diff --git a/examples/code_fragments/harmony/glwin.py b/examples/code_fragments/harmony/glwin.py
deleted file mode 100644
index 8e0549cecff82838bf418055fcf6f5792b022dfc..0000000000000000000000000000000000000000
--- a/examples/code_fragments/harmony/glwin.py
+++ /dev/null
@@ -1,91 +0,0 @@
-import math
-from ost import gfx, geom, mol
-from PyQt4.QtGui import *
-from PyQt4.QtCore import *
-from PyQt4.QtOpenGL import *
-
-TRANS_VAL = 20
-
-class DokkGLCanvas(QGLWidget):
-
- def __init__(self, format, parent=None):
- QGLWidget.__init__(self, format, parent)
- self.last_pos_=QPoint()
- self.setAutoFillBackground(False)
- #self.setAttribute(Qt.WA_KeyCompression,True)
- self.resize(800, 800)
- self.atom=mol.AtomHandle()
- def initializeGL(self):
- gfx.Scene().InitGL()
- self.startTimer(10)
- def paintGL(self):
- gfx.Scene().RenderGL()
- def paintEvent(self, event):
- self.makeCurrent()
- self.paintGL()
- #painter=QPainter(self)
- #self.RenderHUD(painter)
- self.swapBuffers()
-
- def RenderHUD(self, painter):
- painter.setPen(QColor(100, 100, 100, 50))
- painter.setBrush(QColor(200, 200, 200, 50))
- painter.drawRect(QRect(QPoint(0, 0), QSize(self.width(), 25)))
- painter.setPen(QPen(QColor(255,255,255), Qt.SolidLine))
- painter.setFont(QFont("Verdana"))
- def resizeGL(self, w, h):
- gfx.Scene().Resize(w, h)
-
- def mousePressEvent(self, event):
- self.last_point_=QPoint(event.x(), event.y())
- v1=gfx.Scene().UnProject(geom.Vec3(event.x(), self.height()-event.y(), 0.0));
- v2=gfx.Scene().UnProject(geom.Vec3(event.x(), self.height()-event.y(), 1.0));
- self.atom=self.world.go.PickAtom(geom.Line3(v1, v2), 0.1)
- self.world.go.SetColor(gfx.WHITE, '')
- if self.atom.IsValid():
- self.world.go.SetColorForAtom(gfx.RED, self.atom)
- def mouseReleaseEvent(self, event):
- self.world.go.SetColor(gfx.WHITE, '')
- self.atom=mol.AtomHandle()
- def mouseMoveEvent(self, event):
- delta=QPoint(event.x(), event.y())-self.last_point_
- self.last_point_=QPoint(event.x(), event.y())
- if event.buttons() & Qt.LeftButton:
- if self.atom.IsValid():
- rot=gfx.Scene().GetTransform().GetRot()
- force=-rot.GetRow(1)*delta.y()+rot.GetRow(0)*delta.x()
- self.world.AddForce(self.atom, force*2)
- def wheelEvent(self, event):
- self.OnTransform(gfx.INPUT_COMMAND_TRANSZ,0,gfx.TRANSFORM_VIEW,
- 0.1*(-event.delta()))
-
- def timerEvent(self, event):
- self.world.Update()
- self.update()
- def OnTransform(self,com, indx, trg, val):
- gfx.Scene().Apply(gfx.InputEvent(gfx.INPUT_DEVICE_MOUSE,
- com, indx,trg,val*0.5),False)
-
- def keyReleaseEvent(self, event):
- if event.key() == Qt.Key_Escape:
- QApplication.exit()
-
-class DokkGLWin(gfx.GLWinBase):
- def _CreateFormat(self):
- fmt=QGLFormat()
- fmt.setAlpha(True)
- return fmt
- def __init__(self):
- gfx.GLWinBase.__init__(self)
- self.canvas_=DokkGLCanvas(self._CreateFormat())
- def DoRefresh(self):
- self.refresh_=True
- def SetLevel(self, level):
- self.canvas_.SetLevel(level)
- def Show(self, fullscreen):
- if fullscreen:
- self.canvas_.showFullScreen()
- else:
- self.canvas_.show()
- def SetStereo():
- pass
diff --git a/examples/code_fragments/harmony/harmony b/examples/code_fragments/harmony/harmony
