From d58ee27e545245c3246dbf6c6d7f0f828b9088c2 Mon Sep 17 00:00:00 2001
From: Marco Biasini <marco.biasini@unibas.ch>
Date: Mon, 15 Nov 2010 18:43:52 +0100
Subject: [PATCH] only run renumbering unit test when clustalW is installed
---
modules/seq/alg/tests/test_renumber.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/modules/seq/alg/tests/test_renumber.py b/modules/seq/alg/tests/test_renumber.py
index 498c42c86..6d365a9b7 100644
--- a/modules/seq/alg/tests/test_renumber.py
+++ b/modules/seq/alg/tests/test_renumber.py
@@ -112,6 +112,12 @@ class TestRenumber(unittest.TestCase):
if __name__ == "__main__":
# test renumbering
+ # test if clustalw package is available on system, otherwise ignore tests
+ try:
+ clustalw_path=settings.Locate(('clustalw', 'clustalw2'))
+ except(settings.FileNotFound):
+ print "Could not find clustalw executable: ignoring unit tests"
+ exit(0)
try:
unittest.main()
except Exception, e:
--
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