From ce6805624240e5a6e34ebb71718703b1d1c1a066 Mon Sep 17 00:00:00 2001
From: Ansgar Philippsen <ansgar.philippsen@gmail.com>
Date: Thu, 5 May 2011 11:22:51 -0400
Subject: [PATCH] fix for BZDNG-253: atom index is now properly maintained upon
entity copy
---
modules/mol/base/src/impl/atom_impl.cc | 1 -
modules/mol/base/src/impl/entity_impl.cc | 2 ++
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/modules/mol/base/src/impl/atom_impl.cc b/modules/mol/base/src/impl/atom_impl.cc
index 29e2c565f..3339ead62 100644
--- a/modules/mol/base/src/impl/atom_impl.cc
+++ b/modules/mol/base/src/impl/atom_impl.cc
@@ -54,7 +54,6 @@ AtomImpl::AtomImpl(const EntityImplPtr& e,
connector_list_(),
fragment_(),
state_(0),
-
index_(index)
{
EntityHandle ent = this->GetEntity();
diff --git a/modules/mol/base/src/impl/entity_impl.cc b/modules/mol/base/src/impl/entity_impl.cc
index 4e311ddc0..58d2bce06 100644
--- a/modules/mol/base/src/impl/entity_impl.cc
+++ b/modules/mol/base/src/impl/entity_impl.cc
@@ -147,6 +147,7 @@ void EntityImpl::ReplicateHierarchy(EntityImplPtr dest)
e3=src_res->GetAtomList().end(); k!=e3; ++k) {
AtomImplPtr src_atom=*k;
AtomImplPtr dst_atom=dst_res->InsertAtom(src_atom);
+ dst_atom->SetIndex(src_atom->GetIndex());
}
}
}
@@ -229,6 +230,7 @@ void EntityImpl::DoCopy(EntityImplPtr dest)
// first copy the chain - residue - atom hierarchy before replicating the
// bond network and the torsions
dest->SetName(this->GetName());
+ dest->next_index_=0;
this->ReplicateHierarchy(dest);
this->DoCopyBondsAndTorsions(dest);
}
--
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