From e300c56c60927de0d013ef70212f48820caf2855 Mon Sep 17 00:00:00 2001 From: Stefan Bienert <stefan.bienert@unibas.ch> Date: Tue, 23 Jan 2024 18:00:22 +0100 Subject: [PATCH] mmCIF writer docs update --- modules/io/doc/mmcif.rst | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/modules/io/doc/mmcif.rst b/modules/io/doc/mmcif.rst index 5a1705cb9..97d411507 100644 --- a/modules/io/doc/mmcif.rst +++ b/modules/io/doc/mmcif.rst @@ -1669,9 +1669,9 @@ The content of the file written: mmCIF Writer ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -The OpenStructure mmCIF writer considers the following data categories. The -listed attributes are written which fulfills all dependencies in an mmCIF -file according to `mmcif_pdbx_v50 <https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Index/>`_. +Data categories considered by the OpenStructure mmCIF writer are described in +the following. The listed attributes are written to fulfill all dependencies in +a mmCIF file according to `mmcif_pdbx_v50 <https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Index/>`_. * `_atom_site <https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/atom_site.html>`_ @@ -1710,6 +1710,12 @@ file according to `mmcif_pdbx_v50 <https://mmcif.wwpdb.org/dictionaries/mmcif_pd * pdbx_seq_one_letter_code * pdbx_seq_one_letter_code_can +* `_entity_poly_seq <https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/pdbx_reference_entity_poly_seq.html>`_ + + * entity_id + * mon_id + * num + * `_pdbx_poly_seq_scheme <https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/pdbx_poly_seq_scheme.html>`_ * asym_id @@ -1721,13 +1727,6 @@ file according to `mmcif_pdbx_v50 <https://mmcif.wwpdb.org/dictionaries/mmcif_pd * pdb_ins_code -* `_entity_poly_seq <https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/pdbx_reference_entity_poly_seq.html>`_ - - * entity_id - * mon_id - * num - - * `_chem_comp <https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/chem_comp.html>`_ * id -- GitLab