRDVRFVINPSDLYLTGFIVGRIFYRFSDFSD
+T-ASGRVQVNAPRhlvdfTIDMTVDSSYLSLARSAGVSADRTDLSIDrySLMKGYrdliNHVSSTrtINGAEARALLSYATVLSEAVRFRSIQGNFASTa
+LgDDAFTP--YRLSLEDsnrttRWDRLSDEIR--KAHYGAI----KIATHGAAPILLANVRD-----------------
+>gi|242071645|ref|XP_002451099.1| hypothetical protein SORBIDRAFT_05g024110 [Sorghum bicolor]gi|241936942|gb|EES10087.1| hypothetical protein SORBIDRAFT_05g024110 [Sorghum bicolor]
+----------------------------------------------------------------------------------------------------
+----------------------------VEDLDEAISSLSLFptgnaTEEDVSRGLAACDAMVAAAATFLYVERRMSAGMWDgnGVSNDGSLRRLQESRP
+DLSAAVQ--DSYQGAFAAPVALQRSNGERVLVDNMRRAVP--------------
+>gi|254385328|ref|ZP_05000657.1| hypothetical protein SSAG_05020 [Streptomyces sp. Mg1]gi|194344202|gb|EDX25168.1| hypothetical protein SSAG_05020 [Streptomyces sp. Mg1]
+PVSFSVAHASVGDYRLLASSIRSRAALA---QCLPGRAGNEEVSARYLPVRIQLR-GLFielfIELRTQNSVLRITGFRNTFENW---QAPPEGRFRHVr
+davaPPGVHHAEALSFEGEVPALEAAAEVGRTGLSLGRRPMMKAVMWLHRNtDPKCTALGMLVLGEMLCEAASSPVLAQEMSRIW---------------
+---------------------------------------------------------
+>gi|157108298|ref|XP_001650164.1| hypothetical protein AaeL_AAEL005004 [Aedes aegypti]gi|108879337|gb|EAT43562.1| hypothetical protein AaeL_AAEL005004 [Aedes aegypti]
+----------DRAYLGFIQNLISALTESDEVYGnIKVTKRK----DGITKVTLKDS-STnsQVGFIYRNRDLYIVGLVVGTTFYIDKEVYDGlgkkipTT
+WKgVINAAN--TVSLSNPFSYNQILPS----GEGTVLQIGKLGDSLTHLTKIgDtSKrsqIMTQHLGPFVVAFSEAIRFPVVAREIQGAIRKatgtvSLs
+knlvrplslgHPSertsnhvFTMYSLLLNWSKLSDRVP-----------------------------------------------
+>gi|77553788|gb|ABA96584.1| Ribosome inactivating protein [Oryza sativa Japonica Group]
+---IDVTDPTQGGYTTALNSIRERDQEraGQnTFHGVAIT--S--LNKQWRRINLVHQDRPTVSLLIDESNGYLVGFRRGDGtWMHFNDQE-----LPNV
+PGTEQrvpGIPIQLSSSYMNLIKD--NERPYFSVGRQSLRHSYFVLLNYDaevdlrsamMKRQRKALTQLIILFCEAARIRPVLEFISEAMSTeDTTPlD
+ETLWTWIKNWSTLSRFA------------------------------------------------
+>gi|47496961|dbj|BAD20031.1| hypothetical protein [Oryza sativa Japonica Group]gi|47497865|dbj|BAD20039.1| hypothetical protein [Oryza sativa Japonica Group]
+-------RGTKNTYASLVSSIVTRITTRAMatVEGKPVCGPSG-----YFEIILFPkpgtqfaakHANGRVRLLFNYQNLYLVAFKVQGKWHKFKDLTPK
+IA-----PDYASikrkkhceAKNLPFESNYGVRGMAANLaqLkvSRQTPLQIYKML----SLYDPehnagmvRLSDLQKMLFKTCAVFPEVFRFPLLKKR
+VVYLMgktaDEESTVGEQHTDLFQNWGDCCMALR--MGR-QAFTPMADL--------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+D 1 * * 2471 * * * * 4512 4252 5215 * 2839 2995 * * 3715 1494 * * * 1
+ 0 * * * * * * 5016 0 0
+
+V 2 4547 * 5748 6092 4453 * * 2629 * 4498 * * 5599 * * 5628 * 663 * * 2
+ 0 * * * * * * 5373 0 0
+
+S 3 * * * 3275 6479 5714 * 5959 5182 5748 * 3600 5648 * 3639 1720 1736 5820 * * 3
+ 104 * 3840 * * * * 5741 0 0
+
+F 4 * 5524 * * 448 * * 5119 * 2601 * * * * 5867 * * * 5815 5900 4
+ 0 * * 0 * 0 * 5911 1268 1268
+
+R 5 5268 * 2016 4514 * * 5215 * 4823 * * 2311 * * 5358 2231 2696 * * 5178 5
+ 0 * * * * * * 5971 0 0
+
+L 6 6382 5387 * * * * * 4076 * 1560 6350 * 5640 5856 * * 2473 1642 * 6019 6
+ 22 * 6019 * * * * 5971 0 0
+
+S 7 2800 * 2716 3354 * 3373 5080 6459 4284 5142 * * 5922 3860 * 2792 3585 3714 * * 7
+ 120 5800 4016 0 * 0 * 5971 1011 1012
+
+G 8 5146 * 4219 5379 4084 2103 4552 * 4155 6291 * 3629 5424 6064 3446 2885 3098 * * 5173 8
+ 34 5424 * 483 1814 0 * 6032 1102 1174
+
+A 9 1233 6488 6086 6024 5966 3934 * 6339 4852 4430 * * 3827 * * 2951 3464 5419 * 4478 9
+ 13 * 6787 * * * * 6215 0 0
+
+T 10 6186 * 3010 5462 * 4170 * * 5059 * * 4705 * * 5819 2841 876 6229 * * 10
+ 20 * 6163 * * * 0 6274 0 1000
+
+S 11 2760 5498 4263 3661 * 3576 * 5072 3372 * * * 3265 4278 3956 2843 6595 3488 5728 6469 11
+ 53 5261 6646 575 1605 0 * 6453 1073 1064
+
+S 12 3353 * 3198 3817 * 3056 * 5798 2860 5765 * 3669 5785 3206 4777 3129 4795 * * 4801 12
+ 31 * 5550 * * * 0 6643 0 1000
+
+S 13 4280 * 3763 4701 * 4089 5770 5628 3166 * * 3847 4957 6614 4858 2159 2128 5123 * * 13
+ 0 * * * * 0 * 6634 0 1132
+
+Y 14 * * * * 4590 * * * * * * 5628 * * * * * * * 92 14
+ 0 * * * * * * 6673 0 0
+
+G 15 3418 * 6237 4204 6560 4386 * 5877 3935 4598 * 3559 6439 5429 2726 2393 2805 4250 * * 15
+ 0 * * * * * * 6691 0 0
+
+V 16 4208 * 2444 4974 * 5099 6863 * 4650 3635 * 4123 6439 4033 5360 2340 2332 5533 * * 16
+ 0 * * * * * * 6691 0 0
+
+F 17 5816 * 6230 * 489 * * 5642 * 3022 * * * * * 4550 * 4263 * 5752 17
+ 0 * * * * * * 6691 0 0
+
+I 18 5865 * * * * * * 889 * 1859 4104 * * * * 5642 4975 4127 * * 18
+ 0 * * * * * * 6691 0 0
+
+S 19 3641 * 3755 3397 * 4115 * 6076 2939 * * 3021 * 3398 3868 3347 2738 6234 * * 19
+ 0 * * * * * * 6676 0 0
+
+N 20 3337 * 3606 3339 * 4406 * * 3467 5269 * 2785 * 4111 4067 2083 4895 5358 * * 20
+ 0 * * * * * * 6676 0 0
+
+L 21 * * * 6242 4861 * * 2038 * 766 5351 * * * * * * 3620 6062 * 21
+ 0 * * * * * * 6676 0 0
+
+R 22 * * * * * 5829 * 4431 5643 * * * * 5507 223 * 5890 5598 * * 22
+ 0 * * * * * * 6676 0 0
+
+K 23 3585 * 2483 2874 * 4300 * 6561 3196 * * 2776 * 6827 4904 3366 3337 4421 * * 23
+ 68 * 4434 * * * * 6676 0 0
+
+A 24 2292 6187 4612 3617 6490 5369 6841 5363 3347 4221 * 4351 * 3036 2359 5909 4471 6398 * * 24
+ 0 * * * * 1570 593 6605 0 1221
+
+L 25 3281 * 5789 * 5495 * * 3696 * 963 5177 * * * * * * 2064 * * 25
+ 77 5605 4995 0 * 0 * 6614 1086 1122
+
+P 26 2226 * * 3968 * 3215 * 5432 2895 6018 * * 4372 4247 4566 3402 2672 4414 * * 26
+ 0 * * * * 0 * 6667 0 1150
+
+N 27 5160 * 2411 3227 4977 3959 5831 4829 4146 4630 * 3642 6730 5318 4166 2852 3311 5508 * * 27
+ 143 4602 4232 2042 401 * * 6679 1149 0
+
+E 28 3077 * 5035 4998 * 1809 4373 * 3530 * * 4782 2528 5264 4808 4016 4918 * 5807 6041 28
+ 103 4796 4921 566 1624 0 * 6603 1161 1258
+
+R 29 3180 * 4207 5385 * 3626 4792 * 5095 4755 5964 4026 3320 4519 4042 3307 2396 6905 * 4412 29
+ 146 3657 5901 1532 612 * 0 6594 1367 1136
+
+K 30 * * 4528 2617 5258 * 3909 4944 3721 2815 4834 4278 3991 5406 4729 4083 4185 3564 * 4602 30
+ 718 1535 4413 746 1309 2083 388 6554 2805 1302
+
+L 31 3529 4699 * 6837 4026 * 5363 3281 5063 3959 6821 * 4603 6472 4193 2000 * 2386 * 5263 31
+ 128 3554 * 1299 752 0 * 6701 1870 1548
+
+Y 32 4066 3690 4974 3581 6950 5442 1821 * 6624 4978 * 4057 6706 4234 * 5234 4757 6349 * 2375 32
+ 60 4617 * 816 1211 * * 6805 1183 0
+
+D 33 * 5219 3330 4591 * 992 * * 6962 6818 * 2371 * 6668 * 4499 4605 6318 * 6451 33
+ 197 2968 * 1008 992 * * 6805 1793 0
+
+I 34 * * * * 5513 * 5650 856 4879 2618 4991 5912 * * 3791 6349 5255 4321 * * 34
+ 20 6213 * 1000 1000 * * 6805 1003 0
+
+P 35 5009 * * * 6190 5899 * 6474 4086 5547 * 5174 579 5675 4330 5577 6890 5418 * 5163 35
+ 12 * 6956 * * * * 6805 0 0
+
+L 36 4546 * * * 6633 4490 * 3323 5566 3036 3617 * * * 4794 * 5739 934 * * 36
+ 21 6125 * 2585 263 * 0 6802 1019 1000
+
+L 37 6460 4315 * * 6247 6178 * 3306 * 776 4171 * * * 5933 5948 3205 6255 * 5906 37
+ 107 4820 4795 1169 849 0 * 6802 1298 1000
+
+R 38 2857 * 4654 5355 * 4921 6339 * 3132 5561 * 4857 2059 6455 2087 4933 5744 4748 * 7076 38
+ 22 6026 * 0 * * 0 6763 1017 1190
+
+S 39 3514 * 4875 4696 * 4330 6830 5413 3582 4551 * 4197 2150 4479 4159 2884 3612 4888 * * 39
+ 737 1322 * 1131 880 0 * 6763 3461 1190
+
+S 40 4692 * 4171 5001 * 4118 5483 * 5416 * * 4251 1960 3822 5218 2888 2245 5792 * * 40
+ 194 6763 3101 0 * * * 6807 1000 0
+
+L 41 3332 * 4924 3992 6514 4625 * 4416 6040 3374 * 5156 3525 4899 * 4789 2603 2108 * 6170 41
+ 229 5758 2966 0 * 3283 156 6550 1023 1689
+
+P 42 3230 * 3638 3159 * 3880 * 6326 5150 4877 6940 3896 2623 4050 5620 2807 4564 4618 * 6125 42
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+
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+
+//
+�HHsearch 1.5
+NAME eb75493f078d95ea52db97600717baa3
+FAM
+FILE eb75493f078d95ea52db97600717baa3
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:04:12 2013
+LENG 129 match states, 129 columns in multiple alignment
+FILT 3 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCEECCHHHHHHHHCCEEEEEEEECCCC
+HHHHHHHHHHHHCCCCCCHHHHHHCCCCC
+>ss_conf PSIPRED confidence values
+9862189999369856469951244303889862476030248888877155666506899962501356537785428998864165266567860761
+89999997776416985067786435779
+>Consensus
+asnxxxfvlvdnggtgxvtvxpxxxangvaewisxnsrsqaykvtxsxrxsxaxxrkytikxevpkvxtqvxxgvelpvaawrsyxxmeltipifatxdd
+xxxixkalxgxfkxgnpixxaiaaxsgxy
+>eb75493f078d95ea52db97600717baa3
+ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVDLPVAAWRSYLNMELTIPIFATNSD
+CELIVKAMQGLLKDGNPIPSAIAANSGIY
+>gi|435743|gb|AAC60713.1| alpha-atrial natriuretic factor/coat protein [synthetic construct]
+ASNFEEFVLVDNGGTGDVKVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSANNRKYTVKVEVPKVATQVQGGVELPVAAWRSYMNMELTIPVFATNDD
+CALIVKALQGTFKTGNPIATAIAANSGIY
+>gi|83642763|dbj|BAE54359.1| coat protein [Enterobacteria phage SD]
+---matLRSFVLVDNGGTGNVTVVPVSNANGVAEWLSNNSRSQAYRVTASYRASGADKRKYTIKLEVPKIVTQVVNGVELPISAWKAYASIDLTIPIFAA
+TDDVTTISKSLAGLFKVGNPIADAISSQSGFY
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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+
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+
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+
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+//
+�HHsearch 1.5
+NAME ec6d5b33f2ae17f54335ee8fce56e790
+FAM
+FILE ec6d5b33f2ae17f54335ee8fce56e790
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:34:29 2013
+LENG 83 match states, 83 columns in multiple alignment
+FILT 101 out of 1081 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.8
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCEECCCHHHHHHHHCCCEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEECCCEEEECCEEEEECCEEEEEEC
+>ss_conf PSIPRED confidence values
+97543566536144649999987799899999499599999999868752898438999569818796689994998999969
+>Consensus
+xxxxxmxxxxxxxxxpxxxLxxxxxkxVxVxlxxgxxxxGxLxxxDxxmNlvLxdxxexxxxxxxxxlxxvxIRGxxIxxIxx
+>ec6d5b33f2ae17f54335ee8fce56e790
+GSVIDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP
+>gi|145524719|ref|XP_001448187.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|124415720|emb|CAK80790.1| unnamed protein product [Paramecium tetraurelia]
+--------------GYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLDKEQKIKIIciqalsnVTDQLVDIGQAIVRGNSIIM---
+>gi|327352187|gb|EGE81044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis ATCC 18188]
+-------------SGPLSILQTATRshAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEkpkggkgkgvNKDRFVSKMYVQTNTCLLA--
+>gi|254567285|ref|XP_002490753.1| Core Sm protein Sm D3 [Pichia pastoris GS115]gi|238030549|emb|CAY68473.1| Core Sm protein Sm D3 [Pichia pastoris GS115]
+-------------SIPVKLLNEAQGHIISAELTSGESYRGKLVESEDSMNIQLKDVTLTAQDGKVSHMEQIFIRGSQIRFFS-
+>gi|15920525|ref|NP_376194.1| hypothetical protein ST0326 [Sulfolobus tokodaii str. 7]gi|342306150|dbj|BAK54239.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
+----------------ATELNSLLDKAIVVRLINNKIYYGTLSSYElSPFILTLTNAKDN----DNNTYYKVILNGNSITEI--
+>gi|254585839|ref|XP_002498487.1| ZYRO0G11462p [Zygosaccharomyces rouxii]gi|238941381|emb|CAR29554.1| ZYRO0G11462p [Zygosaccharomyces rouxii]
+-----------------PLLKDYLHRRVLVITTAGDCIVATLEGFDKNTNVVISDVVDRCTLRPM--AMAQAVRGSEIVAMG-
+>gi|307105968|gb|EFN54215.1| hypothetical protein CHLNCDRAFT_24936 [Chlorella variabilis]
+--------------LFYSYFKTLVGKEVTVELKNDLAITGTLHSVDQYLNIKLNNIRVVNEQKypHMLSVRACFVRGSVVRYVQ-
+>gi|121710344|ref|XP_001272788.1| LSM domain protein [Aspergillus clavatus NRRL 1]gi|119400938|gb|EAW11362.1| LSM domain protein [Aspergillus clavatus NRRL 1]
+---------------AVRYLESLIGQTLRVHATDTRMFVGTFKCTDAERNIILGNTYEYRFpsssaikdaaaktndgeevvapperrniklDMTSRFIGL
+VVVPSQHITKI--
+>gi|307186087|gb|EFN71819.1| U7 snRNA-associated Sm-like protein LSm10 [Camponotus floridanus]
+----------HFLYNSLSILLKAVEKqRTIIDLRNEASIFGIVEQTDAYMNVVMRDCVFTDPREDSFKFDMFFVQARNIRCV--
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+G 1 * * * * * 0 * * * * * * * * * * * * * * 1
+ 0 * * * * * * 1000 0 0
+
+S 2 * * * * * * * * * * * * * * * 0 * * * * 2
+ 0 * * * * * * 1000 0 0
+
+V 3 * * * * * * * * * * * * * * * * * 0 * * 3
+ 0 * * * * * * 1000 0 0
+
+I 4 * * * * * * * 0 * * * * * * * * * * * * 4
+ 0 * * * * * * 1000 0 0
+
+D 5 * * 1000 * * * * * * * * 1000 * * * * * * * * 5
+ 0 * * * * * * 1578 0 0
+
+V 6 * * * * * * * * * * 127 * * * * * * 3569 * * 6
+ 0 * * * * * * 3901 0 0
+
+S 7 1363 * * * * * * * * * * * * * * 950 3414 * * * 7
+ 277 2517 * 0 * * * 3901 1111 0
+
+S 8 2466 * 2351 * * * * * 2508 * * 3303 * * * 3569 2439 3696 * * 8
+ 659 1448 * 305 2393 * * 3901 1343 0
+
+Q 9 * * * * * 4075 * * 2992 * * * 3806 1188 3194 3917 2952 * * * 9
+ 99 3919 * 1000 1000 * * 4680 1003 0
+
+R 10 * * * * * 3060 * * 1484 * * * * * 2131 3915 2133 * * * 10
+ 370 3013 3291 1585 585 * * 4785 1235 0
+
+V 11 2558 4003 4130 * * * 3870 * 3388 4145 * 4447 4249 3177 * 4183 3061 4538 * 3981 11
+ 0 * * 0 * * 0 5080 1000 1104
+
+N 12 3607 4628 4414 * 4303 * * 4367 5114 * 2635 3128 * 2994 * 2674 3199 * * 4787 12
+ 0 * * * * 0 * 5542 0 1104
+
+V 13 4753 * * * * 4986 * 3659 * 3348 5126 3503 3106 3850 3975 4687 2684 2369 * * 13
+ 88 * 4084 * * * * 6094 0 0
+
+Q 14 * 4622 5553 2522 5594 3545 4347 3761 4116 3629 4361 5677 * 4477 * 3214 3617 3935 * 5132 14
+ 54 6088 5502 1000 1000 0 * 6574 1000 1115
+
+R 15 4179 5838 4446 3396 * 3102 * 3693 4972 3147 * 2577 5738 4829 6402 3428 3575 5802 * 5657 15
+ 0 * * * * 0 * 6829 0 1012
+
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+ 24 * 5941 * * * * 7026 0 0
+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 47 4962 * 406 2027 * * 7620 1224 0
+
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+
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+
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+ 32 5504 * 1000 1000 * * 7628 1088 0
+
+K 31 5937 6560 4251 2027 5653 * 4472 3666 2743 4049 6582 4740 * 5310 4159 5368 3853 4365 4745 6220 31
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+
+L 32 4985 5208 * * 5633 * * 5305 * 796 3657 * 6285 6518 * * 2326 7048 * 6636 32
+ 15 * 6560 * * * * 7628 0 0
+
+K 33 5068 6408 4945 * 7113 * 5897 5470 1970 5519 * 3374 * 5132 2228 3606 3561 3510 * 6766 33
+ 16 * 6508 1000 1000 0 * 7617 1012 1012
+
+G 34 4487 * 1669 4409 5538 3762 5105 5717 6553 * * 1722 * * 6213 4347 4722 * 5332 6457 34
+ 63 4889 6818 2000 415 0 * 7619 1212 1003
+
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+
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+
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+
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+
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+
+H 48 4420 6196 4439 * 2476 6937 3078 * * 4716 * 3124 6430 4225 4155 5467 4713 6576 5163 2223 48
+ 26 5814 * 1000 1000 * 0 7579 1038 1129
+
+M 49 5545 3761 * * 3375 4745 * 6682 6534 2816 1374 * 5814 4778 * 4926 4657 4136 4670 * 49
+ 0 * * * * * 0 7579 0 1129
+
+N 50 * * 5478 5814 * 6206 * 6430 * * * 132 * * * 5501 * * * * 50
+ 0 * * * * * 0 7579 0 1129
+
+L 51 * 5591 * * 4776 * * 1937 * 1608 2621 * * * * * 4915 2664 * * 51
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+
+V 52 4820 4680 6371 * 6704 * 5490 2956 4924 3520 5024 6080 * 4808 6330 4547 4213 1236 * 5805 52
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+
+L 53 * * 6078 * 5139 * * 3766 5433 431 3384 * * * * * * 6614 * 6308 53
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+
+D 55 6526 6535 1482 3144 * 6341 4808 * 3884 * * 2188 6300 3909 * 3818 6645 6400 * * 55
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+
+A 56 1893 2571 5181 5698 6400 6229 * 6839 5370 6404 6447 6355 * * * 5797 3247 1802 6373 * 56
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+
+E 57 * 6597 3528 3404 4575 * 4955 3258 3251 6514 6954 5717 * 4729 4732 3896 2625 2994 6514 4454 57
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+E 60 5036 * 3401 4242 4428 5528 4991 2685 4065 4402 6574 5567 6586 4102 3716 4136 3687 4363 3928 4849 60
+ 383 2249 5470 1798 489 1988 419 7523 2580 1598
+
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+ 295 2437 * 3073 182 1961 428 7498 2331 1603
+
+G 62 4093 * 2652 3485 * 1929 6492 6220 4172 6402 6467 3615 5333 6023 4890 3373 4412 * 6272 6026 62
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+
+E 63 4709 6282 5088 2674 * 2631 5154 5169 3425 6481 4501 3392 5371 3575 5072 4505 3761 5368 6804 6267 63
+ 212 2872 * 2081 389 265 2573 7536 1949 1407
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+ 62 5067 6344 692 1392 * 0 7588 1178 1096
+
+T 65 5248 * 4392 4833 4763 5612 6134 3601 2965 4623 5415 5383 3232 4480 3621 3591 3258 3307 * * 65
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+
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+ 18 * 6307 * * 0 * 7610 0 1076
+
+G 69 4998 * 3572 4732 * 1554 6521 * 5307 6398 6572 4018 2635 4230 4333 3175 * * * 6443 69
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+
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+ 0 * * * * * * 7551 0 0
+
+V 71 4200 3224 * 6682 5087 * 6739 2389 * 2956 3686 * * * 6385 5479 5869 1782 * 4310 71
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+L 72 5844 * * * 1629 * 6812 3704 * 2062 3498 6101 * * * 4544 5254 2921 * 5060 72
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+I 73 * 5632 * * 5659 * * 1267 * 2117 5663 * * * * * * 1765 * * 73
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+P 83 4048 * * 4033 * * * * 3590 3881 * * 726 * * 4135 3917 * * * 83
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+
+//
+�HHsearch 1.5
+NAME ee520d2fc85e5b54c5cab5b1125d8c3b
+FAM
+FILE ee520d2fc85e5b54c5cab5b1125d8c3b
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:18:01 2013
+LENG 249 match states, 249 columns in multiple alignment
+FILT 126 out of 1136 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCHHHCCCHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECC
+CHHHHHCCCCCEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
+HHCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCC
+>ss_conf PSIPRED confidence values
+9689999998599889998876145328997678872444169998707886750999999999999988602799999999999997099659998430
+2266664887679944750001876789763368874267798773467756675887689799999999999985499999989997657699999999
+8679869998699878885420999488999999999999764185159
+>Consensus
+xxxxxxxxlxxaxxivixxGAGiSxxsGipxfrxxxxxxxxxxxxxxxxxxxxxxxpxxxxxxxxxxxxxxxxxxPnxxHxxLxxLxxxxxxxxviTqNi
+DxLxxxAGxxxvxelHGxxxxxxCxxCxxxxxxxxxxxxxxxpxCxxCggxlrpxvvxfgexxxxxxxxxaxxxxxxxdlxlvlGtslxvxpxxxlxxxx
+xxxxxxxixiNxxxxxxxxxxxxxixxxxxxxlxxlxxxxxxxxxxxxx
+>ee520d2fc85e5b54c5cab5b1125d8c3b
+MDEKLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNV
+DDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIV
+KQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLKLN
+>gi|306827305|ref|ZP_07460592.1| SIR2 family protein [Streptococcus pyogenes ATCC 10782]gi|304430452|gb|EFM33474.1| SIR2 family protein [Streptococcus pyogenes ATCC 10782]
+--EQLAQLIKEADTLVVGIGAGMSAADGFTYIgprfETAfPDFIAKYQFLDMLQASLFdFEDWQEYWAFQSRFVALNYlDQPVGQSYLDLKEILETK-DY
+HIITTNADNAFWVAgYdPHNIFHIQGEYGLWQCSQhCHqQTYKDDTVIRqmiaeqknmkvPGqLIPHCPECEAPFEINKRNEEKgMVEDADFHAQKARYE
+aflsehkeGKVLYLEIGvghtTpQFIKHPFWKRVSE--NPNALFVTLNHKHYRIPLsirRQSLELTEHIAQLISATKTIY---------
+>gi|259485388|tpe|CBF82370.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
+--KTARSWLEQADYLIISAGAGLSAATGL-DYTSTD-LFANYfpaflplGLRRLYDVFGFSgwKSPAQKWGYYFHHLNMVKTWPKSPLYASLLEITSrFG
+PRCFVRTSNADGLFLANGfhPSRISTPQGQYAYLQCFaKCKReaVFPSAPFLtaalpfldsqtqlltDESKIPRCRYCSGELTLCVRggdYFNDSPFqgQ
+ErEYArfleHVSSEIeqGRSAVILELGVGMNTpsvlrWHNEELVEES-NGGSRLIRAGFDAAGcvpWRlaeEGVAVGVAGELNAVVDLLRG---------
+--
+>gi|71279737|ref|YP_269579.1| hypothetical protein CPS_2874 [Colwellia psychrerythraea 34H]gi|71145477|gb|AAZ25950.1| putative membrane protein [Colwellia psychrerythraea 34H]
+-----------AKQCVAITGSGIRKG-TLPDY--PSGQWLDPkVPItsyTLAEFKASKRCRYLYWKASYDYYQQALTINKNNIDEQLDYLLNHY-LSGLF
+TETVDSLFNTE-QHPVYECYGSIKRLYCLDCAKQQAWPPIPLwSQRDLHCQHCSGLLKPQILAADENIDSECYQALQKNMMECGCLLVIGVPTITPVVSM
+IIENANANKIPIIFIGTIPFGYfVEEKDVQLTGDIAHWLAEING-----------
+>gi|290978128|ref|XP_002671788.1| Sir2 NAD-dependent protein deacetylase [Naegleria gruberi]gi|284085360|gb|EFC39044.1| Sir2 NAD-dependent protein deacetylase [Naegleria gruberi]
+--EKAAQLIYNSKYLLITCGAGFSKDSGLAVYKDIasNPIYQEknLTYHDLARPVStFETEQEllDYYGFWVNCAQSYLNTPSHSGYQILKDWKQLlysk
+keiqkefnekqieilsasqwwkenckiASNMFIYSSNVDNHFSRYFeKEEIYNIHGHALNWQCGNhCNEDCVWNFtkqLQniiiNqetlqidneKLKELK
+CEKCQHASMPNVLMFGDLGQyirnteEEdryiAWECSVETFSKesstkfPFIILELGCGLTVPSVRRENECVLldCDESYLIRVNLGQEELDTihnvdli
+pmknDRILNIKNGCQDALHRIHQHLLK-------
+>gi|125973113|ref|YP_001037023.1| hypothetical protein Cthe_0595 [Clostridium thermocellum ATCC 27405]gi|256003907|ref|ZP_05428893.1| hypothetical protein ClothDRAFT_3012 [Clostridium thermocellum DSM 2360]gi|281417305|ref|ZP_06248325.1| hypothetical protein Cther_1977 [Clostridium thermocellum JW20]gi|125713338|gb|ABN51830.1| hypothetical protein Cthe_0595 [Clostridium thermocellum ATCC 27405]gi|255992035|gb|EEU02131.1| hypothetical protein ClothDRAFT_3012 [Clostridium thermocellum DSM 2360]gi|281408707|gb|EFB38965.1| hypothetical protein Cther_1977 [Clostridium thermocellum JW20]gi|316940661|gb|ADU74695.1| hypothetical protein Clo1313_1634 [Clostridium thermocellum DSM 1313]
+-------------------------------------------------------------------------TYSKEVEKLIRFFIEnrl--EYTGFLV
+LNWDTVLEKYisaiapkaiidycnggryltedlrfeekrdgkRKVEILKVHGSCNWLYCDNCRilindtvsrvpnirkvgfkksdfklfdemkkvtdkvf
+f------------EDVRCFICGDIVSAHIAtqsyrkSFRTNsFP-SIWDKAEDMLTNSEKWVFIGYSLPQadYEFKHLLKicehk---lghkkDRRlsid
+----VVlfd--SETTAM-------------------------------
+>gi|37526595|ref|NP_929939.1| hypothetical protein plu2704 [Photorhabdus luminescens subsp. laumondii TTO1]gi|36786027|emb|CAE15078.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
+-----------QGHVVFFCGAGISLAkAKLPNFFQLaQKVIDLLGTTNdSQARQLYDFlnkglkdkegnevalpsyaStlisTDRIfslleqeFETNLIE
+KTVAQVlkpsdTVDTSAHKLLLDLATTseG-RVQLITTNFDRLFNDCSlTeipcflppnlpdlskneliDGLVYLHGR--snsdY---------------
+----------------------------------------------------------------------------------------------------
+-------------
+>gi|333913474|ref|YP_004487206.1| hypothetical protein DelCs14_1828 [Delftia sp. Cs1-4]gi|333743674|gb|AEF88851.1| hypothetical protein DelCs14_1828 [Delftia sp. Cs1-4]
+---------------MWFLGAGASAAAGIPTagdmiweFKqklfvSQRraspemvadlsaPSVRQ-HLQSHIDSTSsLpaEGAPNEYSVIFEkvfpaeaD
+RRAYldakLSGAKPSYGHMALAALMKADHTRIVWTTNFDPLVADAcakvfdgtGALTSVAFGVgPEIARKAMA---------------------------
+------------------------------------------------------------------------------------------------
+>gi|69245855|ref|ZP_00603672.1| conserved hypothetical protein [Enterococcus faecium DO]gi|257882009|ref|ZP_05661662.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]gi|258615570|ref|ZP_05713340.1| hypothetical protein EfaeD_07652 [Enterococcus faecium DO]gi|293563462|ref|ZP_06677910.1| USG protein [Enterococcus faecium E1162]gi|294620826|ref|ZP_06700030.1| USG protein [Enterococcus faecium U0317]gi|314947730|ref|ZP_07851137.1| conserved hypothetical protein [Enterococcus faecium TX0082]gi|68195557|gb|EAN09999.1| conserved hypothetical protein [Enterococcus faecium DO]gi|257817667|gb|EEV44995.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]gi|291599611|gb|EFF30624.1| USG protein [Enterococcus faecium U0317]gi|291604464|gb|EFF33950.1| USG protein [Enterococcus faecium E1162]gi|313645710|gb|EFS10290.1| conserved hypothetical protein [Enterococcus faecium TX0082]
+------------GNAAIFAGAGLSMSQGYVSWPELlNDPATEigLDSkkeTDLVTLAQYYKNenggsRGILNQILMDN--FGEELEISENHRILASL---
+-PIETYWTTNYDHLIEKSIreayknpqvkknytqlattnpnvDTIVYKMHGDIDDVS-------------------------------------------
+-----------------------------------------------------------------------------------
+>gi|84686801|ref|ZP_01014688.1| hypothetical protein 1099457000266_RB2654_22528 [Maritimibacter alkaliphilus HTCC2654]gi|84665232|gb|EAQ11711.1| hypothetical protein RB2654_22528 [Rhodobacterales bacterium HTCC2654]
+-------------------------------mvkFKwclendrSIDdptvtraSYWPWLLKQHWFDQdknlaDLYpsavkhllnvSEDRRQ---FFKALI
+--NPAVDPREGYLGLAEILHQRWVTTILTTNFDECLQKAKNmvgrphqitsiktasdlvmfsssprdPQLIYLHGSVDHYT-------------------
+----------------------------------------------------------------------------------------------------
+-------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * * 567 * * * * * * 1621 * * 1
+ 0 * * * * * * 2162 0 0
+
+D 2 * * 1032 * * * * * * 1908 * * 2032 * * * * * * * 2
+ 0 * * * * * * 2820 0 0
+
+E 3 3555 * 3071 1774 * 4619 * * 3005 * 5279 5287 * 5341 2812 3802 5148 5648 * * 3
+ 98 3928 * 1962 428 * * 6895 1187 0
+
+K 4 4424 * 3096 3319 6028 * 6096 5883 2296 * * 5128 6045 2643 2503 5858 3765 6085 * * 4
+ 44 6045 6085 2018 409 * * 7368 1078 0
+
+L 5 2014 6342 * 5961 3748 6349 * 3734 * 1233 * * * * * * 6017 3307 * 5637 5
+ 0 * * * * * 0 7471 0 1000
+
+L 6 1847 * 4904 5080 * 6286 6242 3303 3186 3522 4463 * * 4432 3143 * 5965 3324 * 6165 6
+ 0 * * * * * 0 7545 0 1000
+
+K 7 4639 6236 2909 1799 * 5008 5318 * 3570 5981 * 4184 * 3313 3623 3651 4605 6333 * * 7
+ 23 * 5992 1585 585 * 0 7577 1000 1000
+
+T 8 3481 6582 * 6133 4127 * 6624 3427 4119 1777 3459 * * 4371 5151 5589 4754 4750 3136 * 8
+ 45 5020 * 2864 213 873 1140 7612 1257 1109
+
+I 9 5155 4928 * * 4875 * 6555 1527 6283 1080 6562 * * * * * * 4292 * * 9
+ 0 * * * * * 0 7556 0 1000
+
+A 10 3123 * 4130 3123 * 6035 5238 * 2177 3942 * 4122 * 3117 2686 * 4885 * * 5421 10
+ 15 6554 * 1338 727 0 * 7574 1079 1000
+
+E 11 4239 * 3614 2252 * 4573 * 6983 3400 6674 * 3178 6313 2927 3393 3876 3810 * * 6410 11
+ 78 5249 5260 1392 692 * * 7569 1150 0
+
+S 12 1226 5352 5376 * * 4586 4417 5203 4727 * * 5146 4960 4648 6982 1999 * * * 6345 12
+ 106 3824 * 2084 388 0 * 7640 1503 1127
+
+K 13 6605 * 2170 3297 * 3115 4954 * 2179 * * 4071 4396 3984 3575 5734 5360 * * * 13
+ 35 5385 * 1367 708 * * 7876 1190 0
+
+Y 14 2952 4464 6727 4964 5280 5984 3622 * 2966 4489 * 2676 6793 3956 2980 4822 4773 6468 * 4353 14
+ 10 7155 * 1000 1000 * * 7892 1000 0
+
+L 15 4023 4800 * * 4554 6476 * 1983 * 1983 6207 * 5223 * * * 3530 2211 * * 15
+ 12 * 6923 * * * * 7898 0 0
+
+V 16 3843 6103 * * 6100 6368 * 2787 * 2008 4988 * * * * 6073 4698 1342 * 5944 16
+ 0 * * 0 * 0 * 7922 1000 1000
+
+A 17 3255 5270 * * 3040 * * 1778 * 3036 6105 * * * * * * 1868 4453 * 17
+ 0 * * * * * * 7940 0 0
+
+L 18 5269 * * 6412 2105 2815 4611 2833 * 1898 6607 * * * * 4891 4806 4301 * 7011 18
+ 8 * 7452 * * * * 7940 0 0
+
+T 19 2397 4117 * * * 4628 * 3517 * 3377 * * * * * 3092 1495 4149 * * 19
+ 0 * * 0 * 0 * 7939 1000 1000
+
+G 20 5315 * * * * 120 * * * * * * * * * 4192 * * * * 20
+ 0 * * * * * * 7940 0 0
+
+A 21 426 6412 * * * 6511 * * 5899 * * 3551 5207 * 6063 3651 6758 * * * 21
+ 0 * * * * * * 7940 0 0
+
+G 22 5899 * * 5042 * 108 * * * * * * * * 6660 * 6036 * * * 22
+ 0 * * * * * * 7940 0 0
+
+V 23 4294 5299 * * 4419 * * 1624 * 1769 3283 * * * * * 4374 3210 * * 23
+ 0 * * * * * * 7940 0 0
+
+A 24 4385 * 6307 * * 6180 * * * 6893 * * * * 5136 265 5203 6141 * 6021 24
+ 0 * * * * * * 7940 0 0
+
+A 25 1746 * * * 6791 * 7042 3952 3837 5322 4500 6248 * 4751 5595 5337 2318 2501 * 6870 25
+ 15 6572 * 1000 1000 * * 7940 1000 0
+
+E 26 1838 6476 3035 2528 * 4109 7452 * 6572 7134 6304 5400 4324 5352 * 2363 5201 * * * 26
+ 35 6530 6213 0 * * * 7940 1000 0
+
+S 27 2005 5610 5266 4041 * 4776 * * * 7191 * * * 5212 6010 1011 5011 5024 * * 27
+ 54 * 4763 * * 0 * 7902 0 1026
+
+G 28 * * 6099 * * 154 * * 5616 * * 4807 * * * * 6111 5959 * * 28
+ 0 * * * * 694 1388 7845 0 1305
+
+I 29 7116 5864 * * 4491 6328 * 1243 * 1606 5167 * * * * * * 3568 * 4165 29
+ 39 * 5243 * * * 0 7896 0 1050
+
+P 30 5002 * 4167 * * * 6472 5942 6733 * 6107 3342 653 6881 5769 4375 5622 4984 * * 30
+ 102 5039 4727 2310 325 340 2253 7864 1355 1367
+
+T 31 4689 6911 1518 5947 4813 * 6560 5257 5888 4347 6244 4536 5593 * * 4696 1889 5215 6224 5427 31
+ 173 3228 7316 2405 302 382 2103 7876 1993 1321
+
+F 32 6727 * * * 891 6481 * 5361 * 4429 4996 * * * * 6716 * 7006 3499 2107 32
+ 163 3635 5239 2391 305 1013 987 7947 1805 1091
+
+R 33 4154 * 6552 3321 6485 6664 6392 * 3210 * 6464 5003 6636 6665 996 4122 4387 6446 6427 * 33
+ 106 3960 7182 2504 280 * 0 7914 1569 1306
+
+G 34 5415 * 3005 3227 * 2025 6415 * 3347 5757 * 5312 * 4442 6383 2080 4548 * * 6864 34
+ 0 * * 2322 322 620 1517 7919 1000 1405
+
+K 35 3184 6653 3813 3907 * 6200 5625 4738 4261 2719 5096 4422 2874 4068 5762 3497 4635 5408 * 5369 35
+ 565 1674 6564 926 1078 0 * 7954 3691 1073
+
+D 36 5695 * 2507 3899 5880 2362 4595 * 4408 * * 2564 6601 3749 3894 3770 5981 5623 * 7114 36
+ 345 2299 6683 2417 299 0 * 7930 3010 1095
+
+G 37 4165 * 2473 3586 * 1350 * * 5132 6830 * * 3236 5223 7109 4459 7088 5518 * 4772 37
+ 48 5248 7346 2617 257 956 1046 7940 1194 1099
+
+L 38 4837 * 5716 5811 2991 * 6067 2488 6014 1969 5432 6935 6653 6218 5364 5250 4918 2839 7128 4235 38
+ 29 7113 6270 0 * * 0 7942 1006 1091
+
+W 39 3740 * * 5891 4100 6507 * 3862 5662 4549 5444 7116 6955 6289 4889 4953 * 3973 1674 2227 39
+ 0 * * 1585 585 1729 518 7916 1000 1224
+
+N 40 3439 * 3343 3139 6964 5887 * 5764 2752 4861 6752 3993 5792 3421 3246 3649 3422 7016 * * 40
+ 160 3975 4604 1980 422 1237 796 7918 1733 1124
+
+R 41 4148 * 3644 3249 6398 4126 * 5485 2346 4875 * 3253 * 3915 2546 6132 5152 5476 5112 * 41
+ 366 2873 3514 2027 406 1543 606 7894 2275 1529
+
+Y 42 5006 * * 5869 3141 * 4543 4486 5912 2878 5754 5756 4592 5798 4556 5134 5132 4217 * 1521 42
+ 344 2348 6000 2935 202 350 2215 7812 3019 2203
+
+R 43 4745 * 2414 4645 7027 2604 4371 5893 4352 6840 * 3557 4218 3821 3971 3404 4860 5096 * 6853 43
+ 97 4192 6609 1003 997 1775 499 7883 1578 1343
+
+P 44 3307 5910 5403 6486 3472 5944 6664 3703 4724 3297 4723 5551 2003 6906 6563 5067 4155 3830 * 5006 44
+ 133 4274 4786 2121 377 1584 586 7910 1425 1414
+
+E 45 4371 * 4157 2505 5269 * 4208 3682 3300 4816 5858 4560 6375 3860 3166 3613 4385 5225 7175 6749 45
+ 85 4573 6047 1179 841 1129 882 7916 1321 1725
+
+E 46 3600 * 2501 2562 * 5033 6861 6960 3983 5158 6080 3957 5749 4737 4128 3326 3200 6776 * 5446 46
+ 129 3869 5875 2179 360 2885 210 7886 1724 1606
+
+L 47 4297 * * * 3699 7005 5414 2512 6750 2061 3285 * 5920 5657 5819 4602 5289 3019 5224 4539 47
+ 22 7321 6764 0 * 2438 294 7868 1000 1717
+
+A 48 2576 4823 6127 5221 2309 5204 6796 4092 4889 2496 5572 6763 * 5324 5977 4266 5024 4622 6429 4561 48
+ 58 5733 5610 2000 415 2090 386 7900 1076 1769
+
+N 49 3779 * 2557 2343 * * 7112 5643 5379 6223 * 3518 * 3734 5679 2686 2750 * * 6722 49
+ 51 6631 5332 2807 222 2980 196 7883 1000 1757
+
+P 50 2951 * 5733 6049 3835 2940 5423 4039 6094 3948 5576 6717 2715 6851 3636 3709 4398 4756 7313 4890 50
+ 58 5119 6512 1916 444 * 0 7840 1225 1894
+
+Q 51 3722 6423 3054 4061 4518 5785 5104 5722 3681 4601 4167 5385 5160 4217 4769 3234 3266 3711 6872 6641 51
+ 55 6292 5357 2000 415 1785 494 7820 1000 1997
+
+A 52 3028 5716 5371 6369 2633 3362 7257 * * 3442 4599 5420 * 4224 4546 3364 3881 4911 4686 3899 52
+ 155 3837 4963 285 2479 1981 422 7851 1595 1981
+
+F 53 * * 5777 7045 1320 6991 5344 6252 6201 2903 4513 * 5719 6550 5476 5433 5467 4512 5036 2602 53
+ 523 1838 5359 1289 760 297 2427 7838 3339 2003
+
+A 54 4534 * 4808 3478 3874 6909 5003 6195 3575 4008 * 4113 4893 3823 3011 3741 4764 4314 5611 3390 54
+ 57 4679 * 2718 238 1757 506 7882 1369 1355
+
+K 55 4326 * 4056 2691 6532 4134 4610 6500 3664 5661 6290 4196 4563 4601 2703 4092 3170 5767 5365 * 55
+ 55 4751 * 3027 189 * 0 7910 1268 1219
+
+D 56 4218 5337 1977 4459 5877 6506 4510 5898 4768 6349 * 2651 * 4292 3872 3544 3519 6441 * 5543 56
+ 145 3541 6678 1353 717 * 0 7910 1803 1219
+
+P 57 4905 * * 4108 6871 6984 * 5989 3814 4068 6824 * 1107 5333 2985 4925 4549 * 5418 5486 57
+ 38 5778 6984 2551 270 1000 1000 7906 1157 1320
+
+E 58 3175 * 3320 1907 * 4686 7041 6785 3278 5290 6973 4777 6910 3752 3798 5341 4115 5115 7346 5494 58
+ 94 5219 4796 5233 39 * 0 7925 1229 1215
+
+K 59 5252 * 4738 2217 6359 6308 6801 4596 3773 2954 5421 6012 4624 3379 3765 3946 6100 3703 * 4693 59
+ 57 6246 5303 0 * 3445 139 7926 1029 1739
+
+V 60 4317 5382 * * 2279 * 6202 4125 3556 3879 6816 6804 * 4332 6485 6249 5359 2781 6713 2153 60
+ 48 5431 6683 2343 317 3483 135 7875 1204 1970
+
+W 61 4787 * * 6905 3832 6615 4356 6435 6833 4070 7120 5030 * 6842 6445 5315 5655 5243 1236 2378 61
+ 0 * * * * 3693 116 7871 0 1958
+
+K 62 2332 * 4350 2581 * 3022 5709 * 3331 6289 5394 4039 * 3426 4783 3980 4978 5522 * * 62
+ 28 6577 6795 2322 322 2141 371 7866 1000 1880
+
+W 63 4472 7002 * 5679 1545 * 7343 4404 5047 4056 4294 * * 5689 3744 6896 6457 3934 3790 2850 63
+ 10 * 7128 * * * 0 7893 0 1771
+
+Y 64 4288 5997 5618 5718 2410 6715 4650 4611 7025 3442 4695 5678 * 5424 * 4488 5488 5160 3340 2055 64
+ 47 6678 5496 2585 263 3151 172 7878 1000 1876
+
+A 65 2896 7034 6527 2734 5784 4330 6033 5698 3341 4250 6603 4237 * * 2667 3265 4855 4402 6070 5521 65
+ 103 4164 6252 2670 247 2038 403 7893 1421 2013
+
+W 66 3854 * 3007 3035 6647 5596 5398 4340 3209 5967 6744 4246 6907 3961 2789 4300 4977 5594 4730 4780 66
+ 41 7033 5637 0 * 3642 120 7886 1000 1932
+
+R 67 5427 6522 5864 3598 4069 4961 4914 3560 4772 2555 4260 4899 * 5666 2061 6237 6414 6505 7020 4037 67
+ 150 3856 5082 1872 460 913 1092 7894 1829 2117
+
+M 68 3839 * * 5589 3649 7219 5826 2429 4752 2852 5270 * 6831 5409 2408 4626 5346 4459 5404 3984 68
+ 233 5084 3064 2121 377 2175 361 7849 1174 1758
+
+E 69 3612 6155 3426 3579 * 5927 4250 5867 3220 4181 6596 3888 4350 3239 3110 4803 4655 7040 6760 4724 69
+ 58 4655 * 1606 575 372 2136 7646 1363 2771
+
+K 70 4761 6473 4352 4164 3832 4468 * 5215 5755 2564 4322 3653 5415 4476 4277 4524 3828 4664 6444 3280 70
+ 361 2398 4985 1215 813 761 1287 7878 2743 1485
+
+V 71 3738 4046 6998 7077 3866 4775 6847 2801 4849 3144 4558 4663 5119 5318 4437 6904 3426 3750 6278 3763 71
+ 41 5589 7077 327 2303 679 1413 7855 1228 1533
+
+F 72 4204 * 4898 3877 3827 5019 5323 4107 4235 3065 * 4582 3923 3739 3408 3682 4742 5930 5471 4150 72
+ 121 3639 * 426 1967 714 1357 7922 1750 1233
+
+N 73 4619 * 2657 2951 7451 3661 4816 5880 3374 4692 6448 3376 6053 4769 3591 4099 4480 5088 * 5383 73
+ 58 4669 * 2162 365 * 0 7891 1322 1151
+
+A 74 1507 5137 7483 5556 5779 4972 6991 4552 3452 3805 6442 5872 5848 5161 6624 4913 3809 3876 4996 4591 74
+ 9 7337 * 0 * 0 * 8900 1000 1151
+
+Q 75 4361 * 6705 2516 6072 6367 5732 6684 1983 4473 * 5030 3326 3555 4237 4331 4780 4894 * 5302 75
+ 0 * * * * * * 8934 0 0
+
+P 76 4548 * 5965 5712 7399 6454 * 4551 5591 5836 * * 520 6432 * 5344 5003 4468 * 6137 76
+ 0 * * * * * * 8934 0 0
+
+N 77 5435 7168 5396 * * 3925 4224 6521 6083 6539 6562 1414 5013 * 5326 2417 2689 * * 7310 77
+ 52 4828 * 1545 606 * * 8944 1270 0
+
+K 78 2961 * 4282 3038 5861 * 6068 5422 3646 3759 * 4766 2591 4429 3406 4586 5150 5407 6014 4762 78
+ 33 6609 6310 1000 1000 * * 8944 1017 0
+
+A 79 1936 * 6525 6431 5273 2386 7117 4128 * 3686 * 5805 5077 6430 * 4138 2984 3236 6863 * 79
+ 16 6525 * 1000 1000 782 1256 8938 1004 1132
+
+H 80 6633 * 6413 6731 4118 * 657 * 6530 6556 3863 5494 * * * * 6434 6730 * 2800 80
+ 0 * * * * * 0 8943 0 1000
+
+Q 81 4970 6776 * 3180 5641 6447 4753 3800 2971 3011 4344 7151 * 3667 2688 6110 7146 5908 5739 3190 81
+ 0 * * * * * 0 8943 0 1000
+
+A 82 1598 * 4149 4867 3592 5352 6795 3460 4250 3467 6159 4776 5756 4607 6426 4426 * 4889 5612 7309 82
+ 9 * 7374 * * * 0 9059 0 1000
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+
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+ 137 3984 5191 1685 537 * * 8360 1558 0
+
+P 216 3630 * 3865 3870 4112 3761 * 4470 5154 4862 * 4807 3095 4140 3403 3842 4042 4207 6626 4498 216
+ 138 3629 6564 2981 195 * 0 8292 1645 1186
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+ 162 4594 3952 0 * 1999 415 8321 1257 1286
+
+T 218 5028 6379 1906 4108 6269 6297 4663 6208 5229 5085 6201 5484 1883 * 4744 3826 4512 4683 * * 218
+ 360 2275 6128 1745 511 163 3227 8258 2579 1758
+
+P 219 5332 5444 3936 2504 6217 4483 5675 * 3061 4681 * 5167 3523 3637 3984 3667 4297 4172 * 5029 219
+ 468 2101 4515 1533 611 * 0 8354 2791 1102
+
+I 220 3894 6303 3033 3547 * 3747 4796 4879 2990 3411 4870 4519 5226 4768 4296 3514 * 5513 * 4428 220
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+
+A 221 2174 7116 5580 5293 3152 4528 5299 6701 3486 5639 * 4824 4742 4491 2182 5381 6425 4778 * 6062 221
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+D 222 3336 6222 1701 5242 5656 3439 4398 4703 * 5294 * 4549 6339 * * 3097 3017 5473 * 6347 222
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+
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+ 56 5288 6348 1293 756 * * 8377 1102 0
+
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+ 14 * 6678 * * * * 8377 0 0
+
+G 227 3400 4968 3283 3592 * 1250 * 6230 5400 5478 4119 4255 * 6635 * 4417 * 5572 6627 6684 227
+ 28 * 5701 0 * 0 * 8365 1000 1000
+
+K 228 4565 * 1736 4335 * 4304 6264 * 2393 5487 * 4026 3558 * 3948 4528 3905 * * 6576 228
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+G 230 2616 * 2373 2927 * 2719 * 6728 4707 6718 6269 3373 6134 4674 5533 3910 4651 6343 * * 230
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+E 231 3183 * 2580 1805 * * 5136 6311 4450 5588 6229 4603 5647 3513 5337 5023 3960 4402 * * 231
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+D 234 3239 6580 4493 2529 * 4823 4518 * 4067 4262 * 4999 2219 4846 3368 3865 6472 5834 * * 234
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+E 235 3836 6635 3463 2740 6274 5038 4843 5077 2518 4316 5265 4500 5490 3877 3407 * 4852 5371 * 4904 235
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+
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+R 238 3152 5660 3113 3409 * 3633 * * 2807 * * 3557 6402 3399 2771 4414 4790 6222 * * 238
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+H 239 3000 * 4748 3141 * * 4122 3810 3996 3031 5504 5477 4717 2854 3308 5618 4455 5446 * * 239
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+
+V 240 * 5431 5610 * 4307 * * 3066 * 1279 3096 5174 * * 5574 4933 5297 3349 * 4256 240
+ 86 4111 * 1585 585 0 * 6772 1002 1000
+
+R 241 * * * * * 1978 * 3265 3263 2498 4233 * 4261 * 3282 3390 4122 * * * 241
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+
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+A 243 2668 * * 1516 * * 2841 * 2631 2382 * * * * * * * * * * 243
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+L 244 2841 * * * * * * 2631 * 2668 2382 * * * * 2584 * * * 2450 244
+ 575 1605 * 3000 193 * * 3192 1005 0
+
+S 245 * * 1024 * * * * * * * * * * * * 976 * * * * 245
+ 0 * * * * * * 1610 0 0
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+L 246 * * * * * * * * * 0 * * * * * * * * * * 246
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+N 249 * * * * * * * * * * * 0 * * * * * * * * 249
+ 0 * * 0 * * * 1000 0 0
+
+//
+�HHsearch 1.5
+NAME f038453661ad6048b85e5011b6e6296a
+FAM
+FILE f038453661ad6048b85e5011b6e6296a
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:31:50 2013
+LENG 243 match states, 243 columns in multiple alignment
+FILT 229 out of 1408 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.4
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCEEEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCEE
+EEEEECCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCHHHHHH
+HHCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9346893778999845212239999999159994089899851687677889887688998234488677689969989877873366179986568199
+9999928979999999999998443268999872699997627774446888876698589998999995789987222988744557652899999986
+3563636543456675698899999997788832421068899
+>Consensus
+xxxxxxxtsxxixSxxxxxyGxxEaRiKxpxxxGxxxAfwlxxxxxxxxxxxxxxEIDIExxGxxxxxxxtnxxxxxxgxxxxxexxxxxxxdxxxxfHt
+YxieWxpxxIxfyVDgxxvxxxxxxxxxxxxxpmxlixnlwxxxxxxxxGxxdxxxxPxxmxVDyVrvyxxxxxxxxxcxxxxxxxxxxxxxxnxxxxxx
+xxxxxxxnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+>f038453661ad6048b85e5011b6e6296a
+MVSAKDFSGAELYTLEEVQYGKFEARMKMAAASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHT
+YGLEWTPNYVRWTVDGQEVRKTEGGQVSNLTGTQGLRFNLWSSESAAWVGQFDESKLPLFQFINWVKVYKYTPGQGEGGSDFTLDWTDNFDTFDGSRWGK
+GDWTFDGNRVDLTDKNIYSRDGMLILALTRKGQESFNGQVPRD
+>gi|14330336|emb|CAC40809.1| Xet3 protein [Festuca pratensis]
+----SNSSGSMIRSKRQFIFGTVSTWIQASSRAtlarhrhNILP---ILG-------GDNHDEIDFEFLGNETGqpyTLHTNVYADGVGN---KEMQFVP
+WFDPTGGYHKYTISWTPCMIVWYVDDLPIRVFRNYRqSNgvAFPtsRPMYAYSSIWSADDWATQGGrvkTDWTHAPFVANYHGIDLDiceCYGGDCIY--
+-GCAGAYGQPYcGGLTDEQRWKMQWV--QERYRIYDYCVDYKDGKV-------------------
+>gi|331270344|ref|YP_004396836.1| putative endo-1,3(4)-beta-glucanase [Clostridium botulinum BKT015925]gi|329126894|gb|AEB76839.1| putative endo-1,3(4)-beta-glucanase [Clostridium botulinum BKT015925]
+MKNGKPYSSTsgNVSTQGiaFWKYGRIDVRAKIPMEMGMWPAIWMMPEANPYG-WPNDGEIDImEALGSEKNIVYGTLHTGNIDDpknhtRTSTGVTYKL
+qKGTLADDYHIYSVIWKEKSFEFLIDNKSIGKINSwpskfkvTDirtgkekvldpafPDPFNKPFYLILNLGV--GGGWGGEPNTTTswgDKTKMFVDYV
+RVYQKDN----------------------------------------------------------------------
+>gi|58266734|ref|XP_570523.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]gi|134110300|ref|XP_776206.1| hypothetical protein CNBD0270 [Cryptococcus neoformans var. neoformans B-3501A]gi|50258876|gb|EAL21559.1| hypothetical protein CNBD0270 [Cryptococcus neoformans var. neoformans B-3501A]gi|57226756|gb|AAW43216.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
+-----------------------------------------------------------------------------------------------GGFGV
+YGFEYFSNpedrdsgHITWVANGEKSWTMYPAAVGAvesmgigqrliSEEPMAMIINFGMS---ESFQSVDFNhlITPMEMLVDYIRVYQRSEG-KVGCD
+PKdrpTAAYienhLNAYSNPNLTTWEDAGYTIPKNS----------------------------------
+>gi|46138213|ref|XP_390797.1| hypothetical protein FG10621.1 [Gibberella zeae PH-1]
+-------VASEFDSIDRFQFLSIRFMGRVRGAPGACMAMFTYVPAKEIKD---VQEADMEILTREDHDrVHyTNHPGySATELF-PKAtRNITLPDgLKW
+NEWVEHRLDWTPTQSIWYANGIEAANISFQ---VPRDPSLLIFNSWGD-GGVWTQNMTTGQ-EAYMELQWLQMvYN------------------------
+-------------------------------------------------
+>gi|302915076|ref|XP_003051349.1| hypothetical protein NECHADRAFT_80733 [Nectria haematococca mpVI 77-13-4]gi|256732287|gb|EEU45636.1| hypothetical protein NECHADRAFT_80733 [Nectria haematococca mpVI 77-13-4]
+-----HYLSGAIHAKSTFtvvaGGGYdVKAEFIAPVDRGTWPAFWLNAA-------SGWpPEIDVaEWKGSG--KISFNTFNTSSE-----VTALDVDYP
+EPTQWHSVRAELRDengvdVRVKFFLDDREVTTQYGRE--YIGKGLRLIINY------QTEGSSgsPGPTTPTTFQIRNVEVISY---------------
+---------------------------------------------------------
+>gi|294054542|ref|YP_003548200.1| glycoside hydrolase family 16 [Coraliomargarita akajimensis DSM 45221]gi|293613875|gb|ADE54030.1| glycoside hydrolase family 16 [Coraliomargarita akajimensis DSM 45221]
+---GELYSGATIISNQKFTHGYIEARTR--LDW-VDGHFWPT----------FWMNEYRaDGSANE---fdimeynhwstYPTQSHHFP------KKEGV
+TTVpsNASVNEWHVWGVLWTENEITFYVDgikqfSSERPQVA------ATDLLPLVFSC----SPNLNKNPARTGQYPRFFVDWVRVWQG----------
+--------------------------------------------------------------
+>gi|298372310|ref|ZP_06982300.1| hypothetical protein HMPREF0156_00351 [Bacteroidetes oral taxon 274 str. F0058]gi|298275214|gb|EFI16765.1| hypothetical protein HMPREF0156_00351 [Bacteroidetes oral taxon 274 str. F0058]
+-----EFTSDVVNGYNlaKEEYCGIRVKMRCTG--NVNHAFWLTSGS-------KLPHINVaLIKGK-------TIEVGvHDArGDYY-YTTVT-GI-NP
+SKYYIYSIYQKNGYLIWRINNIEVFRTRNI---IAELRFSPCFSSFIP------ADKvDA--TEGQLDIAWVEVYK------------------------
+-------------------------------------------------
+>gi|328886601|emb|CCA59840.1| hypothetical protein SVEN_6554 [Streptomyces venezuelae ATCC 10712]
+---------AEVHTGVrKFKNGTYAARVRLADtptsgpdGDHLVQSFFTINDLTaPMA--DDYAEYDFEYLPNGgwgePANvLYTTSWETFRPDPWEAVN
+QHTEARTSQAGWHDLVLTIDDTALVYYLDGKEFARHDAR--YLPERPMSIHFNQWL---IDLTGQISTAPRAYEEQVDYVLHV-----------------
+---------------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * * * 1074 930 * * * * * * * * * 1
