diff --git a/actions/ost-compare-structures b/actions/ost-compare-structures
index fc08c403c4cf898aff7a8568ddb797c9a53acdaf..bdd5913440d34336adaebd622d86fde225936e74 100644
--- a/actions/ost-compare-structures
+++ b/actions/ost-compare-structures
@@ -381,6 +381,8 @@ def _ParseArgs():
               "of another chain. CAPRI suggests to lower the default of 10A to "
               "8A in combination with only considering CB atoms for "
               "protein-peptide interactions. "
+              "Note that the resulting DockQ is not evaluated for these "
+              "slightly updated fnat and irmsd (lrmsd stays the same)."
               "This flag has no influence on patch_dockq scores."))
 
     parser.add_argument(