deleted file mode 100755
index c315b3f085f5fd3e0ad977c5618d8fffec8fd2cc..0000000000000000000000000000000000000000
--- a/examples/code_fragments/harmony/harmony
+++ /dev/null
@@ -1,2 +0,0 @@
-#!/bin/sh
-dng -s harmony.py
diff --git a/examples/code_fragments/harmony/harmony.py b/examples/code_fragments/harmony/harmony.py
deleted file mode 100644
index d9f98316d49d295e71f5d8f488b8b7052df5e392..0000000000000000000000000000000000000000
--- a/examples/code_fragments/harmony/harmony.py
+++ /dev/null
@@ -1,65 +0,0 @@
-import glwin
-from ost import io, geom, gfx, mol
-
-class World:
- def __init__(self):
- self.atom_string=mol.CreateEntity()
- edi=self.atom_string.EditXCS(mol.EditMode.BUFFERED_EDIT)
- chain=edi.InsertChain("A")
- r=edi.AppendResidue(chain, "STRING")
- prev_atom=mol.AtomHandle()
- for i in range(-5, 5):
- atom=edi.InsertAtom(r, "X%02d" % (i+5), geom.Vec3(i, 0, 0))
- if prev_atom.IsValid():
- edi.Connect(prev_atom, atom)
- prev_atom=atom
- self.go=gfx.Entity("GO", gfx.CUSTOM, self.atom_string)
- self.go.custom_options.SetBondRad(0.1)
- self.go.custom_options.SetSphereRad(0.4)
- scene.Add(self.go)
- scene.CenterOn(self.go)
- self.last_positions=[]
- for atom in self.atom_string.atoms:
- self.last_positions.append(atom.pos)
- self.forces=[]
- for i in range(len(self.last_positions)):
- self.forces.append(geom.Vec3())
- def AddForce(self, atom, force):
- for index, aa in enumerate(self.atom_string.atoms):
- if aa==atom:
- self.forces[index]+=force
- break
- def Update(self):
- last_atom=mol.AtomHandle()
- atoms=self.atom_string.atoms
- for index, atom in enumerate(atoms):
- if last_atom.IsValid():
- diff=last_atom.pos-atom.pos
- length=geom.Length(diff)
- diff/=length
- force=(length-1)**2*diff*100
- if length<1.0:
- force*=-1
- self.forces[index-1]-=force
- self.forces[index]+=force
- last_atom=atom
- for i in range(len(atoms)):
- for j in range(i+2, len(atoms)):
- diff=atoms[i].pos-atoms[j].pos
- length=geom.Length(diff)
- diff/=length
- force=((1.0/length)**12-(1.0/length)**6)*diff
- self.forces[i]+=force
- self.forces[j]-=force
- edi=self.atom_string.EditXCS(mol.EditMode.BUFFERED_EDIT)
- for force, atom in zip(self.forces, self.atom_string.atoms):
- edi.SetAtomPos(atom, atom.pos+force*0.004)
- self.go.Rebuild()
- for i in range(len(self.last_positions)):
- self.forces[i]=geom.Vec3()
-
-dokk_win=glwin.DokkGLWin()
-
-world=World()
-dokk_win.canvas_.world=world
-dokk_win.Show(fullscreen=('--fullscreen' in sys.argv))
diff --git a/examples/code_fragments/mm/ethanol_example.py b/examples/code_fragments/mm/ethanol_example.py
index 1f8988d384b37763a1a97099959a604b0da2df1c..398be2be8be5c5f74d4785cacbb4d54495aa8d41 100644
--- a/examples/code_fragments/mm/ethanol_example.py
+++ b/examples/code_fragments/mm/ethanol_example.py
@@ -1,5 +1,5 @@
from ost.mol.mm import *
-from PyQt4 import QtCore
+from PyQt5 import QtCore
"""
MM - Demo
@@ -17,8 +17,7 @@ class Anim(QtCore.QTimer):
self.sim=sim
self.go = go
self.ed = ent.EditXCS()
- QtCore.QObject.connect(self, QtCore.SIGNAL("timeout()"), self.OnTimer)
-
+ self.timeout.connect(self.OnTimer)
def OnTimer(self):
self.sim.Steps(1)