+ 0 * * * * * * 1642 0 0
+
+V 2 * * * * * * * * * * * * * * * * 730 1333 * * 2
+ 0 * * * * * * 2435 0 0
+
+S 3 * * * * * * * 1560 * 3520 * 1785 * 2286 * 3671 * * * * 3
+ 0 * * * * * * 4034 0 0
+
+A 4 2563 * 4939 5055 * 1557 * * * * * 3730 * * 4786 2542 3177 * * 4865 4
+ 0 * * * * * * 5981 0 0
+
+K 5 5339 * 2611 3923 6106 4064 * * 2291 5813 * 4711 5193 * 2776 3544 3992 * * 3487 5
+ 0 * * * * * * 7336 0 0
+
+D 6 4319 * 3945 4215 * 4988 4663 * 3689 5333 * 2390 2420 3344 4070 5733 4179 * 5197 5584 6
+ 0 * * * * * * 7962 0 0
+
+F 7 6111 * 6050 7131 2235 5183 6769 4227 6702 4891 * 6266 * * 4871 4671 7044 3940 3113 1545 7
+ 0 * * * * * * 8125 0 0
+
+S 8 4260 * 4947 5521 * 5931 * 5028 4426 3924 6784 5389 6788 6172 4037 2495 1490 5270 * 4108 8
+ 9 * 7360 * * * * 8221 0 0
+
+G 9 3618 5718 * * * 1456 * * * * * 5552 * * * 1220 3760 6560 * * 9
+ 11 7088 * 0 * 0 * 8292 1049 1000
+
+A 10 1600 4836 5857 * * 1408 * 7624 * * 7312 * 6557 * * 2596 4737 5961 * * 10
+ 0 * * * * * * 8374 0 0
+
+E 11 3120 5323 * 2683 5415 2190 7031 5671 4451 5948 5072 5083 * * 2721 4532 5330 4780 4777 5610 11
+ 9 * 7318 * * * * 8399 0 0
+
+L 12 5440 * * * 2839 * * 1589 * 1938 4590 * * * 7240 * * 2478 * 5950 12
+ 10 * 7240 * * * 0 8389 0 1000
+
+Y 13 3719 * 4091 3428 5837 5046 4205 4354 4211 6321 5515 4341 * 3249 3423 3658 2919 4608 * 4924 13
+ 0 * * * * * 0 8391 0 1043
+
+T 14 6571 * * * * 4963 6954 * * 7595 * * * * * 786 1530 * 6977 6678 14
+ 21 6110 * 2407 302 * 0 8391 1043 1043
+
+L 15 3759 * 4968 5120 6261 5132 5951 5050 1779 4424 7238 3339 7191 3455 3127 5346 4142 6438 7068 5551 15
+ 225 2795 * 1275 769 * 0 8391 2019 1043
+
+E 16 3992 * 3468 3250 3649 3230 4555 * 3413 5040 7595 3184 * 3695 3808 4577 4722 5550 * 5406 16
+ 340 2252 * 1075 929 0 * 8391 2437 1043
+
+E 17 3464 6973 3300 3928 5600 4901 6533 6072 2784 6029 6732 4756 6341 4140 3798 2731 3407 7038 * 4209 17
+ 98 3928 * 978 1022 * * 8443 1371 0
+
+V 18 5280 * * 6194 1574 * * 3374 6318 4237 7125 7063 4772 4079 5829 6021 5442 3472 4490 2629 18
+ 62 4756 7622 1658 550 * * 8533 1207 0
+
+Q 19 5562 * 6428 5555 5553 3755 4484 5627 2778 2823 5683 5088 5945 2918 3507 3835 3249 5734 7378 6262 19
+ 40 5651 7035 1590 582 * 0 8668 1086 1028
+
+Y 20 5509 * * 5511 3165 5528 3862 6886 5562 6462 * 5275 4785 6416 5688 4138 5864 6175 6418 942 20
+ 13 6856 * 0 * * 0 8657 1010 1080
+
+G 21 5137 6938 * * * 179 * * * 6818 7117 6888 5685 * * 5781 6745 8047 7669 * 21
+ 132 3600 7734 715 1355 476 1832 8633 1571 1137
+
+K 22 7492 7310 * 7607 3915 6473 5829 7214 3080 4630 4972 6483 * 4579 2140 3633 5458 5355 7754 1845 22
+ 89 4064 * 239 2712 1338 726 8677 1378 1038
+
+F 23 5854 * * * 1750 * * 2518 * 4084 4351 7494 * 7262 * * 5795 2432 3908 3049 23
+ 5 * 8241 * * * 0 8675 0 1004
+
+E 24 5650 * 5195 741 * 4608 8260 * 5342 * * 5864 * 5317 3946 3326 4466 5284 * 7015 24
+ 11 7626 8573 1585 585 * 0 8679 1000 1032
+
+A 25 1331 5214 * 6882 4441 7039 * 3036 * 6604 3149 * * * * 4209 3831 2873 7040 * 25
+ 0 * * 1000 1000 2474 286 8724 1000 1108
+
+R 26 4924 7640 7837 4107 * 7363 8193 7211 3241 5215 6091 7254 * 5660 848 3594 4725 6495 6315 6669 26
+ 0 * * * * 0 * 8719 0 1080
+
+M 27 2098 6100 * * 3775 * * 1757 * 3361 2795 * * * * 7397 6581 2998 * * 27
+ 10 7218 * 1000 1000 * * 8674 1008 0
+
+K 28 5832 * 7370 6147 * * * 6518 856 6496 7462 7024 * 3977 1930 5572 6044 * 7572 7145 28
+ 15 * 6581 * * * * 8674 0 0
+
+M 29 2889 6204 * * 3865 4927 6278 3747 * 1810 2903 * 4302 7354 7145 5923 4575 3225 6113 * 29
+ 17 6414 * 2191 357 * 0 8638 1031 1031
+
+A 30 2804 * 5234 7017 * 5544 6175 5400 7002 5205 5192 4933 1312 5493 5534 3218 4068 4409 * 6966 30
+ 61 5714 5480 1596 580 0 * 8637 1125 1031
+
+A 31 3360 6345 3418 3887 7230 3767 6291 8624 3473 4604 7401 3231 3039 4778 3871 4021 4393 4781 7585 6280 31
+ 686 1478 5686 1317 740 0 * 8694 3532 1103
+
+A 32 3420 7856 3977 4319 * 2279 4518 5347 5549 5020 7260 5748 5724 5474 4412 2577 3316 4030 * 5690 32
+ 68 5478 5415 549 1659 1749 510 8630 1176 1107
+
+S 33 2148 8577 3429 4244 5647 5173 7828 6300 4298 6692 6765 5295 2685 4793 3843 3521 3682 5545 6534 7035 33
+ 88 7842 4196 2807 222 0 * 8574 1043 1216
+
+G 34 5341 * 6924 6178 * 348 6339 * * 4881 * 5283 7137 * 6267 4474 6985 * 5451 * 34
+ 9 7359 * 1000 1000 0 * 8619 1001 1329
+
+T 35 3720 6113 7374 7486 4214 6139 7215 3119 * 2920 3840 5490 * * 7266 3774 2548 2332 6231 5553 35
+ 6 * 7895 * * * * 8673 0 0
+
+V 36 5613 4327 5573 6876 3756 5791 7175 4167 * 4826 6112 4538 * 5658 7558 4488 5133 1917 2015 4557 36
+ 13 8592 7290 1585 585 * 0 8676 1028 1000
+
+S 37 4261 4945 7142 * 6126 5101 4989 * 6824 6829 5234 4853 1529 7109 * 2627 2439 4449 * 6833 37
+ 6 * 7923 * * 782 1258 8673 0 1045
+
+S 38 812 * * 6988 7371 3576 6581 * * 6336 6877 5458 6981 7224 * 2749 3382 6158 7535 * 38
+ 0 * * * * 1739 514 8675 0 1082
+
+M 39 6322 * * * 843 * 7225 2787 * 3296 4430 * 7227 8129 * * 6191 4574 5416 4616 39
+ 15 6574 * 2309 325 * 0 8672 1086 1043
+
+F 40 * * * 5801 2589 6123 6908 6358 * 4783 5680 * * * 7017 * * 5371 840 2894 40
+ 15 * 6568 * * 0 * 8672 0 1043
+
+L 41 4189 * * * 5050 5879 * 5086 * 1243 2546 * 5865 * * 5196 2549 4963 5196 * 41
+ 15 7621 7527 0 * * 0 8672 1000 1052
+
+Y 42 5781 7783 7013 6203 4333 7372 5924 3591 5039 2964 3667 5060 * 4219 4812 3213 3978 4554 4318 2473 42
+ 76 6137 4740 1000 1000 1536 610 8671 1047 1095
+
+Q 43 4148 6903 5019 5818 5702 2719 6270 * 5578 * * 2833 2767 6499 4678 2086 4227 * 6997 4395 43
+ 73 5528 5162 1226 805 2927 203 8664 1116 1311
+
+N 44 3374 * 2570 4003 * 3342 5017 6782 4409 6519 6925 2882 4872 3621 5329 3841 3636 7179 * 4841 44
+ 309 5022 2627 1717 523 1305 748 8613 1331 1597
+
+G 45 4711 * 2187 3237 5464 2584 7002 6909 4751 6733 6941 3361 3156 5478 5083 5373 4287 * * 4672 45
+ 601 3716 1918 606 1543 2101 383 8437 1758 2477
+
+S 46 4391 * 3265 3952 6662 3361 6201 7312 4794 7256 6021 4031 3283 5186 * 2387 3035 4215 5969 5370 46
+ 679 3933 1690 512 1744 3411 142 8264 1320 3612
+
+E 47 4656 5740 2710 3403 6660 6052 4716 5235 4034 5199 * 3146 3595 3791 * 4096 4473 5257 4993 3515 47
+ 400 4630 2308 1229 802 2167 363 7855 1102 4548
+
+I 48 4444 6428 4900 5037 3668 5340 * 3287 5158 3492 3651 6560 3647 5774 * 4339 5396 3094 * 2497 48
+ 321 5339 2517 967 1034 2512 278 8047 1044 4347
+
+A 49 3006 * 3812 3238 5073 1867 6217 * 3840 5407 * 6386 4254 4117 4727 3843 4296 * 7089 * 49
+ 203 5524 3188 1585 585 3634 121 8221 1113 4344
+
+D 50 4593 * 2287 3981 6554 3996 5730 * 4219 6097 * 2856 4845 3211 5408 3058 4188 6018 6305 5480 50
+ 561 3975 1950 1015 985 2614 257 8153 1179 4476
+
+G 51 5351 * 4838 5273 5878 1843 6100 * 5256 * * 3843 3993 4828 6155 5232 5071 * 1671 5268 51
+ 155 3292 * 1439 664 584 1587 7917 1296 4737
+
+R 52 3801 6693 3231 4297 * 2933 7850 4671 3681 5302 6934 4246 2293 5913 7569 4368 3638 4237 * 6084 52
+ 73 5007 5765 2061 395 770 1274 8529 1131 2488
+
+P 53 3806 6019 3973 4508 3920 2943 5633 5693 3162 5652 * 3935 3687 4963 4126 4012 3470 5225 6536 5949 53
+ 41 5663 6936 684 1406 1037 964 8602 1139 1724
+
+W 54 4990 4673 5368 5604 5637 3951 2413 6644 5800 4669 * 3708 6884 6207 4614 3424 7332 4456 2156 4793 54
+ 277 2539 8662 1350 719 592 1571 8652 2115 1405
+
+V 55 4707 5737 2256 4796 5667 2164 5851 5151 7133 5995 6540 4310 3456 3846 4632 5762 4268 4649 * 6148 55
+ 20 6186 * 1809 485 0 * 8680 1045 1182
+
+E 56 7109 7028 * 183 * 7213 5266 * * 7080 * 6651 7040 5357 6739 6279 * * * * 56
+ 0 * * * * * * 8697 0 0
+
+V 57 6893 * * 6652 4901 * * 783 * 2946 4109 7357 * 7141 * * 7319 3127 5806 5175 57
+ 7 * 7751 * * * * 8695 0 0
+
+D 58 5325 5216 245 * * 7832 * 7027 7331 7108 * 4699 * 6916 6266 6872 * * * 6601 58
+ 0 * * * * * 0 8703 0 1017
+
+I 59 6483 * * * 2379 * 6531 1162 * 3813 4223 7192 * * 6601 7154 7125 2669 6501 6105 59
+ 1195 829 * 0 * 0 * 8703 4681 1017
+
+E 60 * 7314 6350 282 * 7349 * * 5899 4774 5668 * * 5471 5914 6532 5893 * * 6268 60
+ 45 5459 6916 489 1799 * * 8695 1131 0
+
+V 61 4812 7370 * 5692 2073 4662 4301 3399 6520 3606 6029 3758 * 6261 * 4287 4365 3726 4123 3501 61
+ 107 4466 5265 542 1676 * 0 8678 1275 1010
+
+L 62 4874 6040 5261 * 4457 5201 6170 4118 4118 1732 4649 5512 5657 4858 3941 4629 5243 3663 7399 3492 62
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+G 238 * * * * * 1150 * 3417 * * * * * * * * 3228 1519 * * 238
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+D 243 * * 0 * * * * * * * * * * * * * * * * * 243
+ 0 * * 0 * * * 1797 0 0
+
+//
+�HHsearch 1.5
+NAME f10edaeff439be4afbba7757c8cac254
+FAM
+FILE f10edaeff439be4afbba7757c8cac254
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:38:56 2013
+LENG 64 match states, 64 columns in multiple alignment
+FILT 114 out of 272 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCC
+>ss_conf PSIPRED confidence values
+9877687796999999999988899838997399841677789979999899995986089689
+>Consensus
+xxsWPELVGxxxxxAxxxIxxdxpxxxvxvlxxgxxvtxDfxxxRVxvxvdxxgxVxxxxPxvG
+>f10edaeff439be4afbba7757c8cac254
+LKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG
+>gi|41053029|dbj|BAD07960.1| hypothetical protein [Oryza sativa Japonica Group]gi|125537886|gb|EAY84281.1| hypothetical protein OsI_05660 [Oryza sativa Indica Group]gi|125580633|gb|EAZ21564.1| hypothetical protein OsJ_05192 [Oryza sativa Japonica Group]
+-VRWAEVLGELAPLAVTQISNDRPDVAVEVLlrDAAAVVSPEFNPKRVRVFVDNNFIVVK-VPVIS
+>gi|186528913|ref|NP_199170.2| Serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana]gi|332007600|gb|AED94983.1| Serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana]
+-SSWPELVGRRGEEVKEIIDRENTKVTAKIISENAVVLAVVICDRVYVRVNDQGIVTR-TPI--
+>gi|87198879|ref|YP_496136.1| hypothetical protein Saro_0857 [Novosphingobium aromaticivorans DSM 12444]gi|87134560|gb|ABD25302.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444]
+------HLGQKATGELGVELLRQTAARVlRWVPPRTAVTMDYRADRVTVGYDDDYTIVR------
+>gi|238498650|ref|XP_002380560.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]gi|317155796|ref|XP_001825378.2| hypothetical protein AOR_1_770074 [Aspergillus oryzae RIB40]gi|220693834|gb|EED50179.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
+-----KLAGKTITEGTsdvtSFAKKDLPQS-HRIVKPGDMMTMDYKPERLNVHLDEQGTVHD------
+>gi|195657573|gb|ACG48254.1| hypothetical protein [Zea mays]
+-QTWPDLVGYAVVDAVNIIRQDNPNItEVRVLPPDgVPSPLQDGAIRVCIYNDivnGQAVVVNPAPYIG
+>gi|168066728|ref|XP_001785285.1| predicted protein [Physcomitrella patens subsp. patens]gi|162663119|gb|EDQ49902.1| predicted protein [Physcomitrella patens subsp. patens]
+--GWPDLAGLDCVAGMNSIKQDYLGVTIVYGPKGFMHIQDFQKDRVWVDINPDGTIAA-IPAIG
+>gi|254418094|ref|ZP_05031818.1| hypothetical protein BBAL3_404 [Brevundimonas sp. BAL3]gi|196184271|gb|EDX79247.1| hypothetical protein BBAL3_404 [Brevundimonas sp. BAL3]
+--------------------------NRRVTCTTCPVSQDYSAYRLNIFYNADtGIIEQ------
+>gi|325926183|ref|ZP_08187541.1| hypothetical protein XPE_1507 [Xanthomonas perforans 91-118]gi|325543365|gb|EGD14790.1| hypothetical protein XPE_1507 [Xanthomonas perforans 91-118]
+-----SLVGQPLTDAVGEQARSDAGAkSVRVLKPGQMTTMEFNGERLNLEVDAKNVITS------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+L 1 * * * * * * * * * 913 * * * * * * * 1093 * * 1
+ 0 * * * * * * 1459 0 0
+
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+ 0 * * * * * * 4669 0 0
+
+S 3 3511 6297 * 3055 6024 3940 6034 * 5130 * * 6066 5304 * 5877 1038 3175 * * * 3
+ 0 * * * * * * 4938 0 0
+
+F 4 * * * * 4786 * * * * * * * * * * * * * 53 * 4
+ 0 * * * * * * 4935 0 0
+
+P 5 4150 * * * * * * * 5759 * * * 256 4678 * 5008 5833 * * * 5
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+
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+
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+
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+
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+ 12 6957 * 0 * 0 * 6344 1000 1346
+
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+
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+
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+
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+
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+
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+ 0 * * * * 0 * 6359 0 1082
+
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+
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+
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+
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+
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+V 28 2601 * 7096 * 5093 6226 4708 2181 * 6159 5191 * 6550 * 6390 5871 5181 1376 * 4941 28
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+ 11 7087 * 0 * 0 * 6361 1118 1065
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+P 32 4690 5106 5649 5609 4924 4123 5733 6020 3017 4349 * * 1602 5337 3066 4413 4522 6390 6717 6772 32
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+E 33 4368 * 4982 2708 * 5649 7142 * 4070 4372 * 5492 1507 3970 6743 5328 4957 3495 5653 5700 33
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+
+G 34 * * 2387 5965 * 925 5347 * * 6598 * 3066 * 6407 5243 5008 4557 * * * 34
+ 40 5836 6715 0 * * * 6406 1071 0
+
+S 35 4043 4227 2866 4891 6241 7066 5748 * * * 4108 * * 2783 5840 2007 2644 4437 * * 35
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+
+P 36 2226 * * * 5391 5231 * 3588 5751 4224 3137 5618 2081 * 5154 5274 4576 3408 * 5634 36
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+
+V 37 3087 * 6587 5323 5880 * 6244 4404 5127 4787 3459 * 4963 6459 4987 4582 5227 1199 5363 6571 37
+ 13 6789 * 629 1502 0 * 6379 1104 1028
+
+T 38 6504 * * * * * 7381 4511 * 5837 * 6020 2424 * 6285 4052 695 5844 * 6407 38
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+
+L 39 3611 6532 4955 4883 * 5764 7541 * 3428 3358 1638 * 3092 4382 4218 6284 3959 * * 6706 39
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+
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+
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+
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+ 33 5447 * 3217 164 * * 6406 1072 0
+
+Y 43 3259 2348 6107 3451 6766 6155 * 3786 6252 4995 5931 4605 1856 6444 7372 4743 4410 6971 * 6730 43
+ 0 * * * * * * 6406 0 0
+
+N 44 5312 7222 1728 3400 6547 4596 5686 5836 4519 5087 7096 2019 5125 5243 4935 4959 5444 * * 6317 44
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+
+R 45 * * * * * * * * * * * * * * 0 * * * * * 45
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+
+V 46 * * * * * * * 4238 * 2004 6014 * * * * * * 552 * * 46
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+
+R 47 5649 5121 6578 6717 3978 * * 3732 * 5009 * 2021 * * 1710 6067 3692 4483 4343 5427 47
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+ 14 * 6693 * * 0 * 6352 0 1028
+
+F 49 4932 * 5502 4499 1846 6791 5007 3451 5327 5110 5763 5492 * 5724 4175 4908 5787 3896 3749 2949 49
+ 0 * * 0 * * 0 6415 1065 1065
+
+Y 50 6926 * 6221 * 4892 6107 5059 3168 6829 3239 6880 5211 * * * * 4094 980 * 3774 50
+ 28 5699 * 1763 504 * 0 6415 1176 1065
+
+N 51 6182 * 754 4704 * 4083 * * 6776 * * 2172 5818 6833 * 6870 5065 * * * 51
+ 75 4561 6949 1613 571 0 * 6415 1192 1065
+
+P 52 3082 5152 2464 2494 6516 3386 * 6219 4111 6805 * 4912 3754 4742 6474 3562 4193 * 6279 * 52
+ 101 4942 4844 1071 932 * 0 6403 1155 1000
+
+G 53 4183 6097 2347 3847 * 4085 7233 * 4155 3963 * 2409 * 4272 5199 3398 3888 4862 * 6112 53
+ 110 4011 6447 1388 694 * 0 6396 1264 1371
+
+T 54 4302 * 3722 5203 * 973 6358 5604 * 4440 5358 3249 * 5736 5702 4662 4585 * * 6716 54
+ 15 6627 * 487 1805 1639 559 6375 1089 1570
+
+N 55 6462 * 6178 5953 * * * 2141 3203 4744 6046 3342 4511 5681 3157 6627 2980 2644 * * 55
+ 40 5186 * 0 * 0 * 6394 1146 1371
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+V 56 * * * * * * * 1746 * * * * * 5653 * * * 552 * * 56
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+V 57 2268 * * 3995 * * 7076 4361 4750 4887 5360 5294 * 5118 4729 3438 2700 2059 * * 57
+ 0 * * * * * * 6384 0 0
+
+N 58 3715 * 3718 3701 6379 5269 5806 6271 3581 6619 * 3794 * 3026 1968 3932 4843 5475 * 4834 58
+ 4009 * 93 * * * * 6381 0 0
+
+H 59 * * * * * * 1591 * * * * * 1523 * 1643 * * * * * 59
+ 0 * * * * 0 * 2019 0 4199
+
+V 60 3407 6457 * 4862 * * * 2821 * 5843 * 6223 3777 * * * 1814 1598 * * 60
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+P 61 * * * * * * * * * * * * 20 * * 6152 * * * * 61
+ 0 * * * * * * 4818 0 0
+
+H 62 4606 * * * * * 3109 4647 3413 * 3690 * * 5013 2470 3231 3586 2295 * 5220 62
+ 32 * 5490 * * * * 4818 0 0
+
+V 63 5125 * * * * * * 1260 * * 4959 * * * 4504 * * 1067 * * 63
+ 0 * * 0 * 0 * 4829 1065 1065
+
+G 64 5666 * * * 5604 111 * * * * 6066 * * * * * 5733 * * * 64
+ 0 * * 0 * * * 4755 0 0
+
+//
+�HHsearch 1.5
+NAME f22915668ca1cb3ce6b2cdc5b2a8d88f
+FAM
+FILE f22915668ca1cb3ce6b2cdc5b2a8d88f
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:26:53 2013
+LENG 111 match states, 111 columns in multiple alignment
+FILT 114 out of 267 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.2
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCHHHHHHHEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCC
+CEEECCCCCCC
+>ss_conf PSIPRED confidence values
+9568889850388980247999998578658988647889758989999985999887731698288689876258798986212123343899852999
+75887557796
+>Consensus
+xxxxxFxxqHvxxxxxxyCnxxMxxrxxxxxxxCKxxNTFIHxxxxxVxavCxxxxcxNxxSxxxxxxTxCxlxxxxxpxCxYxxxxxxxxixVaCxxxx
+PVHxdxxxxxx
+>f22915668ca1cb3ce6b2cdc5b2a8d88f
+ENWATFQQKHIINTPIINCNTIMDNNIYIVGGQCKRVNTFIISSATTVKAICTGVINMNVLSTTRFQLNTCTRTSITPRPCPYSSRTETNYICVKCENQY
+PVHFAGIGRCP
+>gi|326918746|ref|XP_003205649.1| PREDICTED: ribonuclease CL2-like [Meleagris gallopavo]
+-RYEKFLRQHVdyprtlGLMGHRYCGVMLARRQVTApGRPCKPSNTFVHAPAEDLVATCT-RPADSmgfHSTSTTMDITACRLRGgDTRPPCNYRARQLH
+HHVRVSCLDGLPVHLAGT----
+>gi|312597298|pdb|3LJE|A Chain A, The X-Ray Structure Of Zebrafish Rnase5
+PRYQKFLRQHVDaDMSVQKCDRAMSIKKITagTGNDCKEVNTFIQATKDRITTVCGDAgTPVnNlFKSNQPFPVVTCKLKSgNRRPNCQYRGTSSTRYIV
+LGCDKGWPVHYDE-----
+>gi|126277985|ref|XP_001379355.1| PREDICTED: ribonuclease pancreatic-like [Monodelphis domestica]
+-RIQRFWRFHVDnpkslipGGNTKYCTVMIRRRQISERGKCKRENTFIHAMAGAILDVCKAQsvkACKVgrkncHTSDHSFKQTLCVLQGfGYYPNCAYV
+SFPKFKKISLACTGLprVPVYVDP-----
+>gi|148710333|gb|EDL42279.1| mCG1042736 [Mus musculus]
+-ASQWFATQHITYKANLQCNVEMQAINMHR-PRCKGLNTFLHTSFINVVGVCGNPsglpApsqkfytepihnstyprcddamlvvnryrprckdvdtfrh
+tsfanvcvcghpsgfCKehksaNcHNSSSQVPIIVCNLTTpGrTYTQCRYQMKGSVKYYRVACENrtpwdspiypVVPVHLHGT----
+>gi|291403447|ref|XP_002717916.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
+--------------LYRECNTLMAEKVKESNRSCITQYIFIHEEPKTVKAVCSSPavACEfmkgKcHKSPRPFDLTFCKLSKpGQlTPHCNYHTFVLEKH
+IFITCNDQ------------
+>gi|297459463|ref|XP_001249610.2| PREDICTED: ribonuclease, RNase A family, 4-like isoform 1 [Bos taurus]gi|297459467|ref|XP_002700563.1| PREDICTED: ribonuclease, RNase A family, 4-like [Bos taurus]gi|297479281|ref|XP_002690777.1| PREDICTED: ribonuclease, RNase A family, 4-like [Bos taurus]gi|296483458|gb|DAA25573.1| ribonuclease, RNase A family, 4-like [Bos taurus]
+--------------HKYYCDLMMKARGLATDQSCKKNKTFVHSVSPGTRGLCEGPavTCRkmsevyNcHL--IIFKVTQCNLYPeAVPPHCYYEGVTFQM
+DVRIVCVGKRPIHLDE-----
+>gi|38605204|sp|Q7YRH2.1|RNAS9_MACNE RecName: Full=Ribonuclease-like protein 9; Flags: Precursorgi|33243445|gb|AAQ01504.1| LOC122650 [Macaca nemestrina]
+-------------YHRDYCNEEIMRKNVYHKQRCVTEHYFLLMQYDELEKICYNRfvPCKNgvrkcNRSKGLVEGVYCNLTEaFKIPRCKYKSFYRRGYV
+LITCAWqneihkLIPHTIND-----
+>gi|300872939|gb|ADK39282.1| RNase-Cwar1 [Celestus warreni]
+-DFEYFQKHHVDfpkpgtWNDDVYCRMILYKRCI--GF-GLEWTYIIHATEEQLKAICTVDgKRLTgaYRNLTPLPLASCydT-----NNDYAFHGESLT
+GIFEVQCKDGLPVTFLK-----
+>gi|149568755|ref|XP_001515593.1| PREDICTED: similar to ribonuclease 13 [Ornithorhynchus anatinus]
+--ARTFRLMHIDfprsefaPGFRGYCNGLMAYVRAQReSWQCPEKHFVLHAPAATVRAICAHTdsFCEDfgefcTRSHKPLPVTTCARTPgLPPSVCRYN
+ATVHvqSHRVWLLCSS-------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+E 1 2910 * 5201 3357 * 4771 4946 5278 * * * * 4320 1575 4064 3464 4058 * * 4290 1
+ 0 * * * * * * 4534 0 0
+
+N 2 3692 * 2787 6109 * 5579 * * 5800 6117 5481 3269 4212 5121 1866 2978 3809 * 5130 * 2
+ 17 * 6411 * * * * 5418 0 0
+
+W 3 2479 * * 6590 3031 5419 * 4629 * * * * * * * 4120 5256 6549 2580 1464 3
+ 0 * * * * * 0 5546 0 1000
+
+A 4 4168 * 5707 2463 * * 6056 4567 2958 4868 6812 4112 * 1567 4250 4204 6296 * * * 4
+ 34 * 5438 * * * 0 6040 0 1000
+
+T 5 6083 * 3574 * * 6827 3937 * 2082 * 6651 4224 5969 6618 4131 4166 2988 6589 2200 4858 5
+ 0 * * 0 * 481 1819 5804 1098 1162
+
+F 6 * * * * 20 * * * * * * * * * * * * 6212 * * 6
+ 0 * * * * * 0 6044 0 1000
+
+Q 7 4162 * 7287 2748 * 7274 * 5641 3258 1853 6078 * * 2288 3706 6059 * 6063 5821 4748 7
+ 34 * 5441 * * * 0 6044 0 1000
+
+Q 8 5324 * 6928 4051 * * * 2300 3037 4705 5849 4446 * 4770 1803 * 2674 * * * 8
+ 0 * * 1273 770 0 * 5807 1162 1162
+
+K 9 * * * 5162 5858 * 4278 6106 2293 3557 5760 * * 941 4366 * 6381 * * * 9
+ 46 5472 6865 0 * * * 6073 1098 0
+
+H 10 * * 6970 * * * 102 * * * * 5927 6729 * 5345 * * * * 6692 10
+ 17 6410 * 0 * 481 1819 5852 1015 1162
+
+I 11 * * * * * * * 1660 * 3400 3410 * * * 5644 7102 6052 1426 * 3637 11
+ 716 2343 2364 2082 389 0 * 5848 2151 1000
+
+I 12 5614 * 1184 5381 5493 3786 5603 5830 5150 * * 5134 6149 5777 5415 4299 3077 5415 * 3691 12
+ 1158 858 * 2182 359 516 1733 5887 3397 2298
+
+N 13 5719 * 3815 3803 6393 2596 * * 4261 5991 * 2155 3856 3707 4810 3168 5975 6690 4550 7013 13
+ 27 6690 6809 1915 444 1556 600 6009 1074 1596
+
+T 14 4338 * 5608 7030 6555 2676 7064 5972 5349 5848 2998 3016 3946 5527 4529 2760 3588 4087 6728 6349 14
+ 28 * 5707 1335 728 757 1292 6021 1302 1485
+
+P 15 3485 * 2360 * 4204 4123 4501 6572 5004 5642 * 3240 4644 6298 4044 2909 3004 5538 * * 15
+ 0 * * * * 759 1289 6580 0 1290
+
+I 16 5136 7287 2822 4500 * 5669 4116 4999 3830 6874 * 2732 2924 6182 4395 3616 4427 4719 * 3600 16
+ 25 5857 * 1000 1000 1178 841 6458 1076 1080
+
+I 17 5748 * 3669 4376 5503 4064 5737 3284 4533 4099 * 5081 3446 3316 2773 5321 3787 3844 * 6099 17
+ 0 * * * * * 0 6463 0 1015
+
+N 18 6152 * 4177 5697 6349 6776 * 7408 3866 6534 * 3513 6218 3362 3608 6640 6973 * * 982 18
+ 0 * * * * 0 * 6463 0 1015
+
+C 19 * 0 * * * * * * * * * * * * * * * * * * 19
+ 0 * * * * * * 6481 0 0
+
+N 20 7063 * 2567 5316 7129 6473 * * 4404 * * 827 * 6548 5006 5176 3601 * * 5843 20
+ 0 * * * * * * 6481 0 0
+
+T 21 3943 * 3778 4076 * 3973 4786 5090 4146 3763 5006 4310 7110 3464 4202 3664 3008 3232 * * 21
+ 0 * * * * * * 6481 0 0
+
+I 22 2451 6860 * 2600 * * * 3555 5322 3417 1734 * * 6845 * 6856 4037 4035 * * 22
+ 0 * * * * * * 6481 0 0
+
+M 23 * * * * * * * 3195 * 3365 397 * * * 6550 * * 5402 * * 23
+ 13 6841 * 1000 1000 * * 6481 1000 0
+
+D 24 3462 7494 5630 5005 * 4898 5903 5693 2410 4779 5036 5768 6653 3699 1837 3663 * 4942 * 5006 24
+ 20 6174 * 0 * * * 6481 1024 0
+
+N 25 4176 6482 5588 4353 * 3992 5214 4800 3259 5219 4956 4300 7068 4238 1969 5576 5457 3564 * 3650 25
+ 57 4695 * 0 * * * 6481 1200 0
+
+N 26 5085 * * * * * * 3413 2922 5023 * 4773 5287 6796 1042 * 6587 2771 * * 26
+ 29 * 5653 * * * * 6481 0 0
+
+I 27 6636 4955 6720 5562 * 2599 5538 4524 3706 3633 6531 1455 * 3879 4180 6763 * 5692 6329 * 27
+ 16 6465 * 1177 842 0 * 6588 1173 1098
+
+Y 28 6109 * * * 3776 5220 7388 2217 3298 2859 2616 3733 * 5093 4215 * * 3895 * 4779 28
+ 119 * 3654 * * * 0 6472 0 1009
+
+I 29 5405 * * 4850 4751 * 3357 4442 4628 4657 * 3997 * 5319 5426 4819 1693 6216 5371 2414 29
+ 112 4478 5078 1600 577 3355 148 6349 1246 1686
+
+V 30 5560 * 4928 3289 5318 6400 5288 5027 3406 * * 3393 4286 3315 3382 3659 2633 4175 * 5833 30
+ 1312 3773 932 219 2831 1888 454 6364 1390 1870
+
+G 31 * * 2752 5369 * 2511 4046 * 2500 * * 2904 4416 * 2971 3230 * * * * 31
+ 33 5460 * 1000 1000 522 1719 6129 1026 4348
+
+G 32 6120 * 6293 6522 3937 1798 5183 * 4299 6236 6735 3167 4111 3128 3101 4807 5195 * 4476 * 32
+ 76 * 4276 * * 202 2933 6395 0 2145
+
+Q 33 * 6583 4596 6598 4935 6771 4044 7105 3565 7223 * 3470 3591 3504 2055 3470 4498 4678 5962 4463 33
+ 84 4149 * 1232 800 691 1394 6304 1309 1369
+
+C 34 * 78 * * * 4748 * * * * * * * * * * * * * 6045 34
+ 22 6045 * 0 * 0 * 6441 1037 1101
+
+K 35 * * * 6646 * * * 5016 468 4220 6945 * 4238 6161 5967 * 5850 4529 * 5016 35
+ 0 * * * * * * 6481 0 0
+
+R 36 5265 * 2950 2930 5774 5312 7116 * 2858 6172 * 4252 2280 4733 3461 4938 4640 5051 * 5553 36
+ 0 * * * * * * 6481 0 0
+
+V 37 5005 * * 2979 4999 * 4949 2930 3362 3355 5619 6114 * 3297 4100 5776 3989 2785 5006 * 37
+ 0 * * * * * * 6481 0 0
+
+N 38 * * 6938 6161 * * 2815 * 5410 * * 446 * * 5974 * 5006 * * 5016 38
+ 0 * * * * * * 6481 0 0
+
+T 39 6641 * * * 4423 * * 5760 6161 * * 6359 * * * 5049 420 6641 * 3171 39
+ 10 * 7116 * * * * 6481 0 0
+
+F 40 * * * * 238 * * 4007 * * * * * * * * 6190 4658 * 4773 40
+ 20 * 6158 * * * 0 6476 0 1000
+
+I 41 6024 * * * * * * 904 * 1870 * * * * 6890 * * 2570 * * 41
+ 0 * * * * * 0 6455 0 1102
+
+I 42 * * * * 5609 4981 558 5623 5500 3851 * 7060 * 4385 5811 * * 4629 * 4521 42
+ 0 * * * * * 0 6455 0 1102
+
+S 43 2016 * 3609 1953 * 3981 * * * * 4667 6872 * 7187 6891 3430 2571 5327 * * 43
+ 0 * * * * * 0 6455 0 1102
+
+S 44 6712 * 3785 5561 * 6478 6998 6539 * 5627 6207 3188 2397 6573 4392 2077 2220 5404 * * 44
+ 0 * * * * * 0 6455 0 1102
+
+A 45 3926 * 4537 3765 2252 5319 7143 4796 3562 3395 * 6475 2728 6070 7123 4950 6690 * 5163 3243 45
+ 65 4916 6478 461 1870 * 0 6455 1180 1102
+
+T 46 2441 * 3839 2863 * 3498 6105 7224 3371 * * 4287 3710 4717 3551 3764 4900 6504 4915 * 46
+ 0 * * * * 1696 532 6439 0 1177
+
+T 47 4799 * 2486 3187 7421 4879 6048 7268 3713 6827 * 2471 5161 3635 4941 3681 3416 5770 * 5802 47
+ 0 * * 3000 193 1381 699 6455 1000 1102
+
+V 48 7074 * * * * * * 1825 * 2618 * * * * * * 6095 908 * * 48
+ 0 * * * * * 0 6460 0 1037
+
+K 49 3328 6891 5824 4971 * * 6218 6317 1916 4231 5488 4567 * 2910 3265 5941 4095 3037 * * 49
+ 0 * * * * * 0 6460 0 1037
+
+A 50 1226 * 3983 5006 * 3719 6437 * 3346 7580 * 4298 5800 6879 4213 3715 3922 6181 * * 50
+ 0 * * * * * 0 6451 0 1037
+
+I 51 3995 * * * 4284 * * 1735 * 3102 5544 * * * * 6728 3635 1483 * * 51
+ 0 * * * * * 0 6451 0 1037
+
+C 52 * 0 * * * * * * * * * * * * * * * * * * 52
+ 16 * 6541 * * * 0 6451 0 1037
+
+T 53 4794 * 4723 5113 4826 2310 5876 5523 3697 5178 * 3461 * 5022 3243 3503 2965 7693 6553 4112 53
+ 178 3597 4901 124 3598 1250 787 6442 1591 1113
+
+G 54 6114 * 5312 5005 * 2276 4814 * 4383 5017 5731 2691 5109 3577 3754 4328 3238 4830 5847 4662 54
+ 39 5242 * 386 2091 2233 345 6509 1166 1256
+
+V 55 3251 * 4845 4375 * 3182 7244 3588 4063 4638 * 4575 1994 4967 4116 4275 4134 5590 * * 55
+ 4684 57 * 897 1111 757 1292 6522 5811 1188
+
+I 56 2795 5540 5185 5093 4013 4563 * 3856 4124 5725 * 3606 3492 3675 6016 5524 2434 5855 * 4672 56
+ 26 7311 6414 5781 26 * 0 6530 1000 1466
+
+N 57 4950 822 * 6702 * 4774 * * 4622 6682 * 5216 3385 5439 3602 4164 5531 * * * 57
+ 9 * 7404 752 1299 1362 711 6516 1173 1538
+
+M 58 7022 * 3755 3963 6550 * 7172 * 1471 4112 5352 4764 4169 4815 3815 5012 3766 5138 * 4024 58
+ 863 1187 6550 1880 457 1555 600 6531 3608 1342
+
+N 59 7339 * 3616 * 5349 4600 * * 4122 6669 * 609 * 6560 5377 5032 4512 6107 * * 59
+ 3196 167 * 1294 756 306 2385 6526 5503 1358
+
+V 60 * 6405 * 6584 4374 * 1347 5966 6640 * 6476 4589 6772 * 2907 * 3963 3229 6716 2890 60
+ 14 * 6716 * * 0 * 6573 0 1015
+
+L 61 5968 5521 4169 5411 * 5544 5392 3769 3147 3057 5790 4077 * 2879 2394 5019 3799 6145 * 6487 61
+ 53 5585 6025 0 * * 0 6577 1098 1000
+
+S 62 * * * * * 5233 5457 * * * * 4940 * * 5521 297 3607 * * * 62
+ 33 * 5471 * * 1011 989 6542 0 1262
+
+T 63 5281 6810 6128 3667 * 4749 5052 6929 3352 4696 4885 3475 3808 4632 3742 2224 3000 7433 * 7603 63
+ 0 * * * * 0 * 6509 0 1238
+
+T 64 4528 * 3985 3850 7171 4063 5256 6035 3728 6295 5300 3882 * 3452 4018 2134 3374 4507 * 6239 64
+ 0 * * * * * * 6584 0 0
+
+R 65 5038 * 6345 5313 * 6218 6424 4850 3341 3924 * * 1761 3353 3238 3205 4081 4875 * 7102 65
+ 0 * * * * * * 6584 0 0
+
+F 66 * * * * 1255 * * 3197 * 2984 3344 * * * * * 5886 2120 * * 66
+ 0 * * * * * * 6584 0 0
+
+Q 67 5844 * 3569 4019 7171 5816 4841 * 2964 * * 4873 1851 3893 3590 2964 4997 * * 5175 67
+ 0 * * * * * * 6584 0 0
+
+L 68 6392 * * * 6170 3669 * 2547 6309 1708 3689 * * 6172 * * 4716 1856 * * 68
+ 0 * * * * * * 6584 0 0
+
+N 69 4377 * * * 6628 * * 3551 * 6591 * 5629 5663 * * 5329 633 2876 * * 69
+ 30 * 5606 * * * * 6584 0 0
+
+T 70 6434 * 2249 4331 5297 * 4624 3277 5623 4088 6102 5244 * 4285 4897 4950 2638 3697 * 3570 70
+ 0 * * * * * 0 6589 0 1098
+
+C 71 * 0 * * * * * * * * * * * * * * * * * * 71
+ 63 4950 6635 1000 1000 0 * 6589 1309 1098
+
+T 72 6071 * 5571 4282 6335 * 6267 5063 2668 4461 * 2362 * 4513 2563 3892 3117 4148 * 6962 72
+ 112 * 3748 * * * 0 6575 0 1007
+
+R 73 5520 * * 4122 6767 * 3063 5338 6070 676 * 6680 * 6255 3872 * * 4834 * * 73
+ 76 * 4276 0 * 1917 444 6393 1098 1541
+
+T 74 5125 * 5266 4759 * * 6472 2941 3152 6618 4735 5401 * 4667 3502 4530 1460 4973 * 5904 74
+ 18 6354 * 0 * * 0 6279 1009 1839
+
+S 75 5120 6358 6618 4017 * 1786 6344 * 3308 * * 4653 4593 6354 3964 2014 3938 * * 6193 75
+ 4669 192 3555 125 3594 * 0 6279 5248 1839
+
+I 76 3335 * 4891 3748 6245 3244 * 4769 4233 5847 * 6695 4862 3954 4845 1688 3304 6386 * * 76
+ 223 4488 3343 992 1008 683 1407 6077 1312 2411
+
+T 77 4519 * * 6333 * * * 6500 2485 6616 6222 4548 3283 3023 2306 4053 2664 5777 6989 5985 77
+ 249 2658 * 0 * 93 3996 6278 1823 2058
+
+P 78 6084 6087 6034 * 5671 6784 3123 4316 4441 6247 4174 4351 2717 * 3434 4517 4929 5123 * 2010 78
+ 0 * * * * * 0 6575 0 1007
+
+R 79 * * 5546 * * 7551 * 6191 4693 5651 * 4949 740 * 4479 3644 3299 4524 * * 79
+ 0 * * 2000 415 0 * 6575 1007 1007
+
+P 80 5640 * 2385 * * 6055 4493 * 5879 7514 * 1852 2377 3888 4976 4115 4507 6073 * 5553 80
+ 0 * * * * * * 6585 0 0
+
+C 81 * 79 * * * 5550 * * * * * * * * * * * * * 4955 81
+ 10 * 7195 * * * * 6585 0 0
+
+P 82 3375 * 4460 4022 * 6506 3985 4635 2747 * 5059 4174 4492 4076 2080 4484 5313 6623 * 5177 82
+ 0 * * * * * 0 6320 0 1000
+
+Y 83 * * * * 4224 * * * * * * * * * * * * * * 79 83
+ 15 6615 * 1000 1000 * 0 6320 1015 1000
+
+S 84 5365 * 4309 3741 5495 7112 3703 * 2227 5513 * 3330 * 3590 2313 3679 4910 6181 * * 84
+ 0 * * 1585 585 0 * 6320 1000 1000
+
+S 85 3523 * 4074 4475 * 2176 6905 5290 4940 4386 6259 6156 6594 4107 * 2961 2066 * * 6583 85
+ 0 * * * * * * 6585 0 0
+
+R 86 6318 * 4375 4269 3789 7093 6580 3612 3251 6957 6180 4317 * 6533 4340 3037 1785 4213 * 6335 86
+ 16 6490 * 0 * * * 6585 1009 0
+
+T 87 4071 * 5715 4953 * 4419 6001 5392 3726 3891 6558 4480 3117 3302 4108 3160 3825 3801 * 3722 87
+ 0 * * 0 * 0 * 6573 1009 1009
+
+E 88 3760 * 4100 4764 4759 4216 6073 5876 3284 3188 4899 7097 4898 3495 3613 2803 3442 5959 * * 88
+ 22 6073 * 1000 1000 * * 6585 1036 0
+
+T 89 * * 5541 3337 4589 * 5425 4819 5315 6680 4832 2636 4410 3858 4588 3805 2026 5318 6867 4636 89
+ 23 5972 * 0 * * * 6585 1076 0
+
+N 90 4945 * 6032 5364 * 2234 4406 * 2107 * 5156 3787 * 3934 2118 5248 6211 * * * 90
+ 22 * 6019 * * * * 6585 0 0
+
+Y 91 6247 6636 5100 * 2471 6633 3478 3997 3577 4906 * 5474 5526 5417 3287 3870 4982 4205 * 2614 91
+ 0 * * * * * 0 6590 0 1056
+
+I 92 6366 * * * 3398 * * 1120 * 4458 * * 4882 * * 6946 * 2538 * 2529 92
+ 0 * * * * * 0 6590 0 1056
+
+C 93 6884 3101 6950 4949 5473 * * 2283 4654 3705 * 5449 * * 3306 6161 3674 2183 6055 4698 93
+ 0 * * * * * 0 6590 0 1056
+
+V 94 * * * * * * * 1755 * 2983 6391 * * * * * * 823 * * 94
+ 0 * * * * * 0 6297 0 1056
+
+K 95 1218 * * 6574 * 4069 * * 4274 3475 * * * 4975 6062 4672 2002 5456 * * 95
+ 0 * * * * * 0 6297 0 1056
+
+C 96 * 0 * * * * * * * * * * * * * * * * * * 96
+ 0 * * * * * 0 6297 0 1056
+
+E 97 5571 * 2527 1626 * 6277 5935 6426 4330 6483 6626 3175 * 4109 3846 4302 6166 4133 6664 * 97
+ 0 * * * * * 0 6297 0 1056
+
+N 98 * * 2945 5002 * 2217 5152 * 4341 * * 2207 2898 5725 3958 6142 * * 3346 * 98
+ 654 1455 * 3106 178 1035 966 6297 3202 1056
+
+Q 99 6735 * 5612 4227 4104 2253 * 4302 3896 2414 * 2956 * 4666 6140 * 5622 3048 6655 6692 99
+ 124 3606 * 1000 1000 * 0 6137 1464 1000
+
+Y 100 4911 * * * 4831 5217 * 3471 4481 2247 * * 6507 5669 4913 * * 1543 3545 3913 100
+ 0 * * * * * 0 6030 0 1000
+
+P 101 * * * * * * * * * 5940 * * 40 * * 6507 * * * * 101
+ 0 * * * * 0 * 6030 0 1000
+
+V 102 4938 4963 4478 * * * 6230 3983 * * * 4941 * * * * 5427 400 * * 102
+ 0 * * * * * * 6009 0 0
+
+H 103 5235 * * 6623 * * 334 * * 6435 * 6150 6527 * * 6268 4021 * * 4078 103
+ 25 * 5867 * * * * 6009 0 0
+
+F 104 * * * * 1438 * * 3916 * 1579 * * * * * * * 3734 5783 2872 104
+ 0 * * 0 * 0 * 6045 1056 1056
+
+A 105 3643 * 925 4390 * 5150 4502 5800 6947 4953 * 4271 * 4121 5239 * * 4047 * 5734 105
+ 26 5789 * 1585 585 * * 6042 1056 0
+
+G 106 3980 * 3646 2972 * 1720 * * 2741 5586 * 4396 5839 5321 3432 4164 6712 * 7093 * 106
+ 0 * * * * * * 5891 0 0
+
+I 107 * * 3427 5031 * 4405 * 2885 5937 4853 * 6154 * * * 2845 1998 2693 * 3562 107
+ 0 * * * * * * 5280 0 0
+
+G 108 * * * * * 0 * * * * * * * * * * * * * * 108
+ 0 * * * * * * 2239 0 0
+
+R 109 * * * * * * * * 1350 * * * * * 2231 1341 * * * * 109
+ 0 * * * * * * 2239 0 0
+
+C 110 * 0 * * * * * * * * * * * * * * * * * * 110
+ 0 * * * * * * 2239 0 0
+
+P 111 * * * * * * * * * * * * 0 * * * * * * * 111
+ 0 * * 0 * * * 1452 0 0
+
+//
+�HHsearch 1.5
+NAME f2a896c08302b679f64cd8e52af94835
+FAM
+FILE f2a896c08302b679f64cd8e52af94835
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:20:02 2013
+LENG 81 match states, 81 columns in multiple alignment
+FILT 43 out of 45 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 3.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
+>ss_conf PSIPRED confidence values
+964430474569999999999999999828989989999999843701777523556773210899999999898886029
+>Consensus
+xxrdxklgKisxexyxxqkvEILxALrkLGexLtxeExxFLxxxxxxxxsxFekVsxxxxxxgxxxxvlaxaxsqvxxxxx
+>f2a896c08302b679f64cd8e52af94835
+MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSIDQGAEDVVMAFSRSETEDRRQ
+>gi|242008131|ref|XP_002424866.1| conserved hypothetical protein [Pediculus humanus corporis]gi|212508416|gb|EEB12128.1| conserved hypothetical protein [Pediculus humanus corporis]
+-ERDFKLGQISEQQFNKCKKEFLTALKQLNENLNDEEIKFLNgNKSVSNNALFEKVTE-ESDKV--EAVVKQVAKEA-----
+>gi|154421834|ref|XP_001583930.1| leucine zipper protein [Trichomonas vaginalis G3]gi|121918174|gb|EAY22944.1| leucine zipper protein, putative [Trichomonas vaginalis G3]
+-KEAWHLKSITKQMYEEKAVEILTALQSLGESLSNEDAAFLKTQMSAKFSEFEESSN-SVNQAQQKSLIDKFGSEA-----
+>gi|340727909|ref|XP_003402276.1| PREDICTED: protein LZIC-like [Bombus terrestris]
+-DCGVKLGKLSKEVSDHQRAEILNALRQLGEKLEPQELQLLEklMLSNIDTTSYVQVPD-NVEKG--RMAMAVLHYST-----
+>gi|221106519|ref|XP_002158224.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
+-QLGISSGKLCGVFYQQQIVEILSALKKLGEVLTHSEEEYLRKNASAKLYQFSNVSE-TIG----DSLLKVVHKEV-----
+>gi|328874161|gb|EGG22527.1| Zinc finger protein [Dictyostelium fasciculatum]
+IQRDVKLAKISKDSYIDQSIEILYALKKLGFAISPEEENFLEQHKSRVMGDFEKVSG-NIGQGTKDNLMSNAATQIQK---
+>gi|124088302|ref|XP_001347044.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|145474481|ref|XP_001423263.1| hypothetical protein [Paramecium tetraurelia strain d4-2]gi|50057433|emb|CAH03417.1| hypothetical protein PTMB.219b [Paramecium tetraurelia]gi|124390323|emb|CAK55865.1| unnamed protein product [Paramecium tetraurelia]
+-DQDYTLQRINQAQYVKETLNCLNQLQDIGIPFTQQEINFINSN--TGKDNFV-IKQ-DNVQG--KTLLKSAEQQL-----
+>gi|308803242|ref|XP_003078934.1| leucine zipper and ICAT homologous domain protein (ISS) [Ostreococcus tauri]gi|116057387|emb|CAL51814.1| leucine zipper and ICAT homologous domain protein (ISS) [Ostreococcus tauri]
+-ERDAQLGKMTAEGAKTERVEVLTALKKLGAPLEDGELEFLRAHMTAGLADFVEek---------------------------
+>gi|170579733|ref|XP_001894960.1| leucine zipper and CTNNBIP1 domain containing [Brugia malayi]gi|158598270|gb|EDP36198.1| leucine zipper and CTNNBIP1 domain containing, putative [Brugia malayi]
+----HRLRKISDEIYEAKKLEILHALYKLNDHLSDEERSIIEAASRISDFQFELASNH-----------------------
+>gi|71998596|ref|NP_001022497.1| hypothetical protein ZK1248.19 [Caenorhabditis elegans]gi|33621047|gb|AAQ23126.1| Hypothetical protein ZK1248.19 [Caenorhabditis elegans]
+-----RSQKMPKQGYLERKFEILMALRRLEETLTEDERKFLSD--------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+M 1 * * * * * * * 949 * * 1053 * * * * * * * * * 1
+ 0 * * * * * * 2537 0 0
+
+N 2 5151 * 1644 2184 * * * * 3915 * * 3476 * 1859 * * * * * * 2
+ 0 * * * * * * 3922 0 0
+
+R 3 * 5291 * 4342 * * * * 5196 4658 * * * 3221 550 * 4605 * * 5219 3
+ 0 * * * * * * 3922 0 0
+
+E 4 4342 * 591 2652 * 3940 * * * * * 4830 * 5196 * * * * * * 4
+ 0 * * * * * * 3922 0 0
+
+G 5 3776 5275 * 4978 3627 3754 4355 4698 * 3061 3728 * * * * * 5687 1781 4458 3722 5
+ 0 * * * * * * 4031 0 0
+
+A 6 4383 * * * * * 3812 5739 1188 * 3282 * * 4577 3030 4331 3616 5331 * * 6
+ 0 * * * * * * 4043 0 0
+
+P 7 * * * * * 5647 * 3657 * 828 5896 * 3781 * * 3491 5049 2957 * * 7
+ 0 * * * * * * 4043 0 0
+
+G 8 5653 * * 4614 * 548 4836 * 4788 * * 5570 * 3065 4517 * * * * * 8
+ 0 * * * * * * 4043 0 0
+
+K 9 * * * * * 5675 5049 * 338 * * * * 4602 3616 4788 * * * * 9
+ 0 * * * * * * 4043 0 0
+
+S 10 * * * * * * * 1292 * 1321 3334 * * * * 3781 * 5668 * * 10
+ 0 * * * * * * 4043 0 0
+
+P 11 4234 5053 * 6156 * 4428 * * * 5541 * 3028 3456 * * 991 3085 * * * 11
+ 0 * * * * * * 4043 0 0
+
+E 12 3925 * 3949 2330 * 3940 * * 1688 4852 * * * 2942 3775 4614 * 5924 * * 12
+ 0 * * * * * * 4043 0 0
+
+E 13 3628 * 1922 1485 * * * * * * * * 5372 2213 * 5059 * 5143 * * 13
+ 0 * * * * * * 3965 0 0
+
+M 14 3403 * 5372 3635 5143 4588 * 3902 * 4565 3250 * * 2616 4482 4258 5972 2056 * * 14
+ 0 * * * * * * 3965 0 0
+
+Y 15 3166 5926 * * 3335 4037 4854 * * 4044 * * * 6047 * 5690 5684 * * 829 15
+ 0 * * * * * * 3965 0 0
+
+I 16 4485 * 3592 3273 * * * 2635 4675 3660 * 2789 * 3641 * * 2442 3628 * * 16
+ 0 * * * * * * 3965 0 0
+
+Q 17 3695 * 3488 2754 * * 5690 * 3038 5465 * * 5249 1630 3397 * 4295 5244 * * 17
+ 0 * * * * * * 3965 0 0
+
+Q 18 * 4613 * 3264 * * * 5244 3697 * * * * 649 3136 * * * * * 18
+ 0 * * * * * * 3965 0 0
+
+K 19 3441 * * * * 5766 * 5143 929 * * * * 5173 2916 3398 3628 * * * 19
+ 0 * * * * * * 3965 0 0
+
+V 20 3380 * * * 3660 4132 * 4325 4613 2149 5734 * * * * * * 1208 * * 20
+ 0 * * * * * * 3965 0 0
+
+R 21 * * * 237 * * * * * * * 3628 * * 3822 * * * * * 21
+ 0 * * * * * * 3965 0 0
+
+V 22 5244 3628 * * 4613 * * 571 * * * * * * * * * 2483 * * 22
+ 0 * * * * * * 3965 0 0
+
+L 23 * * * * 5533 * * * * 68 5366 * * * * * * * * * 23
+ 0 * * * * * * 3965 0 0
+
+L 24 4898 * * * * 5173 4552 5953 * 3822 3196 3024 * * * 3492 1392 4240 * 4198 24
+ 0 * * * * * * 3965 0 0
+
+M 25 237 * * * * * * * * * 3822 * * 3628 * * * * * * 25
+ 0 * * * * * * 3965 0 0
+
+L 26 * * * * * * * * * 0 * * * * * * * * * * 26
+ 0 * * * * * * 3965 0 0
+
+R 27 * * * * * * * * 1550 4854 * * * 2725 1290 * 5566 * * 4552 27
+ 0 * * * * * * 3965 0 0
+
+K 28 * * 3628 * * 5173 4855 * 846 * * 5372 * 2619 3660 4859 * * * * 28
+ 0 * * * * * * 3965 0 0
+
+M 29 * * * * * * * 3628 * 297 3248 * * * * * * * * * 29
+ 0 * * * * * * 3965 0 0
+
+G 30 * * 5769 3660 * 335 * * 5249 * * 3582 * * * * * * * * 30
+ 0 * * * * * * 3965 0 0
+
+S 31 3572 4855 3737 843 3821 * * 3628 * * * * * * * 3365 * * * * 31
+ 0 * * * * * * 3965 0 0
+
+N 32 4659 * * 3388 * * 4552 * 1942 * * 3164 2997 3207 * 4041 3610 3750 * * 32
+ 0 * * * * * * 3965 0 0
+
+L 33 * * * * 3628 * * 3751 * 243 * * * * * * * * * * 33
+ 0 * * * * * * 3965 0 0
+
+T 34 * * * 2916 * * * * 5059 5249 * 4613 * * * 1522 1244 * * * 34
+ 0 * * * * * * 3965 0 0
+
+A 35 3268 * 2633 4078 * * 5143 * * 5465 5684 4859 1489 3628 4854 4818 3972 * * * 35
+ 0 * * * * * * 3965 0 0
+
+S 36 5372 * 3248 1000 * 5428 * 6040 * * * * * 3024 * 2375 5926 * * * 36
+ 0 * * * * * * 3965 0 0
+
+E 37 * * 2616 257 * * * * * * * * * * * * * * * * 37
+ 0 * * * * * * 3965 0 0
+
+E 38 3693 * 4854 1706 * * * 2868 4167 2471 * 5766 * 5649 4035 4809 5059 4516 * * 38
+ 0 * * * * * * 3965 0 0
+
+E 39 2280 * 5005 2337 * * 4962 * 3338 5249 4855 2703 * 2867 * 3972 5734 * * * 39
+ 0 * * * * * * 3965 0 0
+
+F 40 * * * * 324 * * 3829 * 3592 * * * * * * * * * 4379 40
+ 0 * * * * * * 3965 0 0
+
+L 41 * * * * * * * 2661 * 248 * * * * * * * * * * 41
+ 0 * * * * * * 3965 0 0
+
+R 42 3663 * * 1890 * * * * 4859 * 5766 2777 * * 2035 2851 3837 * * * 42
+ 191 3014 * 782 1257 * * 3965 1338 0
+
+T 43 2156 * 3757 3457 * * * * 3084 * 4573 3343 * 4258 * 2541 2966 * * * 43
+ 0 * * * * * * 3965 0 0
+
+Y 44 4366 * * 4959 5282 * 1930 * 4546 3873 * 1631 * 4481 * * 5116 * * 3016 44
+ 113 * 3737 * * * * 4038 0 0
+
+A 45 1910 * * * * * * * 3653 * 2806 2910 * * * 1544 4820 * * * 45
+ 0 * * * * * 0 3775 0 1113
+
+G 46 * * * * * 2514 * * 4661 * * 2333 * * 4269 1698 2474 4416 * * 46
+ 43 * 5090 * * 0 * 3775 0 1113
+
+V 47 1404 * * * * 5194 * 2402 5637 * * * * 5767 2904 4582 3347 3418 * * 47
+ 0 * * * * 0 * 4045 0 1000
+
+V 48 2472 * 3344 * * 2978 * 4237 3604 5575 * 4572 * * * 2247 4253 2911 * * 48
+ 0 * * * * * * 3980 0 0
+
+N 49 5315 * 4271 * 3998 * 4894 5882 3711 1251 3736 3272 * * * 4122 3694 * * * 49
+ 0 * * * * * * 3980 0 0
+
+S 50 2980 * 3089 * 4271 5613 * * * * * 3280 * 5079 5112 1379 3313 * * 4754 50
+ 0 * * * * * * 3980 0 0
+
+Q 51 4061 * 2712 2992 * * 6163 * * 4572 * 2612 * 1549 4454 4188 * * * * 51
+ 0 * * * * * * 3980 0 0
+
+L 52 * * * * 310 * * * * 4024 4894 * * * * * * * * 3344 52
+ 0 * * * * * * 3980 0 0
+
+S 53 * * 4915 918 * * * 5007 * * * * * 3821 * 2938 * 2284 * * 53
+ 173 * 3143 * * * * 4047 0 0
+
+Q 54 * * * 3587 * * * * 1194 4088 * 3882 * 1725 4308 * * * * * 54
+ 46 4986 * 1000 1000 585 1586 3727 1000 1206
+
+L 55 3871 * * * * * * 3210 * 3268 * * * * * 4261 * 583 * * 55
+ 56 * 4712 * * * 0 3964 0 1019
+
+P 56 5018 * * 5449 * * * 4922 3690 * * 5208 2750 * * 1182 2188 * * * 56
+ 77 5404 5155 0 * * 0 4017 1000 1110
+
+P 57 3537 * 3300 2074 * 2996 * * * * * 3266 4734 2480 * 3875 4044 * * * 57
+ 2396 * 304 * * * 0 4007 0 1179
+
+H 58 2036 * * * * * 403 * * * * * * * * * * * * * 58
+ 0 * * * * 63 4539 2143 0 2891
+
+S 59 4724 * 1935 3292 * 5554 * * * * * 2036 * * * 2184 3139 * * * 59
+ 0 * * * * * 0 3868 0 1019
+
+I 60 5225 * 5153 * * * * 1879 * 3014 * 3520 4680 * * 2432 3781 2597 * * 60
+ 0 * * * * * 0 3868 0 1019
+
+D 61 3232 * 2202 3102 * 1578 * * * 5153 * 3189 * * * * * 3520 * * 61
+ 90 * 4048 * * * 0 3868 0 1019
+
+Q 62 2982 * * * * * * * 2303 4603 * 4623 * 1335 * 2596 5195 * * * 62
+ 47 * 4967 * * * 0 3808 0 1200
+
+G 63 2703 * * 3953 * 621 * * 4498 * * * * * * * 5042 4133 * * 63
+ 1442 * 662 * * * 0 3784 0 1265
+
+A 64 2485 * * * * * * * * * * * * 2714 3397 2383 1387 * * * 64
+ 0 * * * * * 0 2547 0 2477
+
+E 65 * * * 2240 * * * * 1907 * * * * 1303 * * * * * 3104 65
+ 0 * * * * 144 3391 2423 0 2477
+
+D 66 4128 * 1745 2229 * 5383 * * 2221 * * 4653 * * 3770 4588 * * * 4716 66
+ 0 * * * * 1277 767 3923 0 1085
+
+V 67 3626 * 5385 * * * * 3889 2087 * 3927 2640 * * 4643 2851 3568 3277 * * 67
+ 0 * * * * * 0 3901 0 1019
+
+V 68 2908 * * * * * * 2436 * 1583 * * * * * * * 1522 * * 68
+ 0 * * * * * 0 3901 0 1019
+
+M 69 * * * * * * * 3928 * 666 2355 * * * * * 4245 4159 * * 69
+ 47 4964 * 0 * * 0 3901 1000 1019
+
+A 70 1187 * 2586 * * * * * 2076 * * * * * * 2671 * * * * 70
+ 0 * * * * * 0 3901 0 1019
+
+F 71 5058 * * * 3277 * * 4036 3378 2942 5480 5104 * 4159 * 2465 * 1781 * * 71
+ 0 * * * * * 0 3901 0 1019
+
+S 72 732 * * * 3928 * * 4964 * 4759 * * * * * 3277 * 2641 * * 72
+ 0 * * * * * 0 3901 0 1019
+
+R 73 2662 * * 2987 * 1239 3700 * * * * * * * 3277 3156 * * * * 73
+ 0 * * 1000 1000 0 * 3901 1019 1019
+
+S 74 * * 4898 * 5538 * * 5427 2747 * * 3945 4644 3620 * 1078 3680 * * 4839 74
+ 0 * * * * * * 3965 0 0
+
+E 75 * * * 1224 * 3967 * * * * * * * 1209 * 3724 * * * * 75
+ 0 * * * * * * 3965 0 0
+
