diff --git a/modules/mol/base/doc/editors.rst b/modules/mol/base/doc/editors.rst
index 337080e368f7f148249aa9a639cce04d92f8c4eb..73d45b8adb81a4d786b981bf9c0e8ab2b230e3cb 100644
--- a/modules/mol/base/doc/editors.rst
+++ b/modules/mol/base/doc/editors.rst
@@ -383,6 +383,14 @@ Euclidian space.
:param transform: The transformation to be applied
:type transform: :class:`geom.Mat4`
+
+ .. method:: ApplyTransform(transform)
+
+ Apply a transformation to the entity. The transformation is applied to all
+ atoms positions.
+
+ :param transform: The transformation to be applied
+ :type transform: :class:`Transform`
.. method:: SetTransform(transform)
@@ -390,7 +398,26 @@ Euclidian space.
:param transform: The transformation to be applied
:type transform: :class:`geom.Mat4`
+
+ .. method:: SetTransform(transform)
+
+ Set the entity transformation. See also :meth:`ApplyTransform`
+ :param transform: The transformation to be applied
+ :type transform: :class:`Transform`
+
+ .. method:: FixTransform()
+
+ Set transformed positions to new original positions
+
+ .. method:: UpdateICS()
+
+ Immediately update internal coordinate system
+
+ .. method:: ForceUpdate()
+
+ Force spatial organizer and ICS update workaround for delayed editor call from Python garbage collection
+
.. method:: SetAtomPos(atom, pos)
Set the (transformed) position of atom. This method will also update the
@@ -401,8 +428,30 @@ Euclidian space.
:type atom: :class:`ost.mol.AtomHandle`
:param pos: The new position
:type pos: :class:`~ost.geom.Vec3`
+
+ .. method:: SetAtomPos(atom, pos)
+
+ Set the (transformed) position of atom. This method will also update the
+ original position of the atom by applying the inverse of the entity
+ transform.
- .. method:: SetOriginalAtomPos(atom, pos)
+ :param atom_list: must be a valid atom handle list
+ :type atom_list: :class:`ost.mol.AtomHandleList`
+ :param pos_list: a numpy array of floats having a length of 3*atom_list.size()
+ :type pos_list: numpy array
+
+ .. method:: SetAtomPos(atom, pos)
+
+ Set the (transformed) position of atom. This method will also update the
+ original position of the atom by applying the inverse of the entity
+ transform.
+
+ :param atom_list: must be a valid atom handle list
+ :type atom_list: :class:`ost.mol.AtomHandleList`
+ :param pos_list: a list of double having a length of 3*atom_list.size()
+ :type pos_list: list
+
+ .. method:: SetAtomOriginalPos(atom, pos)
Set the original (untransformed) position of the atom. This method will
also update the transformed position by applying the entity transform to
@@ -411,7 +460,67 @@ Euclidian space.
:param atom: must be a valid atom handle
:type atom: :class:`ost.mol.AtomHandle`
:param pos: The new untransformed position
+ :type pos: :class:`~ost.geom.Vec3`
+
+
+ .. method:: SetAtomOriginalPos(atom_list, pos_list)
+
+ Set the original (untransformed) position of the atoms in the given list. This method will
+ also update the transformed position by applying the entity transform to
+ the original pos.
+
+ :param atom_list: must be a valid atom handle list
+ :type atom_list: :class:`ost.mol.AtomHandleList`
+ :param pos_list: a list of double having a length of 3*atom_list.size()
+ :type pos_list: list
+
+ .. method:: SetAtomOriginalPos(atom_list, pos_list)
+
+ Set the original (untransformed) position of the atoms in the given list. This method will
+ also update the transformed position by applying the entity transform to
+ the original pos.
