From dcec97639f879d0b5854ec6f9f6ca9a6a9046962 Mon Sep 17 00:00:00 2001
From: stefan <stefan@5a81b35b-ba03-0410-adc8-b2c5c5119f08>
Date: Tue, 11 May 2010 09:00:33 +0000
Subject: [PATCH] Fixed AlignmentHandle (replace region)
git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2231 5a81b35b-ba03-0410-adc8-b2c5c5119f08
---
modules/seq/base/src/alignment_handle.cc | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/modules/seq/base/src/alignment_handle.cc b/modules/seq/base/src/alignment_handle.cc
index 62514274c..39db09fa5 100644
--- a/modules/seq/base/src/alignment_handle.cc
+++ b/modules/seq/base/src/alignment_handle.cc
@@ -174,7 +174,7 @@ void AlignmentHandle::Replace(const AlignedRegion& aln_r, int start, int end){
"to share the same number of sequences");
}
int aln_rStart=aln_r.GetStart();
- int aln_rEnd=aln_r.GetEnd();
+ int aln_rEnd=aln_r.GetEnd()-1;
AlignmentHandle aln=aln_r.GetAlignmentHandle();
//iterate over sequences and replace part of sequences with the substrings
//from aligned region
--
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