+T 76 2755 * * * * * * 2797 * 2644 * * * 4644 * * 2904 1417 * * 76
+ 0 * * * * * * 3965 0 0
+
+E 77 * * * 1170 * * * * * * * * * 848 * * * * * * 77
+ 0 * * * * * * 2016 0 0
+
+D 78 * * 495 * * * * * 1784 * * * * * * * * * * * 78
+ 0 * * * * * * 2016 0 0
+
+R 79 * * * * * * * * * * * * * * 729 * 1334 * * * 79
+ 0 * * * * * * 1669 0 0
+
+R 80 * * * * * * * * * * * * * * 0 * * * * * 80
+ 0 * * * * * * 1099 0 0
+
+Q 81 * * * * * * * * * * * * * 0 * * * * * * 81
+ 0 * * 0 * * * 1099 0 0
+
+//
+�HHsearch 1.5
+NAME f2afa8933c4998c89a5c39f692e949bb
+FAM
+FILE f2afa8933c4998c89a5c39f692e949bb
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:13:42 2013
+LENG 203 match states, 203 columns in multiple alignment
+FILT 142 out of 1066 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
+HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH
+HCC
+>ss_conf PSIPRED confidence values
+9987379999990246364699999999998999999999999971688760898899998861626788998764488999999999637889999988
+9999999871899999999999987467872899998599998888516789976668752798742056869886456999999999865999999999
+639
+>Consensus
+xxxxxlpxLpyxxxxLepxiSxxxlxxHxxxhxxxyvxxlNxxxxxxxxxxxxxxxxiixxxxxxxxxlxxxxxxxaxxxxNHxxfxxxLxpxxxxxpxx
+xLxxxIxxxFGSxdxfkxxfxxxAxxxxGsGWxwLvxxxxxxLxixxtxnxxxpxxxxxxPlLxiDvwEHAYyldYxnxrxxYvxxxwxxinWxxvxxrx
+xxx
+>f2afa8933c4998c89a5c39f692e949bb
+PYPFKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVG
+ELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFF
+KKA
+>gi|220922215|ref|YP_002497517.1| manganese and iron superoxide dismutase [Methylobacterium nodulans ORS 2060]gi|219946822|gb|ACL57214.1| manganese and iron superoxide dismutase [Methylobacterium nodulans ORS 2060]
+-MPYAIKPLGCDPARIK-GMSERLIVSHYENNYGGAVKRLNLIEEQLAGLDYETTPGF-----V-INGLKREQLIAMNSMILHELFFGGLGQES--EPGP
+VLRKAIARNFGSFERWRSEFIAMGKALaGGSGWVLLSWSPrDGQLVNQWAADHAHTLA-GGVPILALDMYEHSYHIDYGARAATYVDTFMQAIRWENADR
+LFFDL
+>gi|338197129|gb|EGO89303.1| Fe/Mn family superoxide dismutase [Clostridium botulinum C str. Stockholm]
+-----------------KGMTSKQLDEHY-KLYLGYINKINEIDKMSKN-----sqfysgS------NPTY-STMRSlKMGetYSLDGVILHQYYFQNIT
+NSN--dYISDKLINIICTQWGCLDNFLSYLKEV-CL-AMRGWAVVCFDPLtSLLRITGSdLHDYGPIW-CSYPILVIDVYEHAYFMDFGTNRAKYIDVMF
+KNLNWKVISSRFNK-
+>gi|50285897|ref|XP_445377.1| hypothetical protein [Candida glabrata CBS 138]gi|49524681|emb|CAG58283.1| unnamed protein product [Candida glabrata]
+---HVVPKLPNGQelsrRGIPKVLSKDGFDLVWSQQQGYVCDKLTLATAGTS-LESYLPFHILLKTAKNQH--QSHIFNLASAAHNNHLFIENILPVTee
+GsalsetNKPSRLLEARLVDSFgHGWDQVKEEMVKSATDnVIGEGWLFLVENSNKELHILTIQNNGTPYyfprnqlfdMnsAirpeeyqhtksvkelvdk
+AselgkkvddwTMPLICVNLWDHAYLADYGvQNRAKYVRNVLDNLNWSVVNNRLF--
+>gi|336373225|gb|EGO01563.1| hypothetical protein SERLA73DRAFT_103425 [Serpula lacrymans var. lacrymans S7.3]
+---HSRKELPYKVEEgLGNFLPPNALKVVAEEYQQGLLDRLNDEVRGTA-EDKMTVAQIVLSTSQSYE--KAMAFNYASLALNNSFFLDNLKPPPpradn
+pgelgnhEGHLNGTYLHsAFRSQMGSLEHFKSSFCAAATGMAGTGYVWLVTDRSGSLAYFPTFAAGTLLvrsrrqvyddkysvlgegspsptdpqsatlg
+stptspvsglarappslnpsspsrtlhtspvsridtagagpsvysagtnepdapnatfrdirSLGEvlIPLFCVSVHEHCWMSaGYGVwGKEAWLKEFWS
+VLDWEKVVKAYTKF
+>gi|322493666|emb|CBZ28956.1| putative superoxide dismutase [Leishmania mexicana MHOM/GT/2001/U1103]
+---FYLPRIDYDVGQgVAPLMSRKQFDVQYHVFHKAAVDRLNAHTLGSE-LEGHNLNVVIRNSS-FDA-SRAVIHAAASEHFNYCFWYRSLRPW-GTAVP
+ARLKEELQLQYSqngTagaVEEVQRLFTVAALSQQSaGGWVYLVWT-GKTFDVIPFDHGTCPIGSDLIPLLALNTHESARCYDYPLAaedeegdeVERFV
+RNFFKTCNWRLVEHYFLQ-
+>gi|164688120|ref|ZP_02212148.1| hypothetical protein CLOBAR_01765 [Clostridium bartlettii DSM 16795]gi|164602533|gb|EDQ95998.1| hypothetical protein CLOBAR_01765 [Clostridium bartlettii DSM 16795]
+-------KLNYNFYDLNDFINSNELKYSYCQ-YGAYLDNLNHILKDYKEFKDASLKDLLTNLDSMPDEIALKVKINASNALNYEYFFNNLSSE-KTFAKG
+KILKEINNSFSSFDNFKKEFEKIALNS-NSDWIFLALNSQNKLYLTTSKEVSSPVIYKDKIILCLNLDKEI----YS-NREQIIHNFLNYVDWNIANKNY
+NS-
+>gi|255714643|ref|XP_002553603.1| KLTH0E02684p [Lachancea thermotolerans]gi|238934985|emb|CAR23166.1| KLTH0E02684p [Lachancea thermotolerans]
+--SYIAPSLEHLArgKGVRGLFSEKGLQTAWFDRADFYTENLNKYMGQSE---EKPLENIVYENAKSAS--KRDIFNNASMLYNLRFALSCLRANDLPsv
+tekpgpqsllaTPSlelkfsndprdngnEKLSAALASSFGSLVEFRSLLLNSNRAISGDGFTWLVARKvqsmhhesvisgTvefDWLYVLNTYNAGSPFN
+fnrvghmsdlkkqlsklqtveetpssnpfqmksveearetesyrdITYVPLLAIDASPKAWITDYGVfGKDLYLERVWESIEWNVVEQRL---
+>gi|340053388|emb|CCC47677.1| conserved hypothetical protein, fragment [Trypanosoma vivax Y486]
+--------------------------------------------------------------------LKRRVNFIASEDFSRKFEEECMRS-SSAVP-S
+EWRNVVTQQFGAMEVLETELVKRAISRREPGWTWLVYDGRrcvdQRLVGMNLPANQTPLTHGLWPLAAVNMTEGALV-----------------------
+-------
+>gi|291412421|ref|XP_002722485.1| PREDICTED: MHC class I-like family A1-like, partial [Oryctolagus cuniculus]
+--------------------------------------------------------------------SGGLLRLGAGGEVECESFLIP-TPHSCFSST-
+----------------------------------------------------------------------------------------------------
+---
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+P 1 * * * * * * * * * * * * 0 * * * * * * * 1
+ 0 * * * * * * 2123 0 0
+
+Y 2 4235 * * 5055 * 2483 * * 4452 4383 1268 6118 4768 4654 * 4732 5962 * * 3564 2
+ 136 4004 5178 684 1405 * * 5099 1113 0
+
+P 3 2989 * 6677 4486 6387 5314 * 5150 3138 * 3041 5610 2961 4763 6374 2709 3359 4578 * 5094 3
+ 65 5193 5914 1397 689 0 * 5887 1329 1000
+
+F 4 3789 * 6372 * 1837 6617 2179 5514 5276 5637 * * * * * * * 4596 * 1759 4
+ 49 4913 * 1150 864 * 0 6284 1130 1021
+
+K 5 3745 * 6468 3149 6869 5128 4826 5059 3667 5843 * 6347 5121 4762 4025 2621 2188 3951 * 5892 5
+ 0 * * * * 924 1080 6267 0 1096
+
+L 6 6026 * * * 6167 * * 3500 6856 945 4286 * 4237 4369 4603 5821 5246 3103 * * 6
+ 16 6543 * 1000 1000 0 * 6347 1002 1012
+
+P 7 4997 * * 6705 5986 6878 * 4502 3521 5304 5642 * 760 6853 4425 * 4065 4557 * 6586 7
+ 11 * 6992 * * * * 6378 0 0
+
+D 8 4371 * 2572 3137 * 6528 * * 2496 * * 5587 1969 * 4477 4243 3308 7209 * * 8
+ 0 * * * * 0 * 6407 0 1000
+
+L 9 * * * 6629 6309 6513 7672 4604 5342 332 5592 * 5100 * * 6955 * 4538 * * 9
+ 0 * * * * * * 6461 0 0
+
+G 10 4143 * 3901 4611 * 4948 * 6620 3944 5471 6440 4778 897 5957 6513 3722 7008 6629 * * 10
+ 14 6670 * 0 * * * 6461 1005 0
+
+Y 11 6405 6579 * 6407 2336 * 5308 * 6198 5090 * 4303 * 6377 6438 6817 6750 * 5151 788 11
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+E 157 4307 * 3500 3765 5598 3542 5073 5118 4122 3852 * 4690 4987 4113 4423 4258 3829 3975 3352 4759 157
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+G 158 5044 6724 3196 4336 * 1208 7618 7103 4346 * 6039 3156 6353 5151 4828 4743 4266 * 7106 7027 158
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+F 159 4171 6094 4975 4912 3611 3965 4240 3710 3810 2479 5498 4765 5093 5174 5726 3871 4313 4567 * 4530 159
+ 221 2815 * 1416 677 843 1176 6802 2106 1025
+
+T 160 5630 6941 * 4681 5970 6460 3672 2453 4257 4174 5443 5164 5864 5410 4274 5404 3179 2579 5853 3745 160
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+F 200 6371 * 6821 * 2290 * * 5830 * 1531 7010 7011 * * * * * * 4575 1500 200
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+K 202 2439 * 4897 3871 6151 4136 * * 2673 6420 6349 3268 * 2669 3622 3655 5718 5555 * * 202
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+A 203 1115 5285 * 5239 3330 3554 * 3084 5770 3571 * * * * * 4036 * 5627 * * 203
+ 0 * * 0 * * * 5257 0 0
+
+//
+�HHsearch 1.5
+NAME f431126caeda0da6cffa83c7e49df465
+FAM
+FILE f431126caeda0da6cffa83c7e49df465
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:15:21 2013
+LENG 217 match states, 217 columns in multiple alignment
+FILT 137 out of 1430 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.1
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCEECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEE
+ECCCCCEEECCCEEEEEEEECCCCCCEEECCCCCEEECCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCEEE
+EEEEECCCCEEEEEEEC
+>ss_conf PSIPRED confidence values
+9189777978996799799999961788888679999958999848999997215788603266557617999516898168998245523474489999
+5488721653425788875102476213158740132284699999963656998699989984157731145572599689999999950005898799
+99993898874899969
+>Consensus
+xxxxxxpxxxxxxxGxxvxLxCxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxLxIxxxxxxDxgxYxCxv
+xxxxxxxxxxxxxxlxvxxxxxxxpxvxxxxxxxxxxxgxxxxlxCxxxxxxPxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxdxgxyx
+Cxvxxxxxxxxxxxxxx
+>f431126caeda0da6cffa83c7e49df465
+EVKLVESGGGLVQPGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKADGYTTEYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCTR
+DPYGPAAYWGQGTLVTVSAAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVT
+CSVAHPASSTTVDKKLE
+>gi|338724447|ref|XP_003364946.1| PREDICTED: hypothetical protein LOC100629784 [Equus caballus]
+DTKVTQrPGHLVKGKEQKAKMTCVP---IKAHIHVYWYRRKLEGEFEFLVYLQ---NNDVIDKIEGFDQQFSAQCPK-NASCSLEIKSTEPGDSALYFCA
+SSESTvLNDTFDKSEVAYV---GPVDAKIYQMPAFLLTGVEQDVTLEC----------------------------------------------------
+-------------------
+>gi|168985006|emb|CAQ10833.1| major histocompatibility complex, class I, C [Homo sapiens]
+----------------------------------------------------------------------------------------------------
+-----------------------HPKTHVTHHL---VSDHEASRR-WNLpevgscggAFWrRAEIHVPCaaRGAAGAPHPE-------------------
+----------------------------
+>gi|341890830|gb|EGT46765.1| hypothetical protein CAEBREN_12792 [Caenorhabditis brenneri]
+---------VVLPSGHALRLECSAYSAPT--GSIQWTFEG--------VVIS--GSDKTNRTENEFNkEALVSE--SMSVLSELHIDCPQ---SGRYTCS
+ATNSFdtitaQATVRIEGHHRHCHPTK--GPKISQYSDMRLELNGNTASVWCD--S-SNQDVSWSWstRSDGEITTDDHY-LVK-D-nE------LIIKN
+VSWNDtKSYFCQASNSYGSVTRE----
+>gi|221330930|ref|NP_001137898.1| CG42256, isoform F [Drosophila melanogaster]gi|220902492|gb|ACL83253.1| CG42256, isoform F [Drosophila melanogaster]
+--------------------vaknpaaeikytallqvKGSVLAYPS--QKLN-TEHK-KRKPHKYRshllskl---------------------------
+-kLSQCSLTLAA----slkp----FI--------------------------------------------------------------------------
+----------------------------------------------
+>gi|149597420|ref|XP_001520231.1| PREDICTED: similar to butyrophilin [Ornithorhynchus anatinus]
+--VIGPAEPVLALEGGDTEMPCHLNPKESAEFmEVRWFRSR----PSNIVHLY--DNREELFREQmeEYQGRTELVRDAmDYGSVAVRLLNVRVSDEGNY
+HCSFYDG----NTVDRAPLELQVvGSTAQCSIFMEHFSWIS-----LILDLFP-DWIPDlfPI-LQMrelsEGGVNIKCPKSYGIGHTCTMFSLddifgn
+fisaplfptaLSLMVALGVT--LPVLGLIIAGglyLIWKQNMDIEK-
+>gi|259089625|gb|ACV91668.1| RT02067p [Drosophila melanogaster]
+---------LRVLVNSSAQIKCDVGSSQADDkvLLVVWYK---NNLPIYSYDTRGAHAGTPSHWRDEevLEDRAVFRTH--KEPAELIINPVKEKDAGNF
+RCRVD-------FKLSqtrnsnVNLEV---VVPPTQPIIFNERRLRIDSragpyeegGSLEVTCVVYGGSPPPT-VIWlMNGQLQNSVVDYTYDGAiNSK
+LVV---RNLSRIHQ-HAVYTCQASNFHKKYVATN-IT
+>gi|335300333|ref|XP_003358857.1| PREDICTED: OX-2 membrane glycoprotein-like [Sus scrofa]
+----VVTQDVRERLNTPASLRCSLQN-PQEVLIVTWQKIKAVS-PENMITFS---KNHGVVVQPAYKDKINITQLGLMN-STITFWNTTLEDEGCYKCL-
+-----FNTFGAGKISGIACLTLSvQPTVSLHYKLSED----QLNITCSANAR-PAPM-ISW--KISGSGIENSTEILVhpNGTTSVTSILQIKDPKSQvG
+KEVICQVLHLGTVTDYRETV-
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+
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+
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+
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+
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+
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+
+C 22 4975 124 * * 5532 * * * * * * * * * * 6496 * 6692 * 6928 22
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+
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+
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+
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+
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+
+T 28 3885 6485 4298 3736 5439 5058 5911 5897 3718 5403 * 3986 2094 4296 5660 3197 3220 6884 6783 7112 28
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+
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+ 472 4696 2055 1551 602 2143 370 10597 1514 3476
+
+T 30 3490 * 3036 3724 * 3257 4847 * 4485 5427 * 4471 3984 4724 4168 3098 3351 5120 * 4038 30
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+
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+
+M 34 6968 6633 * * 3889 5790 6532 1967 * 2434 5013 * * * * 6919 6102 1498 5955 5596 34
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+
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+
+W 36 * * * * 4245 * * 6536 * 5291 * * 7053 * * * * 4429 223 * 36
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+
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+
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+
+Q 39 6691 * 3125 4100 * 3491 5573 6777 4023 4875 6476 3958 6329 1958 3643 4103 4196 3955 * * 39
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+
+P 40 4280 * 2635 4321 5437 3575 4523 4425 2620 6364 5339 4025 4474 6281 3587 4454 3735 * * 5815 40
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+
+G 42 4117 * 2917 4695 6605 1767 5355 * 4243 * 5930 4359 4693 5322 3873 3186 4097 7176 6740 6887 42
+ 15 6581 * 0 * 2124 376 10506 1041 3757
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+
+A 44 3183 * 4315 3462 5655 2689 6906 4746 4830 4702 5106 4401 3615 4299 5559 3173 3530 5890 * 6569 44
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+L 45 4874 5827 4430 4099 4202 5786 6446 3918 4898 2544 5761 6786 2312 5212 4747 3989 5811 3258 6627 * 45
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+W 47 5008 * 4459 5080 3133 4671 6891 3927 4680 2496 * 4661 5156 5297 3457 4377 4660 3509 4381 4550 47
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+
+T 182 4376 5529 4610 4593 5209 5282 4426 5665 5734 4710 4649 3986 5588 3841 5028 2417 2169 5556 6825 6969 182
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+
+M 183 3566 6664 * 6597 4574 4923 * 3673 4001 2926 3709 5610 6877 6485 5494 3541 3672 2281 6657 5101 183
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+
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+S 209 4974 * 4734 2545 * 4213 4747 * 2934 6403 * 5259 2675 4223 5111 3076 3499 4640 6245 * 209
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+
+T 210 3130 * 5895 2861 6106 4630 5886 * 3632 5504 5559 3773 * 4356 4317 3124 2515 3762 * * 210
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+
+T 211 3888 * 3598 3610 4198 5080 6238 * 6000 6007 * 2864 2066 4980 3704 3711 3945 6198 * * 211
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+
+D 213 4762 * 3856 2704 * 5750 * 4524 * 5744 5887 3902 * 3654 3949 2911 2092 3958 * * 213
+ 22 * 6019 * * * * 9062 0 0
+
+K 214 1935 5662 * 5765 * 5761 5693 3515 3450 4298 5580 5570 5347 4101 2841 4746 4690 3434 * * 214
+ 0 * * * * 0 * 8830 0 1000
+
+K 215 5525 * 5733 3693 4106 5665 5788 * 3230 5762 5616 2670 * 4191 3564 2848 2583 5497 * 5923 215
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+
+L 216 5535 * * * 2708 * * 2596 * 1464 4503 * * 5484 * * 5424 2266 * * 216
+ 0 * * * * * * 8557 0 0
+
+E 217 * * 4905 2059 * * 4794 4942 * 4720 * 3779 4619 4810 3635 * 1656 3772 * * 217
+ 0 * * 0 * * * 7368 0 0
+
+//
+�HHsearch 1.5
+NAME f56a6e550ea46518bc972010f973cfbd
+FAM
+FILE f56a6e550ea46518bc972010f973cfbd
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:05:14 2013
+LENG 216 match states, 216 columns in multiple alignment
+FILT 138 out of 1345 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 10.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CEEEECCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCHHHCCEEEEEEECCCCCEE
+ECCCEEEEEEEEEEEEEEEEEECCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCEECCCCCCEEEEEECCCCCEEEEEEEEECCCCHHHCEEEEEEEE
+ECCCCEEEEEEHHHCC
+>ss_conf PSIPRED confidence values
+9299889978997999799999970788788708999990799983799970564466678737986069816999856776558689999980788347
+6362689999731012469981786068649849999998357799819999999999867752014577289858888999981278775908999999
+1897589998355089
+>Consensus
+pxxxxxxxxxxxxxGxxvxLxCxxxxxxxxxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxLxixxvxxxDxGxYxCxvxxxxxxxx
+xxxxxxlxvxxxxxxxpxvxxxxxxxxxxxxxxxxlxCxxxxxxpxxxxvxWxxxxxxxxxxxxxxxxxxxxxxxxxxxsxLxixxxxxxdxgxytCxvx
+xxxxxxxxxxxxxxxx
+>f56a6e550ea46518bc972010f973cfbd
+PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFV
+FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT
+HEGSTVEKTVAPTECS
+>gi|326703679|gb|AEA06491.1| MHC class I antigen [Macaca mulatta]
+----------------------------------------------------------------------------------------------------
+--------------------------------htiqtmygcdlgpdgrllrgyeqyaydgrdyfalne--DLRSWTAADMAAQN----------------
+tqrkweaagvaeqw----RAYLEGECLEWLRRYLEKGK------------------et--LQ------
+>gi|332257155|ref|XP_003277679.1| PREDICTED: poliovirus receptor-related protein 2-like [Nomascus leucogenys]
+--GRPPaPARTPSNLtfraGEAEHLPRPPPAPrAPSR-VSPSWLAPPTPTPYTSDS-LEETLTPPFCiSltttpillnptAHPTPACLSPSP--------
+---------------FLGFP-----RRKAKPENQAEAQKVTFSQDPTT----VALCISKEGRPPA-RISWLSslDWEAKETQVSGTL-----AGTVTVTS
+RFTLVPSGRADGVTVTCKVEHES-------------
+>gi|296246053|gb|ADH03430.1| variable region-containing chitin-binding protein 3 [Branchiostoma floridae]
+-MTVRTtHTEVEVHAGGTVELPCAYQLANDTQPPVISWLKG-AAPDRSTKVFKGNYnwqgeglgfvesdSYKESFGDFLGRasvANLAAPTLRLTHVHPQ
+DGGRYWCQVAQWSIRTEFGLDAKsvvLKVTGH--TPSnNVHVSTAEVVQVDEGnDITMTCPCTNCAN---ANvTWYTGPtffenyetgtyqplaNKNQFG
+ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQSELDADRS-----
+>gi|149597420|ref|XP_001520231.1| PREDICTED: similar to butyrophilin [Ornithorhynchus anatinus]
+--VIGPAEPVLALEGGDTEMPCHLNPKESAEFMEVRWFRSRPS--NIVHLYDNReelfrEQMEEYQGRTELVRDamdYGSVAVRLLNVRVSDEGNYHCSF
+YDGN---TVDRAPLELQVVGSTAQCSIFMEHFSW-----ISLILDLFP-DWIPDlfP-ILQMRelSeGGVNIKC--PKSYGIGHTCTMFSLddifgnfis
+aplfptaLSLMVALGVT---LPVLGLIIAGglyLIWKQNMDIE-----
+>gi|47211727|emb|CAF92525.1| unnamed protein product [Tetraodon nigroviridis]
+--DVTVsQSSVQVARGQAAILPCSFTTSAALNNLNIIWMViplSNANQPEQVPKHNNGrtkNPQPTNPNtwvRvniFTHTHTHTHTHTHTHTHTHTHTHT
+HTHTLVALGS-----VPgplncsiRHLFRK-VN-SPSDCPVLgvcASGL----CVPALLVCMCDVPI-FP-SVSWLRSESwFVAT-----PQIGCPD---
+QIQGTVTLKNISTSTSGLYQCTSSN---------------
+>gi|327265502|ref|XP_003217547.1| PREDICTED: macrophage colony-stimulating factor 1 receptor-like [Anolis carolinensis]
+--------------------------------------------------------------------------IRLRRVGMDDNGWYKCRALVQG-Q--
+-----WVQ-------SPKIGLIVKGFIIFYYIFTYFFVTAHCIVL-AFGSY-----CK----CHIKLELSFK-----------------------ICILT
+K----KQSAL------
+>gi|170588355|ref|XP_001898939.1| Immunoglobulin I-set domain containing protein [Brugia malayi]gi|158593152|gb|EDP31747.1| Immunoglobulin I-set domain containing protein [Brugia malayi]
+-------EDNNIYEKDHLELICILPLN-d-D--FDVVWMRDDV-qLAY---------------PERHVTIYSQKFITTLDDISSNESGNYECIAKSKN-T
+Hiyrs---YTLHIKINVVVAPHIVGTEEEYEHLAKYGEKAELVCPIEGEPEP--LYRWLKNGIEYNg-YGSLT-------------KKIDFPRVLVEDKA
+TYTCVAKNRAGSQQ---------
+>gi|313240002|emb|CBY32362.1| unnamed protein product [Oikopleura dioica]
+------PDTECVPNNGKLVFE---avvANEA----LGTKWFR--NGQEIT------------SqNTHFKIEQRGRTRKLIIENANLMDDGLFEIRAGEEK
+------SSCEVHV-----LEAPTAVTKGFEDLQLveGEDAKFTA----TLsTAHGRFKILKDGIEFGLNDN--QTVTRDG----AVVNFEIKKISKSDAG
+FYE--------------------
+>gi|3702284|gb|AAC62834.1| PTPsigma [AA 524- 1926] [Homo sapiens]
+------------VPGQPMNLRAEARSE-TS--ITLSWSP--P-RQE-------------SIIKYELLfrEGDHGREV---------GRTFDPTTSYVVED
+LK--PNTEYAFRLAARSPqglG------AFTPVVRQRT-----------------------LQSKPSAPPQDVK--------------------------
+-CVS-----------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+P 1 4431 * * * * * 4054 * 3123 * * * 361 * * * * * * * 1
+ 0 * * * * * * 6585 0 0
+
+S 2 4359 * 5238 * 3750 5070 * 2435 5195 3112 5135 * 3388 * * 3809 3785 2319 * 5349 2
+ 0 * * * * * * 8887 0 0
+
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+ 0 * * 2807 222 * * 9515 1000 0
+
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+ 24 * 5917 * * * * 10015 0 0
+
+T 5 6043 * 6327 2981 6005 4299 4949 4350 5173 3173 5762 5008 5885 5232 4318 3475 2032 3614 * * 5
+ 0 * * * * 0 * 10005 0 1037
+
+Q 6 4565 * 6224 5269 * 6151 * 5910 3304 4071 * * 3075 1369 5040 3576 3816 4803 * * 6
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+
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+ 0 * * * * * * 10541 0 0
+
+P 8 3718 * 3772 3389 6605 3180 6429 6627 5497 * * 4645 2153 4218 4176 3194 3536 6433 * 6647 8
+ 14 6737 * 0 * * * 10563 1000 0
+
+S 9 4603 * 4126 3551 6569 4990 4509 4584 5013 4640 6574 3781 3077 5117 5604 2432 3348 4123 5950 6739 9
+ 0 * * * * * * 10651 0 0
+
+A 10 4786 * * 3931 4944 5594 6615 3713 6810 2468 4999 * 5576 3520 5180 6574 4648 1590 * 5694 10
+ 92 4021 * 0 * * * 10684 1886 0
+
+S 11 5219 * 4445 3357 5012 6613 6796 4442 5099 3365 5136 5792 6589 4561 3732 2771 2408 3699 * 5598 11
+ 0 * * * * * * 10724 0 0
+
+G 12 2135 7146 * 6784 5175 4005 * 3923 5851 2637 6798 * 6769 5795 5742 6587 4535 1715 * 6767 12
+ 12 * 6969 * * * * 10970 0 0
+
+S 13 3846 * 4910 5085 4376 5154 4795 3992 3723 2937 6667 5385 4554 3856 4374 2877 4109 3930 5984 5868 13
+ 13 * 6851 * * 0 * 11004 0 1000
+
+L 14 3485 * 5877 1932 5775 5334 6997 5357 4285 3501 6939 5886 3565 5406 4802 3968 4826 3026 6895 5844 14
+ 11 7068 * 1585 585 * 0 10910 1000 1037
+
+G 15 * * 6808 3957 * 598 6758 * 5954 6790 * 3433 6214 5915 4770 3965 * * * 6913 15
+ 0 * * * * * 0 11059 0 1037
+
+Q 16 4837 6994 2172 2529 6805 2707 5429 6918 4344 6738 * 4631 * 3718 4663 3119 4962 7202 * * 16
+ 0 * * * * * 0 11102 0 1037
+
+S 17 4797 5774 3048 5431 6088 * 5952 * 3664 * * 3073 3238 4436 4639 2362 2548 6033 * * 17
+ 0 * * * * 0 * 11102 0 1037
+
+V 18 2186 * * 7746 5055 7021 * 3365 7246 2655 5210 * 6813 * * 5361 4763 1427 * 7322 18
+ 0 * * * * * * 11143 0 0
+
+T 19 5014 * * 3336 6108 6868 5988 3745 4991 3677 6194 3950 4574 5061 4193 3914 1868 3680 * 5400 19
+ 0 * * * * * * 11143 0 0
+
+I 20 6808 * * * 3077 * 7936 3185 7021 708 3778 * * * * 6981 * 4109 * * 20
+ 0 * * * * * * 11143 0 0
+
+S 21 4763 * 4663 3744 5991 4280 5004 5316 5057 6353 5432 3594 2860 5412 3313 3153 2734 5063 6936 6093 21
+ 12 * 6948 * * * * 11143 0 0
+
+C 22 4437 258 * * 6869 * 7322 5394 7016 5422 * * * * 7928 6346 * 4981 * * 22
+ 0 * * * * * 0 11130 0 1019
+
+T 23 4979 7928 4173 4093 4464 4890 4537 4422 3712 3743 7061 3568 4423 3973 4366 3512 3447 3600 * 5799 23
+ 11 7063 * 0 * * 0 11130 1000 1019
+
+G 24 2461 7014 7066 7001 3171 5762 6984 3421 * 3777 5861 5250 6007 7016 6869 5018 5901 2098 * 2888 24
+ 34 6020 7001 1585 585 0 * 11130 1342 1019
+
+T 25 3886 * 4008 4430 6165 4001 4650 6039 3787 5890 5996 4365 4618 4416 4065 2093 3323 5456 5730 5994 25
+ 76 5837 4873 2296 328 * 0 11134 1164 1001
+
+S 26 4975 6903 3927 4427 6877 1892 7100 6914 5962 3266 6991 4043 3839 4602 6077 3104 3655 5202 * 5892 26
+ 49 * 4891 0 * 1603 576 10976 1000 1845
+
+S 27 4097 6835 4279 3456 2870 3974 * 5272 5670 3834 5846 3839 3699 5524 5972 3056 3910 4967 6065 4696 27
+ 200 6965 3042 1585 585 891 1117 10924 1000 2246
+
+D 28 4489 * 3242 4053 4411 5752 4051 5623 3686 3806 5863 3469 3885 4725 5182 3128 4381 4430 5782 5222 28
+ 75 7154 4511 3000 193 413 2008 10920 1072 3779
+
+V 29 4795 5126 4029 4366 5337 5298 * 4541 4396 3031 5979 4728 2329 5877 6413 3312 4331 3632 * 4314 29
+ 209 * 2890 * * 3498 134 11061 0 2513
+
+G 30 3129 * 4415 3289 * 4127 * 6660 3221 3959 * 4409 4743 4242 4471 3239 3104 3783 * 5600 30
+ 421 5720 2093 551 1655 4760 54 10986 1141 4723
+
+G 31 4804 6939 2808 3664 6117 4010 4741 6355 3532 4799 6257 3506 3510 4291 3975 3306 4576 5282 * 6199 31
+ 1250 6180 821 1000 1000 5385 35 10447 1045 7087
+
+Y 32 4051 5387 4155 3312 3990 3583 4013 * 5270 4174 5125 3384 3945 5242 * 4273 4979 3527 * 3584 32
+ 432 2286 4215 525 1714 86 4119 8678 2015 9516
+
+N 33 3694 * 6997 4991 4456 6040 4693 3528 3928 2805 4734 4643 2841 5925 5830 4667 3742 3755 6821 4631 33
+ 11 * 7020 * * 1194 829 10943 0 2145
+
+Y 34 3643 * 4921 3448 * 5405 4999 4896 4378 3992 5471 3703 6888 3860 3825 2979 3098 3760 6846 5465 34
+ 11 7095 * 1259 781 721 1347 11104 1157 1757
+
+V 35 6168 6928 * 6989 3358 5852 5906 2555 5874 2733 6050 7713 * * * 6094 6080 1375 5228 4668 35
+ 0 * * * * * 0 11130 0 1196
+
+S 36 4708 * 4957 4336 3647 7146 5466 5812 3526 5015 7007 4548 * 4158 3531 2768 2549 4267 * 3790 36
+ 12 * 6924 * * * 0 11130 0 1196
+
+W 37 * 6795 * * 6436 * * 5931 7229 6055 7058 * * 6826 5813 6954 6845 5380 223 6684 37
+ 34 6047 6912 609 1539 * 0 11102 1232 1439
+
+Y 38 6014 5858 6860 5004 2773 5934 4947 4484 4106 3062 4874 4704 * 5408 4639 4775 3895 4325 5910 2297 38
+ 11 * 7015 3000 193 1836 474 11098 1047 1619
+
+Q 39 6968 6151 5029 5979 4624 4936 6014 5884 1928 4070 5365 4961 5383 5514 2164 4801 * 3557 5394 4895 39
+ 455 4357 2175 1674 543 2064 394 11098 1866 1589
+
+Q 40 4878 * 4291 4049 * 3262 4033 5650 4382 5080 6315 4555 5693 2233 6550 2941 5619 3280 * 4631 40
+ 50 * 4879 * * 4879 50 10842 0 5388
+
+H 41 4024 6842 2832 6562 * 3711 4351 * 3092 4485 6864 3864 4521 6604 3662 3275 3295 4572 * 4873 41
+ 137 5132 4016 2369 310 364 2166 10793 1285 5599
+
+A 42 3779 6785 3002 4253 5716 4459 4797 5235 3970 4583 6817 3273 2677 4395 6902 3329 4753 4410 * * 42
+ 137 3749 5955 982 1019 1233 800 11047 2232 3077
+
+G 43 3665 * 3158 4364 6931 1652 5305 * 3456 6743 * 3889 4852 4287 4855 3848 4520 7075 * * 43
+ 68 5420 5477 719 1350 1572 591 11059 1324 2651
+
+K 44 4041 6035 3891 2797 6959 3544 6867 5958 2928 5353 * 3975 4312 3324 4508 3597 4504 4460 6859 * 44
+ 193 5400 3300 0 * 2271 335 11011 1328 2481
+
+A 45 3511 6701 4392 3183 * 3325 5928 4811 3627 3854 4125 3913 3452 5265 4514 4202 4071 4803 * 6877 45
+ 108 4070 6329 1062 941 1236 797 10963 1885 3935
+
+P 46 4481 6709 4335 4315 4619 7186 * 3537 5978 2223 6755 4682 2643 4121 5301 4038 3952 3935 * * 46
+ 142 5904 3693 1329 732 2132 374 11008 1162 3135
+
+K 47 4453 * 3628 2809 * 4669 4718 3351 3651 5283 5797 3837 5233 3602 3592 4019 3973 4474 * * 47
+ 156 * 3287 * * 3198 167 11006 0 4000
+
+V 48 5031 * 6890 4756 3496 6872 * 4136 4699 2758 5713 4545 5622 5258 3949 4033 3458 2802 4259 3995 48
+ 155 * 3298 * * * 0 10771 0 5190
+
+I 49 4001 6653 5452 4559 4585 4873 5305 2628 3721 2452 4903 * 4322 * * 5197 5492 2561 6125 5371 49
+ 69 4421 * 1679 540 4047 90 10555 1652 6240
+
+I 50 3288 5513 6363 6586 4553 3987 5510 2616 4502 3151 5481 5070 6878 5029 5722 3574 4568 2947 * 4655 50
+ 181 5821 3323 2292 329 5130 42 10508 1211 6008
+
+Y 51 4359 6645 3831 * 3160 5634 4327 4989 5614 4409 * 6434 5511 5422 4217 3146 4160 4161 4206 2318 51
+ 65 5676 5348 649 1464 * 0 10817 1200 6774
+
+E 52 * 6464 4011 4153 4894 3647 4821 4197 2941 3974 * 4004 4263 5399 4490 4090 3477 3542 * 4151 52
+ 79 4225 * 1199 825 4676 58 10740 1596 6933
+
+V 53 5600 6263 3572 4497 5497 3599 4548 5708 3857 4732 6590 3463 4488 5318 3936 3641 3030 4094 6298 4185 53
+ 60 4613 * 888 1121 5444 34 10774 1667 6777
+
+N 54 5435 * 3269 5414 * 2643 4534 6517 4483 5443 * 3568 4041 4898 4207 2344 3583 5002 5412 * 54
+ 729 1464 4871 1941 435 5216 39 10318 5391 6793
+
+K 55 4906 * 4009 3559 * 3810 6050 5304 3419 3499 6456 3316 5324 3738 4793 3561 3610 4470 * 3909 55
+ 17 6455 * 3700 115 3650 120 10734 1019 6923
+
+R 56 4187 * 5632 4250 4846 4239 4888 4460 4810 3419 5368 3941 4647 3643 4677 3429 4892 3336 * 3289 56
+ 16 * 6497 * * 2600 260 10797 0 6600
+
+P 57 3742 6486 4401 3413 6848 3592 4897 6622 5471 4594 5156 4460 3799 3522 5096 3124 3959 3672 4931 5523 57
+ 25 * 5880 * * 2588 262 10524 0 6002
+
+S 58 4947 * 4291 3064 5116 3788 4747 4379 3449 4793 6664 4299 3186 4571 4032 3335 3467 5684 * * 58
+ 92 5038 5007 1040 961 5150 41 10796 1360 5579
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+E 214 * * * 1302 * * * * 2497 2545 * * * 2570 * * * 3690 * * 214
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+C 215 * 460 * * * 2898 * * * * * * * * 2846 * * * * * 215
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+
+//
+�HHsearch 1.5
+NAME f72d3b0c4bbb6e49ce2af6496d1b71a0
+FAM
+FILE f72d3b0c4bbb6e49ce2af6496d1b71a0
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:03:08 2013
+LENG 218 match states, 218 columns in multiple alignment
+FILT 130 out of 1347 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
+HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHCCHHHHHHHHHCCCCC
+CCCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+9469993799804999999999859997799846664111257778851988888789889989876699999999867989999999999999999999
+9999999887301279999999999999999999986439802689999999999999999998472111118899999999984899999987476776
+776774454588788998
+>Consensus
+MxxxLxxxxxspxxxxvrxxLxxxxixxxxxxvxxxxxxxxxxxxxxxxxpxxxvPxLxxxgxxlxeSxaIxxyLxxxxxlxxxxxxxxaxxxxxxxxxx
+xlxxxxxxxxxxxxxxxxxxxxxxxlxxxlxxlexxlxxxxylxGxxxtxaDxxxxxxlxxxxxxxxxxxxxxpxlxxxxxxxxxxpxxxxxxxxxxxxx
+xxxxxxxxxxxxxxxxxx
+>f72d3b0c4bbb6e49ce2af6496d1b71a0
+MSPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVL
+DIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIA
+WPLQGWQATFGGGDHPPK
+>gi|151967108|gb|ABS19434.1| multivalent antigen sjFABP-97 [synthetic construct]
+MSSFLGKWKLSE------------SHNFDA--VMSKLGVSWATRQIG------------------NTVTPTVTF-----------TMDGDTMTML----T
+ESTFKNLSVTFkfGEEFDEKTSDGRSVKSVVTKDSESKI-----TQTQKDSKNTTVIVREIVGDTMKTTVTVDDVTAIR-------NYKR----------
+--------------------
+>gi|145240759|ref|XP_001393026.1| hypothetical protein ANI_1_2296074 [Aspergillus niger CBS 513.88]gi|134077550|emb|CAK96694.1| unnamed protein product [Aspergillus niger]
+-----------------AIALEALNTPYNVKLWEFGndREKgV---KGEVFLRINENgrVPALEDpnTGVVSWESGACMNYVRRVYDKenflGPKGsEQD
+IVDFEKweyfllstlgpmTGQTNWYRHYNGTKNEDALQ------RYSAQTERCYGVLEGQLKKSggQSVLPGRITAVDYHFEPWVREYDFAGLS-LEKYP
+LITQWLRVMTGRKEVQQAYiKI-----------------------
+>gi|336366382|gb|EGN94729.1| hypothetical protein SERLA73DRAFT_143587 [Serpula lacrymans var. lacrymans S7.3]gi|336379053|gb|EGO20209.1| hypothetical protein SERLADRAFT_400352 [Serpula lacrymans var. lacrymans S7.9]
+--LWTVP--GMRQAIVIRSVAALAGLQLDLPEYKHF--EDNKKPEFTAKFPHGKIPALETADGFkLFEGAPIARYLSTLApnsNLLGTNDQEAALVDQWV
+HFAESeISTPNDIMWQmlngylTPYNKPIHNTLAERQLRAINTLETVLATRTFLVTERITLADIVVASSFQRAVGLaiDASARAKLPNTIRHFETLANQP
+KLKEIFGETTYVEKAA---------------
+>gi|254282669|ref|ZP_04957637.1| glutathione S-transferase, N-terminal domain [gamma proteobacterium NOR51-B]gi|219678872|gb|EED35221.1| glutathione S-transferase, N-terminal domain [gamma proteobacterium NOR51-B]
+--LKLINAGPSPFGRKVMVALHEKSIPFKVEWDIPWH----KDTVVTVHNPLQQLPILIaDDGETVFESSYILEWIDTRFPeppLTPSDPEARLEMGRFR
+VLSVGIMDALVRTNFEVSrPlehqsQEWVQRHIRKINGGLAELDREIQDRNFVVGNELTLGDIEVGCVLGqldFIAENIPPlkeffaehvpWRSDCKYLS
+RYADRLCQRPSFVAS--------------------------
+>gi|294892437|ref|XP_002774063.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]gi|239879267|gb|EER05879.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
+--VNIYQYEICPYCNKVKAFLDWQQVPYKTMDVNPLTKGE---IRFS--KDYRKVPIAFIDGVQVNDSAEIIKKLVEVLGrenvtkQMQDA-EISKWVDW
+TDNKLAVLLFPnLTrtfgesfeafgyimnipHMWlPMKmvnrllggwamwmANDKIRKKydiddEREDLLKCIDEwTLDlAARGGKFHGGPSPDLADVAV
+YGCIRSLEGFTThhWLLRNHTDLLAWYNRMFR---------------------------------
+>gi|340914821|gb|EGS18162.1| hypothetical protein CTHT_0061770 [Chaetomium thermophilum var. thermophilum DSM 1495]
+MVYRLYITNknYSSWSLRVWLLMRQLDIPFIEEFRPMISGT-FSQPQWKEFSPVARVPCLhVLPDnphtdsepLILWDSLSITTFLSLSHPekpIYPSSP
+QALAWslsaVAEMHSSFTSLRDHLAMNIGVRVQlsYPLPAGVVNDLQRLNTLWTEGLTrfGGPWLVGKEFSAVDAFYAPVALRLRTYVGLEEEFFSReAK
+GWVERVLGLESVREWVR------------------------
+>gi|124266174|ref|YP_001020178.1| hypothetical protein Mpe_A0981 [Methylibium petroleiphilum PM1]gi|124258949|gb|ABM93943.1| hypothetical protein Mpe_A0981 [Methylibium petroleiphilum PM1]
+----------GPWSEAAKAILHVKKLAHVKVRqelLG-------SNLPLIRWTAQATAPVAVWNGEPPRSTWIEQLYLFEWLApepaLIPRDVDERMLMf
+glaneifgengfvwNRRHLMVRDFSGPDQPpeiresfrFLGRKygCGDAAAAAAPARCAEVMGLLADRLRSQRergsrYCVGASLTALDLYAACAYALVS
+PLPQDLCAMTPLFRAVYT-------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 0 * * * * * * 7232 0 0
+
+S 2 3501 * 4651 4537 * * * * 3311 * 4631 * 3561 * * 1371 2945 3531 * * 2
+ 766 1280 * 866 1148 * * 7717 2544 0
+
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+ 73 4346 * 502 1768 * * 9665 1397 0
+
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+
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+
+G 6 * * * * 3155 3936 4245 3505 5155 4046 * * * * 5428 6309 4359 3193 6297 1372 6
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+
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+
+W 8 6201 6411 5451 6216 2282 5211 4029 6119 * 3759 6488 4750 * 5287 4177 3533 3263 5542 3378 3073 8
+ 49 5568 6382 2807 222 * 0 9824 1107 1007
+
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+
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+
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+ 0 * * * * * * 10040 0 0
+
+G 12 3627 * * 4976 * 2435 6473 5048 * 4560 * 5115 1133 6580 * 4196 4152 6343 * * 12
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+
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+ 15 6586 * 0 * 1448 659 10057 1000 1589
+
+V 14 2478 2592 * * 6793 3281 6768 * 6341 * * 6561 6563 * * 1938 3064 3065 * * 14
+ 0 * * * * 1043 959 10106 0 1317
+
+Q 15 3844 6616 6723 2568 4576 * 4746 6520 6679 2965 4582 5002 6423 2987 2409 * 4694 5197 4989 5825 15
+ 53 4780 * 1867 462 * 0 10162 1490 1083
+
+P 16 3112 5619 * * 5128 6635 6596 4869 1983 4384 4915 * 4687 5011 2031 4520 7079 3620 * * 16
+ 0 * * * * * 0 10227 0 1083
+
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+ 0 * * * * * 0 10247 0 1083
+
+R 18 5735 4935 6951 4381 6740 6818 5984 4831 4168 2678 5774 6189 6343 4540 1329 6861 5764 5661 4531 4791 18
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+
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+
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+
+L 21 2643 4561 * * 4181 6392 * 4300 * 688 4665 * * * * * * 5664 * * 21
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+
+E 22 2486 6126 4477 2655 5064 4763 4218 5763 3449 3748 6826 4478 * 4916 3003 6046 4749 5830 6745 7008 22
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+
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+
+L 24 2517 4205 * * 5951 5812 6672 * 2047 2516 5915 5336 6385 4099 6781 3673 5106 4996 6662 4606 24
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+
+E 25 6848 6914 3831 3347 * 1375 5829 * 3353 6665 * 2708 * 4176 4253 4549 * * * * 25
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+
+E 26 4021 6623 6875 6929 5244 * 6494 2000 6870 1861 5860 7062 5628 3967 * 6955 5438 2320 * * 26
+ 34 5404 * 1315 741 1325 735 10349 1495 1233
+
+K 27 4221 * 2643 3728 * 6914 5604 6757 3439 6706 6307 4679 1612 4920 4516 3621 5283 * * 6900 27
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+
+Y 28 * 6698 5745 * 1921 6707 5214 4472 * 4278 5285 * * 7114 * 6418 5614 3252 4395 1486 28
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+
+E 29 4138 * 3335 1807 * 5903 * 4441 3184 * 6886 4444 * 4107 4005 4956 2847 4658 * * 29
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+
+E 30 4567 * 3207 3105 5118 5719 5286 3582 5166 3117 6496 4852 * 5125 5384 4773 3067 3128 5911 4378 30
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+
+H 31 5757 6994 5989 3180 5383 5221 4422 2988 2787 6005 6603 5597 * 4838 4951 4456 3793 2064 * 6862 31
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+
+L 32 4191 * 3693 2931 4322 5320 5382 5349 4904 3917 6830 4803 3048 * 3112 6839 4404 3657 4599 4158 32
+ 44 6623 5655 1585 585 1052 950 10243 1002 1873
+
+Y 33 3977 5784 * 5877 4017 5820 4675 2274 5536 2840 5239 5930 6802 * 6858 6871 * 1807 6550 4343 33
+ 41 6925 5646 0 * 1444 661 10322 1000 1692
+
+E 34 3500 5892 2130 3486 * 3331 4934 * 3995 5377 5690 3471 4243 5639 6289 4205 3737 5834 * 5954 34
+ 103 * 3862 * * 2497 281 10321 0 1692
+
+R 35 4964 5523 4606 4288 3416 4147 * 4171 4687 2817 4067 5166 3053 * 4721 4152 4107 4095 6565 4706 35
+ 177 5172 3513 2786 226 3694 116 10258 1289 2776
+
+D 36 4031 6468 3135 4532 5704 3502 4437 4986 4575 3398 4142 4342 3562 4787 5793 3858 4726 4831 5179 4874 36
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+
+E 37 3261 6428 3047 3516 6250 4990 * 4076 3698 4829 * 3083 4162 6453 3603 4292 3339 5210 6054 * 37
+ 369 4685 2422 4269 77 4430 69 9743 1276 5904
+
+G 38 5956 * 4033 4308 * 1650 5476 3927 3004 5964 4772 4290 4296 5933 3539 4926 * 6035 5696 5933 38
+ 168 6102 3392 0 * 2571 266 9450 1000 6802
+
+D 39 3437 * 2909 1666 4934 4406 * * 3831 5946 * 4886 3341 4876 5053 4920 5022 4939 * * 39
+ 329 4271 2718 2069 393 1679 540 9540 1334 6546
+
+K 40 4539 * 3773 2661 6053 5030 2739 * 6247 5036 6124 3406 4576 3144 4689 3753 4096 4801 * 6001 40
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+
+W 41 * * * 5943 3494 4630 4571 4746 4727 3392 3779 5843 4211 4724 4193 4545 * 5753 1708 4716 41
+ 315 4556 2702 0 * 705 1372 9426 1187 7388
+
+R 42 2904 * 5157 4764 4631 4492 4539 6356 3007 3191 5374 3578 4053 4266 4386 3741 5253 5173 6700 5546 42
+ 36 * 5337 * * 1689 535 9884 0 5042
+
+N 43 3602 * 3943 4494 * 4969 * * 3618 4491 * 3138 3426 4251 4258 2341 3384 4444 * * 43
+ 0 * * * * 1413 679 10003 0 4225
+
+K 44 2372 6537 3786 2790 * 5335 5854 6442 3980 3467 5647 5736 2173 5184 5026 6379 6562 5657 * 6567 44
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+
+K 45 4054 * 2852 2191 6556 4844 5643 5787 2909 6829 6482 6795 4395 4021 3988 3365 5026 6673 5216 * 45
+ 32 * 5505 * * 1867 462 10181 0 3247
+
+F 46 4693 * 6709 5060 2638 5704 5642 3921 6552 2435 5740 6362 4336 * 4576 5062 4665 3893 5677 2459 46
+ 47 6440 5618 0 * 1579 588 10172 1000 2938
+
+E 47 3372 * 4413 4086 5690 4103 5780 4700 3200 2280 6815 4976 6589 4648 3405 4055 4353 4205 * * 47
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+
+L 48 3307 * 4095 3383 4579 4057 6518 6109 2311 4522 6550 4642 5505 3481 3344 4445 5622 4816 * 6670 48
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+
+G 49 5581 5693 5082 4987 5103 4643 * 2260 4303 2118 6688 5582 5595 4958 5253 5133 4520 3008 6444 5493 49
+ 29 6615 6702 3700 115 1398 688 10023 1000 3390
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+L 50 3397 6361 4995 6573 5095 3981 4230 5686 4623 4794 6876 1812 6625 5089 6438 2733 3833 5299 6910 6589 50
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+
+E 51 4974 * 4984 4420 5756 4374 6666 5748 * 4553 5955 6847 791 5674 4159 4710 6725 6668 * 5925 51
+ 29 5642 * 2415 300 2678 245 10234 1215 1961
+
+F 52 5199 6893 * 6790 2568 4724 5239 5791 4569 2414 4638 3988 6669 4236 4445 3886 4324 4187 6351 3684 52
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+
+P 53 4017 4647 5148 3825 * 1285 4954 * 3534 5784 5186 6940 3777 * 4724 4670 5212 5659 * 5636 53
+ 52 4831 * 2503 280 1123 887 10231 1416 2014
+
+N 54 4323 * 6881 4894 * 5678 4641 6858 2094 4079 6623 3893 * 2697 3267 4019 3375 4585 * 6517 54
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+
+L 55 5211 6727 6334 * 5779 6892 6503 2649 * 1933 4982 * 5174 5765 * 5138 4469 1625 * 5903 55
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+
+P 56 4859 * * * * * * * * 6843 * * 122 * * 5168 * 6671 * * 56
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+
+Y 57 2811 4181 * * 4342 6031 * 3467 5658 3636 4919 * * 6859 6509 5163 2979 1870 6909 4112 57
+ 67 4460 * 0 * 2759 231 10353 1670 1798
+
+Y 58 4830 * * * 3803 6373 * 2727 5720 780 4896 * * * * * * 4049 6810 5283 58
+ 287 2471 * 813 1215 2623 256 10382 3834 1661
+
+I 59 5351 * 6182 2623 4741 6913 5967 3939 3851 3373 5432 6955 * 4507 4368 7094 3494 1961 6363 5800 59
+ 190 3017 * 260 2599 * 0 10397 2907 1531
+
+D 60 4602 * 1649 3606 4707 4545 4427 4270 * 4220 7301 4214 4497 5823 5346 3889 4479 4643 5878 6875 60
+ 87 4101 * 1034 967 1894 452 10397 1908 1531
+
+G 61 5865 6546 2019 3965 * 2328 4743 6757 3458 * 5970 2952 4594 4347 5916 4805 5220 * * 6672 61
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+
+D 62 4908 * 2371 3606 * 1138 6688 * 5925 6543 * 3873 5933 4725 7017 6763 4284 6764 * * 62
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+
+V 63 4836 * 4638 3184 4427 4398 6702 4102 3427 3394 6202 5031 5405 4466 3896 4391 3408 3195 * 4892 63
+ 91 4515 5830 887 1123 * 0 10480 1665 1083
+
+K 64 3720 6148 * 4793 5252 5714 6769 3551 4013 4983 * 5147 3758 4571 3852 4147 3217 2170 6712 4995 64
+ 41 5966 6369 0 * 773 1269 10445 1165 1431
+
+L 65 6786 6640 * * 4788 * 6959 2344 5709 1262 4619 6404 6713 6744 6705 5041 6555 2574 * 6191 65
+ 11 6984 * 3807 107 1137 875 10467 1000 1380
+
+T 66 3245 4998 6945 * 3059 3790 5305 4373 5813 6746 5171 4195 4981 5257 5825 3587 2469 4719 4385 4191 66
+ 0 * * * * * 0 10510 0 1133
+
+Q 67 6709 * 1976 1464 * 3319 6879 * 6783 * 6762 6197 5583 3198 * 4010 5756 6374 * 6573 67
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+K 218 * * * * * * * * 0 * * * * * * * * * * * 218
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+
+//
+�HHsearch 1.5
+NAME f7a5e37dc7250be9dd8e0efc7b40d3b7
+FAM
+FILE f7a5e37dc7250be9dd8e0efc7b40d3b7
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 11:56:32 2013
+LENG 93 match states, 93 columns in multiple alignment
+FILT 106 out of 642 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 7.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
+>ss_conf PSIPRED confidence values
+986899999999999998389999898998999999987026675467633155302557876844877628865988999988887787789
+>Consensus
+xxxCxxvxxxLxpClxyxxgxxxxPxxxCCxxvxxlxxxaxxxxdrxxxClCxxxxxxxxxxixxxxaxxLPxxCxvxxpxpixxxxdCxxix
+>f7a5e37dc7250be9dd8e0efc7b40d3b7
+AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
+>gi|224133474|ref|XP_002328051.1| predicted protein [Populus trichocarpa]gi|222837460|gb|EEE75839.1| predicted protein [Populus trichocarpa]
+--KCEPVFEYFPYCLDFLTGYYNKPSKRCCDHIYKLNRLAKRGLGAQLICWCIEYMVRGTEpQIRADRISELPTKCQTHLSFPISEWKDCNTyslLS
+>gi|222619541|gb|EEE55673.1| hypothetical protein OsJ_04081 [Oryza sativa Japonica Group]
+-----QVALKLAPCAAGHAEPARRGAAQLLRAGAQHRA--------NPKCLCavMLSNTARSAGVKPAVAMTIPKGWAIaNRP-------------
+>gi|4154350|gb|AAD04945.1| lipid transfer protein [Pinus radiata]
+AIECSDVLSRPVHCLSYFVTPRAtlTPTSACCRESEEVLGMANSMGAKEDLCNCFVGLIRGFR-PNPNKIEGLLSSCALQLFFPIDPVTalpDCTQIQ
+>gi|11120788|gb|AAG30968.1|AC012396_4 hypothetical protein [Arabidopsis thaliana]gi|12323696|gb|AAG51810.1|AC079676_5 lipid transfer protein, putative; 26937-27275 [Arabidopsis thaliana]
+---LTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEK-------DAPCLCIAFnNPEVLKalNLTKENALLLPKACGVNPDV--S---LCSKI-
+>gi|52076890|dbj|BAD45903.1| hypothetical protein [Oryza sativa Japonica Group]
+---CLTPLLSMMSCADYLTNSSaQTPPGTCCEGFKSLVST-------APICLChgINGDLSKFlPlPVDMMKMMTLPNTCGATVPLQ-----------
+>gi|77551590|gb|ABA94387.1| Protease inhibitor/seed storage/LTP family protein [Oryza sativa Japonica Group]
+--YCRDSLSGLLACRDFMFGGAAAASPACCAAYSAAFD-------ADPFCLCYIADgvYGRSTgyDVNVTHALEIPVSCGLATP-PIE---------
+>gi|255540483|ref|XP_002511306.1| hypothetical protein RCOM_1508440 [Ricinus communis]gi|223550421|gb|EEF51908.1| hypothetical protein RCOM_1508440 [Ricinus communis]
+-PSCIFISSNLHSCSdvlrlGFLIG---KPSPQCCRGIRFIKEA-ALIFGVPKACHCVRNCAnthifrrhntqklsgslkagapisNKAPDFNGDIFIQL
+QKKCRVDLGFGLDQNIPCLIIK
+>gi|9758178|dbj|BAB08563.1| unnamed protein product [Arabidopsis thaliana]
+---CNINANHLEKCRPAVIGDNPPSPiKECCELLQAAN----------LKCICrFKSVLPVL-AVYPSKVQALLSKCGLtTIP-------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+ 145 3388 * 1916 444 * * 5511 1258 0
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+ 63 4551 * 3258 159 * * 6138 1131 0
+
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+ 0 * * * * * * 6550 0 0
+
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+
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+ 19 * 6285 * * * * 6959 0 0
+
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+ 220 3134 5190 649 1465 0 * 7265 2059 1034
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+