diff --git a/examples/code_fragments/mm/ethanol_example_using_topology.py b/examples/code_fragments/mm/ethanol_example_using_topology.py
index 5587a07f988d3d9c9f7fe957b500b8b1eab22154..553ef88609ea77c1e172c60b6e064078d07885c9 100644
--- a/examples/code_fragments/mm/ethanol_example_using_topology.py
+++ b/examples/code_fragments/mm/ethanol_example_using_topology.py
@@ -1,5 +1,5 @@
from ost.mol.mm import *
-from PyQt4 import QtCore
+from PyQt5 import QtCore
from math import sqrt
from math import sin
@@ -28,7 +28,7 @@ class Anim(QtCore.QTimer):
self.force_constant = param[3]
self.steps = 0
self.counter = 0
- QtCore.QObject.connect(self, QtCore.SIGNAL("timeout()"), self.OnTimer)
+ self.timeout.connect(self.OnTimer)
def OnTimer(self):
if self.steps % 20 == 0:
diff --git a/examples/code_fragments/mm/gb_example.py b/examples/code_fragments/mm/gb_example.py
index 99a55343c6d4b0873ac0b71922eebf41fb9ae491..6859e29c7ccf6153f8599decce4cc8c3af642a14 100644
--- a/examples/code_fragments/mm/gb_example.py
+++ b/examples/code_fragments/mm/gb_example.py
@@ -1,5 +1,5 @@
from ost.mol import mm
-from PyQt4 import QtCore
+from PyQt5 import QtCore
"""
MM - Demo
@@ -17,7 +17,7 @@ class Anim(QtCore.QTimer):
self.sim=sim
self.go = go
self.ed = ent.EditXCS(ost.mol.BUFFERED_EDIT)
- QtCore.QObject.connect(self, QtCore.SIGNAL("timeout()"), self.OnTimer)
+ self.timeout.connect(self.OnTimer)
def OnTimer(self):
diff --git a/examples/code_fragments/trj/test_trj.py b/examples/code_fragments/trj/test_trj.py
index a1625996c109ed4272a2d8439219b9e7d583db61..5cee12d026633ca61a6b6b119167b0035cae6a1b 100644
--- a/examples/code_fragments/trj/test_trj.py
+++ b/examples/code_fragments/trj/test_trj.py
@@ -1,5 +1,5 @@
# trajectory generated by Raimund Dutzler
-from PyQt4 import QtCore
+from PyQt5 import QtCore
class Anim(QtCore.QTimer):
def __init__(self,cg,go):
@@ -7,8 +7,7 @@ class Anim(QtCore.QTimer):
self.cg_=cg
self.go_=go
self.frame_=0
- QtCore.QObject.connect(self, QtCore.SIGNAL("timeout()"), self.OnTimer)
-
+ self.timeout.connect(self.OnTimer)
def OnTimer(self):
self.frame_=(self.frame_+1)%self.cg_.GetFrameCount()
diff --git a/examples/code_fragments/ui/board.py b/examples/code_fragments/ui/board.py
index 4a45ce1d31606a07f81783fb217c9beb4ecf243e..6717d72911f1c3fba5490fc5dfb2738324157e4b 100644
--- a/examples/code_fragments/ui/board.py
+++ b/examples/code_fragments/ui/board.py
@@ -4,15 +4,16 @@
import sys
import random
-from PyQt4 import QtCore, QtGui
+from PyQt5 import QtCore, QtGui, QtWidgets
-class Board(QtGui.QFrame):
+class Board(QtWidgets.QFrame):
BoardWidth = 10
BoardHeight = 22
Speed = 300
+ messageToStatusBar = QtCore.pyqtSignal(str)
def __init__(self, parent=None):
- QtGui.QFrame.__init__(self, parent)
+ QtWidgets.QFrame.__init__(self, parent)
self.resize(180, 380)
self.setMinimumHeight(380)
self.setMinimumWidth(180)
@@ -32,6 +33,7 @@ class Board(QtGui.QFrame):
self.nextPiece.setRandomShape()
+
def shapeAt(self, x, y):
return self.board[(y * Board.BoardWidth) + x]
@@ -52,9 +54,8 @@ class Board(QtGui.QFrame):
self.isWaitingAfterLine = False
self.numLinesRemoved = 0
self.clearBoard()
-
- self.emit(QtCore.SIGNAL("messageToStatusbar(QString)"),
- str(self.numLinesRemoved))
+
+ self.messageToStatusBar.emit(str(self.numLinesRemoved))
