diff --git a/modules/doc/install.rst b/modules/doc/install.rst index 3b10fa52f52c26bddcd921df7fba420abe53f224..b92727bed28fe9e9885ac5f940f8b92ab3a768b5 100644 --- a/modules/doc/install.rst +++ b/modules/doc/install.rst @@ -68,7 +68,7 @@ OpenStructure uses `git` as the revision control system. The main repository can git clone https://dng.biozentrum.unibas.ch/git/ost.git <directory-name> -The above command will clone OpenStructre into the directory called `directory-name`. If omitted, the directory will be called ost. +The above command will clone OpenStructure into the directory called `directory-name`. If omitted, the directory will be called ost. .. note:: @@ -138,12 +138,13 @@ By default, `CMake <http://cmake.org>`_ searches the standard directories for de activates the rule-based-builder. The compound library is based on the component dictionary released by the PDB, and it specifies atoms of a certain residue or connectivities between atoms etc. The - <a href="/docs/conop/compoundlib/?highlight=component"> compound library - itself is created</a> from the component dictionary. By default this is - switched off. + :doc:`conop/compoundlib` compound library itself is created from the + component dictionary by calling the OpenStructure chemdict_tool. + By default this is switched off. * `COMPILE_TMTOOLS` will activate bindings for TMAlign and TMScore, which are - then available at python level. By default this is switched off. + then available at python level. This option requires a Fortran compiler. + By default this option is switched off. * `USE_NUMPY` allows OpenStructure to pass back data in NumPy format. By default this is switched off. @@ -153,6 +154,7 @@ Build Options * `ENABLE_GUI` controls whether to build the graphical user interface module. By default it is set to true. + * `ENABLE_IMG` controls whether to build the image processing module. This will enable support for density maps, and general image processing in 1, 2 an 3 dimensions. By default it is set to true.