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+
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+ 71 4371 * 0 * 5174 41 6016 1138 4776
+
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+ 50 6550 5425 0 * * 0 6263 1000 4695
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+A 49 2584 * 5304 4428 6507 5368 * 2902 3645 2718 5452 5149 3920 4895 * 4497 4176 3181 * * 49
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+ 410 4937 2220 299 2417 2055 397 7215 1204 1501
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+S 61 3062 6020 5706 5004 5302 3502 6481 5541 3194 6486 * 3543 2002 3790 5470 3862 5265 * * 5458 61
+ 858 1899 2471 561 1635 327 2300 7067 2699 3054
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+G 62 4241 * 4367 6161 * 1193 4730 * 4287 * * 3227 3429 5154 5499 3944 5394 5649 * * 62
+ 64 4529 * 1270 773 176 3124 7065 1284 2799
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+ 0 * * * * * 0 7278 0 1300
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+N 64 5510 * 2092 6293 * * * 5436 3493 4852 * 1614 6170 4595 4244 4132 5141 4562 * 5522 64
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+A 68 845 6706 * * 4522 6766 * 2831 * 3474 5628 * * 6924 * 5308 * 3370 * * 68
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+S 70 2318 * 4500 3604 * 3491 6715 * 4027 4347 5215 3851 * 2900 6016 3535 3117 5887 * * 70
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+G 76 4348 * 6077 * * 1273 3983 * 3315 * * 2497 * 4945 3717 4160 * 5882 * * 76
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+
+I 79 5398 5511 * * 3561 * 6113 2694 * 2049 5913 3830 5751 6150 4553 4271 3386 3006 * 5331 79
+ 39 5228 * 2494 282 0 * 7281 1152 1129
+
+P 80 4512 * 5631 * 3982 2985 5760 * 6262 5139 * 4721 1065 * 5250 3125 5079 * * * 80
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+
+Y 81 3888 6190 * * 1482 * * 5388 5031 3306 6338 6006 3804 * 5666 4660 * 3662 5989 2720 81
+ 87 4718 5594 633 1493 0 * 6960 1136 1440
+
+T 82 6053 * * 4988 * 4592 * 5814 3103 6612 * 4173 946 5054 * 6318 2903 * 5904 * 82
+ 28 5720 * 0 * 933 1070 6646 1023 1148
+
+I 83 4747 5677 * * 4003 * * 985 5883 4111 4417 * 6016 * * 6418 5635 2578 5700 5635 83
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+
+S 84 4721 * 2662 5221 * 4400 * 3896 5470 * * 3600 4876 * 5713 1529 2984 * * 4977 84
+ 155 5472 3657 0 * * * 6624 1024 0
+
+T 85 4308 * 4504 4127 * 5107 4245 * * 4155 * 5447 1459 4098 3831 4551 3607 3830 * * 85
+ 0 * * * * * 0 6093 0 1267
+
+S 86 4410 * 3139 * * 4167 4924 * 3219 * * 1982 5689 5846 5326 2186 4409 4933 5109 * 86
+ 0 * * * * * 0 6093 0 1267
+
+T 87 5466 * * * 2490 * 4983 2683 5109 * 3031 4434 * * * * 1784 3385 * 5137 87
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+
+D 88 * * 608 * * * * * 5728 5191 5613 2790 5043 5466 * 5276 4218 * * * 88
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+
+C 89 * 0 * * * * * * * * * * * * * * * * * * 89
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+
+S 90 * 5201 2993 4760 * * * * 4549 4907 * 2648 5584 * 5191 1171 3601 * * * 90
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+
+V 92 5153 * * * 5230 * * 995 * 2982 * * * * * * * 1658 * * 92
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+
+N 93 5115 * * * * 5007 4164 * 2024 4992 * 3232 2564 2572 * 2940 4925 * * * 93
+ 0 * * 0 * * * 5395 0 0
+
+//
+�HHsearch 1.5
+NAME f82cb3c7c161ae904b70948cfd869920
+FAM
+FILE f82cb3c7c161ae904b70948cfd869920
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:49:08 2013
+LENG 144 match states, 144 columns in multiple alignment
+FILT 138 out of 1115 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEECCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
+HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
+>ss_conf PSIPRED confidence values
+9987350688678787455419999987997999899888632234687279996357888765899999999999999746998999879999759999
+99999999098999999999987886688999999999999739
+>Consensus
+xxxpxxIxxxlyxgxxxxxxxxxxlxxxgixxvixlxxxxxxxxxxxxxxxxxxixxxdxxxxxxxxxxxxxxxxixxxxxxxxxvlvHCxxGxxRsxxx
+xxxylxxxxxxxxxxaxxxvxxxrpxxxxxxxxxxxLxxxxxxl
+>f82cb3c7c161ae904b70948cfd869920
+ASFPVEILPFLYLGCAKDSTNLDVLEEFGIKYILNVTPNLPNLFENAGEFKYKQIPISDHWSQNLSQFFPEAISFIDEARGKNCGVLVHSLAGISRSVTV
+TVAYLMQKLNLSMNDAYDIVKMKKSNISPNFNFMGQLLDFERTL
+>gi|163744309|ref|ZP_02151669.1| hypothetical protein OIHEL45_01960 [Oceanibulbus indolifex HEL-45]gi|161381127|gb|EDQ05536.1| hypothetical protein OIHEL45_01960 [Oceanibulbus indolifex HEL-45]
+-----TIDPTHNVALfTPDAKALEQAASAGMKTVINFRAADEKGGLSpdEErlvaeklGLNYLHHPVTPDTLGP-----ETVDEFRRSLDDLPQPVFLHC
+ASGK-RAGAMTLMALAADKGWDGDTALQEGKTRGID-LTEEKIGQFVKSYADR-
+>gi|335298243|ref|XP_003131846.2| PREDICTED: protein phosphatase Slingshot homolog 2, partial [Sus scrofa]
+-------------------------------------------------------------------------------eklSEHNHAFSFLC-------
+FRRLLLFSQRAAQAGSTHAISSTTPHAASTR---GYERRAWAFPVCV
+>gi|167646706|ref|YP_001684369.1| hypothetical protein Caul_2744 [Caulobacter sp. K31]gi|167349136|gb|ABZ71871.1| conserved hypothetical protein [Caulobacter sp. K31]
+---------mTLLVCPL--SQVETARTLHRPSHLVSLLSPtsaakaWPEADAN---ETCLRLAFHDVVEAregltpPDAALVARLLDFAARWDAAQ-PLL
+VHCWAGVSRStAAAFIIACQYAPERPERHIAQALRAAAPYATPNPLMVS---------
+>gi|302819053|ref|XP_002991198.1| hypothetical protein SELMODRAFT_161459 [Selaginella moellendorffii]gi|300141026|gb|EFJ07742.1| hypothetical protein SELMODRAFT_161459 [Selaginella moellendorffii]
+------VEYDLTRSGVVHQLNFPFLERLNLRTVLYLSQDEPSqqflSFLDEQGIHFrrTHQSsSTt-AAETTGSLSEAQVLSALEVILRpENYPLHVMCK
+QGRNTTGTV-IGCLRKLQRWNLTSIFE--------------------------
+>gi|257215044|emb|CAZ68050.1| protein-tyrosine phosphatase alpha [Danio rerio]
+-------------GNIRVSvEDTMILVDYTIRKFCIQQVGDvsgkKPQRLV---TQFHFTSWPDFGVPFTPIGMLKFLKKVKNCNPQyAGPIVVHCSAGV
+GRTGTFIVIDAMLDMMGAerKVDVFGFVTRIRAQ------------------
+>gi|170115154|ref|XP_001888772.1| predicted protein [Laccaria bicolor S238N-H82]gi|164636248|gb|EDR00545.1| predicted protein [Laccaria bicolor S238N-H82]
+----------------------------ta-YIVLTss--HTTPRnnvnc---------LYIPLHHERKkkGDTpy--lfTTILPSSLAFIKSRlr--LL
+TvkSVCIaipk--ndSDARDVAVGIMLVVLQLLFddhgelldgasvqlpatKQTIRTRLEWVIASVPDVNPSRTMLKRVNEF----
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
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+
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+
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+K 31 4406 5933 3790 5279 7050 4278 6042 5946 2591 * * 5550 7109 4056 2579 3656 2182 7019 6605 6908 31
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+Y 32 2913 5395 4692 7018 5864 4688 2527 6037 * 3343 5172 4963 * 5089 4065 3359 3127 4053 7019 5321 32
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+I 33 * 6711 5307 * 4499 * * 1547 6718 2994 4720 * * 5865 * * 6002 1423 * * 33
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+L 34 * 5051 * 5487 3724 * 5755 1705 6447 1692 * * * * * 6727 * 2377 * 5395 34
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+N 35 5498 4263 2188 6834 6727 * 6942 5768 * 4812 * 1864 * 6870 5022 2397 4276 4021 6790 * 35
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+V 36 5317 3313 * * 4007 * 6623 3090 6661 1239 4778 5317 * 6363 * * 6447 2840 6605 5958 36
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+T 37 3576 3324 4542 6967 6800 3478 5861 6442 5258 5426 7404 5248 6082 3722 2544 2698 3352 4872 * 6939 37
+ 54 4772 * 1902 449 * * 10032 1508 0
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+P 38 3350 5126 4388 2679 7627 4008 4821 7342 5025 6819 5901 3745 3444 5054 3935 2973 4200 4820 * 5308 38
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+N 39 5135 6791 3085 1852 * 4667 6061 * 4973 6891 7011 4357 3547 4519 4501 3419 3608 4397 6927 6368 39
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+N 42 3570 6613 3562 3061 6783 4238 5536 5491 4551 4233 6734 3851 3486 4451 3374 3660 4228 4449 6495 * 42
+ 154 3526 6106 1745 511 511 1745 9962 2551 1779
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+E 45 3990 5809 4347 3247 5025 5407 5173 4855 3774 4205 5819 5673 3008 3526 5457 4559 3498 3731 6921 4829 45
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+
+N 46 4217 * 3777 2919 6984 3718 5357 4576 3253 4373 5447 5261 4348 4095 3641 3661 5905 3506 6720 7033 46
+ 441 3501 2514 2141 371 * 0 9958 2490 2053
+
+A 47 3490 * 4566 3514 5033 3241 4407 4220 5280 4361 5627 4226 3903 6566 4413 3200 4049 4562 5387 4786 47
+ 229 5083 3089 2219 349 2102 383 9708 1260 4501
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+G 48 3444 * 5591 3027 5382 2514 3266 5612 3647 4688 6645 5918 3606 3988 5597 4912 3848 * * 5180 48
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+E 49 4564 * 3573 4315 * 1746 4616 * 4402 4820 * 3218 4357 4310 4389 3588 4939 5622 * 6448 49
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+F 50 5429 4937 5245 5062 3230 6524 4839 2151 * 2706 4531 5495 7012 5993 4246 * 5514 2809 6391 4679 50
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+K 51 3400 * 4155 3109 * * 3924 4754 3751 4647 7175 3870 * 2896 2922 3629 4045 4914 * * 51
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+Y 52 7422 5156 6541 5890 4549 6583 3266 4139 5998 3704 5897 5104 6795 7078 4262 6223 5635 3615 4723 1454 52
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+K 53 4986 5233 6051 5660 4729 * 2816 3343 4035 2131 5353 * * 4281 4413 4806 4151 4140 * 3881 53
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+Q 54 4789 5392 6119 5085 4365 4017 2499 6440 4302 6724 5279 3581 * 4650 3421 3690 4337 3757 4833 4089 54
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+I 55 4987 5199 * 6460 3469 * 4352 1979 * 2183 7010 * 6440 * * 5304 5397 2327 6094 4860 55
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+P 56 4098 * 2937 4140 7194 4029 5599 5803 5838 6618 7059 4198 1349 7818 4768 3998 4916 5875 6429 * 56
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+I 57 4308 6119 5862 * 4447 * * 2205 7032 2440 4689 * 5393 * * * 4426 2462 2906 4675 57
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+S 58 4092 * 2875 4097 5532 5386 5400 5082 4784 3564 6826 4697 2632 4447 4082 4217 3536 4558 5466 6908 58
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+D 59 5428 6655 881 3623 6753 3514 5741 5710 6875 5446 * 4215 4060 * 6676 5147 6845 * * 5959 59
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+H 60 4155 6961 3616 4502 4213 3571 3128 4232 5281 4567 5059 4003 5672 4986 5204 3371 4070 4545 4172 6454 60
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+W 61 4429 7035 3101 3736 * 2764 5450 6259 4122 5451 * 3627 3056 5032 5082 3845 3661 4762 7452 4700 61
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+S 62 2866 5952 3256 3908 5586 4013 6820 4801 4887 4284 7374 3779 3395 6134 5028 3706 4398 3060 * * 62
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+Q 63 3460 6874 3817 2792 4293 4951 4785 4972 5326 4735 7098 4505 2020 4197 5545 5924 5352 4570 * 6118 63
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+
+N 64 3448 7049 2112 3245 5996 4530 5068 6008 5497 7304 * 3913 3755 4650 4403 3152 4217 5029 * 7183 64
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+L 65 4378 7228 4028 4760 4735 5899 5661 2910 6864 1856 5535 4439 4312 6070 5369 3706 3807 4826 * 6079 65
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+S 66 3413 5567 3572 3379 3505 6360 6155 3893 5272 3463 5007 5211 3833 5307 4455 3327 4773 4672 * 4962 66
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+Q 67 3552 5749 3410 3104 5492 5446 7209 6011 3703 4526 6116 3484 3774 3196 3949 3811 4887 6008 6873 5766 67
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+F 68 3396 5397 4139 4144 5016 5508 3426 3644 4320 3843 5129 4288 5193 4670 4680 4111 4819 3837 5548 4258 68
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+P 70 4246 7157 3034 2445 6931 5841 5983 4888 3913 3584 5873 3963 3392 4902 3627 4807 5238 4959 7351 5781 70
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+E 71 3503 * 3363 2857 4394 4992 5350 4645 3312 5937 5142 4573 6255 3432 3253 4902 4181 5485 6876 5998 71
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+
+A 72 2019 4260 7033 6972 3567 6228 7109 2774 * 2545 6943 * 6035 * 6938 4472 4586 2910 7357 7504 72
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+I 73 3301 4139 6174 4923 4385 * 5358 3252 5420 2838 4770 4212 6983 6931 6032 4439 4707 2339 * 4306 73
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+S 74 2828 * 2996 2672 7138 5658 6793 7225 2986 5021 5330 3849 * 3827 3026 4392 5171 * * 6120 74
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+
+K 82 3808 5583 4300 2935 * 4861 6393 5086 3375 4252 5852 2911 5409 3755 3370 3365 4305 * * 6726 82
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+
+N 83 4478 * 3535 3916 * 1587 5124 6436 4052 * 6784 2658 3999 5363 4882 4304 5595 * * 6686 83
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+C 84 4757 5977 5211 3316 7005 1981 4675 * 2444 5567 7404 5930 4353 4692 3189 4504 * 5785 * 4937 84
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+G 85 3959 6103 5360 * * 4451 7058 6063 2724 7087 * 3578 1987 5759 2649 3928 4323 4629 * * 85
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+V 86 4071 5087 * * 5235 * * 2344 * 2991 7147 * 5565 * * 7066 3956 1142 * 6842 86
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+V 88 4030 6685 6067 * 4383 * 6850 1944 * 3926 5043 * * 5983 * * 5649 1102 * * 88
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+G 93 5455 6791 6851 7033 * 227 * * 6648 7172 * 5582 * * 6747 4306 * * * * 93
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+R 96 5027 * * 6929 6978 6727 5766 5362 6535 4814 * 7353 5896 * 375 7191 5978 6856 5096 * 96
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+V 98 2612 5295 * * 5151 1387 * 6029 * 5250 * 6894 2957 * * 4221 4448 3380 5753 7006 98
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+
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+
+T 101 2455 3498 * 6682 5279 4639 * 2614 * 3448 5405 6879 * * 6157 4820 3353 2309 5853 * 101
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+V 102 1798 3725 * * 6033 5816 * 2688 * 2612 3909 * * * * 4149 3967 3952 6031 5772 102
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+A 103 1360 3577 * 5365 6487 4368 6804 4829 * 2591 4901 * * 5239 4673 3974 7052 4777 5869 6826 103
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+Y 104 4753 5218 6510 * 4109 6417 5201 4208 * 3331 5856 * * 6824 6774 5439 4404 4171 4229 1119 104
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+L 105 5410 4987 6627 * 4080 6421 7023 3512 * 1243 3203 4781 * 5237 4680 5693 5652 3839 * 5231 105
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+N 110 4885 7078 4095 4690 5172 1389 5690 6199 3618 5318 7368 2774 * 4890 3691 5356 * 6981 6987 6834 110
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+ 56 4705 * 3333 151 * 0 10076 1461 1000
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+M 113 2584 6863 5338 4458 4086 5486 6889 5599 4792 2205 4776 * 3249 5726 3867 5011 5858 3678 5813 5796 113
+ 0 * * * * * 0 10076 0 1000
+
+N 114 4243 * 2815 2046 6982 5364 6003 5076 3950 4861 7262 4108 4125 4247 3892 4018 6071 4711 7023 5508 114
+ 14 6682 * 0 * * 0 10076 1063 1000
+
+D 115 3413 * 2532 2137 * 6219 7028 5381 3818 5358 * 5193 6579 3051 4190 4622 3608 6086 * 6066 115
+ 0 * * * * * 0 10076 0 1000
+
+A 116 822 7279 * 6401 * 5278 6738 3709 * 4430 6224 * 6455 * 5779 3792 4510 3475 6785 * 116
+ 0 * * * * 0 * 10076 0 1000
+
+Y 117 4191 7192 7007 5002 3418 * 6875 2743 7181 1731 4516 * * 6403 4648 4985 * 3094 5764 3691 117
+ 36 5346 * 0 * * * 10075 1294 0
+
+D 118 2542 6625 3104 2501 6830 6603 4695 * 3054 5045 * 4949 * 3863 3915 4427 4558 5783 6874 4885 118
+ 27 6660 6813 3322 152 * * 10075 1038 0
+
+I 119 4298 * 5697 3565 3318 * 3401 3716 4815 2494 4629 5023 * 4885 5326 4807 6166 4636 * 2820 119
+ 0 * * * * * 0 9945 0 1178
+
+V 120 4428 5289 * * 3772 5224 * 2600 * 1993 5060 * * * 6923 6373 5904 1626 * 5581 120
+ 0 * * * * * 0 9945 0 1178
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+K 121 4339 5605 * 3737 6762 5732 5488 * 2482 4031 5104 5276 * 3212 1579 5594 4432 * * * 121
+ 0 * * * * 1265 776 9894 0 1178
+
+M 122 3353 6796 4531 2872 6476 4393 * 5318 3088 5136 5387 4420 6838 3662 3628 2828 4360 4836 * 5675 122
+ 16 6516 * 1000 1000 * 0 9900 1023 1038
+
+K 123 2814 6638 6234 * 4257 5633 4455 3448 3344 3303 * 5727 6321 4000 2907 5730 5285 3145 * 4638 123
+ 57 5823 5546 1435 666 * 0 9864 1138 1038
+
+K 124 5003 6620 * 5721 6467 4238 3560 6573 4265 5818 6787 5481 6274 5665 798 6518 6730 5452 * 5165 124
+ 81 5053 5337 3111 177 1236 797 9817 1322 1412
+
+S 125 4112 * 5772 4748 3554 5058 6434 6835 5139 4926 * 6143 1073 5647 5726 3419 5146 5668 6864 6440 125
+ 107 * 3809 * * 1366 708 9824 0 1610
+
+N 126 5036 3553 3489 4996 3873 3411 4900 6312 5751 4743 * 3207 5474 3134 3829 4346 5173 4865 6300 4042 126
+ 74 4696 6472 1181 839 445 1913 9795 1370 2367
+
+I 127 2581 5557 * * 4372 5579 5290 2520 6165 2969 5496 * 6368 5482 4971 4520 4552 2198 * 6906 127
+ 53 4788 * 1555 600 0 * 9735 1362 1428
+
+S 128 3711 5531 4355 3762 * 6791 4946 3931 3824 3496 6384 3451 * 3739 3326 3051 3946 4335 * * 128
+ 31 6477 6676 0 * * * 9723 1016 0
+
+P 129 3875 6488 * 3812 5565 6239 * 3228 4672 3260 5392 6632 1508 5044 5607 5570 5324 3750 * 6954 129
+ 34 5408 * 0 * * 0 9705 1190 1160
+
+N 130 4223 * 4387 4942 * 5235 3932 5449 3456 6609 * 1594 4929 * 3564 3064 3870 6239 * * 130
+ 0 * * * * * 0 9705 0 1160
+
+F 131 3625 * 3748 2787 6766 4912 6199 3976 4095 3399 6468 * 2453 4745 4041 5090 4645 5006 * 4865 131
+ 0 * * * * 0 * 9628 0 1160
+
+N 132 5801 6291 4794 4172 6332 2062 4415 * 4217 4382 * 3979 4928 3821 3586 3016 5001 5277 4764 6721 132
+ 36 * 5333 * * * * 9663 0 0
+
+F 133 4615 6097 * * 1658 6406 4122 4959 * 2907 3695 4720 6178 3200 6002 6504 6282 4704 6206 3969 133
+ 17 * 6453 * * 1124 886 9633 0 1157
+
+M 134 5245 * * 4113 4835 6321 6394 3591 4059 2235 3310 * * 4254 3133 6495 6193 3475 4603 3681 134
+ 0 * * * * 845 1174 9603 0 1148
+
+G 135 3886 * 4025 2934 6359 4292 5538 5440 2848 5419 6403 3739 5135 3648 2541 6094 4705 * * 4312 135
+ 19 6273 * 2000 415 * 0 9624 1016 1000
+
+Q 136 3899 * 5873 4690 3882 5233 5382 6146 4227 4763 5212 5031 * 1888 4708 3474 4776 4215 4172 4248 136
+ 65 4504 * 2027 406 * 0 9317 1397 1000
+
+L 137 4426 * * 4673 6253 * * 4187 * 527 * 5859 * * 5941 * * 3073 * * 137
+ 0 * * * * 0 * 9271 0 1000
+
+L 138 3153 * 4354 2917 5985 6157 6240 6467 4159 2975 4514 6330 * 2891 3093 4553 * 4249 5320 4630 138
+ 28 5711 * 0 * * * 9307 1054 0
+
+D 139 3004 * 3042 2765 5753 5201 * 4726 3242 4614 * 4330 * 3737 3737 3544 4032 6028 * 6069 139
+ 0 * * * * * * 8977 0 0
+
+F 140 5787 6288 * * 2230 * * 4772 * 3004 5768 5665 5494 * * * * 5142 2439 1636 140
+ 0 * * * * * * 8939 0 0
+
+E 141 3472 * 3164 1505 * 4220 * 5530 5365 4723 5143 4568 4439 4740 4161 4617 4726 5646 * * 141
+ 0 * * * * * * 8689 0 0
+
+R 142 3883 * 3761 3786 * * * * 3216 4382 * 3224 * 2748 2295 3240 5378 4616 * * 142
+ 0 * * * * * * 8021 0 0
+
+T 143 5017 5360 4770 4062 * * 3113 3019 2693 4950 5251 5247 * 3718 3441 2723 4319 * * * 143
+ 0 * * * * * * 7479 0 0
+
+L 144 * * * * * * * 4246 * 288 * * * * * * 4389 3630 * * 144
+ 0 * * 0 * * * 6413 0 0
+
+//
+�HHsearch 1.5
+NAME f9eb38ef6943149426b564b15c282045
+FAM
+FILE f9eb38ef6943149426b564b15c282045
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:13:29 2013
+LENG 213 match states, 213 columns in multiple alignment
+FILT 215 out of 1347 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.0
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECC
+CCCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCCC
+CEEEEEEEEECCC
+>ss_conf PSIPRED confidence values
+9807999999999998605655667753477747999999999972888774167877543322258989999999999848986785320606899604
+8655579999963657897389998797499998613441389530189999999999999998678869999999856322432122463455301268
+5899999987499
+>Consensus
+xNxMxVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxllxxxxlcnxaxxxxxxxxxxxxxxxxxGxptExALlxxxxxxxxxxxxxxxxxxxxxxxpF
+xsxrKxmxxvxxxxxxxxxxxxxxxKGApexilxxcxxxxxxgxxxxlxxxxxxxixxxxxxxaxxGlRvLaxAxkxxxxxxxxxxxxxxxxxxxxxexx
+LxflGlvgixDPp
+>f9eb38ef6943149426b564b15c282045
+QNPMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIEVCCGSVMEMREKYTKIVEIPF
+NSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQFDTDEVNFPVDN
+LCFVGLISMIDPP
+>gi|326426562|gb|EGD72132.1| calcium-transporting ATPase type 2C member 1 [Salpingoeca sp. ATCC 50818]
+ANKMVAKVVYDaaHDIHAQVT------GSGYQFSGrvmlgdrpvsintpaattvaaaaaaTANTSTLPMITITPTATAPA-SAP-------SPSSSAAAA
+AVKTASS-AV-EGAAVAPFASVIEAAVLCNNA--EVhTDGTlIG--QptE-VmarLcvclcvcvcvcvcvcvcvcvcvcVCVCVCVCVRVAMCvaVCPMC
+DGRCCSLFATLSPLLTTiTAAAITNTA-----------T-D------------------VFIFTpGLVAIADQP
+>gi|288941070|ref|YP_003443310.1| HAD superfamily ATPase [Allochromatium vinosum DSM 180]gi|288896442|gb|ADC62278.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC [Allochromatium vinosum DSM 180]
+LNRLAISDLVDpVSGAsmdtpd--------------GRRG-----LLEAALIASELRPAtsqEAGAPCW--S----GDPLDVALAAYHAEQIGPPERLLA
+ETRR--HFPFDLARRREAGVFAEGD--E--ILFAIKGAWESLRPLIGQIQDGAGQHHVADDQTLAVCDRAVhRLSSQGRRVIAVAARRLERLP-----DP
+KApeESL---ERGLVLRGLIALDDPI
+>gi|255581776|ref|XP_002531689.1| cation-transporting atpase plant, putative [Ricinus communis]gi|223528665|gb|EEF30680.1| cation-transporting atpase plant, putative [Ricinus communis]
+CNQMEVNE-fFIGEENMNDdeVC-----------ETSpvVLEALGQGIGAStlvT---------GGsvrPI-----------------ddllaawAKsRW
+GANMELSDQ-cFSV-lDHGILESNKNCSRVVIKKNG--DDegILHLHLKGDASTILNFCSHYYNtKWEVH-aIKDQRR-d-FEQVIENMESRGLTAIAYA
+CKQME-T----------------tksra--EhLHLLALVG-l--K-
+>gi|239630295|ref|ZP_04673326.1| cadmium-/manganese-transporting P-type ATPase [Lactobacillus paracasei subsp. paracasei 8700:2]gi|239527907|gb|EEQ66908.1| cadmium-/manganese-transporting P-type ATPase [Lactobacillus paracasei subsp. paracasei 8700:2]
+------------------------------------ETVRAYSAFACDQQ---------------HPSVIDQAILTFTSNNHVE------A-TLSNFTPF
+TAETGYASATITI----ADRLLKVRLGSLKVLQSRDP-----------------ESPKLP-PLALDAGRSVAVSIN-----------------------E
+-HLVGVYILEDTI
+>gi|255565063|ref|XP_002523524.1| H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]gi|223537231|gb|EEF38863.1| H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
+-----------------------------------------------------------------------------------------DADKETVVLLA
+ARASRTENQDAIDasivgmlS---DPKSAQLSLTLTTMVTGTDAA----------KGHLSKKPHEIIDNFADRGLRSLGVARQTIPEKT--------KES
+---AGTPWEFVGLLPLFDPP
+>gi|340054218|emb|CCC48513.1| putative phospholipid-translocating P-type ATPase (flippase), fragment [Trypanosoma vivax Y486]
+QNVMELLHVTIGDKRFSLHEC---EGEasKVDENEEDVLQFGRVLSLCNTVEVASDPardtDrlgAQPYGEhsGTvvyQAASPDEAALCCGAGKLSVrlt
+HReqtratlmvKGIVESWFIHYVFPFSSELKTMGIVVEREG--TGLIYYFVKGADDRIAEMSTVEsrddvSTNGVGKAGDTETFEFIGSELKHYATRGLR
+TLLIAQKRLSRDDLNHflsQiraAEllLTnrQEKLgeirRDMESGVRILGATAIEDK-
+>gi|340504230|gb|EGR30692.1| hypothetical protein IMG5_125530 [Ichthyophthirius multifiliis]
+----------------------------------------------------------------------------------------------YKVNQN
+NYEVMEGKKFRELIGGiaYDNPYAQNIEDRGEAKIFNFDIFKkIVKELKILARSTPDDKYMLVTGLIQ--ITNDAPALKKADVG-FAMGiagTEVAKEAA
+GIILLDDNFVSIVtackygrNIYDSI
+>gi|154286582|ref|XP_001544086.1| cation-transporting ATPase 4 [Ajellomyces capsulatus NAm1]gi|150407727|gb|EDN03268.1| cation-transporting ATPase 4 [Ajellomyces capsulatus NAm1]
+--------------------------------------------------------------------------------------------AIFCTEPF
+RIPYAGRIDIACFDK--T-GTLTG--------EDLLVD----------------------------GIAGLTLGHASAKTDKhGAhtDITPVEKVA---N
+ETTLVLA---------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+Q 1 4415 5646 * 2244 * 5792 * 7130 2529 4521 4232 * * 1991 4879 4930 3607 7248 * 5658 1
+ 0 * * * * * * 9141 0 0
+
+N 2 * * * * * 2978 * * 4642 * * 374 5036 * 5824 7277 7149 * * * 2
+ 16 7035 8140 3585 126 * * 9171 1025 0
+
+P 3 5295 7072 6245 2800 * * 4355 5021 1907 5142 5975 4929 6504 3131 2578 4975 5163 5250 * 6920 3
+ 0 * * * * * 0 9170 0 1000
+
+M 4 6035 * * * 5323 * * 5107 7242 3050 399 * 6217 5809 * 7639 * * 6827 * 4
+ 19 7242 7313 2322 322 * 0 9170 1002 1000
+
+T 5 5040 7466 7757 3883 6082 6574 5720 4713 3598 * * 5849 * 4475 3573 2765 1632 3428 * 5824 5
+ 5 * 8074 * * 812 1216 9169 0 1087
+
+V 6 3842 7523 * * 3595 * * 3730 * 2903 7260 * 5807 * * * 6239 748 * * 6
+ 0 * * 2000 415 * 0 9164 1000 1087
+
+A 7 3420 7424 5397 4876 7523 4955 5145 6087 3112 7010 6482 5440 * 6050 3208 2859 2723 2380 * * 7
+ 0 * * * * * 0 9164 0 1087
+
+H 8 3783 5681 3141 2674 * 4936 4325 6519 2698 * 7116 4395 * 3665 3064 4155 4740 4769 * 7183 8
+ 47 6544 5553 0 * * 0 9164 1092 1087
+
+M 9 4375 3836 7432 * 3558 4032 * 2143 * 2121 4155 * 5570 * * 7417 * 2631 6286 5934 9
+ 18 6325 * 404 2035 1491 634 9131 1380 1485
+
+W 10 4283 4624 6419 * 2674 7131 7353 3807 * 3886 7415 5833 7482 * 5949 4313 4807 2943 2319 2992 10
+ 54 6066 5535 473 1839 * 0 9147 1128 1284
+
+F 11 3521 6080 5053 * 3492 5138 6549 2505 * 2927 6555 5279 5872 7699 * 4433 2726 3131 * 4000 11
+ 103 4109 6491 656 1453 1500 630 9122 1819 1600
+
+D 12 3395 * 3498 3725 4651 2329 5312 5439 5009 4249 7781 3131 3697 6162 * 3357 6439 5608 6761 5534 12
+ 65 5454 5565 1497 631 * 0 9101 1241 1651
+
+N 13 5347 * 2340 3159 7159 1719 7169 * 4510 4390 6799 3774 5463 5440 7573 3648 5341 5690 * * 13
+ 75 5724 4981 1313 743 3407 143 9077 1162 1932
+
+Q 14 4083 7143 4687 3286 6695 3090 5271 4961 3153 6284 * 3841 * 3219 3422 3575 3794 4528 * 6335 14
+ 52 * 4809 3170 170 2933 203 9073 1000 2245
+
+I 15 4571 * 4752 4169 5181 6431 4881 3319 3999 3215 5929 4159 5634 4483 3655 3781 3461 3529 6153 4613 15
+ 96 4916 5011 2088 387 3941 97 9017 1368 2567
+
+H 16 4556 6235 6304 4281 2632 * 5036 3491 4849 3517 5040 5522 7167 4771 6815 6301 6380 3816 5289 1992 16
+ 126 3802 6394 1826 478 2384 307 8977 1834 3014
+
+E 17 3824 * 3282 3444 5785 3405 5188 4796 2970 4804 * 4230 5092 4011 4634 3672 3635 6229 * 4713 17
+ 95 4730 5266 732 1330 3723 114 8995 1387 2782
+
+A 18 3343 6973 4597 3973 4608 3843 * 3738 4999 3254 * 4113 4832 7397 * 3440 4782 2202 * 5493 18
+ 344 3845 2813 1742 513 3780 109 8957 1797 3021
+
+D 19 3700 * 2778 3106 * 4134 6574 * 3244 6261 6092 3524 5381 4085 4300 3614 2904 5990 * 6826 19
+ 151 4428 4239 3585 126 3039 187 8840 1477 4219
+
+T 20 4400 7105 3439 3519 5581 1979 5265 5030 4310 3953 5048 5031 5338 4071 4400 4366 4466 5938 * 5849 20
+ 142 5997 3681 529 1703 3947 97 8758 1078 4323
+
+T 21 3283 6542 5560 3020 4454 4587 * 5700 3900 3300 * 4546 5287 * 4824 2794 2988 4120 * 4806 21
+ 111 5054 4517 3850 104 4454 67 8692 1341 4730
+
+E 22 4248 5567 3338 3255 6696 2739 5632 * 3685 5472 6122 4582 3781 4848 4202 3863 4031 3869 * 5233 22
+ 443 2428 3667 912 1094 5606 30 8639 2575 4858
+
+N 23 4387 * 3051 3685 4884 5743 5061 5420 3962 5665 5594 4751 3926 3947 4646 3742 3520 4069 * 3130 23
+ 283 3093 4035 1642 557 5260 38 8538 1953 5251
+
+Q 24 3551 * 4054 3867 6424 5498 4560 4600 3325 4697 4622 3980 3342 4029 4945 4132 3034 4510 * 6539 24
+ 300 2745 4691 1758 506 2233 345 8437 2174 5479
+
+S 25 5716 5937 3488 2875 * 4525 3972 6052 3365 3880 6756 4356 2922 4147 6552 4139 3538 4546 * 6752 25
+ 319 3112 3595 1091 914 3886 101 8520 2127 4965
+
+G 26 4893 * 3839 4842 7016 1207 7112 5204 4276 4707 6100 4048 5166 5326 6554 4142 4285 4585 * 6875 26
+ 179 3595 4870 1944 434 3247 161 8507 1722 5223
+
+V 27 3794 * 4710 2529 6922 4847 5226 4210 3260 4246 * 4210 3903 3954 4170 2858 5037 5252 * * 27
+ 154 3701 5362 3808 107 2983 195 8626 1809 5120
+
+S 28 4074 * 3454 3610 4840 3923 5332 3031 4244 4896 7770 3838 4027 3951 6495 2762 4591 5338 * 6979 28
+ 96 4631 5368 708 1366 3519 132 8714 1341 4864
+
+F 29 4729 * 5015 5303 3650 5957 4889 4079 3984 2992 4974 5007 4389 5654 6157 4539 4319 4259 5720 2186 29
+ 532 2119 3680 2957 199 1936 437 8742 3090 4749
+
+D 30 2875 * 2921 2959 6983 3511 5881 5013 4618 5715 * 3223 4696 3806 4902 3244 7043 5130 * 7061 30
+ 173 3953 4363 1758 506 2370 310 8818 1720 4527
+
+K 31 4024 6943 5424 3909 4537 5411 6626 3624 3502 3194 7295 5518 2573 4138 5060 3776 4015 3893 * * 31
+ 378 2503 4215 2030 405 1623 567 8816 2923 4305
+
+T 32 3907 * 3155 3785 6089 4400 5579 5024 4650 3494 5914 3925 3921 3650 4250 2840 4371 5511 * 5998 32
+ 196 3958 3995 2626 255 1678 541 8900 1765 3870
+
+S 33 4063 * 2789 3754 * 2704 5271 7010 4277 4985 7416 3351 3893 4521 4467 3403 4275 6018 6840 5588 33
+ 236 2911 5793 3293 155 1435 666 8929 2689 3600
+
+A 34 3006 6903 3691 2270 7475 4373 5045 5615 3225 7157 * 5137 3799 3838 7465 3649 3766 5604 * 6135 34
+ 113 3939 6639 1994 417 1506 626 9039 1753 3220
+
+T 35 3425 * 3285 3640 * 4447 5437 4784 4413 3642 6376 4008 3543 5247 4792 2930 3785 4409 * 5746 35
+ 91 4191 7232 2635 253 2540 272 9105 1716 2653
+
+W 36 4012 * 6581 4126 3129 7423 5955 3463 5272 1894 6211 5094 5614 7423 4573 4030 5058 3340 5749 5121 36
+ 77 5038 5529 3918 99 1725 520 9196 1510 2449
+
+F 37 4455 7318 3664 2946 7557 4526 5135 4759 3393 3590 7318 5358 4578 3566 3047 4102 4239 4737 6936 6334 37
+ 45 5367 7311 1930 439 1680 540 9069 1251 2379
+
+A 38 3730 7212 3356 2456 6416 6210 6096 3826 4596 2759 4542 4891 * 3653 3781 4455 5371 4856 7524 * 38
+ 22 6659 7590 945 1058 1157 858 9059 1177 2042
+
+L 39 4460 6711 * * 3070 7544 * 3047 6485 1070 4690 * 7524 * * 6394 4497 3396 * 5881 39
+ 15 7736 7500 0 * 2713 239 9101 1002 1629
+
+S 40 3766 5310 * 6525 4543 5312 6502 3443 6788 1352 4289 7535 6214 6200 4475 4997 5433 3395 6283 5183 40
+ 24 7273 6641 0 * 1257 782 9115 1028 1617
+
+R 41 3599 6648 4638 2844 6206 5233 5659 5332 3391 3065 5339 4366 6330 3780 3052 5627 3482 5719 7494 6038 41
+ 47 4951 * 1820 481 659 1448 9134 1493 1514
+
+I 42 2045 3788 * * 5557 3036 6000 2920 * 4249 6412 4200 * 6239 7477 3408 5377 3104 7651 5852 42
+ 53 5436 6294 1958 429 * 0 9158 1362 1134
+
+A 43 2004 4529 * * 6168 3159 * 2555 * 2748 3800 6589 * * * 3061 5598 4835 * 7716 43
+ 8 * 7468 * * * 0 9119 0 1599
+
+G 44 2078 4350 7657 7953 5557 3527 7552 4129 * 3749 5144 5631 * 7250 7564 2826 3996 2608 7663 5201 44
+ 20 6214 * 4551 63 1555 600 9110 1136 1695
+
+L 45 4872 5489 7324 5532 5318 5781 7486 3047 6043 1033 4732 6387 * 6281 7656 5030 4866 3621 6942 5611 45
+ 38 * 5250 5129 42 2100 383 9136 1033 1435
+
+C 46 2606 1018 7356 7192 * * 7311 6754 7611 * * 2408 * * 7449 3744 4902 7365 * * 46
+ 44 6492 5703 999 1001 * 0 9135 1118 1786
+
+N 47 7425 4372 7540 5843 * * 3348 7387 7275 6614 7414 1297 5787 5565 * 2208 2903 * * * 47
+ 65 6532 4918 1437 665 1250 787 9097 1261 2104
+
+R 48 4726 * 2536 3514 * 5819 7475 * 4522 6567 6713 2315 6439 5066 5334 2804 2438 6155 * 7257 48
+ 23 7613 6535 1000 1000 2086 388 9082 1000 2167
+
+A 49 1352 4804 5521 7679 5916 4522 6637 5091 6699 4273 8085 7331 6155 6102 6432 2512 4472 3264 * 6604 49
+ 95 6388 4264 486 1807 3682 117 9105 1116 2047
+
+V 50 4443 6496 5456 3539 5967 5649 5557 4090 3987 5413 4894 3985 6585 3516 3537 3330 3080 3471 * 4534 50
+ 179 3766 4534 2629 254 4189 81 8998 1972 2947
+
+F 51 4277 7603 7072 5564 2869 * * 2455 4862 2402 5705 5540 4638 5519 5441 4416 6293 2987 6301 4385 51
+ 231 3694 3817 1474 644 4866 50 8937 2112 3474
+
+Q 52 4554 6148 3369 2525 5069 6555 6519 4128 3326 4792 7243 4570 5518 3936 4580 4002 4694 3044 * 5136 52
+ 172 4732 3740 586 1582 3080 182 8873 1522 4213
+
+A 53 4221 * 3607 3186 4976 5257 4823 5832 3748 5030 * 3837 3280 4005 4632 3580 3802 4041 7237 4635 53
+ 401 4162 2418 2248 341 4296 75 8807 1642 4573
+
+N 54 4654 6179 2201 3101 * 2761 7055 4958 4474 5706 * 3489 4161 4783 5176 3739 4425 5501 * 6880 54
+ 112 4524 4992 3018 190 1332 730 8759 1386 5828
+
+Q 55 4691 * 3253 3164 7389 3432 * 6481 3763 6277 6518 2855 4664 3155 4391 3417 3756 5761 7135 7223 55
+ 175 3773 4599 2378 308 1859 465 8973 1860 4540
+
+E 56 4023 * 3039 2832 7388 2520 4601 4996 3883 5207 5746 3346 6438 4935 4496 4296 4418 5778 * 7082 56
+ 433 3386 2612 2391 305 2755 231 9053 2319 4123
+
+N 57 3824 * 3096 3267 6291 2342 5121 * 3713 5299 * 3391 5334 4042 4436 4416 4190 5051 6738 * 57
+ 628 5435 1601 1002 998 2092 386 9020 1191 5256
+
+L 58 4981 6652 3318 4996 4756 2581 6766 4265 3573 3975 5368 4475 5540 4080 4037 3963 4355 4003 6654 5816 58
+ 708 4006 1618 4104 86 4286 76 8757 1478 6502
+
+P 59 5362 * 3875 3832 * 3915 6066 4279 3482 4515 * 5151 1510 5078 4908 4353 5163 * 5257 5266 59
+ 783 5518 1333 4416 69 5917 24 8432 1108 7422
+
+I 60 4488 * 3986 4143 5393 5253 5534 2983 4435 4631 * 5315 3881 * 3773 4275 4962 2643 * 2825 60
+ 201 4637 3474 635 1489 3817 106 7575 1079 8070
+
+L 61 3753 * 4199 4761 5664 3576 3817 4894 4209 3206 4030 4825 3907 * * 2603 4736 4001 4786 * 61
+ 153 3595 5804 3452 138 1655 551 7615 1299 7945
+
+K 62 3858 * 3513 2664 * 4542 5634 4320 3285 4718 6616 5021 5741 2762 4066 3907 4992 4595 * 5285 62
+ 160 3938 4651 1266 776 1608 574 8316 1485 6725
+
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+ 358 2521 4448 1253 785 2840 217 8628 2800 6235
+
+D 190 4253 7145 2919 2781 7033 4025 7343 5430 3925 5194 7043 3546 5029 5186 5364 2751 2847 6943 * * 190
+ 183 3337 5619 1433 667 2131 374 8682 2048 5982
+
+T 191 4889 6175 4122 3801 7063 4442 4987 4442 3427 5616 5163 4810 5110 3508 2248 4254 4765 3757 7338 5759 191
+ 167 3966 4466 1459 652 2855 215 8824 1918 5316
+
+D 192 4402 * 2279 1803 * 5278 6376 5253 4211 6303 7323 4030 6293 4162 4815 3120 5255 6448 7614 * 192
+ 203 3570 4408 2105 382 2523 276 8810 2036 5199
+
+E 193 3662 6369 2524 2944 4445 6018 5326 5086 4228 4207 * 3721 4631 4128 5295 3880 3736 5444 7179 6609 193
+ 525 3293 2300 1924 441 3795 108 8810 2280 5174
+
+V 194 3095 6805 4493 2982 5429 6969 6802 4079 6064 2670 * 4094 5917 4772 4340 4139 6033 3515 5684 3450 194
+ 392 4572 2351 1763 504 2638 253 8722 1366 6369
+
+N 195 4422 * 2633 2216 * 4414 6691 6981 4633 4114 * 2874 4668 4486 5294 3552 3893 5973 * * 195
+ 184 * 3060 3170 170 4645 59 8652 1000 6686
+
+F 196 3673 7238 3697 3402 2408 5124 6814 3760 3994 3999 5051 * * 4252 5367 4236 5780 3734 6657 4185 196
+ 197 5774 3192 1000 1000 1421 675 8564 1083 6985
+
+P 197 3937 5948 5359 5438 6020 5931 6609 2785 6090 2770 4184 4674 3384 4078 7272 4023 4747 2923 * 4779 197
+ 180 3367 5626 2759 231 1243 792 8740 2358 5948
+
+V 198 5902 6770 3906 1194 6377 4946 7231 5643 5102 3561 7170 4819 4594 6532 5535 4850 4326 4447 * 4684 198
+ 51 5441 6377 1410 681 1096 910 9038 1347 4443
+
+D 199 4679 6051 3954 3791 * 3837 5287 6474 3048 5396 * 3219 6805 3163 3944 2567 4377 5069 7672 6262 199
+ 32 5950 7375 2019 409 360 2178 9085 1221 3149
+
+N 200 7587 * 1582 3864 6657 2736 5275 * 4407 * * 2505 4420 5016 * 4077 5002 6594 7796 * 200
+ 99 4432 5624 1903 449 463 1864 9235 1743 1583
+
+L 201 7397 7436 6498 7264 3449 6350 7386 4740 * 722 3382 * 6392 6450 * * 6217 5426 5211 4864 201
+ 22 6063 * 1293 757 204 2922 9226 1237 1514
+
+C 202 5102 4609 4535 4335 * 6670 6025 2834 5076 6582 7309 4929 * 5183 4322 5437 1777 2410 7133 7635 202
+ 7 7616 * 3322 152 * 0 9295 1000 1000
+
+F 203 6670 7148 * * 1253 7791 7983 3708 * 1575 5468 * 6166 * * * * 4858 5165 4508 203
+ 7 7710 * 2867 213 0 * 9295 1121 1000
+
+V 204 3875 4452 7762 5718 6590 6788 8024 2628 6411 1545 5766 * * 5325 7398 5609 5591 2188 * 6254 204
+ 15 6636 * 0 * * * 9301 1093 0
+
+G 205 3102 5422 * * * 306 * * * * * 7489 * * * 4457 * * * * 205
+ 0 * * * * * * 9287 0 0
+
+L 206 4459 5173 * * 3037 5872 * 2730 * 1263 3901 * * 6882 * 6744 5675 3506 8232 5323 206
+ 0 * * * * * * 9287 0 0
+
+I 207 3836 5001 * * 3844 5757 * 2151 * 2806 5665 * * 7632 * 5198 3377 1830 * 6259 207
+ 16 6511 * 2807 222 * * 9287 1137 0
+
+S 208 1803 4752 * 7588 7136 1220 * 5008 7355 6368 * 5942 5878 * 7439 3710 6218 4310 * 7345 208
+ 13 * 6759 * * * * 9320 0 0
+
+M 209 6232 7433 * * 2738 * * 1444 * 2197 3112 7887 * 7216 * 6721 5736 3533 * 7943 209
+ 0 * * 584 1587 * 0 9311 1117 1117
+
+I 210 4897 * 5266 2373 5570 8023 7332 3590 4454 3867 3591 5774 7122 3463 3346 3932 6232 3942 * 3685 210
+ 0 * * * * 1004 996 9311 0 1117
+
+D 211 * 5344 240 4391 * 6608 6837 * * * * 4704 * * 7105 5922 * * * * 211
+ 0 * * * * 0 * 9227 0 1013
+
+P 212 5810 * 4572 4820 * * 6534 5485 5133 6430 * 6537 483 4252 7158 4611 * * * 7638 212
+ 0 * * * * * * 9132 0 0
+
+P 213 5071 * * 6708 * * 7202 3119 * 2954 * * 717 * * 6958 * 3422 * * 213
+ 0 * * 0 * * * 8623 0 0
+
+//
+�HHsearch 1.5
+NAME fb5bff21f8955d17ec9c9ef42e3fe2a1
+FAM
+FILE fb5bff21f8955d17ec9c9ef42e3fe2a1
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:06:41 2013
+LENG 104 match states, 104 columns in multiple alignment
+FILT 27 out of 29 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 1.6
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCHHHHCCCCHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCC
+CCCC
+>ss_conf PSIPRED confidence values
+9877660477777270012111578884447998861288899984110010078999999988629989981333004875151999999999199930
+2119
+>Consensus
+xxWngxyixPYaEhGkKseqVKKitvsIPxkVLkiLTdERTRRQvnnLRHATNSELLCEAFLHAfTGQPLPxDxDlxKdxxdxiPxxxkxxmxxxGixxx
+xxxx
+>fb5bff21f8955d17ec9c9ef42e3fe2a1
+AEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRKVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPE
+TWEY
+>gi|33151854|ref|NP_873207.1| transcriptional repressor protein MetJ [Haemophilus ducreyi 35000HP]gi|41017323|sp|Q7VN90.1|METJ_HAEDU RecName: Full=Met repressor; AltName: Full=Met regulon regulatory protein metJgi|33148075|gb|AAP95596.1| met repressor [Haemophilus ducreyi 35000HP]
+INWSGKYISPYAEHGKKSKQVKKITVSIPIKVLEILTNERTRRQINNLRHATNSELLCEAFLHAFTGQPLPADEDLMKERYDEIPEKAKSRMRDLGIDPD
+EWQY
+>gi|336317341|ref|ZP_08572197.1| transcriptional regulator of met regulon [Rheinheimera sp. A13L]gi|335878274|gb|EGM76217.1| transcriptional regulator of met regulon [Rheinheimera sp. A13L]
+AKWNGEYVHPYAEHGKKSEQVKKITVSIPLNVLKVLTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPADEDLRKDNPHQIPVEVRNILTSMGKPIP
+VIQeA
+>gi|332142907|ref|YP_004428645.1| transcriptional repressor protein MetJ [Alteromonas macleodii str. 'Deep ecotype']gi|332143048|ref|YP_004428786.1| transcriptional repressor protein MetJ [Alteromonas macleodii str. 'Deep ecotype']gi|327552929|gb|AEA99647.1| transcriptional repressor protein MetJ [Alteromonas macleodii str. 'Deep ecotype']gi|327553070|gb|AEA99788.1| transcriptional repressor protein MetJ [Alteromonas macleodii str. 'Deep ecotype']
+AEWNGKYIHPYAEHGKKSEQVKKVTVSIPINVLKALTDERTRRQINNLRHATNSELLCEAFLHAFTGQPLPNDDDLRKDNPNRVPAEARRIMEEMGIDPS
+FENnV
+>gi|71280244|ref|YP_267212.1| transcriptional repressor protein MetJ [Colwellia psychrerythraea 34H]gi|71145984|gb|AAZ26457.1| met repressor [Colwellia psychrerythraea 34H]
+AQWNEEYINPYAEHGKKSEQVKKITVSIPLRVLKVLTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPDDEDLAKDNNEKLPASVRRLLEAKGItDF
+SAYEvE
+>gi|336123089|ref|YP_004565137.1| Met repressor [Vibrio anguillarum 775]gi|335340812|gb|AEH32095.1| Met repressor [Vibrio anguillarum 775]
+ADWNGEYISPYAEHGKKSEQVKKITVSIPLKVLKVLTDERTRRQINNLRHATNSELLCEAFLHAYTGQPLPTDEDLRKDRPDDIPTEAKALMTAMGIEFE
+AYDdeeV
+>gi|85711529|ref|ZP_01042587.1| transcriptional repressor protein MetJ [Idiomarina baltica OS145]gi|85694681|gb|EAQ32621.1| transcriptional repressor protein MetJ [Idiomarina baltica OS145]
+K-WNGDYIYPYAEHGRKSEQVKKVTVSIPTRVLKVLTDERTRRQVKNLRHATNSELLCEAFLHAFTGQPLPTDTDLEKTNPNKIPKAVREELEARGLPIP
+ADDeL
+>gi|336452140|ref|ZP_08622572.1| transcriptional regulator of met regulon [Idiomarina sp. A28L]gi|336280956|gb|EGN74241.1| transcriptional regulator of met regulon [Idiomarina sp. A28L]
+E-WDGEYIYPYAEHGKKSTQVKKITVSIPVNVLKVLTDERTRRQVANLRHATNSELLCEAFLHAFTGQPLPDDEDLRKDNPHKMPKAVREYLDTH--NIP
+YSEdD
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 774 * * 4292 * * * 4475 4277 * * * * * * * 2116 4764 * * 1
+ 156 * 3285 * * * * 1625 0 0
+
+E 2 4605 * 2167 1776 * * * * 1961 * * 3371 * 3461 * * * * * * 2
+ 59 4641 * 1585 585 0 * 1546 1000 1037
+
+W 3 * * * * * * * * * * * * * * * * * * 0 * 3
+ 0 * * * * * * 1586 0 0
+
+S 4 * * 2404 * * * * * * * * 578 * * * 2824 * * * * 4
+ 0 * * * * * * 1586 0 0
+
+G 5 * * * 4574 * 62 * * * * * * * * * * * * * * 5
+ 0 * * * * * * 1586 0 0
+
+E 6 * * 2737 967 * * * * 2092 * * 4090 * 4468 * * * * * * 6
+ 0 * * * * * * 1586 0 0
+
+Y 7 * * * * 4090 * * * * * * * * * * * * * * 87 7
+ 0 * * * * * * 1586 0 0
+
+I 8 * * * * * * * 110 * * * * * * * * * 3764 * * 8
+ 0 * * * * * * 1586 0 0
+
+S 9 * * * * * * 2482 * * * * 2880 * * * 758 * * * 3415 9
+ 0 * * * * * * 1586 0 0
+
+P 10 * * * * * * * * * * * * 0 * * * * * * * 10
+ 0 * * * * * * 1586 0 0
+
+Y 11 * * * * * * * * * * * * * * * * * * * 0 11
+ 0 * * * * * * 1586 0 0
+
+A 12 87 * * * * * * * * * * * * * * * * 4090 * * 12
+ 0 * * * * * * 1586 0 0
+
+E 13 * * * 0 * * * * * * * * * * * * * * * * 13
+ 0 * * * * * * 1586 0 0
+
+H 14 * * * * * * 67 * * * * * * 4468 * * * * * * 14
+ 0 * * * * * * 1586 0 0
+
+G 15 * * * * * 0 * * * * * * * * * * * * * * 15
+ 0 * * * * * * 1586 0 0
+
+K 16 * * * 4090 * * * * 160 * * * * * 4436 * * * * * 16
+ 0 * * * * * * 1586 0 0
+
+K 17 * * * * * * * * 0 * * * * * * * * * * * 17
+ 0 * * * * * * 1586 0 0
+
+S 18 * * * * * * * * 3413 * * 2853 * * * 381 * * * * 18
+ 0 * * * * * * 1586 0 0
+
+E 19 * * 4090 234 * * * * 4531 * * * * * * * 4396 * * * 19
+ 0 * * * * * * 1586 0 0
+
+Q 20 * * * * * * * * 4090 * * * * 87 * * * * * * 20
+ 0 * * * * * * 1586 0 0
+
+V 21 * * * * * * * * * * * * * * * * * 0 * * 21
+ 0 * * * * * * 1586 0 0
+
+K 22 * * * * * * * * 0 * * * * * * * * * * * 22
+ 0 * * * * * * 1586 0 0
+
+K 23 * * * * * * * * 0 * * * * * * * * * * * 23
+ 0 * * * * * * 1586 0 0
+
+I 24 * * * * * * * 341 * 5564 * * * * * * * 2402 * * 24
+ 0 * * * * * * 1586 0 0
+
+T 25 * * * * * * * * * * * * * * 5564 * 31 * * * 25
+ 0 * * * * * * 1586 0 0
+
+V 26 * * * * 5564 * * * * * * * * * * * * 31 * * 26
+ 0 * * * * * * 1586 0 0
+
+S 27 * 4479 * * * * * * * * * * * * * 66 * * * * 27
+ 0 * * * * * * 1646 0 0
+
+I 28 * * * * * * * 0 * * * * * * * * * * * * 28
+ 0 * * * * * * 1646 0 0
+
+P 29 * * * * * * * * * * * * 0 * * * * * * * 29
+ 0 * * * * * * 1646 0 0
+
+L 30 * * * * 4162 * * 2037 * 946 * * * * * * 2910 4371 * * 30
+ 0 * * * * * * 1646 0 0
+
+K 31 * * * * * * * * 613 * * 2344 * * 3424 4162 * * * * 31
+ 0 * * * * * * 1646 0 0
+
+V 32 * * * * * * * * * * * * * * * * * 0 * * 32
+ 0 * * * * * * 1646 0 0
+
+L 33 * * * * * * * * * 0 * * * * * * * * * * 33
+ 0 * * * * * * 1646 0 0
+
+K 34 * * * 2567 * * * * 267 * * * * * * * * * * * 34
+ 0 * * * * * * 1646 0 0
+
+I 35 4805 * * * * * * 1013 * * * * * * * * * 1093 * * 35
+ 0 * * * * * * 1646 0 0
+
+L 36 * * * * * * * * * 0 * * * * * * * * * * 36
+ 0 * * * * * * 1646 0 0
+
+T 37 * * * * * * * * * * * * * * * * 0 * * * 37
+ 0 * * * * * * 1646 0 0
+
+D 38 * * 267 * * * * * * * * 2567 * * * * * * * * 38
+ 0 * * * * * * 1646 0 0
+
+E 39 * * * 0 * * * * * * * * * * * * * * * * 39
+ 0 * * * * * * 1646 0 0
+
+R 40 * * * * * * * * * * * * * * 0 * * * * * 40
+ 0 * * * * * * 1646 0 0
+
+T 41 * * * * * * * * * * * * * * * * 0 * * * 41
+ 0 * * * * * * 1646 0 0
+
+R 42 * * * * * * * * * * * * * * 0 * * * * * 42
+ 0 * * * * * * 1646 0 0
+
+R 43 * * * * * * * * * * * * * * 0 * * * * * 43
+ 0 * * * * * * 1646 0 0
+
+K 44 * * * * * * * * 4766 * * * * 54 * * * * * * 44
+ 0 * * * * * * 1646 0 0
+
+V 45 * * * * * * * 1390 * 4418 * * * * * * * 807 * * 45
+ 0 * * * * * * 1646 0 0
+
+N 46 4371 * * * * 3817 * * 2878 * * 501 * * 4718 * * * * * 46
+ 0 * * * * * * 1646 0 0
+
+N 47 * * * * * * * * * * * 69 * * * 4418 * * * * 47
+ 0 * * * * * * 1646 0 0
+
+L 48 * * * * * * * * * 57 * * * 4684 * * * * * * 48
+ 0 * * * * * * 1646 0 0
+
+R 49 * * * * * * * * * * * * * * 0 * * * * * 49
+ 0 * * * * * * 1646 0 0
+
+H 50 * * * * * * 0 * * * * * * * * * * * * * 50