self.newPiece()
self.timer.start(Board.Speed, self)
@@ -66,12 +67,10 @@ class Board(QtGui.QFrame):
self.isPaused = not self.isPaused
if self.isPaused:
self.timer.stop()
- self.emit(QtCore.SIGNAL("messageToStatusbar(QString)"), "paused")
+ self.messageToStatusBar.emit("paused")
else:
self.timer.start(Board.Speed, self)
- self.emit(QtCore.SIGNAL("messageToStatusbar(QString)"),
- str(self.numLinesRemoved))
-
+ self.messageToStatusBar.emit(str(self.numLinesRemoved))
self.update()
def paintEvent(self, event):
@@ -98,7 +97,7 @@ class Board(QtGui.QFrame):
def keyPressEvent(self, event):
if not self.isStarted or self.curPiece.shape() == Tetrominoes.NoShape:
- QtGui.QWidget.keyPressEvent(self, event)
+ QtWidgets.QWidget.keyPressEvent(self, event)
return
key = event.key()
@@ -120,7 +119,7 @@ class Board(QtGui.QFrame):
elif key == QtCore.Qt.Key_D:
self.oneLineDown()
else:
- QtGui.QWidget.keyPressEvent(self, event)
+ QtWidgets.QWidget.keyPressEvent(self, event)
def timerEvent(self, event):
if event.timerId() == self.timer.timerId():
@@ -185,8 +184,7 @@ class Board(QtGui.QFrame):
if numFullLines > 0:
self.numLinesRemoved = self.numLinesRemoved + numFullLines
- self.emit(QtCore.SIGNAL("messageToStatusbar(QString)"),
- str(self.numLinesRemoved))
+ self.messageToStatusBar.emit(str(self.LinesRemoved))
self.isWaitingAfterLine = True
self.curPiece.setShape(Tetrominoes.NoShape)
self.update()
@@ -201,9 +199,7 @@ class Board(QtGui.QFrame):
self.curPiece.setShape(Tetrominoes.NoShape)
self.timer.stop()
self.isStarted = False
- self.emit(QtCore.SIGNAL("messageToStatusbar(QString)"), "Game over")
-
-
+ self.messageToStatusBar.emit("Game over")
def tryMove(self, newPiece, newX, newY):
for i in range(4):
@@ -228,11 +224,11 @@ class Board(QtGui.QFrame):
painter.fillRect(x + 1, y + 1, self.squareWidth() - 2,
self.squareHeight() - 2, color)
- painter.setPen(color.light())
+ painter.setPen(color.lighter())
painter.drawLine(x, y + self.squareHeight() - 1, x, y)
painter.drawLine(x, y, x + self.squareWidth() - 1, y)
- painter.setPen(color.dark())
+ painter.setPen(color.darker())
painter.drawLine(x + 1, y + self.squareHeight() - 1,
x + self.squareWidth() - 1, y + self.squareHeight() - 1)
painter.drawLine(x + self.squareWidth() - 1,
diff --git a/examples/code_fragments/ui/mdi_example.py b/examples/code_fragments/ui/mdi_example.py
index ba8b14d8c1ce63b169b0a040bf817ee250bab74a..d6cd2abe2ebe3a9ad3498cd35e0f1bf650c89efe 100644
--- a/examples/code_fragments/ui/mdi_example.py
+++ b/examples/code_fragments/ui/mdi_example.py
@@ -16,14 +16,14 @@
# along with this library; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
#------------------------------------------------------------------------------
-from PyQt4 import QtCore, QtGui
+from PyQt5 import QtGui, QtCore, QtWidgets
from ost import gui
import sys, random
-class Points(QtGui.QWidget):
+class Points(QtWidgets.QWidget):
def __init__(self, parent=None):
- QtGui.QWidget.__init__(self, parent)
+ QtWidgets.QWidget.__init__(self, parent)
self.setWindowTitle('Some Points')
def paintEvent(self, event):
diff --git a/examples/code_fragments/ui/menubar_example.py b/examples/code_fragments/ui/menubar_example.py
