From d659cd694c616f8e12914b6a58b09c86099c399c Mon Sep 17 00:00:00 2001
From: valerio <valerio@5a81b35b-ba03-0410-adc8-b2c5c5119f08>
Date: Mon, 6 Sep 2010 16:05:17 +0000
Subject: [PATCH] Added one more process events to exit function
git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2692 5a81b35b-ba03-0410-adc8-b2c5c5119f08
---
scripts/init.py | 411 ++++++++++++++++++++++++------------------------
1 file changed, 206 insertions(+), 205 deletions(-)
diff --git a/scripts/init.py b/scripts/init.py
index a817bd8e9..2b7a9f24f 100644
--- a/scripts/init.py
+++ b/scripts/init.py
@@ -1,205 +1,206 @@
-import __main__
-import sys
-import optparse
-from ost import io, mol, seq, geom, conop, gui
-import ost
-try:
- from ost import img
- import ost.img.alg
- _img_present=True
-except ImportError:
- _img_present=False
- pass
-import httplib
-
-from PyQt4 import QtGui, QtCore
-from ost.gui.scene.init_inspector import _InitInspector
-from ost.gui.init_menubar import _InitMenuBar
-from ost.gui.init_spacenav import _InitSpaceNav
-from ost.gui.init_context_menu import _InitContextMenu
-from ost.gui.init_splash import _InitSplash
-from ost.gui.dng import termuse
-
-from PyQt4.QtGui import *
-def _my_exit(code):
- QtGui.QApplication.instance().quit()
- sys._exit(code)
-
-sys._exit=sys.exit
-sys.exit=_my_exit
-
-def _InitRuleBasedBuilder():
- compound_lib_path=os.path.join(ost.GetSharedDataPath(), 'compounds.chemlib')
- if os.path.exists(compound_lib_path):
- conop_inst=conop.Conopology.Instance()
- compound_lib=conop.CompoundLib.Load(compound_lib_path)
- conop_inst.RegisterBuilder(conop.RuleBasedBuilder(compound_lib), 'RBB')
- conop_inst.SetDefaultBuilder('RBB')
-
-# switch to rule-based builder for high fidelity if compounds.chemlib is
-# available
-_InitRuleBasedBuilder()
-
-def _CheckRestore():
- settings = QtCore.QSettings()
- restore = settings.value("restore_settings",QtCore.QVariant(False)).toBool()
- if not restore:
- settings.clear()
- settings.setValue("restore_settings",QtCore.QVariant(True))
-
-def _InitPanels(app):
- panels = app.perspective.panels
- panels.AddWidgetToPool('ost.gui.FileBrowser', -1)
- panels.AddWidgetToPool('ost.gui.PythonShell', 1)
- panels.AddWidgetToPool('ost.gui.RemoteLoader', -1)
- panels.AddWidgetToPool('ost.gui.SceneWin', 1)
- panels.AddWidgetToPool('ost.gui.SequenceViewer', 1)
- panels.AddWidgetToPool('ost.gui.MessageWidget', 1)
- if not panels.Restore("ui/perspective/panels"):
- panels.AddWidget(gui.PanelPosition.LEFT_PANEL, app.scene_win)
- panels.AddWidgetByName(gui.PanelPosition.LEFT_PANEL,
- 'ost.gui.FileBrowser', False)
- panels.AddWidgetByName(gui.PanelPosition.LEFT_PANEL,
- 'ost.gui.RemoteLoader', False)
- panels.AddWidget(gui.PanelPosition.BOTTOM_PANEL, app.seq_viewer)
- panels.AddWidget(gui.PanelPosition.BOTTOM_PANEL, app.py_shell)
- panels.AddWidget(gui.PanelPosition.RIGHT_PANEL, app.message_widget)
- return False
- return True
-
-
-def _InitFrontEnd():
- _CheckRestore()
- app=gui.GostyApp.Instance()
- app.SetAppTitle("DNG")
- main_area=app.perspective.main_area
- _InitMenuBar(app)
- _InitSpaceNav(app)
- _InitContextMenu(app)
- main_area.AddPersistentWidget("3D Scene", "gl_win" , app.gl_win, int(QtCore.Qt.WindowMaximized))
- app.perspective.Restore()
- additional_modules=getattr(__main__, 'ADDITIONAL_GUI_MODULES', [])
- for module_name in additional_modules:
- __import__(module_name)
- app.ProcessEvents()
-
- _InitInspector(app)
-
- if not _InitPanels(app):
- _InitSplash()
-
-def _load_files():
- for pdb_id in options.pdb_ids:
- pdb_id, sel=_SplitIDSel(pdb_id)
- selection=_get_selection_query(sel)
- gui.FileLoader.LoadFrom(pdb_id,"pdb.org",selection)
-
- input_files=[_SplitIDSel(arg) for arg in loading_list]
- for f in input_files:
- selection=_get_selection_query(f[1])