+ 0 * * * * * * 1646 0 0
+
+A 51 0 * * * * * * * * * * * * * * * * * * * 51
+ 0 * * * * * * 1646 0 0
+
+T 52 * * * * * * * * * * * * * * * * 0 * * * 52
+ 0 * * * * * * 1646 0 0
+
+N 53 * * * * * * * * * * * 0 * * * * * * * * 53
+ 0 * * * * * * 1646 0 0
+
+S 54 * * * * * * * * * * * * * * * 0 * * * * 54
+ 0 * * * * * * 1646 0 0
+
+E 55 * * * 0 * * * * * * * * * * * * * * * * 55
+ 0 * * * * * * 1646 0 0
+
+L 56 * * * * * * * * * 27 5747 * * * * * * * * * 56
+ 0 * * * * * * 1646 0 0
+
+L 57 * * * * * * * * * 0 * * * * * * * * * * 57
+ 0 * * * * * * 1646 0 0
+
+C 58 * 0 * * * * * * * * * * * * * * * * * * 58
+ 0 * * * * * * 1646 0 0
+
+E 59 * * * 0 * * * * * * * * * * * * * * * * 59
+ 0 * * * * * * 1646 0 0
+
+A 60 0 * * * * * * * * * * * * * * * * * * * 60
+ 0 * * * * * * 1646 0 0
+
+F 61 * * * * 0 * * * * * * * * * * * * * * * 61
+ 0 * * * * * * 1646 0 0
+
+L 62 * * * * * * * * * 0 * * * * * * * * * * 62
+ 0 * * * * * * 1646 0 0
+
+H 63 * * * * * * 0 * * * * * * * * * * * * * 63
+ 0 * * * * * * 1646 0 0
+
+A 64 0 * * * * * * * * * * * * * * * * * * * 64
+ 0 * * * * * * 1646 0 0
+
+F 65 * * * * 691 * * * * * * * * * * * * * * 1394 65
+ 0 * * * * * * 1646 0 0
+
+T 66 * * * * * * * * * * * * * * * * 0 * * * 66
+ 0 * * * * * * 1646 0 0
+
+G 67 * * * * * 0 * * * * * * * * * * * * * * 67
+ 0 * * * * * * 1646 0 0
+
+Q 68 * * * * * * * * * * * * * 0 * * * * * * 68
+ 0 * * * * * * 1646 0 0
+
+P 69 * * * * * * * * * * * * 0 * * * * * * * 69
+ 0 * * * * * * 1646 0 0
+
+L 70 * * * * * * * * * 0 * * * * * * * * * * 70
+ 0 * * * * * * 1646 0 0
+
+P 71 * * * * * * * * * * * * 0 * * * * * * * 71
+ 0 * * * * * * 1646 0 0
+
+D 72 2664 4820 2971 4679 * * * * * * * 1859 * 4839 * * 1601 * * * 72
+ 0 * * * * * * 1646 0 0
+
+D 73 * * 59 * * * * * * * * 4652 * * * * * * * * 73
+ 0 * * * * * * 1646 0 0
+
+A 74 3645 * 1239 1580 * 4679 * * * * * 3740 * * * * 4381 * * * 74
+ 0 * * * * * * 1646 0 0
+
+D 75 * * 0 * * * * * * * * * * * * * * * * * 75
+ 0 * * * * * * 1646 0 0
+
+L 76 * * * * * * * 3751 * 111 * * * * * * * * * * 76
+ 0 * * * * * * 1646 0 0
+
+R 77 4508 * 4679 4381 * 4707 * * 4697 4753 2985 * * 4784 935 3845 * * * * 77
+ 0 * * * * * * 1646 0 0
+
+K 78 * * * * * * * * 0 * * * * * * * * * * * 78
+ 0 * * * * * * 1646 0 0
+
+E 79 * * 707 1934 * 4697 * * * * * 4679 * * * * 4381 * * * 79
+ 0 * * * * * * 1646 0 0
+
+R 80 * 4733 * * * * 4820 * 2789 * * 1634 * 3759 1522 * * * * 4715 80
+ 0 * * * * * * 1646 0 0
+
+S 81 3784 * 3448 * * * 4753 4844 4697 * * 2921 1252 * * 2934 * * * 4559 81
+ 0 * * * * * * 1646 0 0
+
+D 82 * * 647 3689 * * 3527 * * * * 2662 * * * * 4679 * * * 82
+ 0 * * * * * * 1646 0 0
+
+E 83 4733 * 3855 1934 * 3201 * * 2529 * * 4707 * 4680 3185 3795 4845 * * 4175 83
+ 0 * * * * * * 1646 0 0
+
+I 84 * * * * * * * 645 * 3616 4388 * * * * * * 2114 * * 84
+ 0 * * * * * * 1646 0 0
+
+P 85 * * * * * * * * * * * * 0 * * * * * * * 85
+ 0 * * * * * * 1686 0 0
+
+E 86 1837 * * 1544 * * * * 3263 4628 * * * 4453 * 3157 4917 4580 * * 86
+ 0 * * * * * * 1686 0 0
+
+A 87 2021 * 3574 1001 * * * * 4480 * * * * * * 2999 * * * * 87
+ 0 * * * * * * 1686 0 0
+
+A 88 794 * * * * * * * * * * * * * * * * 1240 * * 88
+ 0 * * * * * * 1686 0 0
+
+K 89 * * * * * * * * 913 4702 * * * 4628 1357 * * * * * 89
+ 0 * * * * * * 1686 0 0
+
+E 90 2374 * * 2823 * * * 4453 3148 * * 3632 * 3648 2075 4480 * 3952 * * 90
+ 0 * * * * * * 1686 0 0
+
+I 91 * * * 4257 * * * 1687 4585 1531 3764 * * 4640 4480 * * 4686 * 4269 91
+ 0 * * * * * * 1686 0 0
+
+M 92 * * * * * * * * * 2382 307 * * * * * * * * * 92
+ 0 * * * * * * 1686 0 0
+
+R 93 4628 * 2953 1799 * * * * 3638 4640 * * * 3738 2113 4585 3739 * * * 93
+ 0 * * * * * * 1686 0 0
+
+E 94 1820 * 3467 1134 * * * * 4650 * * * * 4747 * 4580 4269 * * * 94
+ 0 * * * * * * 1686 0 0
+
+M 95 * * * * * * 4222 * 4384 1300 1192 * * * 4188 * * * * * 95
+ 79 * 4222 * * * * 1676 0 0
+
+G 96 * * * * * 0 * * * * * * * * * * * * * * 96
+ 0 * * * * * 0 1652 0 1007
+
+I 97 * * * * * * * 816 2911 2123 * * * * * * * 3847 * * 97
+ 76 4287 * 0 * 0 * 1652 1002 1007
+
+N 98 4683 * 1841 2084 * * * * * * * 1919 2833 * * * 4597 * * * 98
+ 0 * * * * * * 1676 0 0
+
+P 99 4583 * * * 3003 * * 1666 * * * * 1637 * * * * 4688 3100 4597 99
+ 0 * * * * * * 1676 0 0
+
+E 100 * * 1846 1317 * * * * * * * 4561 2390 * * 3518 * * * * 100
+ 0 * * * * * * 1676 0 0
+
+T 101 2786 * 2577 2916 4579 * * 4607 4512 * * 3563 * * * 2900 3194 4465 * 4182 101
+ 0 * * * * * * 1669 0 0
+
+W 102 * * 4114 2954 4604 * * 3504 * 3034 * * * * * 4182 * 4627 1776 2521 102
+ 64 4534 * 1000 1000 * * 1669 1000 0
+
+E 103 * * 2193 1075 * * * * * * * 2992 * 2468 * * * * * * 103
+ 1382 699 * 368 2150 * * 1669 1261 0
+
+Y 104 3795 * 3687 2218 * * * * * 3568 * * * * * * * 2942 * 1248 104
+ 0 * * 0 * * * 1637 0 0
+
+//
+�HHsearch 1.5
+NAME fc94ceafa368716b735a0cc814095abc
+FAM
+FILE fc94ceafa368716b735a0cc814095abc
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:35:38 2013
+LENG 170 match states, 170 columns in multiple alignment
+FILT 132 out of 1139 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 8.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECC
+CCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
+>ss_conf PSIPRED confidence values
+9216889878898888999278887688999999999999997068843899347777579987524678865556765504665548888465088645
+3210236776620101145553755178868999762167035786776888999999999985889899
+>Consensus
+xxxxxxxxxWxxxxityxxxxxxxxxxxxxxxxxvxxAxxxWxxxxxlxFxxxxxxxadixixxxxxxxxxxxxxxgxxxxlaxaxxpxxxxxgxixxxx
+xxxxxxxxxxxxxxxxxxxHElGHaLGLxHxxxxxsvMxxxxxxxxxxxxxlxxxDixxixxlYgxxxxx
+>fc94ceafa368716b735a0cc814095abc
+YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDE
+DERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNS
+>gi|73955226|ref|XP_854613.1| PREDICTED: similar to Interstitial collagenase precursor (Matrix metalloproteinase-1) (MMP-1) (Fibroblast collagenase) [Canis familiaris]
+----------------YNLKTGTNKSVRQRNDSLVAEKLKQMQAFFGLKVTGKVnTDTLNLMKQPRCGC-PmwlSTSSLMGANGT-THIrYIY-------
+-------------FGDVLLSQKDIDAPRHSMRL-HSKCFCVTSLPT--------------SLDFRTFIYAlvHSKN-
+>gi|116334127|ref|YP_795654.1| Zn-dependent protease [Lactobacillus brevis ATCC 367]gi|116099474|gb|ABJ64623.1| Predicted Zn-dependent protease [Lactobacillus brevis ATCC 367]
+------TAaktpswgSWDDTTITYKTENTSS-----YYQSIWKNAVKRWNKVGVVKLKAATTGeKADITLTSSAS-LSTQGG--KLAGYTNYSYYKKSG-
+NDQI-VSAKSTLNRSllSKYDytkNQRTNVATHEIGHALGLSHSASKKSVMYASDRY-----ASIDYQDKVALNNAYNN----
+>gi|104783199|ref|YP_609697.1| hypothetical protein PSEEN4224 [Pseudomonas entomophila L48]gi|95112186|emb|CAK16913.1| hypothetical protein PSEEN4224 [Pseudomonas entomophila L48]
+------------RVLKVAFLGSP----DEFLKSEIFRTASQWLlrsgANLSLALTWDNDSQAQIKVRTGRTLP-RNESCAGTDALAM----PAE----TM
+NLNV-------EPGDATFEHVVLHEFGHALGAEHE---------------------------------------
+>gi|302865602|ref|YP_003834239.1| peptidase M7 snapalysin [Micromonospora aurantiaca ATCC 27029]gi|315502150|ref|YP_004081037.1| peptidase m7 snapalysin [Micromonospora sp. L5]gi|302568461|gb|ADL44663.1| peptidase M7 snapalysin [Micromonospora aurantiaca ATCC 27029]gi|315408769|gb|ADU06886.1| peptidase M7 snapalysin [Micromonospora sp. L5]
+------------RNVCYNIS------QAGPFANTAVQAAAIWNnYTNNINMAQCG---snlrITY---TYg------GGSYAQRTSL-------G---NG
+RVVIDYYQ------AQQYSPLRIMTHEIGHILGLpDNYNGNCAiLMSGGSAGTSCTNPYPSSTEAARVDSLFGfaA----
+>gi|310820673|ref|YP_003953031.1| hypothetical protein STAUR_3414 [Stigmatella aurantiaca DW4/3-1]gi|309393745|gb|ADO71204.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
+-------LFWTVPRITWNQSTLGnPGTqpAGSEF-EAVRRSFQSWQDVFsscgNITFEEGPrvadrdvgyvsKgENRNL-VLFRTRQCTvgSvvpaedpc
+weddvcGNVydcWSNGNETIAVTLttyDENTGiiYDSDIELNAVVfSFTTADgprctppltqgCVATDIQNTMTHEIGHLVGLDHTDAPNSTMNPRAPPG
+ETSKRTIDAGSRAFVCESY------
+>gi|339482545|ref|YP_004694331.1| chitinase C [Nitrosomonas sp. Is79A3]gi|338804690|gb|AEJ00932.1| chitinase C; ChiC [Nitrosomonas sp. Is79A3]
+-------AKWAGNNYTVRASSV--GFPVGSWRDALSSVITHWNGNpSNLSYGVVW-DEPGVAAN-----NNENETwWEANNGSnigtyPAvtytw---FN
+SsCNIkEADVIFNNSVAYHYTTsktslwpYGGasRPFQTTAMHEFGHAGGLAHTANTYNIMGQDWTHIHAngstAMAYSGEDANSGLVAVYGLW---
+>gi|119570361|gb|EAW49976.1| tolloid-like 2, isoform CRA_b [Homo sapiens]
+-------SSPDTTAMDTGTKEA---G-KGSQRAIFKQAMRHWEKHTCVTFIERTDEESFIV--FSYRTCG-CCSYVGRRGGGPQAISI------------
+--------GKNCDKFGIVAHELGHVVGFWHEHtrpDRDqhvTIIRENIQPGQEYNFlKMEAGEVSSLGETY------
+>gi|195386972|ref|XP_002052178.1| GJ23077 [Drosophila virilis]gi|194148635|gb|EDW64333.1| GJ23077 [Drosophila virilis]
+------TRHWPNATVYYKIDE---QFSA-AQIQHIELGMRRLELVSCIRFLPASEETV------------------------------------------
+----------------------------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
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+R 103 4101 6784 3812 4656 5108 4573 4426 3715 3864 4267 5322 3844 4195 4867 4405 3374 3403 4788 * 4332 103
+ 86 7239 4288 0 * 1654 552 9045 1000 2884
+
+W 104 4792 6891 5668 6106 2388 5888 6522 6858 5575 3479 5740 5747 4278 * * 7234 5517 4495 1820 2855 104
+ 64 5328 5765 727 1337 3188 168 9021 1215 2845
+
+T 105 4198 4777 4368 5276 5149 4322 5207 3695 5243 3968 6323 3741 6675 4758 6288 2810 2436 3868 * 5698 105
+ 231 3329 4368 1069 934 2857 214 9031 2191 2861
+
+D 106 4608 * 3385 4839 5276 4594 5521 3046 4804 2752 4820 4115 4877 5013 4857 6800 3557 3624 * 3912 106
+ 352 4455 2548 1664 547 * 0 8994 1519 3153
+
+G 107 3575 * 4182 4802 6535 2378 6654 5515 5095 4685 5559 4009 3457 3906 5259 3327 2928 * * 5392 107
+ 549 2120 3533 2362 312 1427 671 8773 3175 4848
+
+S 108 3874 6608 2938 4009 * 4708 6265 6580 4725 4245 5706 2773 3783 6265 5208 2861 3556 3967 * 6403 108
+ 471 1844 * 2287 331 1067 936 8836 3899 4357
+
+S 109 3799 6725 3223 3631 4456 3107 6278 6899 5603 4026 * 5223 4319 3820 4109 3205 4362 5207 * 3712 109
+ 82 4405 6992 1437 665 1138 874 9149 1518 2898
+
+L 110 7104 * 3163 4559 * 3165 5855 5527 4699 5495 5756 3724 3096 4201 4433 2880 3515 5852 6894 3908 110
+ 10 * 7183 * * 3453 138 9249 0 2145
+
+G 111 4370 6755 3930 3703 * 1473 6118 * 4517 4932 5930 3992 4460 4854 4851 4692 5380 4419 6688 4804 111
+ 97 4091 7287 1271 772 476 1832 9254 1799 2127
+
+I 112 5495 3699 5072 3274 4150 4971 5004 4434 5027 3339 6548 3542 6911 5005 4224 4438 3494 3888 6165 3905 112
+ 42 5122 * 1347 721 * 0 9288 1307 1357
+
+N 113 4556 6589 2389 4536 4389 4214 4464 5593 5356 4014 5769 3220 5689 4160 4564 3893 4278 6734 6746 3675 113
+ 99 4551 5407 796 1238 2262 337 9288 1556 1357
+
+F 114 5272 * 6746 6068 3449 3799 * 3416 4540 1737 5051 5345 5382 4526 3817 6866 4654 3599 * 5269 114
+ 33 5469 * 0 * 1779 497 9287 1237 1775
+
+L 115 4377 * * 3379 3733 4325 5892 3925 4951 2792 * 6822 6949 3741 3210 4450 3866 3859 * 3501 115
+ 34 6069 6935 1774 499 1300 752 9289 1087 1520
+
+Y 116 3122 * 4367 4563 5265 2688 4094 * 4654 3995 5504 3536 6033 4142 4415 3678 3968 5270 7166 4316 116
+ 0 * * * * 2114 379 9292 0 1375
+
+A 117 5457 * * * * * * 2706 4803 4373 5606 5397 * * * 4377 1626 1628 * * 117
+ 0 * * * * * 0 9301 0 1260
+
+A 118 1921 * 5597 * 3942 * * 2663 * 2067 4077 * 6731 * 7250 7008 5050 2895 * 7361 118
+ 0 * * * * * 0 9301 0 1260
+
+T 119 2775 5975 * 4278 6854 7258 * 2494 5992 2282 4089 6323 * 4929 4404 * 3052 3455 * 6761 119
+ 0 * * * * 712 1360 9306 0 1260
+
+H 120 * * 5618 * 6023 * 52 * * * * * * * * * * * * * 120
+ 0 * * * * * 0 9301 0 1021
+
+E 121 5618 * * 81 * 6023 * * * * * * * 6548 * 6893 * * * * 121
+ 0 * * * * * 0 9301 0 1021
+
+L 122 7200 * * 6927 2706 * * 1677 * 1416 4089 * 5618 * * * 5978 5174 7416 5981 122
+ 0 * * * * * 0 9301 0 1021
+
+G 123 4891 * * 6893 * 214 * 5979 * 4962 5993 * * 7673 5618 7198 * * * * 123
+ 0 * * * * * 0 9301 0 1021
+
+H 124 * * * * * * 35 * * * * * * 5393 * * * * * * 124
+ 12 * 6893 * * * 0 9301 0 1021
+
+S 125 1346 5688 * 6730 4672 5338 * 3648 * 3835 6217 6575 * 6323 * 3633 3002 3141 6833 * 125
+ 29 6711 6575 0 * * 0 9306 1030 1260
+
+L 126 6649 * * * 4120 6747 * 3122 * 620 3341 * * * * * * 4346 6690 * 126
+ 0 * * * * 430 1957 9284 0 1455
+
+G 127 * * 6736 * * 57 * * * * * 6832 * * 5618 * * * * * 127
+ 0 * * * * * 0 9301 0 1021
+
+M 128 5458 6829 * * 2823 * 6382 3943 * 511 5082 * 6705 * * * * 6760 * * 128
+ 89 4667 5619 0 * * 0 9301 1533 1021
+
+G 129 3263 * 2845 4177 5602 2801 6873 6982 3172 4958 5792 5264 5088 7057 3135 3762 4612 6923 4486 6017 129
+ 0 * * * * 551 1656 9209 0 1347
+
+H 130 * * 4900 5733 * 7116 235 * * * * 5774 * * 6984 5247 4698 * * * 130
+ 46 4981 * 1947 433 * 0 9301 1374 1021
+
+S 131 4909 6893 5399 2739 6770 6057 * 5524 6117 5790 6842 4544 2774 5454 5166 1880 3021 4342 * 6185 131
+ 250 3000 4867 4850 51 0 * 9301 2704 1021
+
+S 132 3898 * 2754 5989 4352 3124 3534 * 4788 * 6012 3608 3663 5019 4878 3545 4756 6566 5168 3638 132
+ 77 4269 * 4298 75 0 * 9025 1700 1497
+
+D 133 3477 4330 1501 3511 4622 4260 5863 * 6539 6719 * 3128 6806 4538 6807 5448 7195 4397 * 4767 133
+ 79 4235 * 2530 274 * * 9026 1687 0
+
+P 134 4343 6718 4454 3612 5006 5888 * 6872 3586 6499 * 4556 2252 4409 3234 3430 4021 5755 * 3569 134
+ 42 5129 * 2564 267 * * 9012 1246 0
+
+N 135 3570 4121 2794 4387 6738 2591 4322 6752 5921 5063 7026 2872 7164 5867 6857 3964 4360 4778 * 4081 135
+ 164 3485 5801 2814 221 * * 9012 2179 0
+
+A 136 3072 * 2990 * * 5762 * * * 6387 * 4472 4499 6364 6559 1019 3906 4245 * * 136
+ 106 3819 * 1847 470 * 0 8969 1831 1172
+
+V 137 5113 * * 6926 * 6553 * 2062 * 2704 6705 6980 6567 6783 * 5615 3622 1305 5995 * 137
+ 28 5682 * 3363 147 1008 992 8966 1166 1172
+
+M 138 5499 * 7017 * * 4668 * 4839 * 4044 338 * * 6458 * 5426 * * * 6726 138
+ 143 3669 6011 0 * 0 * 8976 1981 1021
+
+Y 139 4258 * 5296 6616 4280 4581 4010 6481 5503 3809 * 3569 6723 5881 4431 3058 4562 * 6700 1630 139
+ 100 4651 5216 1263 778 * 0 8980 1405 1098
+
+P 140 3115 * 6602 4151 5096 3931 * 5575 5215 * * * 1310 4248 5724 3663 5873 6436 * 3430 140
+ 27 6537 6981 1000 1000 273 2534 8935 1019 1570
+
+T 141 4716 4817 3952 4779 3222 4394 5731 4470 4631 6004 5044 3440 6542 4148 3745 3095 3702 5121 * 3965 141
+ 79 5141 5328 3212 165 1173 845 8952 1285 1146
+
+Y 142 3934 4819 4640 6613 3274 3855 6640 3480 6302 3370 6429 4253 5917 5334 * 4346 3826 * 4724 2291 142
+ 80 4215 * 1617 569 * 0 8878 1499 1349
+
+G 143 3425 6692 3366 5536 * 3617 * 6417 3029 4237 6792 3463 5027 3527 4299 3525 3751 3857 * 6397 143
+ 201 3875 4014 2432 296 1644 556 8780 1663 1349
+
+N 144 4564 * 3866 4574 4693 1911 4683 * 6423 6585 * 4304 2732 * 4397 3335 5334 * 6564 3342 144
+ 361 3478 2925 2620 256 * 0 8646 1896 1926
+
+G 145 3650 * 3908 3843 5353 2687 6343 4418 5297 4107 * 3602 5242 4282 5089 3291 3774 3785 * 5361 145
+ 421 3740 2490 1464 649 3435 140 8493 1696 3181
+
+D 146 4449 * 2192 4027 6135 3652 4699 6155 5778 5249 * 2978 * 3466 * 5700 2827 3808 5806 5943 146
+ 264 3200 4101 2177 361 2129 374 8116 1749 4263
+
+P 147 3728 4527 5189 5045 * 4514 4974 3669 5846 4273 * 6182 3096 4476 4304 2957 2435 5013 6313 5912 147
+ 278 2993 4332 1966 427 1117 892 8186 1941 3954
+
+Q 148 4087 * 5452 4238 * 4076 4699 6492 4366 * 6356 3196 4762 4758 2942 3450 3626 4726 4640 2917 148
+ 166 5109 3653 2691 243 753 1299 8488 1162 3057
+
+N 149 4425 5180 3613 * * 3926 * * 2659 3996 6011 2707 3745 4841 3797 3614 4224 4111 6133 * 149
+ 283 6179 2608 2322 322 835 1186 8473 1005 2511
+
+F 150 3301 * 4667 * 2974 5972 6293 4245 6089 3163 5050 6205 3922 4826 3441 4023 3870 3898 5455 3894 150
+ 123 3610 * 1346 721 366 2157 8461 1844 3138
+
+K 151 6564 * 4512 4042 * 3552 4995 5336 3677 * 5527 4586 5483 4995 3398 3385 2188 3668 6385 4390 151
+ 34 5424 * 1684 538 1240 794 8746 1133 1433
+
+L 152 5477 * * 6603 2661 * * 2439 * 1332 4048 * 3625 * * 6140 * 5135 5518 5542 152
+ 13 6782 * 4907 49 * 0 8730 1000 1197
+
+S 153 4655 * 4277 4954 * 3417 5550 * 5011 * 3516 4597 5033 3784 * 1756 2438 5795 * * 153
+ 61 4598 * 3233 162 * 0 8730 1455 1197
+
+Q 154 2665 * 3525 3150 5319 4855 * 5290 4862 4196 6751 4974 3320 3084 5539 4142 4181 3933 * 6542 154
+ 0 * * * * * 0 8722 0 1347
+
+D 155 3510 6677 2320 5271 6522 3061 6305 5356 5498 3980 6676 3353 6515 5578 5459 3251 5028 4863 * 3462 155
+ 0 * * * * 551 1656 8722 0 1347
+
+D 156 5156 * 272 3738 * * * * 6414 * * * * 6245 * 4513 * * * * 156
+ 0 * * * * * 0 8836 0 1021
+
+I 157 5666 * 6450 6661 * * * 1385 3228 3155 5711 4747 * 5662 3125 6406 * 2795 * 6573 157
+ 0 * * * * * 0 8817 0 1021
+
+K 158 2233 6314 3420 3416 6550 6270 5856 6374 3739 3883 6358 4230 * 4535 3925 3130 4348 5035 * 5398 158
+ 0 * * * * * 0 8817 0 1021
+
+G 159 1723 * 6310 4997 4827 2057 * * 5476 6041 * 4357 * 6666 4468 3765 3289 5497 5122 6726 159
+ 13 6811 * 2322 322 * 0 8693 1000 1021
+
+I 160 3766 * * * 6556 * * 1740 * 1525 4483 * * * 5412 5705 * 2620 * 5720 160
+ 0 * * * * * 0 8728 0 1021
+
+Q 161 4410 4473 5549 4904 * 5463 5212 6153 3084 6617 * 3457 * 1804 2515 4893 4734 4728 * * 161
+ 0 * * * * * 0 8611 0 1021
+
+K 162 2586 5413 6614 4129 3689 5545 5369 5586 2806 4332 6180 6463 * 4689 4210 4229 4943 * 4572 2642 162
+ 0 * * * * * 0 8611 0 1021
+
+L 163 4568 * * 5334 4492 * * 2495 5214 1075 3665 5366 * * 5494 6326 6560 4290 * 6597 163
+ 0 * * * * * 0 8611 0 1021
+
+Y 164 * * * * 4689 * 6392 * * * * * * 5619 * * * * 4383 183 164
+ 0 * * * * 0 * 8561 0 1021
+
+G 165 3418 * 6268 6230 * 924 * * 5042 * * 3656 2731 4656 5045 5460 * * * * 165
+ 50 4876 * 1000 1000 * * 8388 1197 0
+
+K 166 2584 4283 3729 3989 * 4017 4945 6325 5221 3951 * 4317 5147 4891 3459 3152 3726 4208 * * 166
+ 0 * * * * * * 8310 0 0
+
+R 167 4310 5327 * 5296 * * 5058 * 3766 * * 2033 2554 4378 3164 2379 * * 5096 * 167
+ 0 * * * * * * 7524 0 0
+
+S 168 3680 * 3772 4728 * 4823 * * 2937 * 2548 3702 3643 3274 * 2928 4383 * * 4855 168
+ 0 * * * * * * 6689 0 0
+
+N 169 * * * * * 2462 * * * * * 616 * * * 2591 * * * * 169
+ 0 * * * * * * 3517 0 0
+
+S 170 * * * * * * * * * * * * * * * 0 * * * * 170
+ 0 * * 0 * * * 1574 0 0
+
+//
+�HHsearch 1.5
+NAME fdfbd67ee8a6a80e1c49419316279395
+FAM
+FILE fdfbd67ee8a6a80e1c49419316279395
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:10:23 2013
+LENG 236 match states, 236 columns in multiple alignment
+FILT 231 out of 1040 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECHHHHCCCCEEEEEEECCCCC
+CCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCEEECCCEEECCCCCEEEECCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEEEEEEEEEE
+CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC
+>ss_conf PSIPRED confidence values
+9868999975864775679999879998389645640763371896899999980787699999944899872688772268939765799999605886
+3343688999998746445535541678838988886776990753981498299863368966026468998378878586999761268999999953
+799998669999767888889888766562325899
+>Consensus
+xnxxvAVEFDTxxnxxxxDpxxnHvgIxvnsxxSxxxxxxxlxxGxxxxxxIxYdxxxxxLxVxlxxxxxxxxxlsxxxdLxxxlxxxxxvGFSasTGxx
+xxxhxIlswxFxsxxxlxxxaxxxxxxFxfxxFxxxxxxlxxxGxAxixxxgxlxLTxxxxxxxxxxxxGraxyxxPvxlxdxxxxxaSFsTxFxFxIxx
+xxxxxgdGlAFxlapxxxxxpxxsxgxxLGLxnxxx
+>fdfbd67ee8a6a80e1c49419316279395
+ADTIVAVELDTYPNTDIGDPSYQHIGINIKSIRSKATTRWDVQNGKVGTAHISYNSVAKRLSAVVSYPGGSSATVSYDVDLNNILPEWVRVGLSASTGLY
+KETNTILSWSFTSKLKSNSTADAQSLHFTFNQFSQSPKDLILQGDASTDSDGNLQLTRVSNGSPQSDSVGRALYYAPVHIWDKSAVVASFDATFTFLIKS
+PDREIADGIAFFIANTDSSIPHGSGGRLLGLFPDAN
+>gi|255572597|ref|XP_002527232.1| kinase, putative [Ricinus communis]gi|223533408|gb|EEF35158.1| kinase, putative [Ricinus communis]
+----------------------------------------------------------------------------------------------------
+-----------------LLPPSTTSVSFQKTRFDPSDTSIIYEGGATP-SVGSIEF-------------------N------------------------
+----------------------------------S-
+>gi|242082227|ref|XP_002445882.1| hypothetical protein SORBIDRAFT_07g027410 [Sorghum bicolor]gi|241942232|gb|EES15377.1| hypothetical protein SORBIDRAFT_07g027410 [Sorghum bicolor]
+----------------------------------------------------------------------------------------------------
+------------------QEpgqlQPLEVATYNYTSFQEgnskEQRELAFSREARI-YKGAIQVSPDTaNVGSYqDimvNKSGSVLLQRRFTMWShvdvd
+ggGGGngsatsrvQVVSFNSTFSINVFHlpDSSpRPGEGLTFVVA-PSRDePPPGSYGGYLGLTN---
+>gi|297820310|ref|XP_002878038.1| hypothetical protein ARALYDRAFT_906979 [Arabidopsis lyrata subsp. lyrata]gi|297323876|gb|EFH54297.1| hypothetical protein ARALYDRAFT_906979 [Arabidopsis lyrata subsp. lyrata]
+----------------------------------------------------------------------------------------------------
+----------------------SLTHDFSFVGFKK-AsPNLIITGVAEIAATGAIRLTT---DTQR--VIGHAFYSLPIRFKPIgVNRALSFSTSFAIAM
+VPEFvTLGGHGLAFAITPTP-DLRGSLPSQYLGLLNSSR
+>gi|115452011|ref|NP_001049606.1| Os03g0258000 [Oryza sativa Japonica Group]gi|113548077|dbj|BAF11520.1| Os03g0258000 [Oryza sativa Japonica Group]
+SNHVFAVELDTVLSPELHDIDSNHVGIDVNSLQFIQSHTAgyyddstgafmnlTLISRKAMQVWVDYNGQAMVLNVTLAPLGvskPKKPLLPTGLDLSRV
+VEDIAYIGFSSATGlSI-AYHYVLGWSFSLNG--------------------------------------------------------------------
+-----------------------------------------------------
+>gi|255579110|ref|XP_002530403.1| carbohydrate binding protein, putative [Ricinus communis]gi|223530052|gb|EEF31973.1| carbohydrate binding protein, putative [Ricinus communis]
+--GYLGIEFGYSRDGN----DGNSTKILV--LIRVNNEPLghvWTERGQRMKAWIDYDASSKRIEIRINELNGkRpyDPFAAYALDLSKMWSDnEAFVVL
+GSNDgGNPSGTCNVYSWRFRLRKV----------------------------------------------------------------------------
+--------------------------------------------
+>gi|125562917|gb|EAZ08297.1| hypothetical protein OsI_30549 [Oryza sativa Indica Group]
+-----SLPLELTFDASRNLVSASSAGVDVDG---NSTAAVDLRNGNEVGSWVVYDASLARLEVFVSHASLRppTPALAADAdSIAARFAEFMFVGFevts
+SSGNGSSDGGFLIQSWTFQTSG------------------------------------------------------------------------------
+-------------------------------------------
+>gi|125605283|gb|EAZ44319.1| hypothetical protein OsJ_28941 [Oryza sativa Japonica Group]
+----------------------------------------------------------------------------------------------------
+----------------------ASTLSYNFSdpqSFTS--GDLHFEGDAYLG-DTSVVLAKKGTGE-VNPKAGRILYKQPCPSLEQhHRRGNELHHHL-L
+LPHE----RRTGRAGILPH---------------------
+>gi|91215870|ref|ZP_01252839.1| hypothetical protein P700755_15086 [Psychroflexus torquis ATCC 700755]gi|91185847|gb|EAS72221.1| hypothetical protein P700755_15086 [Psychroflexus torquis ATCC 700755]
+----LTIEFDTFQNADFGDPAGDHISIMRNGNPnhnlSTNLaGPvlaidtnPDIEDGIAHDVRIEWDASTNTLSVFFDCLL--R--LTFTDNVKDTiFsg
+DNSVFFGFVGSTGGDTNIHEVCFnrVSFVDNLQ-------------------------------------------------------------------
+-----------------------------------------------------
+>gi|300175644|emb|CBK20955.2| unnamed protein product [Blastocystis hominis]
+----FAIAFSTFKNKEFAryhrDIA-----LYVGDGNTGAFIQdkdhtgCyaryrfhekrqDFSVDNYAVVKIGYSEITGMVRVAIDEKNTGnyHICIHE
+HIDLPAGWWRKATIGISATTGQLADNHDILSVET------------------------------------------------------------------
+-----------------------------------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+A 1 2008 * 3559 3653 5542 * * * 4047 5345 * 5166 5539 4210 * 1633 * 4944 * 5485 1
+ 33 5465 * 0 * * * 5117 1000 0
+
+D 2 3444 * 3254 * 6256 6647 * 4841 6209 * * 896 5555 * 6596 3210 5151 6244 * 6204 2
+ 42 * 5112 * * * * 5832 0 0
+
+T 3 6382 * * 5565 * 3325 2406 * 4016 * * 4214 3552 2760 2123 4039 4660 * * * 3
+ 0 * * * * 1735 515 6225 0 1078
+
+I 4 5800 6671 * * 2619 5662 * 3092 6657 3250 5282 * * 6711 6070 2177 3008 2910 * 5121 4
+ 0 * * 1000 1000 0 * 6449 1043 1043
+
+V 5 6737 * * * 2720 * * 2677 * 2526 * * * * * 6084 * 1017 * * 5
+ 12 6957 * 1000 1000 * * 6515 1000 0
+
+A 6 386 6871 * * 5436 4269 6091 * * 6202 6948 6427 * * * 4103 5112 6863 7016 * 6
+ 21 6128 * 1585 585 * * 6593 1018 0
+
+V 7 * 6542 * * 5674 * * 2051 * 3941 6427 * * * 6128 * * 650 * * 7
+ 0 * * * * * * 6593 0 0
+
+E 8 4712 * * 224 * 5432 * * 4701 * * * 5366 * * * * 5672 * * 8
+ 24 5921 * 1705 529 * * 6593 1030 0
+
+L 9 * * * * 309 * * 5012 * 3149 * * * * * * * 5001 * 5806 9
+ 17 * 6445 * * * 0 6593 0 1000
+
+D 10 * * 243 5349 * 5843 5865 * 6321 6742 * 6583 * * 6123 5284 * 5417 * * 10
+ 0 * * * * 2067 394 6585 0 1068
+
+T 11 6282 * 5097 6503 * * 6126 3959 * 4991 * 4904 * * * 4407 498 5029 * 5845 11
+ 25 * 5854 1000 1000 0 * 6586 1043 1043
+
+Y 12 5027 6854 * * 1759 5025 3737 6711 * 5408 7520 6407 5509 7087 4826 4025 6529 3654 3907 2144 12
+ 130 5064 4146 1343 723 888 1122 6591 1085 1039
+
+P 13 5213 * 7161 5705 4077 5089 5261 6008 1978 4355 5810 4759 3682 2931 3171 4029 6074 6685 6036 4721 13
+ 53 6020 5600 1000 1000 1570 593 6541 1021 1286
+
+N 14 6019 * 2443 6330 6650 5156 * * 6428 6745 * 710 * 5856 * 4178 4773 * * 6793 14
+ 216 6711 2948 2322 322 2470 287 6517 1000 1256
+
+T 15 2812 * 2870 4649 4594 3906 6771 6775 3620 7124 * 4118 2678 6733 6426 3626 3881 3942 * 5853 15
+ 440 5213 2085 620 1517 1898 451 6413 1125 1710
+
+D 16 4023 * 2586 1827 5659 2848 5137 * 4353 * * 4025 4973 6496 4938 4031 4667 5922 * * 16
+ 871 3360 1491 763 1284 1905 448 6289 1332 2238
+
+I 17 * 4785 * 6046 1918 5813 6182 3928 5532 3147 5169 4296 4924 5303 5753 5672 4297 3872 5681 2852 17
+ 59 5704 5571 0 * 461 1870 6097 1003 2781
+
+G 18 4268 * 3500 6084 4768 2922 * 4873 4917 5364 * 2276 * 6797 3788 4556 6473 * 2144 5883 18
+ 99 3920 * 1156 859 1947 433 6419 1196 1577
+
+D 19 6673 * 383 3983 * 5721 * * 7077 6370 * 4817 * 5356 6073 5183 * * * 5705 19
+ 11 7077 * 1000 1000 3589 125 6446 1000 1422
+
+P 20 5689 * 5582 4806 * * 6973 2865 * 5014 * 5355 720 6594 * 5255 4771 4531 * * 20
+ 29 6509 6760 1000 1000 458 1878 6466 1003 1384
+
+S 21 4837 * 2535 5446 6775 5246 7196 5039 4998 * * 1969 4305 5967 4753 2392 4648 4926 * 4534 21
+ 236 3236 4485 1059 943 1984 420 6581 1430 1118
+
+Y 22 4015 5334 2732 5049 5784 1841 * 5981 6838 * 4664 3487 5651 * 6761 3324 4381 5324 7158 3772 22
+ 56 4718 * 0 * 670 1429 6496 1093 1339
+
+Q 23 6541 5742 2767 6227 * 6694 6234 * 6712 * * 967 4246 4399 5347 3305 4631 * * * 23
+ 0 * * * * * 0 6537 0 1103
+
+H 24 * 5499 * * * * 299 * * 6806 * 6101 6340 6691 4686 4262 6471 6895 * 6777 24
+ 36 * 5342 * * * 0 6537 0 1103
+
+I 25 4013 * * * * * * 1305 6721 4459 6062 * * * * * 5690 1172 * * 25
+ 0 * * * * * 0 6498 0 1194
+
+G 26 3055 * 6537 6658 * 633 * * 5690 6370 * * * * 5752 2727 6271 * * * 26
+ 0 * * * * 1944 434 6498 0 1194
+
+I 27 6607 * * 6178 5785 * * 717 * 2713 * * * * * * * 2460 * 6024 27
+ 0 * * * * * 0 6546 0 1134
+
+N 28 6770 * 1303 6845 6379 5602 4736 * 6282 3675 5113 2080 * 3400 6178 * * 6996 * 4884 28
+ 19 6282 * 1000 1000 * 0 6546 1012 1134
+
+I 29 5254 6751 7032 6024 6732 6687 * 2121 5143 2958 6683 4794 * 6225 5620 5334 3094 1671 * * 29
+ 61 5483 5702 1770 501 914 1091 6546 1051 1134
+
+K 30 6948 6883 3719 6287 * 3312 * 7359 5236 * * 720 5506 * 3585 5669 5101 * * * 30
+ 51 4845 * 2030 405 * 0 6542 1104 1108
+
+S 31 * 5903 5029 * 6549 1667 6710 * 6468 * * 4012 * 6523 4771 1186 4126 * * * 31
+ 86 6156 4510 1106 901 1161 855 6542 1035 1108
+
+I 32 4601 * * 6761 5166 6032 * 2438 5290 2705 3191 4730 5582 6752 4399 3991 4538 2235 * * 32
+ 90 4199 7321 410 2016 1671 544 6492 1167 1220
+
+R 33 5272 * 4397 3361 6896 6788 6549 3609 2961 4911 * 3294 6595 4929 2959 3566 3896 3119 * 5860 33
+ 122 3924 6033 2072 392 * 0 6508 1218 1165
+
+S 34 6410 * 6093 * * * 5738 * 4454 6699 6736 5075 3607 6525 5797 508 4876 6317 * * 34
+ 11 7039 * 1000 1000 750 1302 6418 1000 1223
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+ 261 2597 * 1084 920 1605 575 6593 1612 1405
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+ 138 3598 6879 573 1610 646 1470 6655 1373 1261
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+ 54 4771 * 1068 935 * 0 6722 1128 1000
+
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+ 118 3896 6465 227 2781 1148 866 6340 1238 1411
+
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+ 30 5604 * 0 * 157 3282 6493 1041 1251
+
+A 206 2047 * 5141 * * 703 * 5050 * * * * * 7155 5552 4799 6652 * * 6473 206
+ 35 * 5386 * * * 0 6722 0 1000
+
+D 207 * 4972 1190 3152 5111 4220 2578 * * * * 4418 5733 5520 * 5478 5547 * * 4792 207
+ 13 6789 * 0 * 355 2196 6666 1003 1099
+
+G 208 5748 * 7264 * * 67 * * * * * * * * 6476 * * 6810 * * 208
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+ 0 * * * * * 0 6722 0 1043
+
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+
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+ 70 6858 4701 1000 1000 * 0 6691 1011 1051
+
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+ 105 4930 4750 0 * 655 1454 6646 1088 1204
+
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+ 218 6749 2935 0 * 190 3020 6350 1000 1204
+
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+
+G 223 2013 6466 3983 5444 * 2059 6050 * 4541 6210 6685 2701 * * 4474 4460 4477 5491 * 5506 223
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+
+S 224 4286 * 4721 6840 4701 3821 6776 5114 5561 3608 5293 4687 5490 5567 5459 1163 4966 5721 6366 6415 224
+ 35 6454 6330 0 * 1501 629 6205 1003 1073
+
+G 225 2465 6064 6384 5051 * 3491 5046 6527 4592 5036 6547 4889 2777 * 6693 2790 3503 5112 6102 3580 225
+ 53 5098 7207 0 * 430 1957 6204 1092 1078
+
+G 226 5037 6437 4432 4680 * 752 * 6415 * 6180 * 4060 6599 * 6893 3283 4340 * * 5464 226
+ 31 * 5572 1585 585 819 1207 6192 1001 1031
+
+R 227 5566 * * 5178 * 1074 5968 6885 6666 * 6856 5737 4430 1974 4603 4277 6408 6761 * * 227
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+
+L 228 5022 4683 6475 5924 2720 4969 4928 * * 3898 * 3836 * * * 5230 5670 5922 3521 1326 228
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+
+L 229 * * * * 3870 * * 4742 * 206 5797 * * * * * * * * 6712 229
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+G 230 4549 * * * * 119 * * * * * 5480 * * * 6151 * * * * 230
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+L 231 * * * * 4588 * * 3347 * 348 * * * * * * * 3996 6383 * 231
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+
+F 232 4435 * * * 1187 * * 4297 * 2444 5043 * 4970 7031 * * 3167 3340 * * 232
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+
+P 233 4841 * 3486 4164 * 5687 * * 5436 * 6497 795 4402 * 6077 3605 4439 * * * 233
+ 0 * * * * * 0 6073 0 1101
+
+D 234 3514 * 4351 3304 6492 3657 * 5209 3953 6293 * 3587 2868 4741 3338 3147 4068 5455 * 5994 234
+ 129 3547 * 0 * 660 1445 5983 1158 1101
+
+A 235 3110 5115 5062 4233 * 4027 6008 5885 4364 * * 4710 5498 5968 5343 1630 2281 * * * 235
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+
+N 236 * * 2568 * * * * * 3995 * * 722 * * * * 2622 * * * 236
+ 0 * * 0 * * * 4327 0 0
+
+//
+�HHsearch 1.5
+NAME ff5c81bfb664296a11b43497a69645cc
+FAM
+FILE ff5c81bfb664296a11b43497a69645cc
+COM /import/bc2/soft/app/hhsuite/2.0.16/Linux/bin/hhmake -i <118 characters> -o <118 characters>
+DATE Fri Sep 6 12:34:34 2013
+LENG 198 match states, 198 columns in multiple alignment
+FILT 10 out of 12 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 2.7
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCCCEEEEEEEECCCCEEEEECCEEEEEEEEEEECCCCEEEEEECCEEEEEEEEECCCHHHHCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCC
+CCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCEEEEECCEEHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCC
+>ss_conf PSIPRED confidence values
+9766646688841144137987996999987899649988999856759999998757412300456546677882260447856568870578410110
+49769998889888986833897898865788756257988898197242387889456545999757676874573353218678999874177689
+>Consensus
+xxxxNxvxVxGssxGSGgvftxxgxxvvvTAsHVlxxxxaxvxxvxxxrxxltFkxxGDyaeaxxxxxxxxGxxPxxxxaxxxxGrAYwxxxxGvexgxi
+gxxxxxxfTxxGDSGSPViexGxliGVHTGSnxxGxGxvTtxxGxtxxxxxvkLSemxxhyxGPxvxxxxklpxxiixDvxxVpxxLaxllxxxxxxe
+>ff5c81bfb664296a11b43497a69645cc
+KARGNVGFVAGSSYGTGSVWTRNNEVVVLTASHVVGRANMATLKIGDAMLTLTFKKNGDFAEAVTTQSELPGNWPQLHFAQPTTGPASWCTATGDEEGLL
+SGEVCLAWTTSGDSGSAVVQGDAVVGVHTGSNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLTSIPKDIPDNIIADVDAVPRSLAMLIDGLSNRE
+>gi|330895434|gb|AEC48046.1| polyprotein [Simian hemorrhagic fever virus]
+--ATNTRRICGEKVGVCGVFQRGVDHIIITASHVLGNGDVGVVEIEGQRREVTFKKTGDFAvGNITG---LKGAYPTYREAPNHIGRAYWLCANGVESGF
+VGTDGCVVYTGPGDSGSPVVtPSGDLIGIHTGSDTFGCGAISKSDGHVI-VGPVKLSEMARYYAGPLQKTPTKMPRNVVGDCENVPLTLARVIAD-----
+>gi|330895463|gb|AEC48058.1| polyprotein [Simian hemorrhagic fever virus]
+--TDNAVGVFGTSVGSGGLFNRNGKTIVVTASHVIGDRNEGYVDLAGIRTRVQFVKKGDFAEGEID---VPGTYPDFKPVTNYVGRAYWLCQNGVEAGFI
+APTGCVVFTGPGDSGSPIItPDGSFIGVHTGSDAKGCGAFTTISGETV-HGVVPLSVIAPHYDG-V-sTTVKHLPKNVVADVTTVPHSLANILEK-----
+>gi|62511096|sp|Q9WJB2.2|RPOA_PRRSR RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12
+KPSLNTVNVIGSSMGSGGVFTIDGKVKCVTAAHVLTGNSARVSGVGFNQ-MLDFDVKGDF--AIADCPNWQGAAPKTQFCTDGwTGRAYWLTSSGVEPGV
+IGKGFAFCFTACGDSGSPVItEAGELVGVHTGSNKQGGGIVTRPSGQFCNVAPIKLSELSEFFAGPKVPLGDvKVGSHIIKDISEVPSDLCALLAAKPEL
+E
+>gi|302393818|sp|Q04561.3|RPOA_PRRSL RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12
+KPCLNTVNVVGSSLGSGGVFTIDGRRTVVTAAHVLNGDTARVTGDSYNR-MHTFKTNGDY--AWSHADDWQGVAPVVKVAK-GyRGRAYWQTSTGVEPGI
+IGEGFAFCFTNCGDSGSPVIsESGDLIGIHTGSNKLGSGLVTTPEGETCTIKETKLSDLSRHFAGPSVPLGDiKLSPAIIPDVTSIPSDLASLLASVPVV
+E
+>gi|62510944|sp|Q06502.2|RPOA_LDVC RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12
+GCAKNVVSVFGSASGSGGVFTINGNPVVVTASHLLSDGKARVSCVGFSQ-CLDFKCAGDY--AFARVANWKGDAPKAELSH--rRGRAYCSPLVGLSLDL
+LGKNSAFCFTKCGDSGSPVVdEDGNLLGIHTGSNKRGSGMVTTHGGKTLGMANVKLSEMCPHYSGPGVPVSTvKLPKHLVVDVETVSSDLVAVVESLPAL
+E
+>gi|123432666|ref|YP_001008394.1| polyprotein 1ab [Lactate dehydrogenase-elevating virus]gi|62510951|sp|Q83017.2|RPOA_LDVP RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12
+GCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQ-CLTFKSVGDY--AFARVAEWKGDAPKVELSD--rRGRAYCSPQVEWSLVL
+LGPNTAFCFTKCGDSGSPVVdEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTvRLPKHLIVDVEAVASDLVAVVESLPTP
+E
+>gi|262358357|gb|ACY56797.1| replicase polyprotein 1a [Porcine reproductive and respiratory syndrome virus]
+KPCLNTVNVVGSSLGSGGVFIIDGRKTIITATHVLNGDTARVTSDSYNR-MHTFRANGDY--AWSYADDWQGVAPAVKVAK-SyRGRAYWQTSSGVEPGV
+IGEGFALCFTNCGDSGSPVIsETGDLVGVHTGSNKLGSGLVTTPEGETCSIKETRLSDLSRYFAGPNVPLGDiKLSPAIIPDVTFVPSDLASLLASVPVV
+E
+>gi|62510949|sp|Q68772.3|RPOA_SHFV RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12
+---SNSVSVYGVTCGSGGLFSDGNNTVCLTATHVCGNNKAVVDYQGT-RYEAVFTTKGDYASAVVP---IPGAFPPLKFAPQSyTGRAYWYANTGVETGF
+VGTTGCLVFSGPGDSGSPIItPDGLIVGVHTGSDSKGSGAYTTPNGLTV-SGPLSLKEMGAHYEGPIVDVPTRLPRNVHNDTKSVPQPLARLLESSIN--
+>gi|22299180|ref|NP_682427.1| hypothetical protein tlr1637 [Thermosynechococcus elongatus BP-1]gi|22295362|dbj|BAC09189.1| tlr1637 [Thermosynechococcus elongatus BP-1]
+------------SHGSGILLQRHGNTyVILTAYHVIEKGGQYtVKTVDGQRYavrpssirrlpsvdlaTLEIESNRDYtlatlgnsGEAVEGMPVFVAGF
+PAQEASV--LGGIYQFTEGRLtanASRPIQDGYALVYSNptlPGMSGGPVLdENGRLIGIHGS-------------------------------------
+-------------------------------
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+K 1 * * * * * 1744 * * 512 * * * * * * * * * * * 1
+ 0 * * * * * * 2090 0 0
+
+A 2 1942 1744 * * * * * * * * * * 1180 * * * * * * * 2
+ 0 * * * * * * 2090 0 0
+
+R 3 1453 2359 * * * * * * * * * * * * 2533 3074 2753 * * * 3
+ 0 * * * * * * 2537 0 0
+
+G 4 * * 3016 * * 2700 * * 2400 1847 * * * * * 3012 2930 * * * 4
+ 0 * * * * * * 2658 0 0
+
+N 5 * * * * * * * * * * * 0 * * * * * * * * 5
+ 0 * * * * * * 2658 0 0
+
+V 6 3016 * * * * * * * * * * * * * * 3012 1289 1542 * * 6
+ 0 * * * * * * 2658 0 0
+
+G 7 * * * * * 2700 * * * * * * * * 2930 * * 484 * * 7
+ 0 * * * * * * 2658 0 0
+
+F 8 * * * * 2700 3016 * * * * * 1847 * * 2930 1674 * * * * 8
+ 0 * * * * * * 2658 0 0
+
+V 9 * * * * * * * 2930 * * * * * * * * * 203 * * 9
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+ 0 * * * * * * 2658 0 0
+
+S 186 * * 1097 * * * * * * * * * 3012 * * 1850 2930 * * * 186
+ 0 * * * * * * 2658 0 0
+
+L 187 * * * * * * * * * 0 * * * * * * * * * * 187
+ 0 * * * * * * 2658 0 0
+
+A 188 503 3251 * * * * * * * * * * * * * * * 2400 * * 188
+ 0 * * * * * * 2658 0 0
+
+M 189 1763 * * * * * * * * * 2700 3016 * * 1970 2533 * * * * 189
+ 0 * * * * * * 2658 0 0
+
+L 190 * * * * * * * 3016 * 848 * * * * * * * 1641 * * 190
+ 0 * * * * * * 2658 0 0
+
+I 191 * * * * * * * 1811 * 928 * * * * * * * 2400 * * 191
+ 0 * * * * * * 2658 0 0
+
+D 192 1289 * 2700 1194 * * * * * * * * * * * * * * * * 192
+ 0 * * * * * * 2658 0 0
+
+G 193 3251 * 2930 * * 2700 * * 3016 * * * * * * 1040 * * * * 193
+ 0 * * * * * * 2658 0 0
+
+L 194 * * * * * * * * 2865 1145 * * * * * 2438 * 2147 * * 194
+ 0 * * * * * * 2334 0 0
+
+S 195 * * * * * * * 2438 * * * * 718 * * 2268 * * * * 195
+ 0 * * * * * * 2334 0 0
+
+N 196 3043 * * 2865 * * * * * * * 1351 * * * * 3019 2147 * * 196
+ 0 * * * * * * 2334 0 0
+
+R 197 * * * * * * * * * 1675 * * 2722 * 1942 * * 1863 * * 197
+ 0 * * * * * * 2090 0 0
+
+E 198 * * * 0 * * * * * * * * * * * * * * * * 198
+ 0 * * 0 * * * 2090 0 0
+
+//
+�
\ No newline at end of file
diff --git a/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db.index b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db.index
new file mode 100644
index 0000000000000000000000000000000000000000..c0afc6b812ba3c42cac91d69ced8a6b4be1c1127
--- /dev/null
+++ b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db.index
@@ -0,0 +1,200 @@
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diff --git a/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db.index.sizes b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db.index.sizes
new file mode 100644
index 0000000000000000000000000000000000000000..08839f6bb296e888d311d8ea2f35f7ff82dd3f2d
--- /dev/null
+++ b/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb_hhm_db.index.sizes
@@ -0,0 +1 @@
+200
diff --git a/modules/bindings/tests/testfiles/test.hhr b/modules/bindings/tests/testfiles/test.hhr
new file mode 100644
index 0000000000000000000000000000000000000000..ff9f05a8dc7f32ad9db367374a967388f8865453
--- /dev/null
+++ b/modules/bindings/tests/testfiles/test.hhr
@@ -0,0 +1,101 @@
+Query Test
+Match_columns 141
+No_of_seqs 253 out of 255
+Neff 9.4
+Searched_HMMs 5
+Date Mon Aug 31 16:45:45 2015
+Command /import/bc2/apps/HH-suite/2.0.16-goolf-1.4.10/bin/hhblits -cpu 1 -n 1 -e 0.001 -Z 10000 -B 10000 -i /import/bc2/home/schwede/bienert/git/ost_newenv.git/modules/bindings/tests/testfiles/testali.a3m -o /scratch/tmp9E5dor/testali_cpu1_n1.hhr -d /import/bc2/home/schwede/bienert/git/ost_newenv.git/modules/bindings/tests/testfiles/hhblitsdb/hhblitsdb
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 3e7b90809bd446a538f9eb1a1ca0e5 100.0 2.7E-42 6.9E-45 222.3 16.4 140 1-141 1-147 (153)
+ 2 af828e69a5f2d0fd42a2a213e09eb6 100.0 1.5E-41 3.9E-44 215.7 17.2 141 1-141 1-141 (141)
+ 3 9287755aa6aa27583da6be3b2408bf 100.0 3.8E-41 9.7E-44 215.1 16.5 138 1-141 2-146 (146)
+ 4 e69e1ac0a4b2554df25f2c2183b0fb 0.6 64 0.16 12.6 2.6 21 93-113 176-196 (248)
+
+No 1
+>3e7b90809bd446a538f9eb1a1ca0e551
+Probab=100.00 E-value=2.7e-42 Score=222.30 Aligned_cols=140 Identities=26% Similarity=0.420 Sum_probs=135.4
+
+Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhCccccccCCCC-CC-C----CCChhHHHHHHHHHHHHHHHHhccC
+Q Test 1 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DL-S----HGSAQVKGHGKKVADALTNAVAHVD 74 (141)
+Q Consensus 1 ~lt~~~~~~i~~sW~~v~~~~~~~g~~~f~~lf~~~P~~~~~F~~~-~~-~----~~~~~~~~h~~~v~~~l~~~i~~ld 74 (141)
+ |||++|+++|++||+.+.++.+++|..||.+||+.+|+++.+|+.| ++ + .+|+.|++|+.+|+++|+.+|+++|
+T Consensus 1 ~lt~~e~~~i~~sW~~v~~~~~~~g~~~f~~lF~~~P~~~~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~~l~~~i~~ld 80 (153)
+T 3e7b90809bd446 1 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG 80 (153)
+T ss_pred CcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHCccHHhhCccccccCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
+Confidence 7999999999999999998889999999999999999999999999 77 4 6999999999999999999999999
+
+
+Q ss_pred CHHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhhcC
+Q Test 75 DMPNALSALSDLHAHK-LRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 (141)
+Q Consensus 75 ~~~~~l~~l~~~H~~~-~gv~~~~f~~~~~~l~~~l~~~lg~~~~~~~~~AW~~~~~~i~~~m~~~~~ 141 (141)
+ |++..+..||++|. . +||+|+||+.|+++|+++|++.+|+.||++++.||.+++++|++.|.++|+
+T Consensus 81 ~~~~~l~~lg~~H~-~~~gv~~~~f~~~~~~l~~~l~~~lg~~~t~~~~~AW~~~~~~i~~~~~~~~~ 147 (153)
+T 3e7b90809bd446 81 HHEAELKPLAQSHA-TKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 147 (153)
+T ss_pred hhHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHHH
+Confidence 99999999999999 8 999999999999999999999999999999999999999999999999884
+
+
+No 2
+>af828e69a5f2d0fd42a2a213e09eb64f
+Probab=100.00 E-value=1.5e-41 Score=215.69 Aligned_cols=141 Identities=100% Similarity=1.413 Sum_probs=135.4
+
+Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhccCCHHHHH
+Q Test 1 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 80 (141)
+Q Consensus 1 ~lt~~~~~~i~~sW~~v~~~~~~~g~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~h~~~v~~~l~~~i~~ld~~~~~l 80 (141)
+ |||++|+++|++||+.+.++.+++|..||.+||+.+|+++++|+.|+++++||+|++|+.+|+++|+.+|+++||++.++
+T Consensus 1 ~Lt~~~~~~i~~sW~~i~~~~~~~g~~~~~~lf~~~P~~~~~F~~~~~~~~~~~~~~h~~~~~~~l~~~i~~ld~~~~~~ 80 (141)
+T af828e69a5f2d0 1 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 80 (141)
+T ss_pred CcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHChhHHHHcccccCCccCHHHHHHHHHHHHHHHHHHHhhccHHHHH
+Confidence 79999999999999999888899999999999999999999999986667899999999999999999999999999999
+
+
+Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhhcC
+Q Test 81 SALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 (141)
+Q Consensus 81 ~~l~~~H~~~~gv~~~~f~~~~~~l~~~l~~~lg~~~~~~~~~AW~~~~~~i~~~m~~~~~ 141 (141)
+ ..|++.|.+++||+|+||+.++++|+.+|++.+|++||+++++||++++++|++.|.++|+
+T Consensus 81 ~~l~~~H~~~~gv~~~~f~~~~~~l~~~l~~~lg~~~~~~~~~AW~~~~~~i~~~~~~~y~ 141 (141)
+T af828e69a5f2d0 81 SALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 (141)
+T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHhcC
+Confidence 9999999636999999999999999999999999999999999999999999999999996
+
+
+No 3
+>9287755aa6aa27583da6be3b2408bfcc
+Probab=100.00 E-value=3.8e-41 Score=215.11 Aligned_cols=138 Identities=45% Similarity=0.799 Sum_probs=133.1
+
+Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhCccccccCCCC-CCC-----CCChhHHHHHHHHHHHHHHHHhccC
+Q Test 1 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTNAVAHVD 74 (141)
+Q Consensus 1 ~lt~~~~~~i~~sW~~v~~~~~~~g~~~f~~lf~~~P~~~~~F~~~-~~~-----~~~~~~~~h~~~v~~~l~~~i~~ld 74 (141)
+ +||++|+++|++||+.+. .+++|..||.+||+.+|+++.+|+.| +++ ++|+.+++|+.+|+++|+.+|+++|
+T Consensus 2 ~Ls~~~~~~i~~sW~~v~--~~~~g~~~~~~lf~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~~~~~l~~~i~~l~ 79 (146)
+T 9287755aa6aa27 2 HLTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD 79 (146)
+T ss_pred CCCHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHCHHHHHHcccccccCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
+Confidence 699999999999999995 68999999999999999999999999 774 5899999999999999999999999
+
+
+Q ss_pred CHHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhhcC
+Q Test 75 DMPNALSALSDLHAHK-LRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 (141)
+Q Consensus 75 ~~~~~l~~l~~~H~~~-~gv~~~~f~~~~~~l~~~l~~~lg~~~~~~~~~AW~~~~~~i~~~m~~~~~ 141 (141)
+ ++...+..||+.|. . +||+|+||+.++++|++++++.+|++||+++++||++++++|++.|++||+
+T Consensus 80 ~l~~~l~~lg~~H~-~~~gv~~~~~~~~~~~l~~~l~~~lg~~~~~~~~~AW~~~~~~i~~~m~~~~~ 146 (146)
+T 9287755aa6aa27 80 NLKGTFATLSELHC-DKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 146 (146)
+T ss_pred hHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHhcC
+Confidence 99999999999999 8 999999999999999999999999999999999999999999999999996
+
+
+No 4
+>e69e1ac0a4b2554df25f2c2183b0fba0
+Probab=0.56 E-value=64 Score=12.63 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=13.9
+
+Q ss_pred CCHHHHHHHHHHHHHHHHHhc
+Q Test 93 VDPVNFKLLSHCLLVTLAAHL 113 (141)
+Q Consensus 93 v~~~~f~~~~~~l~~~l~~~l 113 (141)
+ .+|++.+.+-+.+-+.+.+..
