diff --git a/modules/config/base.hh b/modules/config/base.hh
index 02bdc2b4c97929fedc6b5742ec59860c1e7190e6..2019437b5b47828492ec8de2422a77287d650092 100644
--- a/modules/config/base.hh
+++ b/modules/config/base.hh
@@ -19,7 +19,6 @@
#ifndef OST_BASE_HH
#define OST_BASE_HH
-#include <string>
#include <cmath>
#include <math.h>
#include <complex>
diff --git a/modules/gui/src/python_shell/gutter.cc b/modules/gui/src/python_shell/gutter.cc
index bb8cb98ee3748e8ecccc22396bc2a0725715127b..eed96f4573cc1b8ea35d5d5e51cd8de0ae1c257e 100644
--- a/modules/gui/src/python_shell/gutter.cc
+++ b/modules/gui/src/python_shell/gutter.cc
@@ -49,7 +49,7 @@ void Gutter::paintEvent(QPaintEvent* paint_event)
QPainter painter(this);
painter.setPen(QPen(Qt::black));
painter.fillRect(paint_event->rect(), QBrush(Qt::lightGray));
- for (GutterBlockList::const_iterator it=blocks.begin();
+ for (GutterBlockList::const_iterator it=blocks.begin();
it!=blocks.end(); ++it) {
if (it->type & BLOCKTYPE_ACTIVE) {
QColor green(Qt::green);
diff --git a/modules/gui/src/python_shell/python_completer.cc b/modules/gui/src/python_shell/python_completer.cc
index 9ec41df66d7a4e57fdf61a5a30809a5b3a596504..af7f93d380726b0d520f496645a2f519f2fd09b8 100644
--- a/modules/gui/src/python_shell/python_completer.cc
+++ b/modules/gui/src/python_shell/python_completer.cc
@@ -20,10 +20,10 @@
Authors: Marco Biasini, Andreas Schenk
*/
-#include <iostream>
#include "python_completer.hh"
#include "python_namespace_tree_model.hh"
+#include <iostream>
#include <QStringList>
diff --git a/modules/gui/src/python_shell/python_context_parser.hh b/modules/gui/src/python_shell/python_context_parser.hh
index ddc2c93ddd19b9bf65169fb062dac94a0999ba93..0e5df593f494fb57edb1c3dc188ca5e5b32533b6 100644
--- a/modules/gui/src/python_shell/python_context_parser.hh
+++ b/modules/gui/src/python_shell/python_context_parser.hh
@@ -23,10 +23,10 @@
Author: Marco Biasini
*/
+#include "python_tokenizer.hh"
#include <vector>
#include <iostream>
-#include "python_tokenizer.hh"
namespace ost { namespace gui {
diff --git a/modules/gui/src/python_shell/python_interpreter.hh b/modules/gui/src/python_shell/python_interpreter.hh
index 5f12d6bbde982697f00350bcf2a1160992000e73..3cbe055cbb6dc0afd060a19b1c54b495e4372bb2 100644
--- a/modules/gui/src/python_shell/python_interpreter.hh
+++ b/modules/gui/src/python_shell/python_interpreter.hh
@@ -27,14 +27,11 @@
#ifndef PYTHON_INTERPRETER_HH
#define PYTHON_INTERPRETER_HH
-#include <vector>
-#include <ost/gui/module_config.hh>
-
-#include <ost/gui/module_config.hh>
#include "python_interpreter_worker.hh"
#include "output_redirector.hh"
#include "main_thread_runner.hh"
+#include <ost/gui/module_config.hh>
#include <QQueue>
#include <QMetaType>
diff --git a/modules/gui/src/python_shell/python_interpreter_worker.cc b/modules/gui/src/python_shell/python_interpreter_worker.cc
index 68f38a247f0026555ee87ff9d12da4b41579c217..e75f484600f3b749756042783316ece6697991fb 100644
--- a/modules/gui/src/python_shell/python_interpreter_worker.cc
+++ b/modules/gui/src/python_shell/python_interpreter_worker.cc
@@ -1,3 +1,23 @@
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
+
#include "python_interpreter_worker.hh"
#include "python_interpreter.hh"
diff --git a/modules/gui/src/python_shell/python_interpreter_worker.hh b/modules/gui/src/python_shell/python_interpreter_worker.hh
