diff --git a/modules/mol/alg/pymod/chain_mapping.py b/modules/mol/alg/pymod/chain_mapping.py index 7867619d87c5ef325e2d15cf2601e357aa00fea9..e13a4712815c00daef25154ba1711cf5d4a60a0b 100644 --- a/modules/mol/alg/pymod/chain_mapping.py +++ b/modules/mol/alg/pymod/chain_mapping.py @@ -1077,7 +1077,7 @@ class ChainMapper: return MappingResult(self.target, mdl, self.chem_groups, chem_mapping, mapping, alns, opt_score = opt_qsscore) - def GetRMSDMapping(self, model, strategy = "heuristic", subsampling=None, + def GetRMSDMapping(self, model, strategy = "heuristic", subsampling=50, chem_mapping_result = None, heuristic_n_max_naive = 24): """Identify chain mapping based on minimal RMSD superposition @@ -1110,7 +1110,7 @@ class ChainMapper: "greedy_single", "greedy_iterative"] :type strategy: :class:`str` :param subsampling: If given, only an equally distributed subset - of all CA/C3' positions are used for + of CA/C3' positions in each chain are used for superposition/scoring. :type subsampling: :class:`int` :param chem_mapping_result: Pro param. The result of