index fc953b7ad497f1ce027f0f10c58d2ce37a2293df..52000903c445c972388c30bc11922e0304bb670a 100644
--- a/examples/code_fragments/ui/menubar_example.py
+++ b/examples/code_fragments/ui/menubar_example.py
@@ -19,24 +19,23 @@
from ost import gui
from ost.gui import FileLoader
-from PyQt4 import QtCore, QtGui
+from PyQt5 import QtCore, QtGui, QtWidgets
class InitMenuBar(QtCore.QObject):
def __init__(self, menu_bar=None):
QtCore.QObject.__init__(self, menu_bar)
self.scene_selection_ = gui.SceneSelection.Instance()
- test_action = QtGui.QAction('Test Menu Point', self)
+ test_action = QtWidgets.QAction('Test Menu Point', self)
test_action.setStatusTip('Print Hello World')
test_action.setShortcut('Ctrl+T')
-
- self.connect(test_action, QtCore.SIGNAL('triggered()'), self.TestMethod)
+ test_action.triggered.connect(self.TestMethod)
test = menu_bar.addMenu('&Test')
test.addAction(test_action)
def TestMethod(self):
- reply = QtGui.QMessageBox()
+ reply = QtWidgets.QMessageBox()
node_count = self.scene_selection_.GetActiveNodeCount()
if(node_count > 0):
@@ -47,7 +46,7 @@ class InitMenuBar(QtCore.QObject):
reply.setText("Oh, there are selected entities: %s" % string)
else:
reply.setText("This is a test!")
- reply.addButton(QtGui.QMessageBox.Yes)
+ reply.addButton(QtWidgets.QMessageBox.Yes)
reply.exec_()
menu_bar=gui.GostyApp.Instance().perspective.GetMenuBar()
diff --git a/examples/code_fragments/ui/widget_example.py b/examples/code_fragments/ui/widget_example.py
index 80aee7d5e6bbcf30d666ce30e9d258850318dc71..1c996c2535bc4d5a7495feff42ec370e02afe2c2 100644
--- a/examples/code_fragments/ui/widget_example.py
+++ b/examples/code_fragments/ui/widget_example.py
@@ -19,7 +19,7 @@
from ost import gui
-from PyQt4 import QtCore, QtGui
+from PyQt5 import QtCore, QtGui
from board import Board
#Get Panels (Class which manages widgets)
diff --git a/examples/demos/charmm_trj_blur.py b/examples/demos/charmm_trj_blur.py
index 8edfdc0c2768007b83698acf22cd8f2caa012da7..f65d0dbccb9f7fb51c4329b5668ec35fd66be378 100644
--- a/examples/demos/charmm_trj_blur.py
+++ b/examples/demos/charmm_trj_blur.py
@@ -1,5 +1,5 @@
# trajectory generated by Raimund Dutzler
-from PyQt4 import QtCore
+from PyQt5 import QtCore
scene.RemoveAll()
@@ -14,7 +14,7 @@ class Anim(QtCore.QTimer):
self.cg_=cg
self.go_=go
self.frame_=0
- QtCore.QObject.connect(self, QtCore.SIGNAL("timeout()"), self.OnTimer)
+ self.timeout.connect(self.OnTimer)
def OnTimer(self):
self.frame_=(self.frame_+1)%self.cg_.GetFrameCount()
diff --git a/examples/demos/the_hammer.py b/examples/demos/the_hammer.py
index 4f6266d287430788fa99d3b56647bba48c9d9588..1c308b2d7ae8ad20d3b0413d783e07b2db3dfd43 100644
--- a/examples/demos/the_hammer.py
+++ b/examples/demos/the_hammer.py
@@ -1,4 +1,4 @@
-from PyQt4 import QtCore
+from PyQt5 import QtCore
import math
# remove all objects from scene, just in case
scene.RemoveAll()
@@ -11,8 +11,7 @@ class Anim(QtCore.QTimer):
self.angle=0.0
self.dir=0.01
self.edi=self.a.view.handle.EditXCS(mol.UNBUFFERED_EDIT)
- QtCore.QObject.connect(self, QtCore.SIGNAL("timeout()"), self.OnTimer)
-
+ self.timeout.connect(self.OnTimer)
def OnTimer(self):
self.angle+=self.dir