index ed80f6fe78b308f1269a5a723bffe46883fbe35b..557604900e046dee0c46fec77550a4b1e2292ad4 100644
--- a/modules/gui/src/python_shell/python_interpreter_worker.hh
+++ b/modules/gui/src/python_shell/python_interpreter_worker.hh
@@ -1,14 +1,34 @@
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
+
#ifndef PYTHON_INTERPRETER_WORKER_HH
#define PYTHON_INTERPRETER_WORKER_HH
-#include <csignal>
-#include <utility>
// workaround for QTBUG-22829: https://bugreports.qt-project.org/browse/QTBUG-22829
#ifndef Q_MOC_RUN
#include <boost/python.hpp>
#include <boost/shared_ptr.hpp>
#endif
#include "output_redirector.hh"
+#include <csignal>
+#include <utility>
#include <QObject>
#include <QQueue>
diff --git a/modules/gui/src/python_shell/python_namespace_tree_item.cc b/modules/gui/src/python_shell/python_namespace_tree_item.cc
index e16bbede4c7b3726bff8bec166f8b8caa8988477..5c59e235810eb61c730cc36b11989aa416c46901 100644
--- a/modules/gui/src/python_shell/python_namespace_tree_item.cc
+++ b/modules/gui/src/python_shell/python_namespace_tree_item.cc
@@ -17,9 +17,9 @@
// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
//------------------------------------------------------------------------------
+#include "python_namespace_tree_item.hh"
#include <ost/base.hh>
-#include "python_namespace_tree_item.hh"
diff --git a/modules/gui/src/python_shell/python_shell.cc b/modules/gui/src/python_shell/python_shell.cc
index cdd9c28c3315058b54bcfa4c9e1a206b4a20fcbc..6690506d2953caa46bdbcfe3218e2b372fc02f96 100644
--- a/modules/gui/src/python_shell/python_shell.cc
+++ b/modules/gui/src/python_shell/python_shell.cc
@@ -21,11 +21,11 @@
Author: Marco Biasini
*/
+#include "python_shell.hh"
+#include "python_shell_widget.hh"
#include <ost/gui/gosty_app.hh>
#include <ost/gui/widget_registry.hh>
-#include "python_shell.hh"
-#include "python_shell_widget.hh"
#include <QVBoxLayout>
namespace ost { namespace gui {
diff --git a/modules/gui/src/python_shell/python_shell_fw.hh b/modules/gui/src/python_shell/python_shell_fw.hh
index d70eb83d841be3ab6e26fe941e81702c0bd41177..9abb7cae16532955fe0d1177fab66a4988b91492 100644
--- a/modules/gui/src/python_shell/python_shell_fw.hh
+++ b/modules/gui/src/python_shell/python_shell_fw.hh
@@ -23,7 +23,6 @@
Author: Andreas Schenk
*/
-#include <vector>
namespace ost { namespace gui {
// fw decl
@@ -51,7 +50,6 @@ struct GutterBlock{
BlockType type;
};
-typedef std::vector<GutterBlock> GutterBlockList;
}}//ns
diff --git a/modules/gui/src/python_shell/python_shell_widget.cc b/modules/gui/src/python_shell/python_shell_widget.cc
index 9adafdd7c764e8727f3a7dab0912c4b82347bbd3..9c816f5dcb6585bfba7af6ec202bae17e08ad75a 100644
--- a/modules/gui/src/python_shell/python_shell_widget.cc
+++ b/modules/gui/src/python_shell/python_shell_widget.cc
@@ -20,21 +20,20 @@
Authors: Marco Biasini, Andreas Schenk
*/
-#include <iostream>
#include "python_shell_widget.hh"
-
+#include "state_machine.hh"
+#include "state.hh"
#include "gutter.hh"
-
#include "string_literal_positions.hh"
-
#include "python_shell_text_document_layout.hh"
-
#include "python_completer.hh"
#include "path_completer.hh"
#include "transition.hh"
+#include <iostream>
+
#include <QApplication>
#include <QFontMetrics>
#include <QClipboard>
diff --git a/modules/gui/src/python_shell/python_shell_widget.hh b/modules/gui/src/python_shell/python_shell_widget.hh