- gui.FileLoader.LoadObject(f[0],selection)
-
-def _get_selection_query(sel):
- if len(options.query)>0:
- if len(sel)>0:
- return '(%s) and (%s)' % (options.query, sel)
- else:
- return options.query
- elif len(sel)>0:
- return sel
- return ""
-
-def _execute_script():
- script=script_argv[0]
- sys_argv_backup=sys.argv
- sys.argv=script_argv
- try:
- execfile(script, __main__.__dict__)
- finally:
- sys.argv=sys_argv_backup
-
-def show_help(option, opt, value, parser):
- parser.print_help()
- QtGui.QApplication.instance().exit()
- sys.exit(-1)
-
-def parse_script_option(option, opt, value, parser):
- script_argv.append(value)
- for arg in parser.rargs:
- script_argv.append(arg)
- del parser.rargs[0:len(parser.rargs)]
-
-def _SplitIDSel(name):
- pos=name.find('[')
- if pos>-1:
- return name[:pos], name[pos+1:-1]
- return name, ''
-
-loading_list=[]
-script_argv=[]
-images=[]
-viewers=[]
-usage = 'usage: dng [options] [files to load]'
-class OstOptionParser(optparse.OptionParser):
- def __init__(self, **kwargs):
- optparse.OptionParser.__init__(self, **kwargs)
- def exit(self, status_code, error_message):
- print error_message,
- QtGui.QApplication.instance().exit()
- sys.exit(-1)
-
-parser=OstOptionParser(usage=usage,conflict_handler="resolve")
-parser.add_option("-h", "--help", action="callback", callback=show_help, help="show this help message and exit")
-parser.add_option("-v", "--verbosity_level", action="store", type="int", dest="vlevel", default=0, help="sets the verbosity level [default: %default]")
-parser.add_option("-s", "--script", action="callback", default=[], dest="script", type="string", callback=parse_script_option, help="executes a script (syntax: -s SCRIPT [options] [args]) Anything that follows this option is passed to the script")
-parser.add_option("-p", "--pdb_id", dest="pdb_ids", default=[],action="append", help="PDB file ID. The file will be retrieved from PDB")
-parser.add_option("-b", "--builder", dest="builder", default="HEURISTIC", help="Type of builder used by the progam (either RULE_BASED or HEURISTIC) [default: %default]")
-parser.add_option("-c", "--compound_library", dest="complib", default="compounds.chemlib", help="Compound library for the RULE_BASED builder (only used if --builder option is set to RULE_BASED, otherwise ignored [default: %default]")
-parser.add_option("-q", "--query", dest="query", default="", help="Selection query to be highlighted automatically upon loading (only used together with -p option or when a PDB file is loaded, otherwise ignored [default: None]")
-parser.disable_interspersed_args()
-(options, args) = parser.parse_args()
-
-if len(parser.rargs)!=0:
- for rargs_string in parser.rargs:
- if not rargs_string.endswith('.py'):
- loading_list.append(rargs_string)
- else:
- print 'Error: one of the files to load is a Python script, use -s flag to execute it\n'
- QtGui.QApplication.instance().exit()
- sys.exit(-1)
-
-if len(options.script)!=0:
- script_argv=options.script
-
-if options.builder=="RULE_BASED":
- from ost import conop
- compound_lib=conop.CompoundLib.Load(options.complib)
- rbb=conop.RuleBasedBuilder(compound_lib)
- conop.Conopology.Instance().RegisterBuilder(rbb,'rbb')
- conop.Conopology.Instance().SetDefaultBuilder('rbb')
-
-home = os.getenv('HOME') or os.getenv('USERPROFILE')
-_ostrc=os.path.join(home, '.ostrc')
-if os.path.exists(_ostrc):
- try:
- exec(open(_ostrc))
- except Exception, e:
- print e
-else:
- rcfile=open(_ostrc,"w")
- print >> rcfile, '# This python file is parsed by ost and dng at startup'
- print >> rcfile, '# Its content is made available in the global namespace'
- print >> rcfile, '# It can be used to define custom variables and functions'
- print >> rcfile, '# For example:'