+T Consensus 176 a~~e~i~~~~~~IR~~l~~~~ 196 (248)
+T e69e1ac0a4b255 176 ATPEQAQLVHKEIRKIVKDTC 196 (248)
+T ss_pred CCHHHHHHHHHHHHHHHHHhc
+Confidence 467777777776666665543
+
+
+Done!
diff --git a/modules/bindings/tests/testfiles/test.hmm b/modules/bindings/tests/testfiles/test.hmm
new file mode 100644
index 0000000000000000000000000000000000000000..d1cf2e521e6e678cf864e1308128d4b1620cd29b
--- /dev/null
+++ b/modules/bindings/tests/testfiles/test.hmm
@@ -0,0 +1,469 @@
+HHsearch 1.5
+NAME Test
+FAM
+FILE test
+COM /import/bc2/apps/HH-suite/2.0.16-goolf-1.4.10/bin/hhmake -i ../modules/bindings/tests/testfiles/testali.a3m -o test.hmm
+DATE Mon Aug 31 11:37:41 2015
+LENG 141 match states, 141 columns in multiple alignment
+FILT 112 out of 255 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 9.3
+SEQ
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
+HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+9999999999999988733915579999999986394411239877888888567889999999999987354777899999998876502999898998
+89999999997536679989999999999999999984329
+>Consensus
+xltxxxxxxixxsWxxvxxxxxxxgxxxxxxlfxxxPxxxxxFxxxxxxxxxxxxxxhxxxvxxxlxxxixxldxxxxxlxxlxxxHxxxxgvxxxxxxx
+xxxxlxxxlxxxxgxxxxxxxxxAWxxxxxxixxxmxxxyx
+>Test
+VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL
+LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
+>gi|1170183|sp|P42511.1|LGB_CANLI RecName: Full=Leghemoglobingi|495289|gb|AAA18503.1| leghemoglobin [Canavalia lineata]
+-FSEKQESLVKSSWEAFKQNVPHHSAVFYTLILEKAPAAQNMFSFLSNGvdPNNPKLKAHAEKVFKMTVDSAVQLRAKGEVvlaDPTLGSVHV-QKGVLD
+PHFLVVKEALLKTFKEAVGDKWNDELGNAWEVAYDELAAAIKKAM-
+>gi|88813510|ref|ZP_01128744.1| hypothetical protein NB231_06775 [Nitrococcus mobilis Nb-231]gi|88789223|gb|EAR20356.1| hypothetical protein NB231_06775 [Nitrococcus mobilis Nb-231]
+--------LFNDSYERCIDnpNPPGFLQRFYKVFLSSSEEVAEKFKNT-------DFEKQTRVLKASLYYLMLScNGspEAMAHLRRIACLHSrKQLDIR
+PELYDLWLASLLQAAREYD-PRFDQQTETAWRQVLSHGIDFMKSRY-
+>gi|336324532|ref|YP_004604499.1| hypothetical protein Flexsi_2317 [Flexistipes sinusarabici DSM 4947]gi|336108113|gb|AEI15931.1| hypothetical protein Flexsi_2317 [Flexistipes sinusarabici DSM 4947]
+-VKESDLKELGSIWEQMSKYSDEFTTDMSAFVV-KNFKLPETYST-------EITDEYKAMLGKLYERVLsGRFNNDYvSFLIKFSEFNL-AYSINQEMV
+NSlisyARSWIHEKIFQNIPDDFQrKGILMMFHKIMDITGDIIISTYY
+>gi|289549194|ref|YP_003474182.1| hypothetical protein Thal_1426 [Thermocrinis albus DSM 14484]gi|289182811|gb|ADC90055.1| conserved hypothetical protein [Thermocrinis albus DSM 14484]
+-WTAEDEENLRSLSHLVPSWVEEFLES---------------IRK-------DEhDERCFQSIREWLIATFsGPHDERYvRKIHNMLQEHL-KAGCTLHH
+LQVllssVREFLLDKLTAQLGYSHQrDSLFRSVEKTLDLSLSIMLLSQK
+>gi|341887822|gb|EGT43757.1| CBN-GLB-25 protein [Caenorhabditis brenneri]
+----RDFFTLKNWWKSVDRKRVEASTYMFSRYLNDFPENKAFYAKLkNVnAqtvdmnCSDPGFEAMAAQYLKVFDDVITAveekPGDVQSacdRLSAVGK
+MHR-AkvSGagMESSMFQNMEEPFIQMVKYILQDRFNEKAEMLYRKFFQFCLKYLLEGF-
+>gi|17567933|ref|NP_509614.1| GLoBin family member (glb-17) [Caenorhabditis elegans]gi|3877381|emb|CAA86423.1| C. elegans protein F49E2.4a, partially confirmed by transcript evidence [Caenorhabditis elegans]
+-ITDEEVTAIRDVWRRA--KTDNVGKKILQTLIEKRPKFAEYFGIQsESlDiralNQSKEFHLQAHRIQNFLDTAVGSLGFcpissVFDMAHRIGQIHF-
+YRGVNfgADNWLVFKKVTVDQVTtgttdsskekedtnsngtangkvdtdaSLIPiadinNVYSGencLARLGWNKLMTVIVREMKRGFL
+#
+NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
+ 0 * * 0 * 0 * * * *
+V 1 4902 4723 * * * 3431 3746 * 3837 * 5128 4860 1870 4923 4832 2670 5280 3268 * * 1
+ 44 5066 * 2000 415 * * 6988 1000 0
+
+L 2 * * * * 3118 6092 * 3501 * 792 3848 * * * * * 6569 3621 4536 * 2
+ 0 * * * * * * 8826 0 0
+
+S 3 6516 * 6204 * * * 6508 * 5652 * * 3368 6238 6481 5972 1433 1325 4717 * * 3
+ 0 * * * * * * 8861 0 0
+
+P 4 3037 6170 2764 2586 * 4445 6630 5465 3966 4811 6242 * 2872 4851 4994 3922 5028 4835 * 5338 4
+ 0 * * * * * * 8912 0 0
+
+A 5 2684 * 3384 2457 * 5021 6212 3905 2685 * * 5386 4978 3661 4250 3499 * * * 5368 5
+ 0 * * * * * * 8946 0 0
+
+D 6 6353 * 1855 1840 * * 5446 6208 6634 6380 * 5599 * 1624 * * 5141 * * * 6
+ 0 * * * * * * 8971 0 0
+
+K 7 4798 6591 * 4398 5308 * 5441 2820 2041 3610 * * * 4776 2557 * 5226 2971 5746 6354 7
+ 0 * * * * * * 9237 0 0
+
+T 8 2935 * 3662 2847 5479 6921 5604 5134 2313 5429 * 5576 6602 3209 4105 4257 5027 5543 * 4469 8
+ 17 * 6376 * * * * 9250 0 0
+
+N 9 2579 * 5088 4363 7129 5773 5485 3082 5829 1592 * 3594 * 6552 5667 * 3839 4146 * * 9
+ 18 6337 * 0 * 0 * 9395 1049 1017
+
+V 10 4999 * * * 5673 * * 1706 * 1684 5250 * * * * * 5697 1807 * * 10
+ 0 * * * * * * 9429 0 0
+
+K 11 4282 * 5528 4776 * 5343 4720 5849 2459 3699 * 4481 * 2703 1771 * 4969 5148 * * 11
+ 14 * 6686 * * * * 9429 0 0
+
+A 12 3354 * 3142 3008 6297 4668 5790 * 3319 * * 3482 * 3477 3812 2383 4628 * * 6427 12
+ 0 * * * * * 0 9415 0 1016
+
+A 13 3828 6340 5053 * 6520 * 5571 4774 * 4054 6421 5620 * 6689 * 1162 2255 4380 6356 * 13
+ 0 * * * * * 0 9415 0 1016
+
+W 14 5645 * * 6340 3125 6297 * 5166 * 5527 6671 * * * * 6085 * 4853 528 4709 14
+ 0 * * * * 0 * 9415 0 1016
+
+G 15 2813 6632 3972 2769 6609 4325 5523 6552 3445 7078 * 3444 3587 4198 4054 3274 4552 6711 * * 15
+ 0 * * * * * * 9429 0 0
+
+K 16 3244 * 7059 5967 5867 5117 5470 3398 2698 3402 5964 4598 4890 4009 3205 4184 4203 3652 * 6878 16
+ 29 5643 * 1000 1000 * * 9429 1188 0
+
+V 17 3752 5102 6678 * 4196 * * 2157 * 2304 3643 6616 7131 5873 5614 * 6685 1938 * * 17
+ 179 4214 3998 1249 788 * * 9438 1879 0
+
+G 18 3766 7049 4191 3306 4893 5031 5890 4759 2692 4858 4741 4350 6086 4777 3462 3210 5010 5578 5230 4618 18
+ 258 4118 3235 850 1168 2935 202 9332 1827 2044
+
+A 19 2910 6335 3373 3864 * 4053 5684 6256 2601 6505 6772 * 2997 3506 4283 3488 4498 6210 * * 19
+ 153 4100 4568 861 1154 1073 931 9175 1747 3490
+
+H 20 5751 * 2174 4627 5269 3790 3644 5356 3245 4600 6471 2595 6360 4665 4498 5610 6922 5517 6021 4989 20
+ 36 5355 * 1361 711 224 2795 9237 1215 2928
+
+A 21 3777 * 4702 5615 5098 3888 5184 4467 2604 3226 5230 5612 3495 5298 5134 3728 4896 4066 5079 4665 21
+ 127 3718 6923 1356 715 * 0 9433 2200 1153
+
+G 22 3783 * 2784 2705 * 4650 5552 5227 4274 5447 7004 3897 3644 3149 4627 5558 3491 4379 * * 22
+ 77 4258 * 1618 569 1040 961 9433 1771 1462
+
+E 23 3350 * 4160 1900 6504 3768 5221 5756 3864 5644 * 4326 5764 3864 3823 4167 3951 4980 * * 23
+ 0 * * * * 0 * 9433 0 1153
+
+Y 24 3321 5664 6994 * 2411 * 3896 3008 * 3301 5362 3574 5612 5695 * 6063 4739 3024 6603 4118 24
+ 0 * * * * * * 9438 0 0
+
+G 25 2802 6446 6086 6979 4990 939 6603 * 6452 4925 6462 * * * * 4419 3930 3627 * 6587 25
+ 11 7014 * 3000 193 * * 9438 1000 0
+
+A 26 4114 6525 3406 4022 6462 6773 7035 4099 4022 3408 5885 4860 5762 3508 4219 3212 3042 3433 * * 26
+ 30 5622 * 2937 202 * * 9438 1210 0
+
+E 27 3127 6446 3489 2993 6462 4760 4961 3759 3026 4286 6553 3721 * 4443 4235 4442 4065 5164 * 6398 27
+ 36 6586 6152 1585 585 * * 9438 1020 0
+
+A 28 4205 5115 * * 1764 * * 1998 * 2780 3482 * * * * 6551 5856 3196 * * 28
+ 0 * * * * * 0 9386 0 1125
+
+L 29 6513 * * * 1447 * 6474 * * 2521 4310 * * * * 5926 6576 5836 * 1548 29
+ 0 * * * * * 0 9386 0 1125
+
+E 30 3434 * 4076 3517 5038 4990 6344 3346 3022 3127 5363 5843 * 4437 3637 3947 4034 4966 * 5350 30
+ 25 5856 * 4708 56 * 0 9386 1133 1125
+
+R 31 4323 5020 5945 5130 5249 4881 5219 5126 2755 5624 6862 3533 * 4858 1655 5731 4423 5553 5225 5059 31
+ 17 6448 * 3000 193 * 0 9386 1027 1125
+
+M 32 6350 6363 * * 2354 * * 3639 * 1171 3502 * * * * * 6646 3751 5575 4011 32
+ 0 * * * * * 0 9385 0 1125
+
+F 33 4975 5448 * 6460 806 * 6457 4755 * 2246 4801 6653 * 5535 * * * 5304 6634 * 33
+ 63 * 4558 * * * 0 9385 0 1125
+
+L 34 3330 * 4459 2124 6279 * * 6307 2936 5248 6733 3786 * 3717 4110 3393 3021 6810 * * 34
+ 0 * * * * 463 1864 9210 0 1899
+
+S 35 3265 6883 3754 3319 * * 4232 4216 2663 3422 4454 4935 * 4498 3486 3684 4464 6359 * 7001 35
+ 11 * 6977 * * * 0 9370 0 1125
+
+F 36 3681 5226 3589 5133 3735 * 2930 6706 4746 6808 7014 2549 * 6741 3944 3809 6926 5219 * 2624 36
+ 0 * * * * 1509 624 9372 0 1290
+
+P 37 4986 * 5115 4223 5927 * 7096 6485 6673 6374 * * 436 6653 6640 4663 6452 7068 * 6396 37
+ 0 * * * * * 0 9370 0 1125
+
+T 38 4121 * 2286 1986 6452 4323 5194 * 4763 4981 5558 4418 * 3947 4459 3563 5740 5505 6359 6382 38
+ 0 * * * * * 0 9370 0 1125
+
+T 39 3830 5004 5876 6920 3804 * * 3285 * 2396 3829 4439 * * 6396 4376 3128 3070 6728 3479 39
+ 0 * * * * * 0 9370 0 1125
+
+K 40 3900 * * 4772 * 6585 6577 4535 1889 3687 7155 6485 5927 2702 2176 6725 5604 4764 * 6907 40
+ 0 * * * * * 0 9370 0 1125
+
+T 41 3167 6352 3656 2806 * 6382 * 6071 3638 4801 * 3544 3741 4601 4568 2980 3329 5659 * 5566 41
+ 0 * * * * * 0 9370 0 1125
+
+Y 42 4364 * * * 3174 * 5228 3511 3000 2456 3190 * 5102 5173 5836 6883 5927 4155 * 2698 42
+ 16 * 6485 * * 0 * 9370 0 1125
+
+F 43 * * * * 246 * * 5224 * 4507 6379 * * * * * * * 5256 4381 43
+ 10 * 7184 * * * 0 9401 0 1043
+
+P 44 4754 * 4359 5788 * 2876 4688 * 2799 6449 6923 4035 2580 5187 4618 2987 3796 4858 * 5126 44
+ 109 * 3782 * * 1241 794 9408 0 1207
+
+H 45 5622 * 4692 4241 4747 3520 4388 5590 2472 5594 5876 4333 6840 3521 3268 3820 3778 4462 6729 5086 45
+ 391 4616 2347 808 1222 1276 769 9335 1555 2381
+
+F 46 3811 * 4827 6187 1414 * 6356 4681 * 2998 4009 6484 * 6302 5610 4757 3975 3846 6233 4701 46
+ 1690 694 3802 168 3184 2346 316 8928 6906 4656
+
+D 47 4386 * 2057 3487 6402 2414 5438 6412 3777 5797 * 2720 * * 5362 3532 4838 * * * 47
+ 154 4874 3903 668 1431 2398 304 8904 1339 4866
+
+L 48 5399 5312 5218 6425 3694 * 5533 3883 3008 2047 4152 4211 5535 5471 5267 6292 4881 2824 * 6453 48
+ 649 1736 4017 728 1335 3441 139 8868 4629 4852
+
+S 49 4111 * 2584 3942 * 3932 * 6227 3198 5172 * 4699 2673 6486 * 2461 3700 6133 * 6014 49
+ 2314 398 4643 2006 413 3053 185 8706 7555 5415
+
+H 50 3304 5840 5887 4083 * 6033 6349 4019 2787 3248 5537 4987 3434 3713 3001 4216 4297 6096 * * 50
+ 144 3397 * 2052 398 2150 368 8593 1972 5743
+
+G 51 3203 * 4126 4322 4568 4310 5421 6652 3509 * * 3292 * 3435 4660 2294 3364 * 6538 5352 51
+ 17 * 6406 * * 2982 195 8806 0 4926
+
+S 52 4926 * 2610 5957 6054 4934 5615 5282 * 6116 5459 2048 5331 6426 * 1753 4137 5358 * * 52
+ 40 6184 6230 0 * 1179 840 8884 1019 4639
+
+A 53 3151 6250 4282 3262 6379 4708 5344 6550 3599 5403 * 4056 1811 5822 5681 3521 4385 * * 6695 53
+ 32 * 5505 * * 809 1220 9252 0 3358
+
+Q 54 3272 6501 2954 3304 5184 3754 6710 5916 3189 5161 6483 4640 6937 3604 3367 4097 5050 4900 6449 5818 54
+ 52 5219 6838 0 * 1914 445 9350 1345 2329
+
+V 55 4774 * 6129 6543 1648 * * 3404 6782 2188 3177 6501 * 7125 * 6464 5940 3247 7038 5206 55
+ 17 6412 * 1585 585 1400 687 9371 1034 2105
+
+K 56 4547 6450 4826 3392 6778 4288 3868 5920 2492 4206 * 3967 * 3419 2528 4083 4767 * * 6439 56
+ 0 * * * * 2419 299 9408 0 1638
+
+G 57 2498 6326 4830 3699 6126 3564 4391 6455 3628 4032 * 4135 * 4569 2909 3988 5293 5168 6982 4576 57
+ 13 * 6764 * * * 0 9409 0 1489
+
+H 58 * 6139 * * 6684 * 996 6794 5468 3712 5198 * * 1884 6385 * 6552 6930 * 4729 58
+ 29 * 5661 * * 1345 722 9399 0 1658
+
+G 59 1803 3789 * 5385 4751 2668 * 4963 3928 5346 5644 6561 5795 * 5702 3572 4341 3334 * * 59
+ 45 6461 5670 2322 322 1331 731 9386 1026 1703
+
+K 60 3321 * 4508 3694 5494 4634 5614 4104 3050 3060 5705 4853 * 5546 3433 3896 3865 3555 * 6899 60
+ 0 * * * * * 0 9373 0 1725
+
+K 61 3583 6435 * * * 6348 5334 4178 3011 4667 4294 5401 * 4071 2050 3323 3082 4474 * 6552 61
+ 23 5978 * 1948 433 1276 768 9373 1141 1725
+
+V 62 * * * * 2188 * * 2332 * 2231 4254 * * * * 6458 * 1817 * 5556 62
+ 0 * * * * * 0 9400 0 1360
+
+A 63 3024 5675 * * 3641 4182 * 3882 6728 2272 2976 * * 4538 5387 4379 4689 2957 6802 5695 63
+ 0 * * * * 1399 688 9400 0 1360
+
+D 64 3620 5444 3823 2550 * 3549 6368 5829 3590 5078 4771 2909 * 3419 4088 4856 4307 6818 * 6561 64
+ 0 * * * * 0 * 9413 0 1157
+
+A 65 2125 7471 * 6757 3747 3442 * 3967 6897 3201 4810 * * 5315 4596 3331 4021 3466 4732 5873 65
+ 0 * * * * * * 9425 0 0
+
+L 66 * * * * 3355 * * 2277 * 1220 4234 * * * * * 6747 2506 * 5147 66
+ 0 * * * * * * 9425 0 0
+
+T 67 4311 6893 2064 3008 * 3252 5124 5509 5767 5354 6946 3170 6577 5063 7471 3539 3962 4385 * 5970 67
+ 15 6577 * 4087 87 * * 9425 1026 0
+
+N 68 3853 5810 3461 3687 4231 6957 5929 5040 3138 4178 5125 3398 6385 5637 3872 3730 3686 4723 6734 4527 68
+ 0 * * * * * * 9425 0 0
+
+A 69 2441 4834 * * 3592 4566 * 2487 * 2497 4156 * * * * 4757 5515 2723 5847 5944 69
+ 0 * * * * * * 9425 0 0
+
+V 70 3525 6577 * 6712 4514 * * 1706 * 3068 3883 * * * * 6582 7000 1607 * 6734 70
+ 119 3653 * 1455 654 * * 9425 2384 0
+
+A 71 5064 * 2849 2879 * 3033 6671 7035 2885 5820 5752 3334 * 4104 4531 3594 4114 4538 * * 71
+ 0 * * * * * * 9425 0 0
+
+H 72 3303 5864 6509 4452 5012 4870 3777 7424 3852 4273 * 2147 6168 5259 4084 2692 5257 5211 * 5197 72
+ 134 3659 6712 1063 940 * * 9425 2296 0
+
+V 73 4636 5878 5223 7414 4601 * 6163 3414 5247 1190 3608 5815 4657 6413 6554 6715 5771 4219 * 4235 73
+ 78 4477 7016 1162 854 0 * 9407 1719 1017
+
+D 74 4768 6566 1212 3047 7415 2771 4798 * 5855 * * 3860 5825 5147 6739 4783 5808 5949 * * 74
+ 53 4796 * 1419 676 * 0 9420 1539 1000
+
+D 75 5762 * 1745 3181 5154 5798 4732 7290 3956 * * 2023 5600 4593 5057 3924 6112 * * * 75
+ 437 1936 * 1771 500 0 * 9420 5056 1000
+
+M 76 3688 5873 4573 4433 4131 5321 5376 3747 5098 2138 4329 6629 2939 5831 4880 4485 5310 3870 * * 76
+ 75 4577 6809 3105 178 * * 9425 1618 0
+
+P 77 3472 * 2824 2430 6643 4570 4761 5087 3852 5196 5823 5195 5987 4604 4777 3475 4449 4268 * 4565 77
+ 191 3014 * 1129 882 0 * 9423 3111 1000
+
+N 78 3011 6705 5148 2566 6803 3870 5281 5499 3196 4604 * 3946 6938 4641 4631 3122 3756 4552 * 6810 78
+ 298 2552 5956 1515 621 * * 9425 3846 0
+
+A 79 4608 * 7007 4521 3615 6807 5161 3323 4104 2120 3735 * 5803 5213 5554 5307 4067 3026 6590 4579 79
+ 118 3669 * 1585 585 1327 734 9394 2275 1166
+
+L 80 3910 5469 6730 * 4155 * 6840 2978 4771 1214 5212 * * * 5892 5102 * 2822 6013 6369 80
+ 16 6504 * 1585 585 * 0 9396 1034 1027
+
+S 81 3296 5856 4282 3929 * 7176 5375 4848 3074 4103 4710 3665 3918 3900 3580 3919 3900 4861 * 5658 81
+ 10 7165 * 1585 585 0 * 9396 1000 1027
+
+A 82 3086 * 3970 3012 5082 5555 5099 * 2717 5590 6493 4744 5296 3978 3132 4027 4907 4884 * 4018 82
+ 16 6493 * 1585 585 * * 9425 1034 0
+
+L 83 5506 * * 5582 4278 * * 2353 6629 1214 3367 5309 * 5909 * * 5703 3474 * 5594 83
+ 39 5728 6946 964 1036 * * 9425 1202 0
+
+S 84 2425 6934 6726 4893 6474 1402 5848 5149 4967 5032 6696 4990 * * 5016 3413 5621 3671 * * 84
+ 18 * 6368 * * 0 * 9417 0 1000
+
+D 85 3383 6738 4279 3223 * 4928 4406 5576 2558 5762 5491 4850 6609 2917 3220 4318 4813 5456 * 4983 85
+ 0 * * * * * 0 9394 0 1104
+
+L 86 5137 * 4741 5525 5227 6588 5537 4235 3117 2440 6469 5111 6869 6932 2666 3655 3429 3280 * 6455 86
+ 213 2866 * 1575 590 0 * 9394 3228 1104
+
+H 87 6572 * * 6375 * 4357 199 * * * * 5999 * 6635 * 6827 * * * 5428 87
+ 0 * * * * * * 9425 0 0
+
+A 88 2536 5409 5241 5839 4449 6901 4839 4587 3189 3695 * * * 5716 2844 3759 5394 2563 6760 6933 88
+ 2833 3693 354 993 1007 * * 9425 2252 0
+
+H 89 3653 4336 4648 2658 4500 * 4668 * 3460 * 4432 4473 * 4645 2592 * 2314 * * * 89
+ 243 2689 * 1342 724 33 5457 6878 1372 8628
+
+K 90 3245 6569 3874 4460 4623 3462 4748 6728 2677 7032 7070 3613 4250 4325 3054 4788 4190 6026 * 6630 90
+ 190 3018 * 1057 945 887 1123 9407 3174 1184
+
+L 91 4651 6412 6999 6310 3825 * 4785 4982 4859 2718 4337 5843 5254 7080 2127 4342 * 5106 * 2357 91
+ 41 5147 * 1566 594 0 * 9417 1396 1000
+
+R 92 7168 6861 4335 * * 1066 5440 * 3466 * * 3614 4710 3926 3791 3915 * 6708 6650 * 92
+ 81 4197 * 1980 422 * * 9425 1852 0
+
+V 93 3931 5328 * 6375 3487 * * 2053 * 2934 4200 * 5625 7016 * * * 1498 * * 93
+ 37 5318 * 0 * * * 9425 1329 0
+
+D 94 4978 4977 3150 3462 * 3628 5313 6635 3195 6154 * 3582 4013 4785 4057 4744 2339 5883 * * 94
+ 14 6649 * 1000 1000 * * 9425 1013 0
+
+P 95 3278 * 5392 4650 6577 3743 5203 4254 4638 4148 5353 7015 1745 4551 4383 3355 5961 4752 * * 95
+ 0 * * * * * * 9425 0 0
+
+V 96 3394 * 2750 2017 5660 4495 3971 6886 3221 6884 * 6717 4786 3759 4525 5090 4454 5704 * * 96
+ 0 * * * * * * 9422 0 0
+
+N 97 5724 * 3940 5910 5162 6932 2092 5646 * 3207 3795 4874 * 3471 5643 4971 6958 5068 5845 2344 97
+ 0 * * * * * * 9422 0 0
+
+F 98 6475 * * * 1307 * * 3813 * 2920 4421 * 6373 * * * * 4065 3106 2769 98
+ 0 * * * * * * 9422 0 0
+
+K 99 3914 * 2607 2496 * 4023 * 6309 3632 4316 7028 3079 4361 3664 4409 5812 5375 5734 5774 7048 99
+ 28 5709 * 1891 453 * * 9422 1183 0
+
+L 100 3161 * 3858 3687 5860 5865 7073 3889 4782 2651 4676 3771 3910 4228 6768 4876 5044 3183 7133 6187 100
+ 79 4228 * 2000 415 * * 9422 1899 0
+
+L 101 4122 * * * 1907 5923 * 3571 * 2043 3166 * * * * 6380 * 2556 5126 6586 101
+ 0 * * * * * * 9422 0 0
+
+S 102 3126 5159 * 5608 4902 2054 * 4760 3130 3563 * * 6074 4562 3068 3393 6951 5626 6677 5854 102
+ 14 6703 * 0 * * * 9422 1001 0
+
+H 103 4334 6647 3394 1978 * 4922 5248 6683 4142 * * 3906 4034 4216 3483 3319 4771 4652 6581 7014 103
+ 0 * * * * * * 9422 0 0
+
+C 104 1778 3778 6741 6929 5236 7023 * 3278 * 4710 7016 5479 4616 4791 * 3173 5247 2625 5996 5603 104
+ 0 * * * * * * 9422 0 0
+
+L 105 5621 6309 * * 2189 * * 2758 * 1279 4319 * * * * 6485 5503 3675 6703 5896 105
+ 0 * * * * * * 9422 0 0
+
+L 106 5473 * 6745 7014 5661 5805 5318 2556 6570 1822 4304 * 5916 5041 4968 * 3881 2267 6706 5674 106
+ 0 * * * * * * 9422 0 0
+
+V 107 3532 6453 3000 2256 4324 4080 5346 6742 4229 5357 6669 5862 5884 3840 4053 3584 5271 5792 5867 5126 107
+ 0 * * * * * * 9333 0 0
+
+T 108 2621 5571 * 5083 4792 6906 5683 6379 5068 4262 4327 6664 * 6594 5498 4086 2272 2650 * 3164 108
+ 0 * * * * * * 9333 0 0
+
+L 109 4799 5432 * * 2921 * * 2063 * 1621 3054 * * * * * 6379 3158 * * 109
+ 44 6313 5862 1585 585 * * 9333 1087 0
+
+A 110 3297 6683 6811 2783 5105 3885 6948 5301 2965 5385 * 4866 5373 3327 2914 3685 4264 4987 * * 110
+ 15 6579 * 4755 54 1003 997 9317 1013 1151
+
+A 111 3161 6557 3409 2200 6771 5939 5522 * 3422 6532 * 3963 5218 3375 4458 3182 4550 5862 * 6444 111
+ 69 6749 4735 1585 585 0 * 9322 1001 1000
+
+H 112 3212 4845 * 4212 6614 5101 3751 4477 3410 3622 5667 5284 * 4282 3977 5539 4239 2674 6496 3900 112
+ 106 7095 3972 0 * 0 * 9373 1000 1550
+
+L 113 5352 4370 4151 6426 3697 4849 5735 3928 6239 1367 4703 5713 * 4978 * 5419 5779 3506 6311 5022 113
+ 338 4663 2563 3331 151 1148 866 9264 1542 1963
+
+P 114 4150 6214 * 4713 * 846 5704 * 3411 * 6380 * 3024 5434 6387 4673 * 6232 * * 114
+ 132 4508 4521 1381 699 955 1047 9189 1503 4041
+
+A 115 3346 6541 2812 4965 * 3710 * 6588 3643 5091 * 3795 3178 4954 4391 3369 4013 3804 6361 6025 115
+ 37 6250 6344 1000 1000 784 1254 9234 1046 3127
+
+E 116 3538 5000 3160 3933 7119 3548 3929 * 3088 * * 3738 5601 3780 3312 3338 5708 5001 * 6490 116
+ 109 4272 5565 1382 698 1136 876 9259 1751 2035
+
+F 117 4176 6733 6850 * 2041 * 5346 3977 5248 3220 4773 6686 5750 * 5409 4261 * 4766 2478 3251 117
+ 33 5457 * 4186 82 1585 585 9288 1269 1855
+
+T 118 4877 * 2285 5727 6561 5936 5528 * 4717 * * 2982 6963 5020 5257 2534 1781 * * * 118
+ 108 3962 6961 778 1263 914 1092 9370 2036 1521
+
+P 119 2598 6300 2734 3577 6487 4057 4620 6920 4271 5586 6422 6112 3023 3673 4332 3496 5083 * * * 119
+ 54 6552 5246 1585 585 1590 582 9389 1013 1317
+
+A 120 3202 * 2745 1904 7038 4944 * 5417 3954 5569 * 4802 6905 3208 5671 3297 4594 6546 * * 120
+ 27 6614 6959 2000 415 * 0 9358 1002 1644
+
+V 121 2588 5448 5835 5246 6759 7629 5903 3111 * 2828 5053 6329 * 3963 6445 4939 2516 2789 * 6770 121
+ 0 * * * * 2611 258 9353 0 1798
+
+H 122 3479 * 4791 2168 6135 5731 6829 4176 2729 3657 5544 6606 6646 3768 3705 * 4199 3678 * * 122
+ 0 * * * * 0 * 9358 0 1644
+
+A 123 2950 * 3385 2361 * 3932 5625 6791 3549 4564 4793 4781 * 4136 3611 3995 3994 5567 * * 123
+ 12 6919 * 1585 585 * * 9333 1000 0
+
+S 124 723 * * 5756 * 4665 * 4527 * 5009 5975 * * * 6677 2836 4178 4975 6759 * 124
+ 11 7016 * 3000 193 * * 9333 1000 0
+
+L 125 5652 * * * 3969 * * * * 4262 5034 * * * * * * 5441 357 5057 125
+ 0 * * * * * * 9333 0 0
+
+D 126 3795 * 3376 3576 * 4559 4916 4510 2934 4630 4979 3787 * 5121 2700 3799 3591 6011 * * 126
+ 0 * * * * * * 9333 0 0
+
+K 127 4016 5519 3926 3827 6541 4812 5734 5779 1446 4315 * 5253 * 4143 4090 4792 4130 4484 * * 127
+ 0 * * * * * * 9333 0 0
+
+F 128 2344 4789 * * 2941 5045 * 3311 * 2003 4114 * * * * 6723 3978 3095 * 6878 128
+ 0 * * * * * * 9333 0 0
+
+L 129 6609 * * * 2250 5799 * 3505 * 1874 3431 5201 * * * 6680 5175 4267 4290 2832 129
+ 14 6744 * 0 * * * 9333 1000 0
+
+A 130 3258 * 2255 4171 * 3221 6959 * 3195 6778 6451 4511 6603 3967 3964 3035 3992 6604 6943 * 130
+ 13 * 6817 * * * * 9333 0 0
+
+S 131 4190 5659 5971 4777 2794 5404 4955 3447 6769 3536 7272 4262 6646 6623 4517 4415 4363 2877 * 2923 131
+ 10 7123 * 2000 415 * 0 9285 1000 1008
+
+V 132 5083 5828 * * 3010 5659 * 1725 * 2647 4814 6283 * * * 5279 4723 2137 7068 * 132
+ 0 * * 1585 585 0 * 9292 1008 1008
+
+S 133 2672 4251 6697 5449 3979 3897 * 2654 * 3468 5786 5251 * 5726 4839 4137 4138 2908 * 4907 133
+ 15 * 6571 * * * * 9247 0 0
+
+T 134 3243 6371 2143 3708 5671 4046 5018 5781 3728 5029 * 3580 5706 5260 4948 3907 3732 5983 * 5323 134
+ 17 6406 * 0 * 0 * 9232 1014 1001
+
+V 135 3056 6531 5849 4454 5747 4093 4646 3281 5097 3438 4550 * 6534 4346 3835 4945 3719 2842 * 4513 135
+ 0 * * * * * * 9223 0 0
+
+L 136 6586 * * * 4363 * 6711 1952 * 1675 1668 * * 6652 * * * 4824 * * 136
+ 15 6620 * 2000 415 * * 9187 1000 0
+
+T 137 3670 5671 5754 4564 4270 3863 * 3988 2197 3366 6501 7328 * 5195 3530 3698 4215 3638 * * 137
+ 0 * * * * * * 9145 0 0
+
+S 138 3032 * 4301 2873 6167 4852 4000 6243 4509 4502 * 5055 * 3868 4323 2107 5376 4017 * 6410 138
+ 20 6167 * 2000 415 * * 9050 1002 0
+
+K 139 2586 * * 3753 5978 1483 5001 6010 3707 5050 * * * 4364 5940 3818 4317 * * 4435 139
+ 0 * * * * * * 8790 0 0
+
+Y 140 4354 5611 * * 2745 5871 * 4830 * 4204 3239 * * 4680 * 5736 * 6341 5561 1066 140
+ 0 * * * * * * 8524 0 0
+
+R 141 3833 * 4287 3877 * * 4777 * 1861 3758 * * * 4873 2285 3881 * 4747 * 3635 141
+ 0 * * 0 * * * 7263 0 0
+
+//
diff --git a/modules/bindings/tests/testfiles/test.seq219 b/modules/bindings/tests/testfiles/test.seq219
new file mode 100644
index 0000000000000000000000000000000000000000..52b76eda49f227d4aa7c14f77ba719a48a3bfc25
--- /dev/null
+++ b/modules/bindings/tests/testfiles/test.seq219
@@ -0,0 +1,3 @@
+>Test
+�EM��{���X��NJ��X����������dn��EG���$�����+��~����h����S��^���C���X��~܍������<���%�����X����[��
+����E���d��ׄ��[�����F#�m��X���\���f�
diff --git a/modules/bindings/tests/testfiles/testali.a3m b/modules/bindings/tests/testfiles/testali.a3m
new file mode 100644
index 0000000000000000000000000000000000000000..3e2dd453dd151db297723936ebec391d489da2d5
--- /dev/null
+++ b/modules/bindings/tests/testfiles/testali.a3m
@@ -0,0 +1,510 @@
+>ss_pred PSIPRED predicted secondary structure
+CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
+>ss_conf PSIPRED confidence values
+999999999999998873391557999999998639441123987788888856788999999999998735477789999999887650299989899889999999997536679989999999999999999984329
+>Test
+VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
+>gi|118595805|sp|P02185.2|MYG_PHYCA RecName: Full=Myoglobingi|49259352|pdb|1UFP|A Chain A, Crystal Structure Of An Artificial Metalloprotein:fe(Iii)(3, 3'-Me2-Salophen)APO-Wild Type Myoglobingi|145579858|pdb|2JHO|A Chain A, Cyanomet Sperm Whale Myoglobin At 1.4a Resolutiongi|151567563|pdb|2EB8|A Chain A, Crystal Structure Of Cu(Ii)(Sal-Phe)APO-Myoglobingi|151567564|pdb|2EB9|A Chain A, Crystal Structure Of Cu(Ii)(Sal-Leu)APO-Myoglobingi|228311816|pdb|2W6W|A Chain A, Crystal Structure Of Recombinant Sperm Whale Myoglobin Under 1atm Of Xenongi|113374037|dbj|BAF03579.1| myoglobin [Physeter catodon]
+VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFkHLKTeaemkASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK
+>gi|118595767|sp|P14398.2|MYG_GALJA RecName: Full=Myoglobin
+-----NWDKVNSVWSAVEQNITAIGQNILLRLFEQYPESEDYFPKLkN-KSlgelkDTADIKAQADTVLRALGNIVKKKGDHSQPVKALAATHITTHKIPPHYFTKITTIAVGVLSEMYPSEMNAQAQAAFSGAFKNICSDIEKEYK
+>gi|47226106|emb|CAG04480.1| unnamed protein product [Tetraodon nigroviridis]
+VWTDQERAIIDNIFSNL--DYEDVGSKALIRCLIVYPWTQRYFSSFgNLYnaeaiRNNPNVAKHGVTVLHGLDRALKNMDNIKEEYKKLS--ERAALREAARRPRQLCSLTA-----------------------------------
+>gi|5139299|gb|AAD40480.1|AF157494_1 hemoglobin [Myxine glutinosa]
+-TTEGERAAVRASWAVLMKDYEHAGVQILDKFFKANPAAKPFFTKMKdLhtlEdlASSADARWHVERIIQAVNFAVINIEDrekLSNKFVKLSQDHIEEFHVtDPQYFMILSQTILDEVEKRN---------GGlsgegksgWHKVMTIICKMLKSKY-
+>gi|74922327|sp|Q7SID0.1|GLBF1_EPTBU RecName: Full=Globin-F1gi|18655670|pdb|1IT2|A Chain A, Hagfish Deoxy Hemoglobingi|18655671|pdb|1IT2|B Chain B, Hagfish Deoxy Hemoglobingi|18655672|pdb|1IT3|A Chain A, Hagfish Co Ligand Hemoglobingi|18655673|pdb|1IT3|B Chain B, Hagfish Co Ligand Hemoglobingi|18655674|pdb|1IT3|C Chain C, Hagfish Co Ligand Hemoglobingi|18655675|pdb|1IT3|D Chain D, Hagfish Co Ligand Hemoglobin
+-LTDGDKKAINKIWPKIYKEYEQYSLNILLRFLKCFPQAQASFPKFS-tkkSnlEQDPEVKHQAVVIFNKVNEIINSMDNqeeIIKSLKDLSQKHKTVFKVDSIWFKELSSIFVSTI-DGG---------AEFEKLFSIICILLRSAY-
+>gi|157880060|pdb|1SCT|A Chain A, Scapharca Tetrameric Hemoglobin, Co-Stategi|157880061|pdb|1SCT|C Chain C, Scapharca Tetrameric Hemoglobin, Co-Stategi|157880062|pdb|1SCT|E Chain E, Scapharca Tetrameric Hemoglobin, Co-Stategi|157880063|pdb|1SCT|G Chain G, Scapharca Tetrameric Hemoglobin, Co-State
+CGSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDvqkGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAVNHInrKISGDAFGAIVEPMKETLKARMGNYYSDDVAGAWAALVGVVQA-------
+>gi|29692328|gb|AAO89499.1| hemoglobin II [Phacoides pectinatus]gi|197726107|gb|ACH73203.1| hemoglobin II [Phacoides pectinatus]
+-LTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSlFGGLTlaqlqDNPKMKAQSLVFCNGMSSFVDHLDDNDmlvVLIQKMAKLHN-NRGIRASDLRTAYDILIHYMEDH--NHMVGGAKDAWEVFVGFICKTLG----
+>gi|2055266|dbj|BAA19794.1| myoglobin [Aplysia juliana]
+-LSAADAGLLAQSWAPVFANSAANGDSFLVALFTQFPESANFFNDFKGKSladiqASPKLRDVSSRIFARLNEFVSNAADAGkmgSMLQQFATEHA-GFGVGSAQFQNVRSMFPGFVASL--SAPAG--DAAWNSLFGLIISALQ----
+>gi|74096493|ref|NP_001027700.1| globin [Ciona intestinalis]gi|34364572|emb|CAD68147.1| globin [Ciona intestinalis]
+-LTSEQVVLLRSSWQTIGKLGms-NVGLAVLHRLFNDVPETLPFFHSVLSPtqqteievlksnakvvrhasRVGL-----------SIDKIINLLDNGEELVKYLLFLgqvHV-KRSIPRKYFSAMGPVLLSVISAVLEKDLDAPVMQAWATAYGVIEQGI-----
+>gi|54027379|ref|YP_121621.1| hypothetical protein nfa54050 [Nocardia farcinica IFM 10152]gi|54018887|dbj|BAD60257.1| putative flavohemoprotein [Nocardia farcinica IFM 10152]
+--DSRSVALIRTTFKAVAADDagpDELARTFYAILFTDHPQIRDFFP--------AAMDVQRDRLVKAISYALDRLEEPDKLLPFLAQLGRdhRKYGVRREHYAAVADSLKAAVRRCAGTEmWTDEVDRAWDEGLALISDAMI----
+>gi|153873469|ref|ZP_02002042.1| Globin [Beggiatoa sp. PS]gi|152070062|gb|EDN67955.1| Globin [Beggiatoa sp. PS]
+-----NTELIGQSWDKLAGKHEEMVATFYDRFFDKFPHYRKFFPE--------SMEHQLKRMAETIALLARVTHETEVTHPHLVKVgsrHT-GYCLAREDLDNFKTIFVQVVGEYCGDDWNQEYQESWTEAFE--qhiIPYMMH---
+>gi|215764931|dbj|BAG86629.1| globin [Samia cynthia ricini]
+-LTRREIYAVQKSWAPVFANSIPNGAELLRRLFQTFPETKEFFKMIrKLPdeeyIQNPQFRAHVINLMTSLNLAVNNLNQPEVVaamMNKLGESHK-RRQIKERHFGDLKQVIVTMFIEVL--HLDGDTLTAWDKTVTFWYKHI-----
+>gi|340716694|ref|XP_003396830.1| PREDICTED: cytoglobin-2-like isoform 1 [Bombus terrestris]gi|340716696|ref|XP_003396831.1| PREDICTED: cytoglobin-2-like isoform 2 [Bombus terrestris]
+-LTNKEKRIIRETWGVLRANSVKVGVDIMISYFKRFPQHHRAFPPFkDIPaddlLDNKKFHAHCQGIMSTLNDAIDALDDVDLMnaiLHTTGKRHG-RRGQGRQEFIDLKGVVLDAMRGAFGSKFTTEVEVAWDKAIDVLFSKI-----
+>gi|307167439|gb|EFN61015.1| Globin [Camponotus floridanus]
+-MTEKQKRLVQNTWAIARKDEVSAGVAIMIALFKQYPEYQKQFKPFkDVPidelPKNKRFQAHCVNIISAISKLIEQMCDPELMqatLINLIEKHK-NRGQTQEQFENLRQLLAKLFPSLFGKQYTQEAEEAWKKLLDLMYSVI-----
+>gi|254463896|ref|ZP_05077307.1| globin [Rhodobacterales bacterium Y4I]gi|206684804|gb|EDZ45286.1| globin [Rhodobacterales bacterium Y4I]
+-MTDAELEQLRESYSKLKDEAVRDPAFFYDALFRHAPELRQLFRE--------DLEGQGMKFMTTLGVILAKLGDESAVDPHFQELgrkHA-SLGVQISHFAPMEEALVDSLRNALEDDFTPELEALWRRAFEEISARMIQ---
+>gi|15613621|ref|NP_241924.1| nitric oxide dioxygenase [Bacillus halodurans C-125]gi|52000645|sp|Q9RC40.1|HMP_BACHD RecName: Full=Flavohemoprotein; AltName: Full=Flavohemoglobin; AltName: Full=Hemoglobin-like protein; AltName: Full=Nitric oxide dioxygenase; Short=NO oxygenase; Short=NODgi|5822815|dbj|BAA83959.1| HMP [Bacillus halodurans]gi|10173673|dbj|BAB04777.1| flavohemoglobin [Bacillus halodurans C-125]
+TLSQETKQIVKATVPILAEHGEAITKHFYKRMFSHHPELLNIFNQ-----THQKQGRQPQALANSIYAAAEHIDNLEAILPVVSRIahkHR-SLNIKPEQYPIVGENLLAAMREVLGDAASDDVLEAWREAYELIADVFIQ---
+>gi|241959586|ref|XP_002422512.1| flavohemoprotein, putative; hemoglobin-like protein, putative; nitric oxide oxidoreductase, putative [Candida dubliniensis CD36]gi|223645857|emb|CAX40520.1| flavohemoprotein, putative [Candida dubliniensis CD36]
+PLTRSERKIIKDSIPILEYLDIQFGEKFFKRLVKRFPEYKPYFNE-----THLTLLRQPRSFHHCLLEFARNIDDLRPMKDFIMKIaskHV-ARQVSPDQYRVFGQILIGVMVDQFPKEfVDEEFVEAWTMAFRILANILI----
+>gi|254425852|ref|ZP_05039569.1| Globin domain protein [Synechococcus sp. PCC 7335]gi|196188275|gb|EDX83240.1| Globin domain protein [Synechococcus sp. PCC 7335]
+-LAVRQVELVQRSFAKVEPISEQVGKLFYEHLFETRPDFKPLFSS-------TDMETQQRKLMMTLATAVEGLRHPEEIISKVQALgrsHQ-GYGVKAEDYEAIGATLLWTLKEKLGDDFTPEVKRAWEVAFQFLSKIMIN---
+>gi|342859152|ref|ZP_08715806.1| hypothetical protein MCOL_09748 [Mycobacterium colombiense CECT 3035]gi|342133393|gb|EGT86596.1| hypothetical protein MCOL_09748 [Mycobacterium colombiense CECT 3035]
+---ADALRVLRDAFAPGaadsAGDPGGLVHRFYTHWFALDGSVRDLFP--------PEMAAQRLAFGHALHWVYGELvaRRAQEPVAFLAQLgrdHR-KYGVLPHHYDTLRRALLATLRTHLGAAWTDAVDEAATQSLNLITGVMSG---
+>gi|183980669|ref|YP_001848960.1| monooxygenase [Mycobacterium marinum M]gi|183173995|gb|ACC39105.1| monooxygenase [Mycobacterium marinum M]
+---RDALRVLRDAFAPQpdldhKTQSSELVRSFYTNWFSLDSSVRDLFP--------PEMSGQRAAFTRALHWVYSELvaQRAEEPIAFLAQLgrdHR-KYGVQPTQYETLRRALQTTLRSHLGSSWTDSVARAAEQSLNLIVGVMSG---
+>gi|120401655|ref|YP_951484.1| oxidoreductase FAD-binding subunit [Mycobacterium vanbaalenii PYR-1]gi|119954473|gb|ABM11478.1| Oxidoreductase FAD-binding domain protein [Mycobacterium vanbaalenii PYR-1]
+---RESMRILRDALDL-DLGSEALIGDFHTRWFAADLSARDLFP--------PDLEKQRQVFAQALCWLCDELiaQRAEEPVAFLAQLgrdHR-KYGVTQSHYATLQDALLTTLRKALVEQWDRRLAEAVDDVVQLVVGVMSG---
+>gi|119368204|sp|P15161.2|GLB1_PARCH RecName: Full=Globin-1; AltName: Full=Globin I
+-LTLAQKKIVRKTWHQLMRNKTSFVTDLFIRIFAYDPAAQNKFPQMaGMSAsqlrSSRQMQAHAIRVSSIMSEYIEELDSdiLPELLATLARTHD-LNKVGPAHYDLFAKVLMEALQAELGSDFNQKTRDSWAKAFSIVQAVLLVK--
+>gi|340378768|ref|XP_003387899.1| PREDICTED: neuroglobin-like [Amphimedon queenslandica]
+SLTSAQVALIESTWKVVKKDLQGAGNIMFLKLFQIDVSVRDKFPFRDVpyEelEDSESFLKHSLQVMETIDLAITLLlgGEMEKLVEALVDLgmaHA-MQGLKPEDFDHVGEALVHALGVALGKEFNDEAKKAWTLLYSVVTAKMKEGLK
+>gi|241146860|ref|XP_002405154.1| cytoglobin-1, putative [Ixodes scapularis]gi|215493696|gb|EEC03337.1| cytoglobin-1, putative [Ixodes scapularis]
+PLTARQIFSISKSWKAIARAMEPTGIEMFVRLFQEKEDLLDLFEKFqALRtkesqRESMELAQHASVVMTTLDEGINALDNLDYFMsylHNAGRLHY-KIKGfKKEYFWHIEGPFLAAVSDTLGDRYTDNIENIYKITIRFILQTLIE---
+>gi|327360040|emb|CBL51562.1| globin [Branchiostoma floridae]
+PLDAWQRFYLQKSWKTVARKSDQAARTVFLRMLQDNPGLRQKWPRIsLLTeeeiPTSPYIKFLGERIFDCLDYIIDNLGDLDHVIselTKLGRQHS-DMNVmTPEDVWAIEAAFLAGVQECLEDRFTIKYEEIYSRFIVFVIETMVI---
+>gi|255642839|gb|ACU21602.1| extracellular tetra-domain globin [Branchipolynoe seepensis]
+-ISSEQKAAIKTSWAGA--NLQAAGTGFYVHLAADAPAAYAVFN-LGANPHGAKAQAQGLKVMQFVDDCVKSLDDMAAVRDKLEVLahrHT-GYPAKKEYFGPGKACFLAGLADALGAKFTAEAKAAWATFYDIIAISLCQ---
+>gi|327360034|emb|CBL51559.1| globin [Branchiostoma floridae]
+SLSAADKKAVADSWAKMSkPSFQDAGERVFLKLLKK-DSTKAMFKKFkDIPrdrlAGNAALRDHGGKVVQALDDFIKGLDGsGHETVRNVGRIHK-AAGMTNDNINLMKPILLELLDEV-G--CG-DAKAAWDKLWNLFMTVHG----
+>gi|313502|emb|CAA23729.1| leghemoglobin [Glycine max]
+-FTEKQEALVNSSFEAFKANLPHHSVVFFNSILEKAPAAKNMFSFLGDAvdPKNPKLAGHAEKLFGLVRDSAVQLQTKGLVvaDATLGPIHT-QKGVTDLQFAVVKEALLKTIKEAVGDKWSEELSNPWEVAYDEIAAAIKKAM-
+>gi|1170183|sp|P42511.1|LGB_CANLI RecName: Full=Leghemoglobingi|495289|gb|AAA18503.1| leghemoglobin [Canavalia lineata]
+-FSEKQESLVKSSWEAFKQNVPHHSAVFYTLILEKAPAAQNMFSFLSNGvdPNNPKLKAHAEKVFKMTVDSAVQLRAKGEVvlaDPTLGSVHV-QKGVLDPHFLVVKEALLKTFKEAVGDKWNDELGNAWEVAYDELAAAIKKAM-
+>gi|163742519|ref|ZP_02149905.1| putative flavohemoprotein [Phaeobacter gallaeciensis 2.10]gi|161384104|gb|EDQ08487.1| putative flavohemoprotein [Phaeobacter gallaeciensis 2.10]
+-VSADDRTLIHRSVESERMELDHFVPLFYTKFFETCPDVRTFFPN--------DMAGQHEKLLTSLTYIIEALDHpekLSAILKHQGERHR-AIRITDAHFDGFIYSFTSALAETLGPEWSEDTHSAWRVFLTDVALNMN----
+>gi|254474495|ref|ZP_05087881.1| Globin, putative [Ruegeria sp. R11]gi|214028738|gb|EEB69573.1| Globin, putative [Ruegeria sp. R11]
+-VAPADRDLILASVESQKMELDQFVSLFYAKFFERCPDTRPMFPH--------DMSLQEEKLLMSLTHIIEALEHpakLRLILLDQGERHK-ALQINDDHFAGFIDSFTGALKDTLQEDWSEETRQAWLRFLQYVAYQMG----