index f2b2dbcedefc22696a6b5f1d7cf0b0f4753f0fdf..090272bbbd00e3b5155a917e2fc566c2c41cfc44 100644
--- a/modules/gui/src/python_shell/python_shell_widget.hh
+++ b/modules/gui/src/python_shell/python_shell_widget.hh
@@ -25,13 +25,11 @@
#define OST_GUI_PYTHON_SHELL_WIDGET_HH
-#include <ost/gui/module_config.hh>
#include "python_interpreter.hh"
#include "shell_history.hh"
#include "python_shell_fw.hh"
#include "python_syntax_highlighter.hh"
-#include "state_machine.hh"
-#include "state.hh"
+#include <ost/gui/module_config.hh>
#include <QPlainTextEdit>
#include <QHash>
@@ -41,7 +39,10 @@ namespace ost { namespace gui {
class Gutter;
class PythonCompleter;
class PathCompleter;
+class State;
+class StateMachine;
+typedef std::vector<GutterBlock> GutterBlockList;
class DLLEXPORT_OST_GUI PythonShellWidget : public QPlainTextEdit {
diff --git a/modules/gui/src/python_shell/python_syntax_highlighter.cc b/modules/gui/src/python_shell/python_syntax_highlighter.cc
index cca2c0b8b088550a007c4aacf7c6789961a279ad..72ab4be2a096a3cab15fc0849eff8fcbb42dbc6d 100644
--- a/modules/gui/src/python_shell/python_syntax_highlighter.cc
+++ b/modules/gui/src/python_shell/python_syntax_highlighter.cc
@@ -20,14 +20,13 @@
Authors: Marco Biasini, Andreas Schenk
*/
-#include <iostream>
#include "python_shell.hh"
#include "string_literal_positions.hh"
-
#include "python_syntax_highlighter.hh"
#include "python_context_parser.hh"
+#include <iostream>
#include <QDebug>
#include <QTextCursor>
diff --git a/modules/gui/src/python_shell/shell_history.hh b/modules/gui/src/python_shell/shell_history.hh
index 20e0405afe4aec3b1d17b7533b9750c0b50af57e..87e082af623c137959144216a5778698a545630d 100644
--- a/modules/gui/src/python_shell/shell_history.hh
+++ b/modules/gui/src/python_shell/shell_history.hh
@@ -22,8 +22,8 @@
Author: Andreas Schenk
*/
-#include <vector>
#include "python_shell_fw.hh"
+#include <vector>
#include <QString>
namespace ost { namespace gui {
diff --git a/modules/gui/src/python_shell/state.cc b/modules/gui/src/python_shell/state.cc
index 381fffff4d120cf891fa2b5e552258cdfafc5274..f5b7c522306c5f96df8b0817005f30f02a70800a 100644
--- a/modules/gui/src/python_shell/state.cc
+++ b/modules/gui/src/python_shell/state.cc
@@ -1,7 +1,26 @@
-#include <cassert>
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
#include "transition.hh"
#include "state.hh"
#include "state_machine.hh"
+#include <cassert>
namespace ost { namespace gui {
diff --git a/modules/gui/src/python_shell/state.hh b/modules/gui/src/python_shell/state.hh
index a6c05c36b3b6fc94db8498caf41a0fa71f90323f..679542078d8a17086c099b0dfa6e9df04173ae68 100644
--- a/modules/gui/src/python_shell/state.hh
+++ b/modules/gui/src/python_shell/state.hh
@@ -1,3 +1,22 @@
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
#ifndef PYTHON_SHELL_STATE_HH
#define PYTHON_SHELL_STATE_HH
diff --git a/modules/gui/src/python_shell/state_machine.cc b/modules/gui/src/python_shell/state_machine.cc
index 9ce3f37bc85946686bcb1d34f3593b37789336ce..048ed68eb83a0bdd2324d451e7f4f6f7aea65ed2 100644
--- a/modules/gui/src/python_shell/state_machine.cc
+++ b/modules/gui/src/python_shell/state_machine.cc
@@ -1,3 +1,22 @@
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
#include <QEvent>
#include <QKeyEvent>
#include <QMouseEvent>
diff --git a/modules/gui/src/python_shell/state_machine.hh b/modules/gui/src/python_shell/state_machine.hh