+
+ :param atom_list: must be a valid atom handle list
+ :type atom_list: :class:`ost.mol.AtomHandleList`
+ :param pos_list: a numpy array of floats having a length of 3*atom_list.size()
+ :type pos_list: numpy array
+
+
+ .. method:: SetAtomTransformedPos(atom, pos)
+
+ Set the (transformed) position of atom. This method will also update the
+ original position of the atom by applying the inverse of the entity
+ transform.
+
+ :param atom: must be a valid atom handle
+ :type atom: :class:`ost.mol.AtomHandle`
+ :param pos: The new position
:type pos: :class:`~ost.geom.Vec3`
+
+ .. method:: SetAtomTransformedPos(atom_list, pos_list)
+
+ Set the (transformed) position of atom. This method will also update the
+ original position of the atom by applying the inverse of the entity
+ transform.
+
+ :param atom_list: must be a valid atom handle list
+ :type atom_list: :class:`ost.mol.AtomHandleList`
+ :param pos_list: a numpy array of floats having a length of 3*atom_list.size()
+ :type pos_list: numpy array
+
+ .. method:: SetAtomTransformedPos(atom_list, pos_list)
+
+ Set the (transformed) position of atom. This method will also update the
+ original position of the atom by applying the inverse of the entity
+ transform.
+
+ :param atom_list: must be a valid atom handle list
+ :type atom_list: :class:`ost.mol.AtomHandleList`
+ :param pos_list: a list of double having a length of 3*atom_list.size()
+ :type pos_list: list
+
+
+
Editor for the Internal Coordinate System
--------------------------------------------------------------------------------
@@ -452,6 +561,75 @@ using an :class:`ICSEditor` is undefined and vice versa.
:type angle: :class:`float`
:raises: :exc:`RuntimeError` when the torsion handle is invalid
+
+
+ .. method:: SetTorsionAngle(atom1, atom2, atom3, atom4, angle, update_others=True)
+
+ Set the angles of the given atoms. All connectors at the third atom (A3) will be adjusted accordingly.
+ If you only want to adjust the bond between A3 and A4, and leave
+ the other bonds untouched, use the :meth:`SetDihedralAngle` function
+
+ :see: :meth:`UpdateXCS`
+
+ :param atom1: The first atom. Must be valid
+ :type atom1: :class:`AtomHandle`
+
+ :param atom2: The second atom. Must be valid
+ :type atom2: :class:`AtomHandle`
+
+ :param atom3: The third atom. Must be valid
+ :type atom3: :class:`AtomHandle`
+
+ :param atom4: The third atom. Must be valid
+ :type atom4: :class:`AtomHandle`
+
+ :param angle: The angle in radians
+ :type: angle: :class:`Real`
+
+ :param update_others: Update all the the other torsion angles consequently
+ :type update_others: bool
+
+
+ .. method:: RotateTorsionAngle(torsion, delta, update_others=True)
+
+ Rotate torsion angle
+
+ :see: :meth:`UpdateXCS`
+
+ :param torsion: A valid torsion
+ :type torsion: :class:`TorsionHandle`
+
+ :param delta: delta
+ :type delta: :class:`Real`
+
+ :param update_others: Update all the the other torsion angles consequently
+ :type update_others: bool
+
+
+ .. method:: RotateTorsionAngle(atom1, atom2, atom3, atom4, angle, update_others=True)
+
+ Rotate torsion angle
+
+ :see: :meth:`UpdateXCS`
+
+ :param atom1: The first atom. Must be valid
+ :type atom1: :class:`AtomHandle`
+
+ :param atom2: The second atom. Must be valid
+ :type atom2: :class:`AtomHandle`
+
+ :param atom3: The third atom. Must be valid
+ :type atom3: :class:`AtomHandle`
+
+ :param atom4: The third atom. Must be valid
+ :type atom4: :class:`AtomHandle`
+
+ :param angle: The angle in radians
+ :type: angle: :class:`Real`
+
+ :param update_others: Update all the the other torsion angles consequently
+ :type update_others: bool
+
.. method:: UpdateXCS()