From df390f169f9cadfa396b7dc49eff7fd58b5c5dbc Mon Sep 17 00:00:00 2001
From: Gerardo Tauriello <gerardo.tauriello@unibas.ch>
Date: Tue, 7 Aug 2018 10:48:34 +0200
Subject: [PATCH] Doc: fixed alignment i/o examples.
---
modules/io/doc/io.rst | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/modules/io/doc/io.rst b/modules/io/doc/io.rst
index 580c6650a..ccff89f86 100644
--- a/modules/io/doc/io.rst
+++ b/modules/io/doc/io.rst
@@ -142,8 +142,8 @@ Loading sequence or alignment files
myseq = io.LoadSequence('seq.fasta')
# for obtaining a SequenceList
seqlist = io.LoadSequenceList('seqs.fasta')
- # or for multiple aligned fasta files use
- aln = io.LoadAlignment('algnm.aln',format="clustal")
+ # or for multiple alignments (here from CLUSTAL)
+ aln = io.LoadAlignment('algnm.aln', format="clustal")
For a list of file formats supported by :func:`LoadSequence` see
:doc:`sequence_formats`.
@@ -212,11 +212,11 @@ Saving Sequence Data
.. code-block:: python
# recognizes FASTA file by file extension
- io.SaveSequence(myseq,'seq.fasta')
+ io.SaveSequence(myseq, 'seq.fasta')
# for saving a SequenceList
- io.SaveSequenceList(seqlist,'seqlist.fasta')
- # or multiple aligned fasta files
- io.SaveAlignment(aln,'algnm.aln',format="clustal")
+ io.SaveSequenceList(seqlist, 'seqlist.fasta')
+ # or for multiple alignments (here in FASTA format)
+ io.SaveAlignment(aln, 'aln.fasta')
For a list of file formats supported by :func:`SaveSequence` see
:doc:`sequence_formats`.
--
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