From e78ac11b0d160a09db9745f069cefdf1e966dcb3 Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Mon, 29 Apr 2024 10:30:19 +0200
Subject: [PATCH] Documentation update
---
modules/io/tests/test_mmcif_writer.cc | 2 +-
modules/seq/alg/doc/seqalg.rst | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/modules/io/tests/test_mmcif_writer.cc b/modules/io/tests/test_mmcif_writer.cc
index 6ac8587c6..2f6f6745b 100644
--- a/modules/io/tests/test_mmcif_writer.cc
+++ b/modules/io/tests/test_mmcif_writer.cc
@@ -372,7 +372,7 @@ BOOST_AUTO_TEST_CASE(mmcif_writer_small_sugars)
writer.Write("test", out);
String s=out.str();
- // Check that the mmCIF output contains 2 non-polymer entities
+ // Check that the mmCIF output contains a branched entity
BOOST_CHECK_NE(s.find("loop_\n_entity.id\n_entity.type\n1 branched"),
String::npos);
// Check that atoms are HETATMs since non-poly
diff --git a/modules/seq/alg/doc/seqalg.rst b/modules/seq/alg/doc/seqalg.rst
index a092012d9..75593e9f2 100644
--- a/modules/seq/alg/doc/seqalg.rst
+++ b/modules/seq/alg/doc/seqalg.rst
@@ -226,7 +226,7 @@ Algorithms for Alignments
calculated as the number of matches divided by the length of the longer
sequence. If set to `seq.alg.RefMode.ALIGNMENT` (the default), the sequence
identity is calculated as the number of matches divided by the number of
- aligned residues.
+ aligned residues (not including the gaps).
:type ref_mode: int
:param seq_a: the index of the first sequence
:type seq_a: int
--
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