- print >> rcfile, '# IMPORTANT_DIR="path/to/important/dir"'
- rcfile.close()
-
-PushVerbosityLevel(options.vlevel)
-_InitFrontEnd()
-
-if len(loading_list)!=0 or len(options.pdb_ids)!=0:
- _load_files()
- scene.Autoslab()
-if len(script_argv)!=0:
- _execute_script()
-
+import __main__
+import sys
+import optparse
+from ost import io, mol, seq, geom, conop, gui
+import ost
+try:
+ from ost import img
+ import ost.img.alg
+ _img_present=True
+except ImportError:
+ _img_present=False
+ pass
+import httplib
+
+from PyQt4 import QtGui, QtCore
+from ost.gui.scene.init_inspector import _InitInspector
+from ost.gui.init_menubar import _InitMenuBar
+from ost.gui.init_spacenav import _InitSpaceNav
+from ost.gui.init_context_menu import _InitContextMenu
+from ost.gui.init_splash import _InitSplash
+from ost.gui.dng import termuse
+
+from PyQt4.QtGui import *
+def _my_exit(code):
+ QtGui.QApplication.instance().quit()
+ gui.GostyApp.Instance().ProcessEvents()
+ sys._exit(code)
+
+sys._exit=sys.exit
+sys.exit=_my_exit
+
+def _InitRuleBasedBuilder():
+ compound_lib_path=os.path.join(ost.GetSharedDataPath(), 'compounds.chemlib')
+ if os.path.exists(compound_lib_path):
+ conop_inst=conop.Conopology.Instance()
+ compound_lib=conop.CompoundLib.Load(compound_lib_path)
+ conop_inst.RegisterBuilder(conop.RuleBasedBuilder(compound_lib), 'RBB')
+ conop_inst.SetDefaultBuilder('RBB')
+
+# switch to rule-based builder for high fidelity if compounds.chemlib is
+# available
+_InitRuleBasedBuilder()
+
+def _CheckRestore():
+ settings = QtCore.QSettings()
+ restore = settings.value("restore_settings",QtCore.QVariant(False)).toBool()
+ if not restore:
+ settings.clear()
+ settings.setValue("restore_settings",QtCore.QVariant(True))
+
+def _InitPanels(app):
+ panels = app.perspective.panels
+ panels.AddWidgetToPool('ost.gui.FileBrowser', -1)
+ panels.AddWidgetToPool('ost.gui.PythonShell', 1)
+ panels.AddWidgetToPool('ost.gui.RemoteLoader', -1)
+ panels.AddWidgetToPool('ost.gui.SceneWin', 1)
+ panels.AddWidgetToPool('ost.gui.SequenceViewer', 1)
+ panels.AddWidgetToPool('ost.gui.MessageWidget', 1)
+ if not panels.Restore("ui/perspective/panels"):
+ panels.AddWidget(gui.PanelPosition.LEFT_PANEL, app.scene_win)
+ panels.AddWidgetByName(gui.PanelPosition.LEFT_PANEL,
+ 'ost.gui.FileBrowser', False)
+ panels.AddWidgetByName(gui.PanelPosition.LEFT_PANEL,
+ 'ost.gui.RemoteLoader', False)
+ panels.AddWidget(gui.PanelPosition.BOTTOM_PANEL, app.seq_viewer)
+ panels.AddWidget(gui.PanelPosition.BOTTOM_PANEL, app.py_shell)
+ panels.AddWidget(gui.PanelPosition.RIGHT_PANEL, app.message_widget)
+ return False
+ return True
+
+
+def _InitFrontEnd():
+ _CheckRestore()
+ app=gui.GostyApp.Instance()
+ app.SetAppTitle("DNG")
+ main_area=app.perspective.main_area
+ _InitMenuBar(app)
+ _InitSpaceNav(app)
+ _InitContextMenu(app)
+ main_area.AddPersistentWidget("3D Scene", "gl_win" , app.gl_win, int(QtCore.Qt.WindowMaximized))
+ app.perspective.Restore()
+ additional_modules=getattr(__main__, 'ADDITIONAL_GUI_MODULES', [])
+ for module_name in additional_modules:
+ __import__(module_name)
+ app.ProcessEvents()
+
+ _InitInspector(app)
+
+ if not _InitPanels(app):
+ _InitSplash()
+
+def _load_files():
+ for pdb_id in options.pdb_ids:
+ pdb_id, sel=_SplitIDSel(pdb_id)
+ selection=_get_selection_query(sel)
+ gui.FileLoader.LoadFrom(pdb_id,"pdb.org",selection)
+
+ input_files=[_SplitIDSel(arg) for arg in loading_list]
+ for f in input_files:
+ selection=_get_selection_query(f[1])
+ gui.FileLoader.LoadObject(f[0],selection)
+
+def _get_selection_query(sel):
+ if len(options.query)>0:
+ if len(sel)>0:
+ return '(%s) and (%s)' % (options.query, sel)
+ else:
+ return options.query
+ elif len(sel)>0:
+ return sel
+ return ""
+
+def _execute_script():
+ script=script_argv[0]
