From bdbb502cd94a47673545f3953a0fa2ff1f5194d6 Mon Sep 17 00:00:00 2001
From: Andreas Schenk <andreas_schenk@hms.harvard.edu>
Date: Wed, 29 Aug 2012 10:58:21 -0400
Subject: [PATCH] fixed pdb and mmcif unit tests to correctly handle missing
OST_ROOT env var
---
modules/io/tests/test_io_pdb.cc | 8 +++++++-
modules/io/tests/test_mmcif_reader.cc | 16 ++++++++++++++--
2 files changed, 21 insertions(+), 3 deletions(-)
diff --git a/modules/io/tests/test_io_pdb.cc b/modules/io/tests/test_io_pdb.cc
index b0e54cdc3..d1e9526c5 100644
--- a/modules/io/tests/test_io_pdb.cc
+++ b/modules/io/tests/test_io_pdb.cc
@@ -851,7 +851,13 @@ BOOST_AUTO_TEST_CASE(res_name_mismatch_tolerant)
BOOST_AUTO_TEST_CASE(seqres_import)
{
- SetPrefixPath(getenv("OST_ROOT"));
+ char * ost_root=getenv("OST_ROOT");
+ if(!ost_root){
+ std::cout << "WARNING: skipping SEQRES import unit test. "
+ << "Rule-based builder is required" << std::endl;
+ return;
+ }
+ SetPrefixPath(ost_root);
String lib_path=GetSharedDataPath()+"/compounds.chemlib";
conop::CompoundLibPtr compound_lib=conop::CompoundLib::Load(lib_path);
if (!compound_lib) {
diff --git a/modules/io/tests/test_mmcif_reader.cc b/modules/io/tests/test_mmcif_reader.cc
index eb9c852b5..76125e41d 100644
--- a/modules/io/tests/test_mmcif_reader.cc
+++ b/modules/io/tests/test_mmcif_reader.cc
@@ -139,7 +139,13 @@ BOOST_AUTO_TEST_CASE(mmcif_trystoreidx)
BOOST_AUTO_TEST_CASE(mmcif_convert_seqres)
{
- SetPrefixPath(getenv("OST_ROOT"));
+ char * ost_root=getenv("OST_ROOT");
+ if(!ost_root){
+ std::cout << "WARNING: skipping SEQRES import unit test. "
+ << "Rule-based builder is required" << std::endl;
+ return;
+ }
+ SetPrefixPath(ost_root);
String lib_path=GetSharedDataPath()+"/compounds.chemlib";
conop::CompoundLibPtr compound_lib=conop::CompoundLib::Load(lib_path);
if (!compound_lib) {
@@ -399,7 +405,13 @@ BOOST_AUTO_TEST_CASE(mmcif_entity_tests)
BOOST_AUTO_TEST_CASE(mmcif_entity_poly_tests)
{
- SetPrefixPath(getenv("OST_ROOT"));
+ char * ost_root=getenv("OST_ROOT");
+ if(!ost_root){
+ std::cout << "WARNING: skipping SEQRES import unit test. "
+ << "Rule-based builder is required" << std::endl;
+ return;
+ }
+ SetPrefixPath(ost_root);
String lib_path=GetSharedDataPath()+"/compounds.chemlib";
conop::CompoundLibPtr compound_lib=conop::CompoundLib::Load(lib_path);
if (!compound_lib) {
--
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