index ac265dfd91e898d3af9ef483de11076a846cafdb..8db26c10a64f521ab5e27021e78e4db391b7b245 100644
--- a/modules/gui/src/python_shell/state_machine.hh
+++ b/modules/gui/src/python_shell/state_machine.hh
@@ -1,3 +1,22 @@
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
#ifndef PYTHON_SHELL_STATE_MACHINE_HH
#define PYTHON_SHELL_STATE_MACHINE_HH
diff --git a/modules/gui/src/python_shell/transition.cc b/modules/gui/src/python_shell/transition.cc
index b2a07eb6b724273523dbf78121b768f260977f12..9916657713fe9be0a0c56913cffaf5dc312b468c 100644
--- a/modules/gui/src/python_shell/transition.cc
+++ b/modules/gui/src/python_shell/transition.cc
@@ -1,7 +1,26 @@
-#include <cassert>
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
#include "python_shell_widget.hh"
#include "transition.hh"
#include "state.hh"
+#include <cassert>
#include <QKeyEvent>
#include <QMouseEvent>
diff --git a/modules/gui/src/python_shell/transition.hh b/modules/gui/src/python_shell/transition.hh
index a17b38ee5c55b85b2915651bb2b1e9e28020fae0..a3550f4280f8f186023f5750aeb7feee8fb5da92 100644
--- a/modules/gui/src/python_shell/transition.hh
+++ b/modules/gui/src/python_shell/transition.hh
@@ -1,12 +1,31 @@
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
#ifndef PYTHON_SHELL_TRANSITION_HH
#define PYTHON_SHELL_TRANSITION_HH
-#include <utility>
#include <ost/gui/python_shell/python_interpreter.hh>
+#include "transition_guard.hh"
+#include <utility>
#include <QObject>
#include <QEvent>
-#include "transition_guard.hh"
//fw decl
class QKeyEvent;
class QMouseEvent;
diff --git a/modules/gui/src/python_shell/transition_guard.cc b/modules/gui/src/python_shell/transition_guard.cc
index 940d5bba15a96f7605ffa90348cf6f64933f9994..acf6ff2c95a35cef4b689c22a3c22822e82ff7c0 100644
--- a/modules/gui/src/python_shell/transition_guard.cc
+++ b/modules/gui/src/python_shell/transition_guard.cc
@@ -1,7 +1,27 @@
-#include <iostream>
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
+
#include "transition_guard.hh"
#include "python_shell_widget.hh"
#include "shell_history.hh"
+#include <iostream>
namespace ost { namespace gui {
diff --git a/modules/gui/src/python_shell/transition_guard.hh b/modules/gui/src/python_shell/transition_guard.hh
index 5a2906481c36da41fc7ef1d5aefecfc853d76ad9..c3b20201a7d5f7a3b0e1c2d21c34f819a7294ac3 100644
--- a/modules/gui/src/python_shell/transition_guard.hh
+++ b/modules/gui/src/python_shell/transition_guard.hh
@@ -1,3 +1,22 @@
+//------------------------------------------------------------------------------
+// This file is part of the OpenStructure project <www.openstructure.org>
+//
+// Copyright (C) 2008-2014 by the OpenStructure authors
+//
+// This library is free software; you can redistribute it and/or modify it under
+// the terms of the GNU Lesser General Public License as published by the Free
+// Software Foundation; either version 3.0 of the License, or (at your option)
+// any later version.
+// This library is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+// details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with this library; if not, write to the Free Software Foundation, Inc.,
+// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+//------------------------------------------------------------------------------
+
#ifndef TRANSITION_GUARD_HH
#define TRANSITION_GUARD_HH