+ sys_argv_backup=sys.argv
+ sys.argv=script_argv
+ try:
+ execfile(script, __main__.__dict__)
+ finally:
+ sys.argv=sys_argv_backup
+
+def show_help(option, opt, value, parser):
+ parser.print_help()
+ QtGui.QApplication.instance().exit()
+ sys.exit(-1)
+
+def parse_script_option(option, opt, value, parser):
+ script_argv.append(value)
+ for arg in parser.rargs:
+ script_argv.append(arg)
+ del parser.rargs[0:len(parser.rargs)]
+
+def _SplitIDSel(name):
+ pos=name.find('[')
+ if pos>-1:
+ return name[:pos], name[pos+1:-1]
+ return name, ''
+
+loading_list=[]
+script_argv=[]
+images=[]
+viewers=[]
+usage = 'usage: dng [options] [files to load]'
+class OstOptionParser(optparse.OptionParser):
+ def __init__(self, **kwargs):
+ optparse.OptionParser.__init__(self, **kwargs)
+ def exit(self, status_code, error_message):
+ print error_message,
+ QtGui.QApplication.instance().exit()
+ sys.exit(-1)
+
+parser=OstOptionParser(usage=usage,conflict_handler="resolve")
+parser.add_option("-h", "--help", action="callback", callback=show_help, help="show this help message and exit")
+parser.add_option("-v", "--verbosity_level", action="store", type="int", dest="vlevel", default=0, help="sets the verbosity level [default: %default]")
+parser.add_option("-s", "--script", action="callback", default=[], dest="script", type="string", callback=parse_script_option, help="executes a script (syntax: -s SCRIPT [options] [args]) Anything that follows this option is passed to the script")
+parser.add_option("-p", "--pdb_id", dest="pdb_ids", default=[],action="append", help="PDB file ID. The file will be retrieved from PDB")
+parser.add_option("-b", "--builder", dest="builder", default="HEURISTIC", help="Type of builder used by the progam (either RULE_BASED or HEURISTIC) [default: %default]")
+parser.add_option("-c", "--compound_library", dest="complib", default="compounds.chemlib", help="Compound library for the RULE_BASED builder (only used if --builder option is set to RULE_BASED, otherwise ignored [default: %default]")
+parser.add_option("-q", "--query", dest="query", default="", help="Selection query to be highlighted automatically upon loading (only used together with -p option or when a PDB file is loaded, otherwise ignored [default: None]")
+parser.disable_interspersed_args()
+(options, args) = parser.parse_args()
+
+if len(parser.rargs)!=0:
+ for rargs_string in parser.rargs:
+ if not rargs_string.endswith('.py'):
+ loading_list.append(rargs_string)
+ else:
+ print 'Error: one of the files to load is a Python script, use -s flag to execute it\n'
+ QtGui.QApplication.instance().exit()
+ sys.exit(-1)
+
+if len(options.script)!=0:
+ script_argv=options.script
+
+if options.builder=="RULE_BASED":
+ from ost import conop
+ compound_lib=conop.CompoundLib.Load(options.complib)
+ rbb=conop.RuleBasedBuilder(compound_lib)
+ conop.Conopology.Instance().RegisterBuilder(rbb,'rbb')
+ conop.Conopology.Instance().SetDefaultBuilder('rbb')
+
+home = os.getenv('HOME') or os.getenv('USERPROFILE')
+_ostrc=os.path.join(home, '.ostrc')
+if os.path.exists(_ostrc):
+ try:
+ exec(open(_ostrc))
+ except Exception, e:
+ print e
+else:
+ rcfile=open(_ostrc,"w")
+ print >> rcfile, '# This python file is parsed by ost and dng at startup'
+ print >> rcfile, '# Its content is made available in the global namespace'
+ print >> rcfile, '# It can be used to define custom variables and functions'
+ print >> rcfile, '# For example:'
+ print >> rcfile, '# IMPORTANT_DIR="path/to/important/dir"'
+ rcfile.close()
+
+PushVerbosityLevel(options.vlevel)
+_InitFrontEnd()
+
+if len(loading_list)!=0 or len(options.pdb_ids)!=0:
+ _load_files()
+ scene.Autoslab()
+if len(script_argv)!=0:
+ _execute_script()
+
--
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