From d7d4e897333b60aa272e45d86f6738d2975343a6 Mon Sep 17 00:00:00 2001
From: Juergen Haas <juergen.haas@unibas.ch>
Date: Thu, 5 Jul 2012 06:10:38 +0200
Subject: [PATCH] installation docu: mentioning fortran as requirement for
TMTOOLS; fixing typos; fixing link to compoundlib docu
---
modules/doc/install.rst | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git a/modules/doc/install.rst b/modules/doc/install.rst
index 3b10fa52f..b92727bed 100644
--- a/modules/doc/install.rst
+++ b/modules/doc/install.rst
@@ -68,7 +68,7 @@ OpenStructure uses `git` as the revision control system. The main repository can
git clone https://dng.biozentrum.unibas.ch/git/ost.git <directory-name>
-The above command will clone OpenStructre into the directory called `directory-name`. If omitted, the directory will be called ost.
+The above command will clone OpenStructure into the directory called `directory-name`. If omitted, the directory will be called ost.
.. note::
@@ -138,12 +138,13 @@ By default, `CMake <http://cmake.org>`_ searches the standard directories for de
activates the rule-based-builder. The compound library is based on
the component dictionary released by the PDB, and it specifies atoms
of a certain residue or connectivities between atoms etc. The
- <a href="/docs/conop/compoundlib/?highlight=component"> compound library
- itself is created</a> from the component dictionary. By default this is
- switched off.
+ :doc:`conop/compoundlib` compound library itself is created from the
+ component dictionary by calling the OpenStructure chemdict_tool.
+ By default this is switched off.
* `COMPILE_TMTOOLS` will activate bindings for TMAlign and TMScore, which are
- then available at python level. By default this is switched off.
+ then available at python level. This option requires a Fortran compiler.
+ By default this option is switched off.
* `USE_NUMPY` allows OpenStructure to pass back data in NumPy format. By
default this is switched off.
@@ -153,6 +154,7 @@ Build Options
* `ENABLE_GUI` controls whether to build the graphical user interface module. By
default it is set to true.
+
* `ENABLE_IMG` controls whether to build the image processing module. This will
enable support for density maps, and general image processing in 1, 2 an 3
dimensions. By default it is set to true.
--
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