+>gi|121228|sp|P15447.2|GLB4_GLYDI RecName: Full=Globin, monomeric component M-IV; AltName: Full=GMH4gi|159149|gb|AAA29162.1| hemoglobin IV [Glycera dibranchiata]
+GLSAAQRQVVASTWKDIAgsDNGAGVGKECFTKFLSAHHDIAAVFG-F--SgASDPGVADLGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRhkGYgykHIKAEYFEPLGASLLSAMEHRIGGKMTAAAKDAWAAAYADISGALISG--
+>gi|195110175|ref|XP_001999657.1| GI24641 [Drosophila mojavensis]gi|193916251|gb|EDW15118.1| GI24641 [Drosophila mojavensis]
+-MNSDELAMIKKTWEIPVATPTDSGAAILTAFFNRFPSALEKFP-FrDVPleelPANARFRAHAGRIIRVFDESIRVLgqEGdqekLDEIWTKVAVNHI-PRRISKESYNQLRGVILETLTAVC--NLDDSQQETWTKLVDHVYSII-----
+>gi|62990081|emb|CAI56309.1| haemoglobin B2 chain [Arenicola marina]
+--TTEDRKEVQTLWSEIWSAQftgrrVQVAQAVFEDLFRRDPESKNLFKRVNVdDMNSPEFHAHCIRVVNGLDTVIGLLDDPDTLKSQLEHLaqqHKERDGIHKTHFDEMSHAFGAVMPQVS-SCFNP---DAWNRCFGSIATKIASL--
+>gi|13810245|emb|CAC37410.1| globin [Sabella spallanzanii]
+--SMEDRQEVLNAWEALWSAEytgrrVMIAQAAFQKLFEKAPDSKALFTRVNVdNIGSPQFRAHCIRVTNGFDTIINMAFDTDVLEELLTHLgnqHTKYQGMRAAYLTHFRESFAEILPQAI-PCFNT---AAWNRCITAMQDKIGAS--
+>gi|34447132|dbj|BAC84992.1| globin D2 precursor [Haemadipsa zeylanica]
+--SIEDIRDIQHDWQFTWGDAsldarIVFGQAVFKKLIELDSSVVEPLKGVHVeDPNSLTFKNHVLRVLNGLDNLINLFDEQGVLVSQLNHLsqqHKERAGVNAAHFKAFARAFIDVLEVSG-NCPNL---DAWKGCLAALGHRISLQ--
+>gi|299757081|emb|CBN88274.1| hemoglobin [Carcinus maenas]
+-LTLRHRTAIYRTWDLVRPNPKLHGINLFLTMFQEEPVLQTRFKGFaGKSieelKNSKRLAAHGTTVVMAITAMVDNLEDVSVLVELLKNTganHR-DRGVPKGDFELLAPVLVRFLKDNLGSAWSPVAEEAWTQAMKVINAVIFTSY-
+>gi|156405932|ref|XP_001640985.1| predicted protein [Nematostella vectensis]gi|156228122|gb|EDO48922.1| predicted protein [Nematostella vectensis]
+PLSVAQKYLVRETWETIEQHSKAVGKKTFLrmfymssidfiysvvmeskgskdirvlglelafddvknsyrtwRFFEMNPDYQKLFPEFaTLDqvelEQANALHGHAKRVMKAVENAVSAMDDAESFAAYLENLGARhkARALKPAYLDAMQVAYTDTIQDLLKTQWTDGTAEAWNKLFRFIADTMKHG--
+>gi|114765375|ref|ZP_01444490.1| probable bacterial hemoglobin [Pelagibaca bermudensis HTCC2601]gi|114542218|gb|EAU45248.1| probable bacterial hemoglobin [Roseovarius sp. HTCC2601]
+--DNATKQQVLSSALRLRLASSALTRDFYDRLFDRAPELRAMFPA--------DMSAQSDKLFDMVLVLVQSLDHLQMLVAEIEALgvrHH-EYGVTEEQYALVSEVLLDTLEHHV-ADWSEVDRKAWALLLGYVCDLMIT---
+>gi|67463862|pdb|1X46|A Chain A, Crystal Structure Of A Hemoglobin Component (Ta-Vii) From Tokunagayusurika Akamusigi|409321|gb|AAB27064.1| hemoglobin component VII [Tokunagayusurika akamusi=midges, 4th-instar larva, Peptide, 150 aa]
+DMEAGDIALVKSSWAQIHD----KEVDILYNFFKSYPASQAKFSAFagkDLEslKDTAPFALHATRIVSVINEAIALMGVaenrpaLKNVLKQQGINHK-GRGVTAAHFEEFETALEAFLESHA--SgYNAGTKKAWDSAFNNMYSVVFP---
+>gi|321471887|gb|EFX82859.1| hemoglobin [Daphnia pulex]
+-LDCFDHSIIRNTWDQAKKNG-EFAPQVLLRFIKAHPEYQQMFGKFaSVPHynllRNGDFLAQAYTISAGLNVVIQSLSSQELLAAQFNLLgsaYQ-PRGVTPAMFEEFSVILEQVLEETLGSTFNVEARKAWNKGMVAIIAGIS----
+>gi|259418086|ref|ZP_05742005.1| globin [Silicibacter sp. TrichCH4B]gi|259346992|gb|EEW58806.1| globin [Silicibacter sp. TrichCH4B]
+-LHQIDAQLVKGSFRQVFARKAALTDKFYEYLFLEMPDTKAMFTG--------DFSHQKEMFASVLAAGVRSLGQDAEllaLIDRLLLRHR-HLGLTSGHMYMAQRALLLAFREVMGPHLTAAEVSAWGAAIRRLCQTLAA---
+>gi|99082334|ref|YP_614488.1| globin [Ruegeria sp. TM1040]gi|99038614|gb|ABF65226.1| globin [Ruegeria sp. TM1040]
+-LRQIEVQLIKVSFNRVFAQKAALAEKFYHHLFLELPDAEVMFTR--------DFSHQTEMFARVLTTGMQSLGRDREmmvLVDDLLQRHK-HLGLTLDQMYTAQRALHLAFCEVMQAELTAAEVSAWDNAIGRLCRALAA---
+>gi|86137140|ref|ZP_01055718.1| globin domain protein [Roseobacter sp. MED193]gi|85826464|gb|EAQ46661.1| globin domain protein [Roseobacter sp. MED193]
+---------MRSSFPTIFARKAELADRFYSHLFVHLPEVESLFGD--------DFSKQKEMFAAMLTYCLKGVANSQSlpqARAGLVKVHA-RFNLGPREMELAGKAVMAALEDVLGNDLSTKQREIWEQAISGVMQLLLA---
+>gi|301122887|ref|XP_002909170.1| Nitric oxide dioxygenase (Pi-NOD1) [Phytophthora infestans T30-4]gi|262099932|gb|EEY57984.1| Nitric oxide dioxygenase (Pi-NOD1) [Phytophthora infestans T30-4]
+PMSAKTIAILKATAPVVQEHGTEITSTMYGTMFSEFPEVQNLFNMShhRVAgatKggAPPGVSRQATALANAVIGFAANCDQLGNLgdaVPRMVHKHV-SLDIRAKHYPIVGGCLLRAIKTVLGDAATDEIIDAWKEAYWFLADLLI----
+>gi|114799562|ref|YP_759630.1| globin domain-containing protein [Hyphomonas neptunium ATCC 15444]gi|114739736|gb|ABI77861.1| globin domain protein [Hyphomonas neptunium ATCC 15444]
+---------iILSTFERAAQACADPAPLIYARLFELRPDFKPLFDM----DTDGGVRGS--MLETCFEAILGVIEGASSQrVIISAARfsHG-GYGVVDEEFDIMFASIRDVFRDLLGARWTGTEEAQWAILLKEIAAis-------
+>gi|8101728|gb|AAF72633.1|AF258616_1 hemoglobin P polymer precursor [Parartemia zietziana]
+-ITDAEKQLVQESWELLKPDLMGLGQKVFGRIFTKNPEYQTLFTRvgFgDTplTqlMANPAYGAHLIKVMRSFDFVIQNLGKPKTLLAYLKNVGADhiARNVERRHLQAFSESLIPVMQNELKAKLKPEAVAAWRKGLDRIIGVID----
+>gi|4020136|gb|AAC96002.1| hemoglobin T1 polymer precursor [Artemia salina]
+-ITDAEKALVQESWDLLKPDLLGLGRKIFTKVFTKHPDYQILFTRtgFgDTplTklDDNPAFGTHIIKVMRAFDHVIQILGKPKTLMAYLRSVGADhiARNVERRHFQAFSNALIPVMQHELKAQLRPDAVAAWRKGLDRIIGIID----
+>gi|291238614|ref|XP_002739227.1| PREDICTED: Globin D, coelomic, putative-like [Saccoglossus kowalevskii]
+-LTKEQKDTLIQTWQNLHADLERIGMLMFMGLFEHNPEIKEFFVGADsrdMKteelRYNEKLQEHGIRVMGLVEKIISSMGfedeKIDQMVVDLGKRHL-GYDVHIPFIDLFGRQFVFAIKPTLHTHWTANVEEAWTQLFKYIGYLMRYGYH
+>gi|57914327|ref|XP_555006.1| AGAP008434-PA [Anopheles gambiae str. PEST]gi|55237255|gb|EAL39570.1| AGAP008434-PA [Anopheles gambiae str. PEST]gi|85813752|emb|CAJ65692.1| globin 2 [Anopheles gambiae]
+-LTASEKITLFSAWGLIRKDLDVHGRNVLLLLFHKHPRYIAYFD-FtDDPnaqslVDNKSLYDQAIHVFKAVGALIEyGFKDPVLFdatLRKITRRHK-DRPVYTEDILTIGEVLLNYLEQALGRQMSDSLPDAFWKLFQTIAGRFP----
+>gi|284041096|ref|YP_003391026.1| nitric oxide synthase NOS [Spirosoma linguale DSM 74]gi|283820389|gb|ADB42227.1| Nitric oxide synthase NOS [Spirosoma linguale DSM 74]
+-LTPDMIRQMRQIGDELSANARVIGTDFYHALFQTHPEIIPYFNR-------TDLDSLTEHLMLAIGFLVRSLDNGLDItheLRELSQIHT-NFSVPPDAYPKLVDPLLTVLRKHVP-GFGTEQEQAWVILLNRVTNVLR----
+>gi|254426005|ref|ZP_05039722.1| Nitric oxide synthase, oxygenase domain protein [Synechococcus sp. PCC 7335]gi|196188428|gb|EDX83393.1| Nitric oxide synthase, oxygenase domain protein [Synechococcus sp. PCC 7335]
+-LPPALVQKMADSWQYFAPRKNEMGVEFYQTLFERYPQVLPIFGR-------ADMDYLSTHLFQSLEFIFLCLAEGSTerLmkeLRHLGRLHG-NAGVPSFAYGAISEVMISMFEKYVP-GFDEQLKEAWQVLIARVSNVIK----
+>gi|312385086|gb|EFR29666.1| hypothetical protein AND_01190 [Anopheles darlingi]
+PLTAKQKYTMVASWKGISRAMETTGITMFIKLFEEHADLLNMFAKFrELKTkeeqaTSEELQEHANKVMNTLDEGIRGLDDLDTFFEFIHQVgasHRRIPGFKQEYFWRIEEPFLTAVSTTLGDRYTQNVEGIYKLTIKFIIETLVAGY-
+>gi|74934410|sp|Q8T7J9.1|GLB_YOLEI RecName: Full=Globingi|19880109|gb|AAM00251.1|AF361744_1 hemoglobin [Yoldia eightsi]
+SFSAAQVDTVRSNWCSMTADIDAAGYRIFELLFQRNPDYQSKFKAFkGLavSalKGNPNAEKHIRIVLGGLGRILGALNTpeLDVIYKEMASNHK-PRGVMKQQFKDMGQAIVTALSEiqsKSGGSFD---RATWEALFESVANGIG----
+>gi|321473288|gb|EFX84256.1| hypothetical protein DAPPUDRAFT_223072 [Daphnia pulex]
+SygggygggeknkftegssgtsplmniLSENDISVLVNSWHILKKR-SDFAPKVFMRYFKAKPEAQKLFSEFaNVSvtdlPNNHDFLNAAYSCISSLEFILPHLRFqHPERCPALTDLK-NKYSV--VDLKRFVPIWMAAMQEEMGNAYSNEVRDVWKKAFSAFTDY------
+>gi|321457980|gb|EFX69056.1| hypothetical protein DAPPUDRAFT_301206 [Daphnia pulex]
+-rsLSDSDINLIVSSWNFLKKRLSSFAPKVFIGYLEARTDSKKMFPDFaHVNiaelATNVEFRSRACNCVASLNYIIPHLKRsFPVlQCPALKNLK-TKYNQHiD--iLKSLGIIWVKAMQEELDKk-iFTDDVRVVWKKLFSVLKEH------
+>gi|50897135|dbj|BAD34601.1| hemoglobin chain I [Calyptogena kaikoi]
+-VSASDIKNVQDTWTKLYDQWeAVHASKFYNKLFKDNEDISEAFVKAGT-GSGIAMKRQALVFGAILQEFVENLSDPTALSLKIKGLcatHK-TRGItNMELFAFALADLVAYMGTT--ISFTAAQKTSWTAVNDVILHQMSSY--
+>gi|156392484|ref|XP_001636078.1| predicted protein [Nematostella vectensis]gi|156223178|gb|EDO44015.1| predicted protein [Nematostella vectensis]
+-MTYEQKYLIRETVDNRECVNEkdflawRYVCELAAIFLNMHPGLQTYFSEFKhIKIDNiNGSHGHPRRLLMAIDNAVTALGDSDSFSAYLVELGRrhhgMNFRPGPTHFNDLRKCFLSVIKEILATAslWDFQVEEAWNRLFDSITAMML----
+>gi|298705122|emb|CBJ28565.1| hemoglobin [Ectocarpus siliculosus]
+---------VKRNWAMISEGPETQGsfngastslvalyDTFFARLFLLEPSMRSMFGD--------NMIRQSKFLVGLVNIIVKMEDMLKQGLSPLYSFAdrSVAMGARPEHYEVIAEVLPIALEACAGEGvWTPDIAGAWRDVMSFA---------
+>gi|212659295|ref|NP_001129874.1| hypothetical protein Y57G11B.97 [Caenorhabditis elegans]gi|189309807|emb|CAQ58126.1| C. elegans protein Y57G11B.97, partially confirmed by transcript evidence [Caenorhabditis elegans]
+-ITERQKHIFTETFPVIFKEYKRNGLVLFAKYFSEFPHYKNIWPQFrTLQdsalLASNELANHCSVYMSGLKEIVEVMDDEEKLtyfMARIARSHV-KWNINKYHITNMLEGVDVVLQRSFGDKLTDEIVNAYHTLYDVIGNLLD----
+>gi|150866030|ref|XP_001385495.2| hypothetical protein PICST_32831 [Scheffersomyces stipitis CBS 6054]gi|149387286|gb|ABN67466.2| hypothetical protein PICST_32831 [Scheffersomyces stipitis CBS 6054]
+HLTTSEISLIRYTWNKMLLDDpiekqstfrnipgaypveqeipkhkqpatsaSSiasslFCRQFYDNLLMSKPDLEEMFP---------SIRHQAVQFAGVMAMTISQLEDLTlmdEYLMKLGKRHSRVLGIGSDHFELMGEVLILTFQERFGTRFTQELAVLWIRLYLYLANTL-----
+>gi|312115464|ref|YP_004013060.1| globin [Rhodomicrobium vannielii ATCC 17100]gi|311220593|gb|ADP71961.1| globin [Rhodomicrobium vannielii ATCC 17100]
+---PNQLAALREFFSNIESDLPEIVSLMYERFFEAVPEAASLFKG--------DFAAQQMQFTSMLRSTIAltrssqlwPVDAeaGRASLPEIEYLglrHA-CVGVQPEHFAAMKWALARTLAEMYPRDFDRDIEDALSFIFDVVARA------
+>gi|149247543|ref|XP_001528180.1| hypothetical protein LELG_00700 [Lodderomyces elongisporus NRRL YB-4239]gi|146448134|gb|EDK42522.1| hypothetical protein LELG_00700 [Lodderomyces elongisporus NRRL YB-4239]
+-LSPVELHNLRTSWSKT--NQKEFFDKLYPNLLDQNRSLRRIFNNDD-----FVVKHHLEIFADCLQFVISNVQDASLVdeflYQFVQENQR-FASMAVQYLEPMGNAFITTFKQVLNTSWTSVLELVWIKVFVFIANSI-----
+>gi|321471887|gb|EFX82859.1| hemoglobin [Daphnia pulex]
+-LTRPQIRNVQRSWESMKSGRNSLVSAIFIKLFKETPRVQKHFAKFaNVPvdslRGNGDYIQQVALVADRLDTLISAMDDQLQLlgnINYLKYTHA-KRSIPRKTWEDFARLLVELLPTR---GVSASDVESWKGVTTVLVNGIA----
+>gi|321477132|gb|EFX88091.1| hemoglobin [Daphnia pulex]
+-LSGHMIGDVQRSWENIRGGRNAMVSDIFIKLFKETPRIQKFFAKFaTVAadalPGNADYEKQVALVADRVDTIISALDDKLQLlgnINYMRYTHT-ARSIPRGAWDDFGRLLVQSLAAK---GVSSDDLDSWKSVLSVLVNGIS----
+>gi|321477133|gb|EFX88092.1| hemoglobin [Daphnia pulex]
+-LTPQQIKEVQRTWASMRSDRNSIVSAIFIELFRENPRSQKYFAKFaSLPleslTSNTDFNQQVALVANRLDTIISAMGDKLQLlgnINYMRYSHEQriysPRNAVRDRFEDFGRLLLDTLIAK---GIAGDDLDSWKSVLKIFIDGIA----
+>gi|56753437|gb|AAW24922.1| SJCHGC09035 protein [Schistosoma japonicum]
+-INDEQLLLLQSSWSIVKQHIEKIGVITFLGIFEQHSDFRDAFTEFRKrkfvdVKHDPAMQVHGLRVLSIVDKMITRLPktdDIELKLMTIGSKHC-RYVPTIGLISSVSDQLWGAIEPVLKeeGSWSDELAVTWKTVLDYLTKT------
+>gi|332532408|ref|ZP_08408286.1| hypothetical protein PH505_af00140 [Pseudoalteromonas haloplanktis ANT/505]gi|332038051|gb|EGI74498.1| hypothetical protein PH505_af00140 [Pseudoalteromonas haloplanktis ANT/505]
+------QSALLNNLTIIKPNFHAFTAKFHSKLAQSSIEMNYP--------TALQFNEKSFTLFCVLERIVKHLDKPASVAPFLAHHlmYLKKSGASHSDIALLSNAFYETLEEHLGKHFTTESQLAWKKALRYF---------
+>gi|308480175|ref|XP_003102295.1| CRE-GLB-30 protein [Caenorhabditis remanei]gi|308262221|gb|EFP06174.1| CRE-GLB-30 protein [Caenorhabditis remanei]
+HLTPIDREILNKSWAIVSKDMQQVAVNIFQMIFEQAPDAKLMFSFMmkDYkeDKKSNEFIFHAVRFLQVIESTMTHLDDPSqldAVFLNLGKIHAkheEQLGFSAHYWSVFKECVLFHFRKAMKahNKFSkhkemsfAEIDSaiiLWREVLRFIIDRMKVGY-
+>gi|311279880|ref|YP_003942111.1| hypothetical protein Entcl_2577 [Enterobacter cloacae SCF1]gi|308749075|gb|ADO48827.1| hypothetical protein Entcl_2577 [Enterobacter cloacae SCF1]
+-------ELFNNSYARILPgdKGDRFFTHFYTLFTKSTDDETSAH------------svarrLEKQKIiyktf-FYmlsvanth-------IVA---DYLVKITRESNpQNLNLPPSAYALWRRAVLQTVRDLD-PECDEEIITAWAIVLAPGLEFMRR---
+>gi|94501577|ref|ZP_01308094.1| hypothetical protein RED65_08344 [Oceanobacter sp. RED65]gi|94426260|gb|EAT11251.1| hypothetical protein RED65_08344 [Oceanobacter sp. RED65]
+-------DLVFQSFGRSC-NNPAFFEDFYDNFMSKSDQIRAMFKQT-------NMEAQRGLlrggIMWLVMHARGMPD---NKIRALGESHSrKHMNIHPSHYNDWVDALMATLHKHD-PEFNDHMESVWRETIRPSIDLIKSMY-
+>gi|62990085|emb|CAI56311.1| intracellular haemoglobin [Alvinella pompejana]
+----DNIAAVR-------GDVSTHAMNIFVEYFKKFPQHQNAFADYKgKDPeslkSLPKFKTHTTKVVSKLLDIVEKASDSGalqSNCTTLAKMPQ-HKGLNQQQFADLGAVLVPYLQKALGGACD---SAAWEQAYN-----------
+>gi|150865287|ref|XP_001384437.2| hypothetical protein PICST_67553 [Scheffersomyces stipitis CBS 6054]gi|149386543|gb|ABN66408.2| hypothetical protein PICST_67553 [Scheffersomyces stipitis CBS 6054]
+-LTASEIKAIQTSWERLQSSNrkhkDHFTSRLYSNLVRSHPQFKTIFDDS------SVLKEHSTLFGEILSFIVLYKHDPEILNDFMYQFiHEnQRfANVTVLYLEPMGESLIDTFKQWLGDSvFTNEFESVWIKTYVFVANSL-----
+>gi|294659323|ref|XP_461690.2| DEHA2G03322p [Debaryomyces hansenii CBS767]gi|199433874|emb|CAG90138.2| DEHA2G03322p [Debaryomyces hansenii]
+-LSGEDIQKLTTCWSGLQANNkyhkDDFITRLFSNLVAANPKLRKVFHSE------SIIAEQSTLFGDLLSFTMLYLDDECTLNQCMNAFlREnPKfVIVGPEYLEPMGSALIVTFRQWLGQGkFNDQIQSLWVQVYLYIANCL-----
+>gi|82655305|emb|CAI26300.1| hemoglobin [Biomphalaria glabrata]
+-LSDNDREAIDSSWKKLRSGAggrRNAGIKLVQWMLRTIPNMRDRFNKFDAKqsdaalQRDPEFLAQVDRILGGVESLVNNVDDPVALKAAIDRLadaHLsFDPRVGLDYFGPLQTYIHDYIEEALGVGADSDEAKGWTDLFAAFNKVLKE---
+>gi|122733|sp|P06148.2|HBF1_URECA RecName: Full=Hemoglobin F-Igi|162545|gb|AAA30331.1| F-I globin precursor [Urechis caupo]
+-LTTAQIKAIQDHWFLNiKGCLQAAADSIFFKYLTAYPGDLAFFHKFSsVPlyglRSNPAYKAQTLTVINYLDKVVDALGGNAGALmKAKVPSHD-AMGITPKHFGQL----LKLVGGVFQEEFSadPTTVAAWGDAAGVLVAAM-----
+>gi|339250872|ref|XP_003374421.1| putative myoglobin [Trichinella spiralis]gi|164521930|gb|ABY60753.1| unknown [Trichinella spiralis]gi|316969271|gb|EFV53396.1| putative myoglobin [Trichinella spiralis]
+------CDLIKEQWAKIE-INNENGGELYKWFFTEKPEFATYFQLDNVNPaeiaKTERFQALGKAFLERVKKLVNVCDDEKKLKSEVTILkneHD-PRNVGLDQLKQVRPILVKFLQSKTG--LTDQQTSAWDEMLKKFEA-------
+>gi|91224749|ref|ZP_01260009.1| hypothetical protein V12G01_01110 [Vibrio alginolyticus 12G01]gi|91190295|gb|EAS76564.1| hypothetical protein V12G01_01110 [Vibrio alginolyticus 12G01]
+--------VFNDSYERCT-SDQEFFDLFYKNLWSKSANFRQKFDGI-------DMHQQVRMLRGSIVFFMMADTstEAHKMVEKYGKKHAsADIGIEPQDFDVWLESLLETVRQCD-SGYDADVETAWRTCFKTGLEVMKQEC-
+>gi|88813510|ref|ZP_01128744.1| hypothetical protein NB231_06775 [Nitrococcus mobilis Nb-231]gi|88789223|gb|EAR20356.1| hypothetical protein NB231_06775 [Nitrococcus mobilis Nb-231]
+--------LFNDSYERCIDnpNPPGFLQRFYKVFLSSSEEVAEKFKNT-------DFEKQTRVLKASLYYLMLScNGspEAMAHLRRIACLHSrKQLDIRPELYDLWLASLLQAAREYD-PRFDQQTETAWRQVLSHGIDFMKSRY-
+>gi|312095861|ref|XP_003148491.1| globin family protein [Loa loa]gi|307756344|gb|EFO15578.1| globin family protein [Loa loa]
+-LSKSQRITIENSWKRATKsNaREQVGIQLFGRILTARPEMKHLFGLQKIPEgrlkYDPRFRRHAIVFTKSFDYIVKNVAykeKLEQHFQALGERHTmlQGRGFNPEYWDTFSDCMRQTVS-LWGRDKDHKTTNTWQMLISFVLQNMK----
+>gi|339234991|ref|XP_003379050.1| putative globin [Trichinella spiralis]gi|316978322|gb|EFV61323.1| putative globin [Trichinella spiralis]
+-LTKSQRQNVVRSWEKV-PNKRALGEEIYIQIFMHKPMLKSLFPFRTVPvdqlRNNALFTRQAAIFADFIDCVVGYLaiDNG-NLIMELSERvgvnHAlmTSVNFDPEWWVLFANSVLDCIRQYCEPQficlpisrhITRKIMIAWRILLKEVVDRMSEAF-
+>gi|212642107|ref|NP_001129775.1| GLoBin family member (glb-18) [Caenorhabditis elegans]gi|193248121|emb|CAQ76478.1| C. elegans protein F52A8.4b, confirmed by transcript evidence [Caenorhabditis elegans]
+----YEKELLRRTWSDEFDNLYELGSAIYCYIFDHNPNCKQLFPFIsKYqgDewKESKEFRSQALKFVQTLAQVVKNIYHMERTESFLymvGQKHV-KfadRGFKHEYWDIFQDAMEFALEHRLS---------------------------
+>gi|221117199|ref|XP_002161790.1| PREDICTED: similar to globin X [Hydra magnipapillata]
+PLSHSDIYALQGTWLKVKARWFEICTIAFERWLVADPEIRTLFKGLpdDLHSkdlmKHNSLKKHACMIEKTLDQVLLILDKKKEFvntLIELGKLHY-RLGANHKYTKGLALSLQCAVCQEV--DIDISEESAWDSLFRFMLGLL-----
+>gi|325180197|emb|CCA14598.1| conserved hypothetical protein [Albugo laibachii Nc14]
+----------------------------------NAPELKPVFKT----------SKHARNvvlqhIVGGLRTMLAHDVHIER-VRALTRTHL-QFGVKMEYFDLLGQAVIFSMRHCSGSHWSSEIEEAWRRLYGHCSVIL-----
+>gi|29841203|gb|AAP06216.1| similar to trematode hemoglobin from Paramphistomum Epiclitum [Schistosoma japonicum]
+-VTQSQVDHlITELEPHVDteAHKLELGLKVYECFLKDRPEYICKFSRLqGLDAsnvaQSEGIKYYARTFVAAFVPMIQAAANKcelDKLCLEEAILHR-TRPVDEKIFQDSLPIFIKIFNNLI---KDQQNKETMSKILTYTFTMIGSQ--
+>gi|308506641|ref|XP_003115503.1| CRE-GLB-25 protein [Caenorhabditis remanei]gi|308256038|gb|EFO99990.1| CRE-GLB-25 protein [Caenorhabditis remanei]
+-----DFFTLKNWWKTVDRKRVEASGYMFSKYLNDFPENKNFYPKLkNVNaatvdmsCSDPGFESMALQYLKIFDDVITAVEekpgDVQTAcdrLSAVGKMHRQKvSGMTATQFQNMEEPFIQMVKYILSDRFNEKAEMLYRKFFQFCLKYLLEG--
+>gi|268552639|ref|XP_002634302.1| Hypothetical protein CBG17640 [Caenorhabditis briggsae]
+-LSSDEMQAVRDSWKRA--KEREIGKHILQALIERKPQFKDYFGIHvDEKKddvfSCREFQLQSHRIQNFLDTAVSSL-----GFCPIGNIHQMAYRIGQIHF-------------------------------------------
+>gi|339237741|ref|XP_003380425.1| putative globin [Trichinella spiralis]gi|316976730|gb|EFV59959.1| putative globin [Trichinella spiralis]
+-LNPKEVILTRNVWAALKeKHQHLVGMEIFRQIFNRRPDLKSLFGVSALDtemaLNSTRLHRHTMIFQDVIDILMVNISNVDVnIADSLIDLgaqHWvlTKRGFDPAYWLIFGDVLFDLVENvtrKLPSR--KRSTNAWRKTIAFMLDCMQIGY-
+>gi|319789164|ref|YP_004150797.1| hypothetical protein Theam_0183 [Thermovibrio ammonificans HB-1]gi|317113666|gb|ADU96156.1| hypothetical protein Theam_0183 [Thermovibrio ammonificans HB-1]
+-IREKDVQNLRFLGNILLPYKKEFADAFYDNLM-KFEDIKEYIPE-------EKLQRLKTTIQEWYEKLFsGKYDSEYlLYLLRIAKVHV-EEGIPPHYIIVamnfVSRFCTRRIaefFAKKAREFfehyrkeqdvvcdparaeilegfvleevfeRmEDLTRSLRKILALNEDVLVSYYV
+>gi|301061358|ref|ZP_07202138.1| conserved hypothetical protein [delta proteobacterium NaphS2]gi|300444535|gb|EFK08520.1| conserved hypothetical protein [delta proteobacterium NaphS2]
+-FTDQDEVLLKKMAELFMPIHDRFADDFYRYLQ-EDDYTAGYFRT-------DAaVNRRKETILQWLNEILtSKYDNRLlIKLVRIGKIHV-KIGLDGHYVNAamgfIRRYFQEHLNQVVSEPAKrEIMIETLDKALDISLDIMTSSYR
+>gi|336324532|ref|YP_004604499.1| hypothetical protein Flexsi_2317 [Flexistipes sinusarabici DSM 4947]gi|336108113|gb|AEI15931.1| hypothetical protein Flexsi_2317 [Flexistipes sinusarabici DSM 4947]
+-VKESDLKELGSIWEQMSKYSDEFTTDMSAFVV-KNFKLPETYST-------EITDEYKAMLGKLYERVLsGRFNNDYvSFLIKFSEFNL-AYSINQEMVNSlisyARSWIHEKIFQNIPDDFQrKGILMMFHKIMDITGDIIISTYY
+>gi|289549194|ref|YP_003474182.1| hypothetical protein Thal_1426 [Thermocrinis albus DSM 14484]gi|289182811|gb|ADC90055.1| conserved hypothetical protein [Thermocrinis albus DSM 14484]
+-WTAEDEENLRSLSHLVPSWVEEFLES---------------IRK-------DEhDERCFQSIREWLIATFsGPHDERYvRKIHNMLQEHL-KAGCTLHHLQVllssVREFLLDKLTAQLGYSHQrDSLFRSVEKTLDLSLSIMLLSQK
+>gi|238638045|gb|AAZ82851.2| Hypothetical protein B0361.4 [Caenorhabditis elegans]
+--------RIQQCFKAA---KPSIGDAIMKRAAASRAEMRTMLSKMN----EKQIECLGKQMFELITDAVENADKSEKVLTHARQLggtYAslCPLGFRPDLFAPLADAAIAECVKLDGVHKRCETLSAWSQLFSALFTGVRDGY-
+>gi|17509143|ref|NP_492188.1| GLoBin family member (glb-26) [Caenorhabditis elegans]gi|3880027|emb|CAA99921.1| C. elegans protein T22C1.2, confirmed by transcript evidence [Caenorhabditis elegans]
+-LNSYQKSIVRNAWRHMSQKGPsNCGSTITRRMMARKSTIGDILDR-------STLDYHNLQIVEFLQKVMQSLDEPDKIsklCQEIGQKHA-KYrrskGMKIDYWDKLGEAITETIREYQGWKIHRESLRAATVLVSYVVDQLRFGY-
+>gi|320170061|gb|EFW46960.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
+------HAVMMATWKEATdaDSGERVLNGFFTRLQVNDPQASHIYETAD-----ARMRK--VIIWSAVTKILDCLENPRSLrkeLKPLAQSHA-HMGVTPQMIDAFGTSLCAVLKEVLQEKYTTEVDVVWRRCFRLFAAQ------
+>gi|320164492|gb|EFW41391.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
+------HAVLHASWVKATegDNGDAVLTGFLVRLQSNNPQATLIYERAD-----PRMRK--VIIWTAVSKILDCMQNPRSLrkeLKPLGQSHA-KMGVTGPMLDSFGVALRAVLKDVLKARYTTETDMVWRRCYRLFSVQ------
+>gi|170573273|ref|XP_001892405.1| hypothetical protein Bm1_04635 [Brugia malayi]gi|158602064|gb|EDP38764.1| hypothetical protein Bm1_04635 [Brugia malayi]
+-LSEIQQELIRQSWQTISAKlevnEQNFGFFVYRRVFEHNPLLKRAFHVeeYDLLDSIP--REHSifrqmRLFTNLIALAVRHDNELETeIAPAVFRYGQRHYKFAAEYFNegtvrLFCSQVVCAVADLLEVDIDPACMEAWIDMMRFIGCRL-----
+>gi|157278270|ref|NP_001098237.1| cytoglobin-1 [Oryzias latipes]gi|82122237|sp|Q575T0.1|CYGB1_ORYLA RecName: Full=Cytoglobin-1gi|62176936|emb|CAG25610.1| cytoglobin-1 [Oryzias latipes]
+PLTDKERVMIQDSWAKVYQNCDDAGVAILVRLFVNFPSSKQYFSQFkHIeDaeelEKSSQLRKHARRVMNAINTLVESLDNsdkVSSVLNAVGKAHA-IrHKVDPVYFKILSGVILEVLGEAYPQVMTAEVASAWTNLLAILCCSIKAVYE
+>gi|147903264|ref|NP_001089155.1| globin Y [Xenopus laevis]gi|62176948|emb|CAG25618.1| globin Y [Xenopus laevis]
+DLTAADIENINEIWCKIYANPEESGKTVVIRLFTTYPQTKVYFKNLkNIaTleemQVNPGIRAHGKRVMGALNQVIQNLNdwEvVSSALTHLAQRHQ-DvHKVGVNNFQLL-fLVILTIFKEALGADFTPEHCKSWEKLFSITYNFLDSCYT
+>gi|45360951|ref|NP_988859.1| hemoglobin subunit beta-1 [Xenopus (Silurana) tropicalis]gi|122524|sp|P07429.2|HBB1_XENTR RecName: Full=Hemoglobin subunit beta-1; AltName: Full=Beta-1-globin; AltName: Full=Hemoglobin beta-1 chaingi|213983|gb|AAA49659.1| beta globin protein [Xenopus (Silurana) tropicalis]gi|56971743|gb|AAH88022.1| beta globin [Xenopus (Silurana) tropicalis]
+NLTAKERQLITGTWSKI--CAKTLGKQALGSMLYTYPWTQRYFSSFgNLsSieaiFHNAAVATHGEKVLTSIGEAIKHMDDIKGYYAQLSKYHS-EtLHVDPYNFKRFCSCTIISMAQTLQEDFTPELQAAFEKLFAAIADALGKGYH
+>gi|4929993|pdb|1CH4|A Chain A, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v)gi|4929994|pdb|1CH4|B Chain B, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v)gi|4929995|pdb|1CH4|C Chain C, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v)gi|4929996|pdb|1CH4|D Chain D, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v)
+HLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFgDLsTpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHC-DkLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKVLASVSTVLTSKYR
+>gi|110825993|sp|P02209.2|GLB3_MYXGL RecName: Full=Globin-3; AltName: Full=Hemoglobin IIIgi|5924295|gb|AAD56539.1|AF184047_1 hemoglobin [Myxine glutinosa]
+-LSEGDKKAIRESWPQIYKNFEQNSLAVLLEFLKKFPKAQDSFPKFs--aKkshlEQDPAVKLQAEVIINAVNHTIGLMDKEAAmkkYLKDLSTKHS-TeFQVNPDMFKELSAVFVSTM-GGK---------AAYEKLFSIIATLLRSTY-
+>gi|118572332|sp|P0C227.1|GLB_NERAL RecName: Full=Globin; AltName: Full=Myoglobin
+-LSADQKAAIKSSWAAFAADITGNGSNVLVQFFKDYPGDQSYFKKFdGKKpdelKGDAQLATHASQVFGSLNNMIDSMDDPDKmvgLLCKNASDHI-PRGVRQQQYKELFSTLMNYMQSLpG-ANVAGDTKAAWDKALNAMANIIDAEQK
+>gi|154818214|gb|ABS87592.1| hemoglobin III [Phacoides pectinatus]gi|197320684|gb|ACH68470.1| hemoglobin III [Phacoides pectinatus]
+-LTGPQKAALKSSWSRFMDNAVTNGTNFYMDLFKAYPDTLTPFKSlFeDVSfnqmTDHPTMKAQALVFCNGMSSFVDNLDDHEVlvvLLQKMAKLHF-NRGIRIKELRDGYGVLLRYLED-H-CHVEGSTKNAWEDFIAYICRVQGDFMK
+>gi|121267|sp|P29287.1|GLB_BURLE RecName: Full=Globin; AltName: Full=Myoglobin
+-LSGAEADLLAKSWAPVFANKDANGDNFLIALFEAFPDSANFFGDFkGKSiadiRASPKLRSVSSRIVNRLNDFVGNAADAGKmagMLDQFSKEHV-GFGVGSQQFENVRSMFPGFVSS-V-AAPPAGADAAWGKLFGLIIDALKKAGK
+>gi|327360040|emb|CBL51562.1| globin [Branchiostoma floridae]
+---------LQKSWKTVARKSDQAARTVFLRMLQDNPGLRQKWPRIsLLtEeeiPTSPYIKFLGERIFDCLDYIIDNLGDLDHVISELTKLGR-QhSDMNV----------------------------------------------
+>gi|156390503|ref|XP_001635310.1| predicted protein [Nematostella vectensis]gi|156222402|gb|EDO43247.1| predicted protein [Nematostella vectensis]
+PLDAKETQLVRKTWAILGDRQVEVGKSLFLRFFEEHPTSKDLFPEFrNISnekiAESPALYGHARRVMKSVDNAVASieNVQvYSAYLYELGTRHQ-Tr-QLSEEQLKFMGGAFLFAMRLHLRKEWSRATSKAWEKIFSFMADAMMRGC-
+>gi|198424683|ref|XP_002119119.1| PREDICTED: hypothetical protein [Ciona intestinalis]
+PFTDEELKLLRNSWDEVKKLGmk-EVGLHIFTGLLNAAPSLRTLFYTIdLPdEeeltidvmrenkkvvahatRIAN-----------AISKFIKFLDQPEElekLLTSLGESHA-RRQVDPESFEYVAPVILSVIGGHLKLPSNSPTLQAWVKAYGVLRNGIVSAME
+>gi|316933010|ref|YP_004107992.1| globin [Rhodopseudomonas palustris DX-1]gi|315600724|gb|ADU43259.1| globin [Rhodopseudomonas palustris DX-1]
+SplatFSPADIHRVRTSFDLMWPRSTEMADQFYARLFEIAPDSRTLFRS--------DMTRMKDKFIQTLAVLVGSLDNLTGlyaVAGKLAVDHV-RYGVRPDHYAPVGEALLWSLGRQLAGFWDDDVEQSWRKVYAVISARMIGAAY
+>gi|37521141|ref|NP_924518.1| flavohemoprotein [Gloeobacter violaceus PCC 7421]gi|35212137|dbj|BAC89513.1| glr1572 [Gloeobacter violaceus PCC 7421]
+LmevtAMALQVKLLEQSFEGVKPNAHAFAASFYDNLFSDFPQTQALFAHS-------DMQAQQQKLLASLVLVVENLRQPQVlstALQDLGNRHA-GYGIVPEHYPMVGTSLLKTFETYLGDAWTPEVKQAWVDAYGAITGLMLTGAE
+>gi|307192580|gb|EFN75768.1| Globin [Harpegnathos saltator]
+-MSEKQKKLVQNTWAIVRKDDVSSGLAIMNAFFTRYPEYQDQFKSFkGIPfeelSKNKKFQAHCVSVIAGLSNVIDHIHNpelMEASLINLAERHK-NRGQTREHFQNLRYVLEDLIPSVFGKQYTQEVQEAWKKMFDYLFLILCQ---
+>gi|195054581|ref|XP_001994203.1| GH13816 [Drosophila grimshawi]gi|193896073|gb|EDV94939.1| GH13816 [Drosophila grimshawi]
+-MNNDEVQMIKKTWEIPVATPTDSGAAILTAFFNRHPSSLEKFP-FrDVPlaelPTNSRFRAHASRIIRVFDDSIRVLgqDDaeekLEEIWTKVAVNHI-PRQISKESYNNLKEVVLEVLTAAC--NLNESQVQSWTKLVNHVYDILFKSIN
+>gi|289741211|gb|ADD19353.1| hemoglobin-like flavoprotein [Glossina morsitans morsitans]
+-MNSDEVYEIKRTWEIPATTPTESGVAILIRFFTKYPSNLQKFSTFkDMTldelKNNPRFKAHANRIMKVFDDSIKTLDDncshLEEIWTKIAQSHF-NRQIEKQSFNELKEVILEVLVAAC--NLNDQQTEIWLKLLDFVYEIIFKTID
+>gi|83754459|pdb|2C0K|A Chain A, The Structure Of Hemoglobin From The Botfly Gasterophilus Intestinalisgi|83754460|pdb|2C0K|B Chain B, The Structure Of Hemoglobin From The Botfly Gasterophilus Intestinalisgi|3885490|gb|AAC80435.1| hemoglobin [Gasterophilus intestinalis]
+-MNSEEVNDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFkEIPfddlPENARFKTHGTRILRQVDEGVKALsvDFgdkkFDDVWKKLAQTHH-EKKVERRSYNELKDIIIEVVCSCV--KLNEKQVHAYHKFFDRAYDIAFAEMA
+>gi|327360028|emb|CBL51556.1| globin [Branchiostoma floridae]
+SLSAADKKLVQESWDKVSkPSFADAGERVFLKLFRRNESTKAHFKKFkDIPsdqlAGQAVVRDHGEKVCKVLDDFIKGLDGsGDEAVKKVGRMHK-GLGMSNEQIDQMKGAIIEVLADA-G--F-GDAnyKGAWGKLWDRFMAVHR----
+>gi|336310636|ref|ZP_08565608.1| globin [Shewanella sp. HN-41]gi|335866366|gb|EGM71357.1| globin [Shewanella sp. HN-41]
+GLTEIEKEAITSSFSLINHQEQHFATIFYDCLFDMAPLIKPMFKRDrKLi----------EEHFYMIFCAAVDNIHHLDTirtILLELGARHR-NYGVKVLHFPIVKSALILAIQHELKGQSNASIENAWSHYYDVLAAIILEG--
+>gi|2155297|gb|AAB58934.1| globin XII [Chironomus thummi thummi]
+QFVEDQTEIIRASWNQVKH----NEVDILYSIFAANPDIQARFPQFaGKDlktlKSSSSFASHAGRIVGFFSKITELNPNdsgvsaAKTLINEVAASHK-GRGVSKAQFNAFRVSLTAYLADHV--TWNDNVAQAWEKGLDNVYFVLFSAF-
+>gi|2506460|sp|P02221.2|GLB1_CHITH RecName: Full=Globin CTT-I/CTT-IA; AltName: Full=Erythrocruorin; Flags: Precursorgi|540255|gb|AAA80189.1| hemoglobin I precursor [Chironomus thummi]
+GPSGDQIAAAKASWNTVKN----NQVDILYAVFKANPDIQTAFSQFaGKDldsiKGTPDFSKHAGRVVGLFSEVMDLLGNdantptILAKAKDFGKSHK-SR-ASPAQLDNFRKSLVVYLKGAT--KWDSAVESSWAPVLDFVFSTLKNEL-
+>gi|1805725|emb|CAA71646.1| globin Cpa 3-2 [Chironomus pallidivittatus]
+ALTADQISTVQASFDKVKG----DSVGILYAVFKADPSIQTKFTQFaGKDletiKGTTPFEAHANRIVGFFSKIISEL--pnIDADVDAFVATHK-PRSVTHDQLNNFRAGFVGYMKAHT--DYAGA-ESAWGATLDTFFGAIFAKM-
+>gi|291224997|ref|XP_002732490.1| PREDICTED: neuroglobin-like protein-like [Saccoglossus kowalevskii]
+-LTPSEAIAIQSTWLFVYEDKEENGVELFVKLFTEHPDYQALFGYLeGIvGieniKNVPFLRVHASHVLIYLNTMLESLNDgtiLVELLKTLGYTHV-GLNLTPEHFDALGPILISLLQEKGGDSFTPFAEKAWLKGWGVmksvIVGALENGYQ
+>gi|15080667|dbj|BAB62534.1| hemoglobin chain [Moina macrocopa]gi|15080672|dbj|BAB62537.1| hemoglobin chain [Moina macrocopa]
+-LSASDRAIIRKTWEQARKDG-DVAPQILFRFVKAHPEYQKLFRSFaSVPqdelLGNGNFLAQAYTILAGLNVVIQSLGSrelLANQLNALGGAHF-SRGATPVMFDEFGAIAMDVLAEELGSAFNAEAKAAWTTAVRGLNAGIVKTL-
+>gi|4589708|dbj|BAA76873.1| hemoglobin [Daphnia magna]gi|4589710|dbj|BAA76874.1| hemoglobin [Daphnia magna]gi|322229321|dbj|BAJ72728.1| 2-domain hemoglobin [Daphnia magna]
+-LSANERSLIRKTWDQAKKDG-DVAPQVLFRFIKAHPEYQKKFSKFaDVPqselLTNGNFLAQAYTILAGLNVVIQSLSSqelLANQLNVLGGAHQ-PRGVTPAMFEEFGVIVEQVLEEELGNGFSAEARQAWKHGIHALVAGVSKTL-
+>gi|321477133|gb|EFX88092.1| hemoglobin [Daphnia pulex]
+-LSTQERAIIRTTWNKARKDG-DVAPKLLFKFLKAYPEYQKKFSKFaDVPqsnlLSNGNFLAQAYTILAGLNVIVQSLSSqelMANQLNALGGAHQ-PRGVTTTILElkEFGVILIQVLEEEIGSAMTIDARQAWKNGIHELIGGLSQTL-
+>gi|121268|sp|P02214.1|GLB_BUSCA RecName: Full=Globin; AltName: Full=Myoglobin
+-LDGAQKTALKESWKVLGADGPtmmKNGSLLFGLLFKTYPDTKKHFKHFdDATfaamDTTGVGKAHGVAVFSGLGSMICSIDDddcVNGLAKKLSRNHL-ARGVSAADFKLLEAVFKEFLDEATQRKATDAQKDADGALLTMLIKA------
+>gi|162453361|ref|YP_001615728.1| flavohemoprotein [Sorangium cellulosum 'So ce 56']gi|161163943|emb|CAN95248.1| putative flavohemoprotein [Sorangium cellulosum 'So ce 56']
+------VGLLRESFELVIERAPNLTHRFYGILFSRYPQVKPLFGRNSQe--------QQEKMLTEALAAVIDRLEDASwleEKLMAMGAKHV-DYGVTDAMYPWVADALISAMAEVAAAEWSPAHQEAWTEALGAIASLMQRGAR
+>gi|34330143|dbj|BAC82446.1| hemoglobin, chain IIB [Macrobdella decora]
+--SIEDIRDVQHDWKFVWGDAsldarVVFGKAVFKKLQELDGSVVEPLKVVHVeDp-DSDEFKNHVLRVLNGLDNLINLFDEqgvLVSQLDHLAKQHK-ErPGVNASHFRAFAKAFLEVLEVS-GSCPNL---DAWRGCLYGLGVRITAQ--
+>gi|61680653|pdb|1YHU|D Chain D, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin Reveals Novel Assembly Of 24 Subunits.gi|61680657|pdb|1YHU|H Chain H, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin Reveals Novel Assembly Of 24 Subunits.gi|61680661|pdb|1YHU|L Chain L, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin Reveals Novel Assembly Of 24 Subunits.gi|61680665|pdb|1YHU|P Chain P, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin Reveals Novel Assembly Of 24 Subunits.gi|61680669|pdb|1YHU|T Chain T, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin Reveals Novel Assembly Of 24 Subunits.gi|61680673|pdb|1YHU|X Chain X, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin Reveals Novel Assembly Of 24 Subunits
+--TTEDRREMQLMWGNVWSAQftgrrIAIAQAVFKDLFANVPDAVGLFGAVKGdEv-NSNEFKAHCIRVVNGLDSSIGLLSDpatLNEQLSHLATQHK-ArSGVTKGGFSAIAQSFLRVMPQV-ASCFNP---DAWSRCFNRITTGMTEP--
+>gi|125661837|gb|ABN49927.1| hemoglobin [Myrica gale]
+-FSEDQEALVVKSWTVMKLNAGELALKFFLKIFEIAPTAQKLFSYLkDS-nvplERNSKLKSHATNVFMMTCEsAVQLrkAGKvtvTESSLKRIGDVHF-KLQVVDEHYEVTRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVSAIKTEMK
+>gi|229500|prf||742505A hemoglobin zeta
+---------LKNAWGKISTDTTEIGTEALERLHLSFPTQK-LLSH-----GFAHVKAHGSKVAEALTSILGPVDSFKNAVGALSEVHA-Ki-------LRALSHCLGKSLZAHLYAZFTIGVBASLDKFLASVSTVLZSKYR
+>gi|255642835|gb|ACU21601.1| extracellular tetra-domain globin [Branchipolynoe seepensis]
+-VSDAQKAAIKASWAGA--DLQAAGTGFYVHLAAEAPAVYANF---NLg--ADPhgaKSQEQGLRVMKFVNQCVNSIDNMAIvqaKIDALAHRHM-SYNVKKSDFVPAKPCFLGALADALGGKFNADARAAWAGFYDIIAAGLST---
+>gi|326383372|ref|ZP_08205059.1| oxidoreductase FAD/NAD(P)-binding domain-containing protein [Gordonia neofelifaecis NRRL B-59395]gi|326197778|gb|EGD54965.1| oxidoreductase FAD/NAD(P)-binding domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
+-MSEPEQPILA---RTRVLLAgdpDRFARNVFARMFAMRPSLREFFPA-E-------MGSLRSSFVDVLDHVLEAIEAPDghgelvEFLAQLGRDHR--kYGVVSEHYWLMYEALMSEFQFAFGRRWTPEVEETVGQAMLLTTGVMRG---
+>gi|115913844|ref|XP_001199205.1| PREDICTED: similar to polymeric globin [Strongylocentrotus purpuratus]gi|115965676|ref|XP_001197673.1| PREDICTED: similar to polymeric globin [Strongylocentrotus purpuratus]
+PLTSAQKELVKRTWQVLAPNPAKHGAVMFAKLLTRHPNVGKLFP-FgkeDLSyeqlLKHAQVQAHGKKVMEKVGDAVDGLDDLDLlvpILKELGGRHV-GYGVNKQLFEPVGEVLLETIKEALGDTFNEELRLAWTAVFKIISDTMSEPLN
+>gi|121399|sp|P23216.1|GLBP1_GLYDI RecName: Full=Globin, major polymeric component P1gi|9347|emb|CAA37995.1| globin P1 [Glycera dibranchiata]
+HLTADQVAALKASWPEVSagDGGAQLGLEMFTKYFHENPQMMFIFG-YsGR--TEalkhssk--LQHHGKVIIDQIGKAVAEMDNakqMAGTLHALGVRHK-GFgd-IRAEFFPALGMCLLDAMEEKVPG-----lNRTLWAAAYREISDACIAG--
+>gi|148908091|gb|ABR17163.1| unknown [Picea sitchensis]
+-FSEEQEALVKKSWNAMKPNAPQLGFKFFLRVFEIAPSAKRLFSFLqD-SdvpiEKNPKLKAHGLIVFKmTCESAVQLREKgtvtfSESNAKDMGKLHL-TYGVLDEHFDVVKFCLLETIKDAVPDIWSPEMKIAWDEAYTQLAEAIKSEMK
+>gi|170031919|ref|XP_001843831.1| globin 2 [Culex quinquefasciatus]gi|167871230|gb|EDS34613.1| globin 2 [Culex quinquefasciatus]
+-LTGKQKITLLSAWGLIKQDLDLHGRNIMLLIFREHPHFIPYFD-FsADpNntslSENRALQAHSLNLIMALGALIEYgLKTpkmFECTLAKLVKNHK-TRRVTSQDVKMFGEVILMYFAQVLGRQSASSLPTAFNRLIEQIAEAFEAA--
+>gi|229366652|gb|ACQ58306.1| Hemoglobin subunit alpha-D [Anoplopoma fimbria]
+MLSKKQKELIAEIWGRLTPVADDIGADALHRMFASYPGTKTYFSHLDIsP-RSAHMLSHGKKIVLANPARlpaPDRPDKLQGALARTSVRHQ-T---------------------------------------------------
+>gi|260827190|ref|XP_002608548.1| hypothetical protein BRAFLDRAFT_98914 [Branchiostoma floridae]gi|229293899|gb|EEN64558.1| hypothetical protein BRAFLDRAFT_98914 [Branchiostoma floridae]
+-LTPTQVRLLQQTWKVILLHKKQNGFLIFKILFTDYPMTKKLFKGIdKVDpeqyEKTTSMRAHVTRFINSFDSFMECLEDPEalkSLLYDTGKAHL-RHNTKPEHFDDLEVVMMKSLKAVLGLKFTESVEEAWRTAFAFFVVHLK----
+>gi|340356646|ref|ZP_08679288.1| nitric oxide dioxygenase [Sporosarcina newyorkensis 2681]gi|339620573|gb|EGQ25142.1| nitric oxide dioxygenase [Sporosarcina newyorkensis 2681]
+MLDQKTIHIIKSTVPVLEQHGKTITTVFYRNMFEAHPELLDIFN---H--ANQSQGRQQTALANTVYAAAQHIDDLGailPAVVQIAHKHV-SLGILPEHYPIVGEYLLGAIKEVLGDAATSEIIDAWAAAYGVIADAFIGleakMYD
+>gi|314933259|ref|ZP_07840624.1| putative flavohemoprotein [Staphylococcus caprae C87]gi|313653409|gb|EFS17166.1| putative flavohemoprotein [Staphylococcus caprae C87]
+MLTEKEKSIIKETVPVLQDKGEIITSHFYKRMFKQHPELKNMFN---Q--TNQQKGLQSTALAQSVLAAAVNIEHLEnimPVVKEIAYKHC-ALQVPPAGYDIVGENLIEAIKEVVGLDDDHEIIKTWKKAYQDIADVFISveqdIYS
+>gi|8101728|gb|AAF72633.1|AF258616_1 hemoglobin P polymer precursor [Parartemia zietziana]
+-LSEREVAVVKQTWNLVKPDLMGVGMRIFRSLFETFPAYRVVFPKFgDVPlnqlADIPAVGKHAIAVTAKLDQLIQTLDEPANlalLARQLGEDHI-VLQVNRPMFKNFGTVLVRLLENDLGQKFSNYASKAWHKAYNVITEYIEE---
+>gi|156405084|ref|XP_001640562.1| predicted protein [Nematostella vectensis]gi|156227697|gb|EDO48499.1| predicted protein [Nematostella vectensis]
+-LTERQIKLVQDTWRLLIPSQKKTAMIFYLKLFTLDPIFKEVFS-FHTeNegqlEQDERFLFQSRKFMEMINSAVDRLNDISllvMILKSLGEVHW-TkFKIKPEYYEPVGKALIYSISKGLGSLFNDEIGEAWQAMYDLMSGAMISGTK
