diff --git a/modules/bindings/pymod/hhblits.py b/modules/bindings/pymod/hhblits.py index 7ad416987d9959e6047ae07ade6436db94e075ec..eacdcc50e0a54061da9c14adc0fdba00db27a1f0 100644 --- a/modules/bindings/pymod/hhblits.py +++ b/modules/bindings/pymod/hhblits.py @@ -429,17 +429,6 @@ def ParseHHM(profile): return profile_dict -def EstimateMemConsumption(): - """ - Estimate the memory needed by HHblits. By default it uses not more than 3G. - Also for small sequences it already uses quite some memnmory (46AA, 1.48G). - And since the memory consumption could depend on the iterative search runs, - how many hits are found in each step, we just go with 4G, here. - - :return: Assumed memory consumtion - :rtype: (:class:`float`, :class:`str`) - """ - return 4.0, 'G' class HHblits: """ @@ -459,7 +448,6 @@ class HHblits: :param working_dir: Directory for temporary files. Will be created if not present but **not** automatically deleted. :type working_dir: :class:`str` - """ OUTPUT_PREFIX = 'query_hhblits' def __init__(self, query, hhsuite_root, hhblits_bin=None, working_dir=None): @@ -736,7 +724,7 @@ class HHblits: __all__ = ['HHblits', 'HHblitsHit', 'HHblitsHeader', 'ParseHHblitsOutput', 'ParseA3M', 'ParseHHM', - 'ParseHeaderLine', 'EstimateMemConsumption'] + 'ParseHeaderLine'] # LocalWords: HHblits MSA hhblits hhtools PSIPRED addss param nrdb str mact # LocalWords: cpu hhm func ParseHHblitsOutput ss pred conf msa hhsuite dir