From d8ede1013248aa1f65a7c6249545d65229fd03cf Mon Sep 17 00:00:00 2001
From: juergen <juergen@5a81b35b-ba03-0410-adc8-b2c5c5119f08>
Date: Thu, 11 Mar 2010 15:20:20 +0000
Subject: [PATCH] fixes to hhsearch and exporting CreateAlignmentq
git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@1811 5a81b35b-ba03-0410-adc8-b2c5c5119f08
---
modules/io/pymod/hhsearch.py | 2 +-
modules/seq/base/pymod/export_sequence.cc | 1 +
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/modules/io/pymod/hhsearch.py b/modules/io/pymod/hhsearch.py
index 5b8ebf3f6..a9f9e8402 100644
--- a/modules/io/pymod/hhsearch.py
+++ b/modules/io/pymod/hhsearch.py
@@ -115,7 +115,7 @@ class HHSearchResult:
q_seq+=re.split('\s+', line)[3]
if line.startswith('T'):
t_seq+=re.split('\s+', line)[3]
- ali=seq.MultiSeqAlignment()
+ ali=seq.AlignmentHandle()
ali.AddSequence(seq.Sequence.FromString('query', q_seq))
ali.AddSequence(seq.Sequence.FromString('target', t_seq))
return ali
diff --git a/modules/seq/base/pymod/export_sequence.cc b/modules/seq/base/pymod/export_sequence.cc
index 41e36d275..01e7417f3 100644
--- a/modules/seq/base/pymod/export_sequence.cc
+++ b/modules/seq/base/pymod/export_sequence.cc
@@ -207,6 +207,7 @@ void export_sequence()
def("SequenceToInfo", &SequenceToInfo);
def("SequenceListToInfo", &SequenceListToInfo);
def("SequenceFromInfo", &SequenceFromInfo);
+ def("CreateAlignment", &CreateAlignment);
def("AlignmentFromSequenceList", &AlignmentFromSequenceList);
def("SequenceListFromInfo", &SequenceListFromInfo);
}
--
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