+>gi|974720|dbj|BAA09964.1| two-domain chain of the polymeric hemoglobin (intracellular) [Barbatia lima]
+---SDNKSLIRETWEMIAGD-RKNGVELMALLFEMAPESKKEFRRLgDISpeniPNNRKLNGHGITLWYALTSFVDQLDNkndLEDLCRKFAVNHV-SRGVLNVKFGWIKEPLAELLRRKCGSRCEDRHINAWWKLIDVICAILEE---
+>gi|334704356|ref|ZP_08520222.1| globin [Aeromonas caviae Ae398]
+-MTFEQIELVQKAWGRVSALNNSYVQEVYEELFRLSPELRALFPPYqELPv----------AKVSDTLNTVITSLSQLDAlgfIIRDLGRRHQ-RFNVQPHQFALLKQALTQVLARRLGSGFTPALHS------------------
+>gi|255722886|ref|XP_002546377.1| conserved hypothetical protein [Candida tropicalis MYA-3404]gi|240130894|gb|EER30456.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
+PLTARQIEIIHQSIPILESLDIRLGEKFYKRVVRRYDNLKPYFN---ETntklLRQPRAFAY------TILMYAKYIEDLSplqELLNRIISRHI-GLQVKPEQYPLLGEVFIETMADLFPPGvADDEFKEAWATAYGNLSNMLieaeRVEYA
+>gi|62183620|gb|AAX73248.1| myoglobin [Ophelia bicornis]
+---------VADTWATVSADSHKHGVAFFLDFFAAHPNYQDFFPKLeGKSgsalKGDPNMQAQADAVMAAIGQCVAAGGDkgaLAGPLGALAKTHL-PRGIKSAYFKDAFDSFVAYLGKS-GV-----STDGWPAAIDTIMEVLTAELK
+>gi|333988983|ref|YP_004521597.1| monooxygenase [Mycobacterium sp. JDM601]gi|333484951|gb|AEF34343.1| monooxygenase [Mycobacterium sp. JDM601]
+-----ALQALRNAFAVADGGGDSFVGRLFTRWFGTDPSARDLFPA-DL-------TAIRVAFAQAMNWVYGELvaQraqEPVAFLAQLGRDHR--kYGVTQHHYGTMGRVLYAALRDELAEDWTAAVEDAARESLNLIIGVMGGA--
+>gi|221117935|ref|XP_002162062.1| PREDICTED: similar to neuroglobin [Hydra magnipapillata]gi|221123757|ref|XP_002164731.1| PREDICTED: similar to neuroglobin [Hydra magnipapillata]
+PLSGKEIETLKKSWTTAKQFWNEICTCAFSRWFSTYPEIQSKFGVYgDNlTmnevLASESLCIHIRKSVELIEIIIKKVDErheLSEYLIELGKLHH-KFGAEQKYATALGSSFVFAISQIC-PNIDMITEGAWDSLFKYIVTHIKLGIR
+>gi|321477127|gb|EFX88086.1| hypothetical protein DAPPUDRAFT_96311 [Daphnia pulex]
+-LTPHQIRDVQTSWENLRSDRNSLVSAIFIKIFKETPRAQKHFTKFaNVAvdslSGNADYEKQIALVADRLDTIISAMNDKlqlLGNINYMRYSHqP-PRAIPRERFEDFARVLLDVLVSK---GVSADDMDSWKGVLTVFVNGVS----
+>gi|322229318|dbj|BAJ72725.1| 2-domain hemoglobin [Daphnia magna]
+-LTPHQIQDVQRSWENVRNGRNALISSIFVKLFKETPRIQKHFAKFgSVAvdslAGNAEYEKQIALVADRLDTMISAMDDKlqlLGNINYMRYTHT-ERGIPRAPWEDFSRLLLDVLGSK---GVSTDDLDSWKGVLAVFVNGVS----
+>gi|255080446|ref|XP_002503803.1| predicted protein [Micromonas sp. RCC299]gi|226519070|gb|ACO65061.1| predicted protein [Micromonas sp. RCC299]
+-WTERKRLVIQSSWAALLsahgNDRMATGSKIFRKLFTGDTAVLRLFP-FrH-QartlFVSAPFKLHAKLFVDTMTELIANLHDLEKverDVRELGKRHL-TYGVQPAHFDAMGEALIAVLDEscHHPSDevtLDKEERDAWLGFWGFIAKET-----
+>gi|198419488|ref|XP_002119301.1| PREDICTED: hypothetical protein [Ciona intestinalis]
+PLTEIEIEGVQESWEKVSSgGPKTTGLILMEKLFNTYPASIAVFSHLgIPsKpdgaitvsdlASIGGVSNHAVSLASRIGKLVGLLNNeteLKESSTEVGRIHV-KYGVTSEHVDLLGSVLLSVISENQGLSNTSELIGWWSKTWNIIGNYVKTGL-
+>gi|154252910|ref|YP_001413734.1| globin [Parvibaculum lavamentivorans DS-1]gi|154156860|gb|ABS64077.1| globin [Parvibaculum lavamentivorans DS-1]
+--TEQEKQLIEKSIERVADVAGDPASHVYARLFAQQPEMEAMFV---LD-TDGNVRGHM--LSEALDCVFDFLGPRAYapvLIQSELTNHS-NLGVPPAVFATFFRVVMETFRELLGAEWTAETDAAWAKLLGEFDTTIAEHAE
+>gi|119474700|ref|ZP_01615053.1| hypothetical protein GP2143_12811 [marine gamma proteobacterium HTCC2143]gi|119450903|gb|EAW32136.1| hypothetical protein GP2143_12811 [marine gamma proteobacterium HTCC2143]
+--DQ-----IVSCLEQVGDRCKDPTALVYERLFSANPEMKPLFI---MD-GNDAVKGQM--LFQVLDGIIDFVGDRRYaetLFLSELINHD-IIGVPPRVFSTFFRTIMETFRDIMGADWTAEFDQAWAQLLSDLDEMIREKAE
+>gi|67463861|pdb|1X3K|A Chain A, Crystal Structure Of A Hemoglobin Component (Ta-V) From Tokunagayusurika Akamusigi|220702318|pdb|2ZWJ|A Chain A, Crystal Structure Of A Hemoglobin Component V From Propsilocerus Akamusi (Ph4.6 Coordinates)gi|288562877|pdb|3A5A|A Chain A, Crystal Structure Of A Hemoglobin Component V From Propsilocerus Akamusi (Ph5.6 Coordinates)gi|288562878|pdb|3A5B|A Chain A, Crystal Structure Of A Hemoglobin Component V From Propsilocerus Akamusi (Ph6.5 Coordinates)gi|288562879|pdb|3A5G|A Chain A, Crystal Structure Of A Hemoglobin Component V From Propsilocerus Akamusi (Ph7.0 Coordinates)gi|291463432|pdb|3A9M|A Chain A, Crystal Structure Of A Hemoglobin Component V From Propsilocerus Akamusi (Ph9.0 Coordinates)gi|330689360|pdb|3ARJ|A Chain A, Cl- Binding Hemoglobin Component V Form Propsilocerus Akamusi Under 500 Mm Nacl At Ph 4.6gi|330689361|pdb|3ARK|A Chain A, Cl- Binding Hemoglobin Component V Form Propsilocerus Akamusi Under 1 M Nacl At Ph 4.6gi|330689362|pdb|3ARL|A Chain A, Cl- Binding Hemoglobin Component V Form Propsilocerus Akamusi Under 500 Mm Nacl At Ph 5.5gi|409322|gb|AAB27065.1| hemoglobin component V [Tokunagayusurika akamusi=midges, 4th-instar larva, Peptide, 152 aa]
+-LSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLkGHPldevKDTANFKLIAGRIFTIFDNCVKNVGNDKgfqKVIADMSGPHV-ARPITHGSYNDLRGVIYDSM--HL----DSTHGAAWNKMMDNFF--------
+>gi|290462305|gb|ADD24200.1| Non-symbiotic hemoglobin 2 [Lepeophtheirus salmonis]
+----------------------------------------------------KKLKRHGGIVMKALGKLVGFLETgkiiaIVNTIKGIANSHS-KRGVLVQQFTPICDILLKYLGEAFGDQLSNEGTATWKKFLDIFVSVINEAYD
+>gi|260950945|ref|XP_002619769.1| hypothetical protein CLUG_00928 [Clavispora lusitaniae ATCC 42720]gi|238847341|gb|EEQ36805.1| hypothetical protein CLUG_00928 [Clavispora lusitaniae ATCC 42720]
+-FSPKEIALVRYTWNRMLVDDAEPKIslpGAFARpkkmaqssLHASSTFCTQLYSNLlSMDpeleQAFPSLRHQAVSMAGVMSLAVNSLDNLsslDAYLEQLGKRHS-RiLGIEPFQFEMMGEALVQTFVQRFGSKFTQQLEVLWIKFYMYLANTLL----
+>gi|254463661|ref|ZP_05077072.1| globin domain protein [Rhodobacterales bacterium Y4I]gi|206684569|gb|EDZ45051.1| globin domain protein [Rhodobacterales bacterium Y4I]
+-MTPQEVQHVQQSFAGVFARKADLAERFYVHLFTRLPQARGMFRG-NFvKqkamL------------TEMIAACVRNLDDpatLAELSARLVQDHA-HLDLGARESEAAKRALIAALRDVLGPALDPETETAWASAISRVAGTMARH--
+>gi|326434457|gb|EGD80027.1| hypothetical protein PTSG_10302 [Salpingoeca sp. ATCC 50818]
+------MKITQESWAMVEREIPNWTDIFYDKMFS-DPNIAKLFP-F--SagdfKTNEKFQTHTQKVRDTMHTAMTSIREFEklgPVLKKMGERHA-DYGVIPEHSVNFKEAFLHTLKTGYGDKWNEDLDDAWNQCVDALLEP------
+>gi|51773697|emb|CAH23231.1| hemoglobin [Biomphalaria glabrata]
+-VSDDDRRALQSSWSRLQsqaGNKQEAGIKLVTWLFDNVPNMRDQFSKFnAHsSdealRANNEFLRQVDVIVGGLDSLINNVDNSDNfqaAIERLVDVHL-HmsPSVGLEYFGPLQQNIRSYIQNALGVAADSAEARSWTNLFTAFNEFLA----
+>gi|196001585|ref|XP_002110660.1| predicted protein [Trichoplax adhaerens]gi|190586611|gb|EDV26664.1| predicted protein [Trichoplax adhaerens]
+-------------------------------------------------dlIKDPLVRSHGLRFMKAIETMLEIEFDSNGcifLFSAIGNRHC-SYGIEADYLDYVPQAFRFMLTKALGNNYTDKIASVWDEILSHIIKAMQDKVR
+>gi|50897143|dbj|BAD34605.1| hemoglobin III [Calyptogena nautilei]
+-VTIADVKNVQTSWNSIKDKWEtDHGLNFYTTLFDDVPEIKSAFVKAgNK--TDYQVKGQAVRFGRMVTEWIDNLDNEEAlvaKINGMCATHR-TRGItNVDLFEVALGELVKYIAGK--TSFTKAQRESWAVVNGCIIQTMRNYF-
+>gi|122733|sp|P06148.2|HBF1_URECA RecName: Full=Hemoglobin F-Igi|162545|gb|AAA30331.1| F-I globin precursor [Urechis caupo]
+-LTTAQIKAIQDHWFLNIKGcLQAAADSIFFKYLTAYPGDLAFFHKFsSVPlyglRSNPAYKAQTLTVINYLDKVVDALGGNAGaLMKAKVPSHD-AMGITPKHFGQLLKLVGGVFQEEFSA--DPTTVAAWGDAAGVLVAAM-----
+>gi|256080649|ref|XP_002576591.1| globin X [Schistosoma mansoni]gi|238661865|emb|CAZ32828.1| globin X, putative [Schistosoma mansoni]
+-FTNEQLLLLQTSWSIVKQHIEKIGVITFLGIFEQHSDFRDAFTEFrKRKfvdiKHDPAMQVHGLRVLSVVDKLITRlpkTDDIEKQLMMIGSKHC-R-YVPTIAlVssvsDQLWGAIEPVLKEE--GLWSADLAVTWKSILDYLTRT------
+>gi|153876610|ref|ZP_02003843.1| bacterial hemoglobin [Beggiatoa sp. PS]gi|152066926|gb|EDN66157.1| bacterial hemoglobin [Beggiatoa sp. PS]
+-------FEIQSTYEKILPHLDEFSRLFYQQLFEIKPAFKILFRQTDLrIq------KQMVIRMIEVVVQGINNLENFMSIIQRIHQRHY-ELHLKPEDYRLAGQALVLSLEKYFGDEFTPTLKKIWLDFYESIVATM-----
+>gi|1707914|sp|P51536.1|GLBC_NIPBR RecName: Full=Globin, cuticular isoform; Flags: Precursorgi|309617|gb|AAA65540.1| globin [Nippostrongylus brasiliensis]
+------KKHTVESMKAvpVGRDKAQNGIDFYKFFFTHHKDLRKFFKGAeNFGaddvQKSKRFEKQGTALLLAVHVLANVYDNqavFHGFVRELMNRHE-KRGVDPKLWKIFFdDVWVPFLESK-GAKLSGDAKAAWKELNKNF---------
+>gi|121251|sp|P27613.1|GLBH_TRICO RecName: Full=Globin-like host-protective antigen; Flags: Precursorgi|161675|gb|AAA30102.1| globin-like, host-protective antigen [Trichostrongylus colubriformis]
+------RKDALSALDVvpLgsTPEKLENGREFYKYFFTNHQDLRKYFKGAeTFTaddiAKSDRFKKLGNQLLLSVHLAADTYDNemiFRAFVRDTIDRHV-DRGLDPKLWKEFWSIYQKFLESK-GKTLSADQKAAFDAIGTRF---------
+>gi|110825998|sp|P80721.2|GLB_PAREP RecName: Full=Globin-3; AltName: Full=Myoglobin
+--------------------IVETGLGAYHALFTAHPQYIIHFSRLeGHTienvMQSEGIKHYARTLTEAIVHMLKEIsndAEVKKIAAQYGKDHT-SRKVTKDEFMSGEPIFTKYFQNLVK---DAEGKAAVEKFLKHVFPMMAAE--
+>gi|196001583|ref|XP_002110659.1| hypothetical protein TRIADDRAFT_54901 [Trichoplax adhaerens]gi|190586610|gb|EDV26663.1| hypothetical protein TRIADDRAFT_54901 [Trichoplax adhaerens]
+-------------------------------LIKLSPATKIYFHGVDFeKrdsylAKNTFLRNHAARFMEAINVIIGQdMDIfsVESYFRVVGSKHH-SYNLKLEHVQDISDAFLEMARNALKKKFTKSTEAAWRSFFQMVTDAIKNG--
+>gi|339235287|ref|XP_003379198.1| putative globin [Trichinella spiralis]gi|316978174|gb|EFV61187.1| putative globin [Trichinella spiralis]
+PLTPRECFLLIQNWRAISRKMVDTGIRTFInnnvDLLELFPTVKQEIQS----npesFDTEILEYHAQRVMSVLDQAIHLIGDADSffnLLHLYADYHA-KkQLFSPDFFWEIEPALVDSIKETLGDRYTENMANIYPKVFKLILSTLVQFCR
+>gi|170589934|ref|XP_001899728.1| hypothetical protein Bm1_41355 [Brugia malayi]gi|158592854|gb|EDP31450.1| hypothetical protein Bm1_41355 [Brugia malayi]
+-LSLEDRKLLHETFNLFEKDLTTNGLRIFLqlalitkfiylfcmRTLSENPDYKYFWPQFrAIPdsslISSSVLRNFAHTYMNALKKIVESLNNEQmpyEVLQRISAKHA-RHNIQMHHMQKMIKPLLENVRRALG-RHDENAERAWETLFQTVG-AIVEHYK
+>gi|320164492|gb|EFW41391.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
+---HETRDVIKSTWALAIQKQDEADvtpvatfvNVFFGKLFELCPETRLVFGQ-DLsL-QGKS----LSSVLTGMLEFVVHPKKLTTQVKSLAVKHV-GLGITPDMFDAFGAALVYTIKTRIGKVWSPQTERVWVDAYGGVNNIITQQMS
+>gi|341887822|gb|EGT43757.1| CBN-GLB-25 protein [Caenorhabditis brenneri]
+----RDFFTLKNWWKSVDRKRVEASTYMFSRYLNDFPENKAFYAKLkNVnAqtvdmnCSDPGFEAMAAQYLKVFDDVITAveekPGDVQSacdRLSAVGKMHR-AkvSGagMESSMFQNMEEPFIQMVKYILQDRFNEKAEMLYRKFFQFCLKYLLEGF-
+>gi|242007866|ref|XP_002424739.1| hypothetical protein Phum_PHUM149070 [Pediculus humanus corporis]gi|212508232|gb|EEB12001.1| hypothetical protein Phum_PHUM149070 [Pediculus humanus corporis]
+--------VVLNDWPKIRKNYKKIFIDSFINYFAENPNYKLLFPSFsNVSeddlPFNHCFRLHCFAVYKAINFLMSNwLGEyeedDSKILPVIGKTHF-DRGITLEMMNLYKHSIVYSCNNHLKPN--LKRKLSWQTVFDHIFDyYLGSAY-
+>gi|17567933|ref|NP_509614.1| GLoBin family member (glb-17) [Caenorhabditis elegans]gi|3877381|emb|CAA86423.1| C. elegans protein F49E2.4a, partially confirmed by transcript evidence [Caenorhabditis elegans]
+-ITDEEVTAIRDVWRRA--KTDNVGKKILQTLIEKRPKFAEYFGIQsESlDiralNQSKEFHLQAHRIQNFLDTAVGSLGFcpissVFDMAHRIGQIHF-YRGVNfgADNWLVFKKVTVDQVTtgttdsskekedtnsngtangkvdtdaSLIPiadinNVYSGencLARLGWNKLMTVIVREMKRGFL
+>gi|341890740|gb|EGT46675.1| CBN-GLB-13 protein [Caenorhabditis brenneri]
+-LTRRERILLEQSWRKTRKtGADHIGSKIFFMVLTAQPDIKAIFGL-eKIPtgrlKYDPRFRQHALVYTKTLDFVIRNLDYpgkLEVYFENLGKRHV-AmqgRGFEPGYWETFAECMTQAAVEWE-ANRQRPTLGAWRNLISCIISFMRRGFD
+>gi|339235297|ref|XP_003379203.1| putative WAP-type 'four-disulfide core' [Trichinella spiralis]gi|316978179|gb|EFV61192.1| putative WAP-type 'four-disulfide core' [Trichinella spiralis]
+-LSVYDKRLIEESWCALR-DKDEVAKQIFLRVLTSNEKIRTIFDLH-TcPddelEENSAFQRHVKSLSLFLSICADSlsvsPDRLVSIARSIGEKHV-NfRWvsFDAEYWLLMKCAMVEVISSKQRPKISHLVNTAWNSLLSFVIFEIKHSFL
+>gi|9664871|gb|AAF97245.1|AF284381_1 dehaloperoxidase A [Amphitrite ornata]
+----------------IRGDLRTYAQDIFLAFLNKYPDERRYFKNYvGKSdqelKSMAKFGDHTEKVFNLMMEVADRATDCvplASdanTLVQM-KQHS---SLTTGNFEKLFVALVEYMRA-SGQSFDS---QSWDRFGKNLVSALSSA--
+>gi|308487955|ref|XP_003106172.1| CRE-GLB-28 protein [Caenorhabditis remanei]gi|308254162|gb|EFO98114.1| CRE-GLB-28 protein [Caenorhabditis remanei]
+-LVPDHHKLIRKSWGRI--PKTQFGKAALEAFIRISEVNHSIFGD--KeT-----ENRHIKYFVDLVQSSVDNLEDLEAsvkpWLDLIGRGHS-DFKITGKHWENFAESLLNTATEWNGPGrRHKETVRAWMLMTSFLADRLAHASR
+>gi|307179623|gb|EFN67896.1| hypothetical protein EAG_07959 [Camponotus floridanus]
+-FSAEEYALVKKVWSGIEINPQFHGNACLRSFCEIYPQYVKFFTQEsKLh-lSFDTRITVKFSIIMETMGYLLldfnkrpKQLDRLVG---YIAMVHK-DMQLDEQDMRNFATSLFQYLSRTYPTQMTAQCQEAMSKFMDSVIKELFV---
+>gi|194745446|ref|XP_001955199.1| GF16359 [Drosophila ananassae]gi|190628236|gb|EDV43760.1| GF16359 [Drosophila ananassae]
+-FTLSERLALRQAWNIVRPFTRRYGQEIFFNYLNDAYLRISKFKHTkGN--YLHVLHNHFRGFLCFIGSLIEEQDPvmFQLMLNDNNMTHS-RCKVGAAFILELAQAMTDYILKVFEKVSSASLESGFRKIVD-----------
+>gi|312115464|ref|YP_004013060.1| globin [Rhodomicrobium vannielii ATCC 17100]gi|311220593|gb|ADP71961.1| globin [Rhodomicrobium vannielii ATCC 17100]
+---PNQLAALREFFSNIESDLPEIVSLMYERFFEAVPEAASLFKG-DFAaqqmQFTSMLRST-----IALTRSSQLwPVDAEAgraslpEIEYLGLRHA-CVGVQPEHFAAMKWALARTLAEMYPRDFDRDIEDALSFIFDVVARA------
+>gi|84684315|ref|ZP_01012217.1| flavohemoprotein-like protein [Maritimibacter alkaliphilus HTCC2654]gi|84668068|gb|EAQ14536.1| flavohemoprotein-like protein [Rhodobacterales bacterium HTCC2654]
+---------IRACLSDLYSVRIEFSRRFYDRFFEQVPEARRLFVHNqDK-qalML----YAAVAMTMRG----MESGRDLDGELIEFGKRHA-RLGVKQDMFPIFGSTFLETLIEYLPHHDHPKIAKAWWGGFT-----------
+>gi|255724342|ref|XP_002547100.1| predicted protein [Candida tropicalis MYA-3404]gi|240134991|gb|EER34545.1| predicted protein [Candida tropicalis MYA-3404]
+-LSPFEIDQIQSSWNRIS-NKNNFYNELYLNLIEKNPNLGEIFNH-----DESVITHHAKTFGDCFNFVVSNIENveiIEEFIYSFVQENQ-RfSQMSTKYLEPMGNSLILTLKQFLRSYSTSVLELTWVKVYVYFANSIL----
+>gi|339256778|ref|XP_003370265.1| putative globin [Trichinella spiralis]gi|316965561|gb|EFV50254.1| putative globin [Trichinella spiralis]
+-FTDEEVELLARTWKKDDFDwLYRIGTDIYTCVFQLAPELKVFFPYVtECeKknqswESSKGFRTQALRFVQILGMAVEKTesrmkDDdshLHHRLYKLGETHR-RFalkGFTPTHWKGF--VIAVRVAMrraveAM-PNLTPAecetAIEAWDKLSRYVVHRMEEGYF
+>gi|298705122|emb|CBJ28565.1| hemoglobin [Ectocarpus siliculosus]
+--------GVKRNWAMISEGPETQGSfngastslvalydTFFARLFLLEPSMRSMFGD-NM-iRQ--------SKFLVGLVNIIVKMEDmLKQGLSPLysfADRSV-AMGARPEHYEVIAEVLPIALEACAGEGvWTPDIAGAWRDVMSFAILAVV----
+>gi|312080149|ref|XP_003142477.1| hypothetical protein LOAG_06894 [Loa loa]gi|307762359|gb|EFO21593.1| hypothetical protein LOAG_06894 [Loa loa]
+SLTSAQIHLVRNIWRQVYvtKGPTVIGSTLLHGIFFKSKKIKDQFFKcpFpHQfPn-RDSFNNAHAKAIGEMLDKIVDNLENLEsvsGYLFSIGAIHA-NlvrRQVSREIWNLMAETFIDCTLDWgDKKGRTEASRKAWAFIIAFVIEKIKR---
+>9287755aa6aa27583da6be3b2408bfcc
+HLTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFgDLStpdavMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHC-DkLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH
+>gi|77917416|emb|CAG25614.2| cytoglobin-2 [Tetraodon nigroviridis]
+-LSDTEREMIRDAWGHVykN--CEDVGVSILIRFFVNFPSAKQYFSQFqDMEepeemERSSQLRHHACRVMNALNTVVENLHDpekVSSVLAVVGRAHA-VkHKVEPMYFKILSGVILEVLCEDFPEFFTADVQLVWSKLMATVYWHVTG---
+>gi|121270|sp|P09965.1|GLB_DOLAU RecName: Full=Globin; AltName: Full=Myoglobin
+ALSAAEAEVVAKSWGPVfaN--KDANGDNFLIALFEAYPDSPNFFADFkGK-siadiRASPKLRNVSSRIVSRLNEFVSSAADagkMAAMLDQFSKEHA-GFGVGSQQFQNVSAMFPGFVAS--IAAPPAGADAAWGKLFGLIIDAMK----
+>gi|156390503|ref|XP_001635310.1| predicted protein [Nematostella vectensis]gi|156222402|gb|EDO43247.1| predicted protein [Nematostella vectensis]
+PLDAKETQLVRKTWAILG--DRqvEVGKSLFLRFFEEHPTSKDLFPEFrNISnekiAESPALYGHARRVMKSVDNAVASIENVQVYSAYLYELGTRhQtRQLSEEQLKFMGGAFLFAMRLHLRKEWSRATSKAWEKIFSFMADAMMRG--
+>gi|156373757|ref|XP_001629477.1| predicted protein [Nematostella vectensis]gi|156216478|gb|EDO37414.1| predicted protein [Nematostella vectensis]
+PLSEAQKYLVRETWETIE--PQkqTVGKKAFLRFFDMNPDYQNLFPEFkSLSyeelQKANALHGHAKRVMKAVENAVMSIDDVMSFSAYLEELGRRhKtRALKPSYLEAMHGALMDTLRNLLQSQWTEETAEAWNKLFSFISTTMVRG--
+>gi|226304877|ref|YP_002764835.1| oxidoreductase [Rhodococcus erythropolis PR4]gi|226183992|dbj|BAH32096.1| putative oxidoreductase [Rhodococcus erythropolis PR4]
+SVDSQAISLVRSSFKSVAAVEdgpERLARTFYSILFARSPETREFFPA--------AMDVQRDRLVGAIAHVVERLDEsdaILEYLAQLGRDHR-KYGVTDEHYTAVGNALIEALETFGGAEmWTDEVDSAWRNALAIISAAMMD---
+>gi|111022476|ref|YP_705448.1| flavohemoprotein [Rhodococcus jostii RHA1]gi|110822006|gb|ABG97290.1| probable flavohemoprotein [Rhodococcus jostii RHA1]
+-MDSQAISLVRSSFKAIAAVPdgpQTLSRSFYALLFARYPDARDFFPA--------AMDAQRDRLISAVQYVIERLEEesgqILAYLAQLGRDHR-KYGIEDAHYVAVGNSLIAAVEQFPSTEpWTDELEQAWRDVLAVVAATMMD---
+>gi|119368208|sp|P80017.3|GLBD_CAUAR RecName: Full=Globin D, coelomic
+DLTPAEKDLIRSTWDQLmtH--RTGFVADVFIRIFHNDPTAQRKFPQMaGLSpaelRTSRQMHAHAIRVSALMTTYIDEMDTevLPELLATLTRTHD-KNHVGKKNYDLFGKVLMEAIKAELGVGFTKQVHDAWAKTFAIVQGVLITK--
+>gi|340378768|ref|XP_003387899.1| PREDICTED: neuroglobin-like [Amphimedon queenslandica]
+SLTSAQVALIESTWKVVK--KDLqgAGNIMFLKLFQIDVSVRDKFP-FrDV-pyeelEDSESFLKHSLQVMETIDLAITLLlgGemeKLVEALVDLGMAHA-MQGLKPEDFDHVGEALVHALGVALGKEFNDEAKKAWTLLYSVVTAKMKEGLK
+>gi|327360036|emb|CBL51560.1| globin [Branchiostoma floridae]
+ALSAAELATVKQAWAKLT--AssfEDAGEKVFLALLKD-PNIKANFKKFkDIPeaslPGNADMRAHGKKVCTVLDKFIKGDDG---AAKSTGTMHK-GLGMSNDQIGAMRGALVAVLNDA-G--E-GGAVPAWNKLFDHFMEVHKT---
+>gi|309274255|gb|ADO63769.1| hemoglobin [Branchinotogluma segonzaci]
+-VTAAQKAAIKDSWAGVD--LQVAGNAFYNQLQANAPDAYAVFN-Lg----SDSgKIAAQGLKVMTFIDGIVKGLDDMDGVkasIDTLGGRHT-SYGAKKVHFGPAGPCLLAALAEVCGGKFTPAAKDGWTALYGLISDGICA---
+>gi|321252935|ref|XP_003192569.1| flavohemoprotein (Hemoglobin-like protein) [Cryptococcus gattii WM276]gi|317459038|gb|ADV20782.1| Flavohemoprotein (Hemoglobin-like protein), putative [Cryptococcus gattii WM276]
+PLTEAQKDIIKSTAPVLEKHGVTITTHFYKNMILAHPELKDVFSES-----AQKLGHQPAALAAAVYAYalnIHDLTPMVPVVERIAHKHT-SLHITANQYGIVGKHLIQSIVDILGDAVTPEVADAWYNGYWNLAHIFIN---
+>gi|19639|emb|CAA32492.1| unnamed protein product [Medicago sativa]gi|166388|gb|AAA32657.1| leghemoglobin [Medicago sativa]
+SFTDKQEALVNSSWEAFKQNLPRYSVFFYTVILEKAPAAKGLFSFLkNS-aevQDSPQLQAHAEKVFGLVRDSAVQLRAtggVVLGDATLGAIHV-Rk-GVVDPHFVVVKEALLKTIKEAAGDKWSEELNTAWEVAYDALATAIKKAM-
+>gi|242247087|ref|NP_001156237.1| neuroglobin-like [Acyrthosiphon pisum]gi|239788583|dbj|BAH70964.1| ACYPI007228 [Acyrthosiphon pisum]
+SLSPLQISQLKDSWSVLaqD--PSQLASALVIRLFKENPEYQSLFKRLkNLSidelASNPQFMSHASKVGAALASTIDHLDKpeeLEKLLTNLGIKHK-KYGLSAKHFQVIGDVLIAMITEAIG-DSEPELLDLWKSSLTSVLSI------
+>gi|13810245|emb|CAC37410.1| globin [Sabella spallanzanii]
+--SMEDRQEVLNAWEALwS--AeytgrrVMIAQAAFQKLFEKAPDSKALFTRVNVDnIGSPQFRAHCIRVTNGFDTIINMAFDtdvLEELLTHLGNQHT-KyQGMRAAYLTHFRESFAEILPQA-IPCFNT---AAWNRCITAMQDKIGAS--
+>gi|241825972|ref|XP_002414692.1| cytoglobin-1, putative [Ixodes scapularis]gi|215508904|gb|EEC18357.1| cytoglobin-1, putative [Ixodes scapularis]
+GLSKRDTKLIRNSWSMLCKQHPKADQLIFKALFTKHPDFMALFQHFkDKDlgvvLSDPQFALHSSAIIQAFGTIIRSLDDPAGVVAlirKNATDHT-TrKGVQPSHFEAMLNVVLEVLQDKLGSRFKPEAITAWEKFIEV----------
+>gi|291238620|ref|XP_002739222.1| PREDICTED: Globin D, coelomic, putative-like [Saccoglossus kowalevskii]
+SLTDQHRVILLDSWKVIqeD--IAKVGVIMFMGLFETHPECKEVFMPFkELQgddlRWSSALKAHGLRVMAVIERVLARIDSdekIEEHLKALAKKHV-EYGANSDLVRLFGPQFIGSMKRQLHKSWSDEMQDAWTVLFDIIIYHMTT---
+>gi|322229316|dbj|BAJ72723.1| 2-domain hemoglobin [Daphnia magna]
+-LTANDRRIIRKTWDQAK--KdGDVPPQILFRFIKAHPEYQKMFKSFaDVPqaelLGNGNFLAQAYTILAGLNVVIQSLSSqelIANQINALGGAHK-PRGATPIMFEQFGAVTEEVLAEELGSSFNAEARQAWKNGMRALVTGIT----
+>gi|893363|dbj|BAA09588.1| hemoglobin (2 domain) [Barbatia lima]
+---PANKGLIRETWNIVA--GdRKNGVELMALLFEMAPDSKKEFRRLgDVSpaniPNNRKLNGHGITLWYALANFVDQLDNktdLEDVCRKFAVNHV-LRGVLDVKFAWIKEPLAELLKRKCGQRCTEKHVKAWWKLIDVVCAVLEEH--
+>gi|56405306|sp|P02226.2|GLB7A_CHITH RecName: Full=Globin CTT-VIIA; Flags: Precursorgi|2155293|gb|AAB58930.1| globin VIIA.1 [Chironomus thummi thummi]
+PLSADQAALVKSTWAQVR--NSEV--EILAAVFTAYPDIQARFPQFaGKDvasiKDTGAFATHAGRIVGFVSEIIALIGnesnapAVQTLVGQLAASHK-ARGISQAQFNEFRAGLVSYVSSNV--AWNAAAESAWTAGLDNIFGLLFA---
+>gi|13249109|gb|AAK16680.1|AF257469_1 globin chain a1 precursor [Eudistylia vancouveri]
+-----KRLKVKLQWAQSFGfenTREDFEDELFRNFFKRKPDAPEkFFTRVrGD-nIYSPEFRAFGMRVASGLDMVLSLSDDeaaFQAALAFLKAQHA-PLGIGAEFNLAFKEAVLDTVAAHVGRCFDK---DAWNACMEIIMTGIQS---
+>gi|121275|sp|P18202.1|GLB_TUBTU RecName: Full=Globin, extracellular monomeric
+-----QRFKVKHQWAEAFGtshHRLDFGLKLWNSIFRDAPEIRGLFKRVdGD-nAYSAEFEAHAERVLGGLDMTISLLDDqaaFDAQLAHLKSQHA-ERNIKADYYGVFVNELLAVLPDYLGTKLDF---KAWSECLGVITGAIHD---
+>gi|974720|dbj|BAA09964.1| two-domain chain of the polymeric hemoglobin (intracellular) [Barbatia lima]
+---PVNKSLIRQTWNMMA--GdSKNGVDLMALLFQIAPESKKEFTRLgDVSpeniPNNRKLNGHGITLWYALTSFVDQLDSpndLEDLCRKFAVNHV-ARGVLDVRFGWIKEPLAKLLRRNCGN-CDEAI-QAWWELIDVICAVVKE---
+>gi|74096499|ref|NP_001027701.1| globin [Ciona intestinalis]gi|34364574|emb|CAD89600.1| globin [Ciona intestinalis]
+--KRSDIINIQDSWNTLKGfGYETVGMLVLHRLFNDAPQTRYLFSQLSLSsnesftleqmRNNSRVVYHANRVARAVGRLVDLIElptNFTDHLVWLGQRHA-YHGVAPVNFDYMGPVLLETIKVNLELPSDSPTLSAWAKAYGVIKNGIK----
+>gi|342859152|ref|ZP_08715806.1| hypothetical protein MCOL_09748 [Mycobacterium colombiense CECT 3035]gi|342133393|gb|EGT86596.1| hypothetical protein MCOL_09748 [Mycobacterium colombiense CECT 3035]
+----DALRVLRDAFAPgaadsAgD--PGGLVHRFYTHWFALDGSVRDLFPP--------EMAAQRLAFGHALHWVYGELvarraQEPVAFLAQLGRDHR-KYGVLPHHYDTLRRALLATLRTHLGAAWTDAVDEAATQSLNLITGVMSG---
+>gi|183980669|ref|YP_001848960.1| monooxygenase [Mycobacterium marinum M]gi|183173995|gb|ACC39105.1| monooxygenase [Mycobacterium marinum M]
+----DALRVLRDAFAPqpdldhKtQ--SSELVRSFYTNWFSLDSSVRDLFPP--------EMSGQRAAFTRALHWVYSELvaqraEEPIAFLAQLGRDHR-KYGVQPTQYETLRRALQTTLRSHLGSSWTDSVARAAEQSLNLIVGVMSG---
+>gi|296167812|ref|ZP_06849998.1| oxidoreductase FAD-binding subunit [Mycobacterium parascrofulaceum ATCC BAA-614]gi|295897042|gb|EFG76662.1| oxidoreductase FAD-binding subunit [Mycobacterium parascrofulaceum ATCC BAA-614]
+----DALRVLRDAFAPdePgT--GNELVRRFYTHWFGLDVSVRDLFPP--------EMGAQRAAFAHALHYVYGELvaqraQEPVAFLAQLGRDHR-KYGVLPRHYDTLRRALLSTLRTSLGDSWTDSVAAAADQSLNLITGVMRG---
+>gi|196016934|ref|XP_002118316.1| hypothetical protein TRIADDRAFT_62364 [Trichoplax adhaerens]gi|190579092|gb|EDV19196.1| hypothetical protein TRIADDRAFT_62364 [Trichoplax adhaerens]
+-LNYQERQAIIDSWNAISTEKQKYGTILFLKLFELEPRVKSLFTIFdFNEplediIQSPHFRSHAMRFMQSLETGVlMGFDKesCDFLFKSLGSRHH-FYDLKSEFLDVIPECILHTIKKGCGNNWSNETADAWKIATKVLCELFRE---
+>gi|8101728|gb|AAF72633.1|AF258616_1 hemoglobin P polymer precursor [Parartemia zietziana]
+AFSAADIQAIQQTWALAK--PDLMgkGATVFRNLFNEHS-eYQPLFSNLvGY-evtalEGSPELNAHARNVMAQLDVFVRSLENsieLGRSLNQLGKDHV-PRKVNKIHFKEFAEDFVVLMKADLGEEFTPLAESAWKKVFDVMISTIEQG--
+>gi|56698153|ref|YP_168525.1| globin domain-containing protein [Ruegeria pomeroyi DSS-3]gi|56679890|gb|AAV96556.1| globin domain protein [Ruegeria pomeroyi DSS-3]
+-MKDEQIRLVQSSFARVfaR--KAELAERFYVHLFERLPDAKSLFRG-DFFaqke-----------MFATMLASTVRGMNDvqaFHTMGQALARSHA-RFNLRRDDLDKAAEALSAAFRDVFGDTLNAQEQEAWDVAMRRLTRMLAT---
+>gi|268561672|ref|XP_002638386.1| Hypothetical protein CBG18593 [Caenorhabditis briggsae]
+RLSDRQREILQKTFTSIEQDCVRNGLKIFVRLFAEYPRYKLIWPQFrAIPdsslMNAVELRRHASVYLKGLGKIIESMRDeeeLRKSMSRIALAHI-KWNVQRNHVIHMIEPVLEVVKECNGYQLDDETRQAWTVLYQVIANLIE----
+>gi|47115693|sp|Q7M416.1|GLB1_LIOJA RecName: Full=Globin-1; AltName: Full=Myoglobin Igi|298242|gb|AAB25285.1| myoglobin I [Liolophura japonica, Peptide, 145 aa]
+-ISADQAKALKDDIAVVaqN--PNGCGKALFIKMFEMNPGWVEKFPAWkGKSldeiKASDKITNHGGKVINELANWINNINSASGILKSQGTAHK-GRSIGIEYFENVLPVIDATFAQQMGGAYTAAMKDALKAAWtGVIVPGMKAGY-
+>gi|321473021|gb|EFX83989.1| hypothetical protein DAPPUDRAFT_223071 [Daphnia pulex]
+SFSQKDVDVIVNTWNTLK--RrGDFAPKVFIRYFKAKPESQKMFPAFaNVPitelPTNHDFLNSAYTCITSLNYLIPYLKFdHPERCPAFP-KHLKDkYNA--VDLKKLGSIWMTAMQEEMGNAFTNDVRDVWKKAVMAVIEYA-----
+>gi|153876610|ref|ZP_02003843.1| bacterial hemoglobin [Beggiatoa sp. PS]gi|152066926|gb|EDN66157.1| bacterial hemoglobin [Beggiatoa sp. PS]
+------IFEIQSTYEKIlpH--LDEFSRLFYQQLFEIKPAFKILFRQT-------DLRIQKQMVIRMIEvvvQGINNLENFMSIIQRIHQRHY-ELHLKPEDYRLAGQALVLSLEKYFGDEFTPTLKKIWLDFYESIVATM-----
+>gi|320170061|gb|EFW46960.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
+---HETRDAIQSSWALAiQK-HDdhdvtpvaTFVNILFAKLFEVCPETRLVFGH-DMV-------RQGKSlssILTGMLEFVVHPKKLQSQVKRLAHMHV-GLGVTPDMFEAFGFSLLYTIRVRIGSAWNQQIERVWVDTYGGVSNILSQ---
+>gi|156392484|ref|XP_001636078.1| predicted protein [Nematostella vectensis]gi|156223178|gb|EDO44015.1| predicted protein [Nematostella vectensis]
+DMTYEQKYLIRETVDNRecvN--EkDflawRYVCELAAIFLNMHPGLQTYFSEFkHIKidniN---GSHGHPRRLLMAIDNAVTALGDsdsFSAYLVELGRRHH-GmnFRPGPTHFNDLRKCFLSVIKEILATAslWDFQVEEAWNRLFDSITAMMLR---
+>gi|149244943|ref|XP_001527010.1| hypothetical protein LELG_01839 [Lodderomyces elongisporus NRRL YB-4239]gi|146449404|gb|EDK43660.1| hypothetical protein LELG_01839 [Lodderomyces elongisporus NRRL YB-4239]
+NLSQHEIDMVRYTWNKML--MedksnrpNrmpgqfpDLgftpitetpncssvslslfCRQLYMNLLARDPELEKMFPSIkHQSi----S----FAGVMTLIVSQLENLSVLQSYFTSLAKKHS-RvLGIEPPQFELMGEALIQTFKERFGNQFTLELEILWIKVFLFLANSLM----
+>gi|50897135|dbj|BAD34601.1| hemoglobin chain I [Calyptogena kaikoi]
+-VSASDIKNVQDTWTKLY--DqweAVHASKFYNKLFKDNEDISEAFVKAgTG--SGIAMKRQALVFGAILQEFVENLSDptaLSLKIKGLCATHK-Tr-GItNMELFAFALADLVAYMGTT--ISFTAAQKTSWTAVNDVILHQMSS---
+>gi|18029239|gb|AAL56426.1|AF370721_1 cuticle globin [Syngamus trachea]
+------KKHVVDSLVNVplG--NDQTGKDFYKYFFTNHPDLRKYFKGFeTF-taddvQKSEKFRTLGNAFILAIHIVANTYDNepvFRAYVRDNIARHV-ERGLEPSLWKDFWKIWTAFLESK-GTTLSADDKAAWEALRD-----------
+>gi|326430027|gb|EGD75597.1| hypothetical protein PTSG_06664 [Salpingoeca sp. ATCC 50818]
+RLDMEQLKIALGSWTAVVELVPTWHEVFFAELFQAHPETERLLYSSDKSk--S-WNERHMARVGKSVGDVIKSLsnyDDVIEHLTALGTRHA-RYGLHVDQLDLFINAFLWTLGAGLGDSWDHSVKKAWMHVLPFILSPLKS---
+>gi|303271567|ref|XP_003055145.1| predicted protein [Micromonas pusilla CCMP1545]gi|226463119|gb|EEH60397.1| predicted protein [Micromonas pusilla CCMP1545]
+-WQKRKKRFVRQSWQAAceNApcGVDGVGDELLRRFFASHPGFVQLF-NFr---rarlLNSAAWRLHARSVARAIDDFVvvatagadpssSSFDNgawrrTKTALRELGGRHL-VaYKVTPAHYDAFGRALLATVEATArggggggdgggdggggdggGdGGFDRETLAAWTETWEGMRELM-----
+>gi|321477128|gb|EFX88087.1| hypothetical protein DAPPUDRAFT_230332 [Daphnia pulex]
+KLTPHQIHDVQRSWENIR--AnrNSLISAIFVKLFKETPRVQKHFVKFaNVAvdslSGNADYEKQIALVADRLDTIISAMDDklqLLGNINYMRYTHqP-PRAIPRQTFEDFARLLIDGLSAS---GVSGDDMDSWKGVLTIFVNGVS----
+>gi|241950916|ref|XP_002418180.1| conserved hypothetical protein [Candida dubliniensis CD36]gi|223641519|emb|CAX43480.1| conserved hypothetical protein [Candida dubliniensis CD36]
+SLNKIELNQIKSSWSKIN--PKEFYPELYENLFELNPQLRSIFNND-----DSVINYHCDIFGDLFNFIINNIEDdllLNEFLYQFvNENQR-FSSMISQYLEPMGNALIQTFKNELSGQFTSVLELIWIKIFVFVANLLL----
+>gi|82655305|emb|CAI26300.1| hemoglobin [Biomphalaria glabrata]
+GLSDNDREAIDSSWKKLR--SgaggrRNAGIKLVQWMLRTIPNMRDRFNKFdAKQsdaalQRDPEFLAQVDRILGGVESLVNNVDDpvaLKAAIDRLADAHL-SfdPRVGLDYFGPLQTYIHDYIEEALGVGADSDEAKGWTDLFAAFNKVLKE---
+>gi|47230183|emb|CAG10597.1| unnamed protein product [Tetraodon nigroviridis]
+KLSSKDKELIRGSWDSLGKNKVPHGVILFSRLFELDPELLNLFHYTtNCGstqdcLSSPEFLEHVTKVSETVPgeppprlhaeprsvipgDACDRRCSqppgrppLpgglfaqpgakasgsgsqttvvccmIHTVQLFRHLHI-FvHRkkkttcfftcllVCFGLLQMVGESLLYMLQCSLGQAYTASLRQAWLNMYSVVVASMSRGW-
+>gi|312094877|ref|XP_003148174.1| hypothetical protein LOAG_12613 [Loa loa]gi|307756662|gb|EFO15896.1| hypothetical protein LOAG_12613 [Loa loa]
+-----------------------------FRLFSDFPEYKQIWPQFrGIPdsliITANEVKGHGLVYMAGLKSIIDNIKNeekLVKTISKITLAHL-KWHICKDHIMNmLKEVIVILQAD--PHCQGRDVEEAWFTLFDVIGNLV-----
+>gi|20270894|gb|AAM18464.1|AF461710_1 myoglobin [Clonorchis sinensis]gi|23344091|gb|AAN28366.1| 17 kDa myoglobin [Clonorchis sinensis]
+PLSKDEVDaLFEELNPLVS--TteqrTEFGKAVYMALFSAYPEYIQLFTKMqGLTkdnvEASEGIKYYGQTFADSILEMLQCASDdgkLEAVLEKSGKEHI-TRNVTKQQFLSAEEVFIKHFSGVLT---KEENKQSMERFLKHIVPKVAGF--
+>gi|341884590|gb|EGT40525.1| CBN-GLB-28 protein [Caenorhabditis brenneri]
+CLSIEQQKIIKQSWNRIP--KAQFGRAVLNTFINTEGVGHNIFVDR--Dt-----KERHVRQIVDLVQSCVEHLDNLQTGVkpwlDLIGRGHA-NFRITGKHWENFAEALVTTASEWNGPGrRHKETGKAWLIMTSFLADRLAHA--
+>gi|17570331|ref|NP_510537.1| GLoBin family member (glb-28) [Caenorhabditis elegans]gi|6425266|emb|CAB60330.1| C. elegans protein Y15E3A.2, partially confirmed by transcript evidence [Caenorhabditis elegans]
+TISPEHQKLIKRSWNRIP--KAQFGRASLEAFITAAQVTHAIFVDK--Et-----ENRHVKYFVDLVQSCVDNLENLETGVkpwlDLIGRGHA-NFKITGKHWEKFGESLLTTATEWNGPGrRHKETVKAWMVMSSFLADRLAHA--
+>gi|339256778|ref|XP_003370265.1| putative globin [Trichinella spiralis]gi|316965561|gb|EFV50254.1| putative globin [Trichinella spiralis]
+KFTDEEVELLARTWKKDD--FDwlyRIGTDIYTCVFQLAPELKVFFPYVtECEkknqswESSKGFRTQALRFVQILGMAVEKTESrmkdddshLHHRLYKLGETHR-RfalKGFTPTHWKGFVIAVRVAMRRAVeaMPNLTPAecetAIEAWDKLSRYVVHRMEEGY-
+>gi|260903027|ref|ZP_05911422.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]gi|308108400|gb|EFO45940.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]gi|328470864|gb|EGF41775.1| hypothetical protein VP10329_08707 [Vibrio parahaemolyticus 10329]
+--------VFNDSYERCvL--SEHFFERFYAKFWSKGESFRQKFEGVDM-------QKQVRMLKGSIVFFMMTdtSSDARKMMEKYGKKHGIgNIGVKPEDIDIWFESLLETVQECD-YEYNSDVEKAWRACFKSGLEIMKREC-
+>gi|254786906|ref|YP_003074335.1| hypothetical protein TERTU_2953 [Teredinibacter turnerae T7901]gi|237685129|gb|ACR12393.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
+--------LFNDSFEKCL--HGRystFFERFYRNFEQRQPEVRRMFQGTDV-------QRRYDMFEESILILVDYsaNGTASENLERLATLHT-SKGATPEMFDEWMDALIQTLREVD-PQFDDNAEFAWRDILSTGLEYLKNSA-
+>gi|90409683|ref|ZP_01217700.1| hypothetical protein P3TCK_02931 [Photobacterium profundum 3TCK]gi|90329036|gb|EAS45293.1| hypothetical protein P3TCK_02931 [Photobacterium profundum 3TCK]
+--------LYQASYQRCmG--NDDFLPLFYSLFINADIAIKDMFGSTDK-------EQQILTLKASLAMLQPAqdLITHEQLIKSIALRHK-KMNIAPHLFNVWFDCLMQAVKQYD-PQYNEDLHTIWREQLDFGIKLMTKES-
+>gi|339234991|ref|XP_003379050.1| putative globin [Trichinella spiralis]gi|316978322|gb|EFV61323.1| putative globin [Trichinella spiralis]
+-LTKSQRQNVVRSWEKVpN--KRALGEEIYIQIFMHKPMLKSLFP-FrTVPvdqlRNNALFTRQAAIFADFIDCVvgylaIDNGNLIMELSERVGVNHA-LmtsVNFDPEWWVLFANSVLDCIRQYCEPQFiclpisrhiTRKIMIAWRILLKEVVDRMSEAF-
+>gi|289208690|ref|YP_003460756.1| globin [Thioalkalivibrio sp. K90mix]gi|288944321|gb|ADC72020.1| globin [Thioalkalivibrio sp. K90mix]
+-------D-VHQSYGRCrR--AGDFVTRFYEHFLQADPRVKAAFGSTDFSqq---KRALGQA--ISTAISYAEGE-SFVASTMERMGQVHS-RegrVPVEPDLYPIWLDCMVRTAAEID-PRWEPRLEERWRGAMQPAIDLFVRLY-
+>gi|339237741|ref|XP_003380425.1| putative globin [Trichinella spiralis]gi|316976730|gb|EFV59959.1| putative globin [Trichinella spiralis]
+VLNPKEVILTRNVWAALK--EkhqHLVGMEIFRQIFNRRPDLKSLFGV-sALDtemal-NSTRLHRHTMIFQDVIdilMVNISNVDvNIADSLIDLGAQHWVlTkRGFDPAYWLIFGDVLFDLVENVTRKLPsRKRSTNAWRKTIAFMLDCMQIGY-
+>gi|119470819|ref|ZP_01613430.1| hypothetical protein ATW7_05751 [Alteromonadales bacterium TW-7]gi|119446046|gb|EAW27325.1| hypothetical protein ATW7_05751 [Alteromonadales bacterium TW-7]
+----------------------------------------------------------SYILYCTLERIIKNIDNPSSVAPFLSH-HLQflKkLNIQQSDIKPLTDIFYVTLVEHLGRFFNEESHLAWRKVLTYF---------
+>gi|268557836|ref|XP_002636908.1| Hypothetical protein CBG09371 [Caenorhabditis briggsae]
+-IVDDDFELARAHWIQLQK-SNKQGLAirgCFLTMLEKYPQVRPIWG-FgKRiegriDetwkpelVEDFYFRHHCASLQAALNMIIQNKDDrngMRRMLNEMGAHHF-FYDACEPHFEVFQDCLLESMRLVLngGDALDDEIEHSWICLLQTIRLHMGE---
+>gi|170573273|ref|XP_001892405.1| hypothetical protein Bm1_04635 [Brugia malayi]gi|158602064|gb|EDP38764.1| hypothetical protein Bm1_04635 [Brugia malayi]
+-LSEIQQELIRQSWQTIS--AklevneQNFGFFVYRRVFEHNPLLKRAFHVeeYDL-ldsiPREHSIFRQMRLFTNLIALAVRHDNELETeiapAVFRYGQRHY---KFAAEYFNegtvrLFCSQVVCAVADLLEVDIDPACMEAWIDMMRFIGCRLLDG--
+>gi|308466646|ref|XP_003095575.1| CRE-GLB-8 protein [Caenorhabditis remanei]gi|308245099|gb|EFO89051.1| CRE-GLB-8 protein [Caenorhabditis remanei]
+PLTCAQIHLVRALWRQVYTtkGPTVIGASIYHRLCFKNLMVKEQMKQVELPpkfqNRDNFIKAHCKAVAELIDQVVENldhLDNVTNELMRIGRVHA-KvLRgeLTGKLWNTVAETIIDCTLE-WGDrrCRSETVRKAWALIVAFVIEKIKAG--
+>gi|198452804|ref|XP_002137542.1| GA26483 [Drosophila pseudoobscura pseudoobscura]gi|198132084|gb|EDY68100.1| GA26483 [Drosophila pseudoobscura pseudoobscura]
+-FTLCEKVALRQAWNLIR--PreRRFGQDVFYTFLNEWYWSISKFKKGeDI--NIALLHAHALTFIRFVGALINESDPimFQVMINENNQTHS-RCRVGADYIAMLGQALTDYILKVLDKVRSPSLEQGLQRIVE-----------
+>gi|195454050|ref|XP_002074063.1| GK14442 [Drosophila willistoni]gi|194170148|gb|EDW85049.1| GK14442 [Drosophila willistoni]
+-FTLSERLALKQAWNQIK--PkeRRLGQEVFYRFLNEHYFAMYTFQSNeKL--DLHSLHSHARNFVHFIGDLINESDPtmFQFMVHDINQIHN-CRHVPKHYIEMLLQALTDAILKDLHKMTCPTLENGLKRLVD-----------
+>gi|308071704|emb|CBX25204.1| C. elegans protein Y17G7B.6a, partially confirmed by transcript evidence [Caenorhabditis elegans]
+NLSVKQKKLLRQSFNAMN--SGgtflKLMEKIFRRLETKCPDMRSIFLTtaFvnSLSrerQTPPLVkteYDHCKCMVGIFERLIENLENINEQLTMirhYGEKHA-QmaeSGFTGAMIEQFGEISVFVIGSQDVVKFNHETVKAWRLLLACVTDEMKVGF-
+>gi|322493086|emb|CBZ28370.1| adenylate cyclase-like protein [Leishmania mexicana MHOM/GT/2001/U1103]
+--------TVEGTWRILEDegMVEQFGQQLYDELLTRNRRLRVHFYGV-------DIEEQSKSLLRMVGTAVHFYQKpqlTVDMFTKAGARHR-GYGVNAEVFVEMRNAFMRVFSKFVGTDVFQAAEEEWQKFWKYVLDLLVH---
+>gi|341888892|gb|EGT44827.1| CBN-GLB-12 protein [Caenorhabditis brenneri]
+-LNKKDRTLLRETWQRLDE-PkDIVGLIFLDIVNDIEPDLKKVFGV-DRApraamLKMPKFGGHILRfyeFMEQLTSMLGTSENLTGAwqlVRKTGRSHV-KqgfleqnqNQMEKNYFEVVINVFIERLIPYLtgeqelppaegkeqkkvrfAQNYtTSQITDVWKKFLNTVISQMTDSF-
+>gi|206994324|emb|CAR81336.1| C. elegans protein C06H2.5a, partially confirmed by transcript evidence [Caenorhabditis elegans]
+HLSPHQVQLLTSTWPRIK--TqSSLFTQVFKVLMQRSPVCREMFQKMsivgGFSsn-SVCDLNSHTKLLCELLDSLMTDLHQPAkIVLakcQDVGAAHV-NMNekCCGVVFDQLGEAFTELITKVECVRSKREAVKSWMCVISYMADSIKSGY-