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   <h1>Python Module Index</h1>

   <div class="modindex-jumpbox">
   <a href="#cap-c"><strong>c</strong></a> | 
   <a href="#cap-g"><strong>g</strong></a> | 
   <a href="#cap-i"><strong>i</strong></a> | 
   <a href="#cap-m"><strong>m</strong></a> | 
   <a href="#cap-s"><strong>s</strong></a>
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     <tr class="pcap"><td></td><td>&nbsp;</td><td></td></tr>
     <tr class="cap"><td></td><td><a name="cap-c">
           <strong>c</strong></a></td><td></td></tr>
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       <td></td>
       <td>
       <a href="conop/conop.html#module-ost.conop"><tt class="xref">ost.conop</tt></a></td><td>
       <em>The conop modules implement different strategies to derive
connectivity information of molecules.</em></td></tr>
     <tr class="pcap"><td></td><td>&nbsp;</td><td></td></tr>
     <tr class="cap"><td></td><td><a name="cap-g">
           <strong>g</strong></a></td><td></td></tr>
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       <td></td>
       <td>
       <a href="geom/geom.html#module-ost.geom"><tt class="xref">ost.geom</tt></a></td><td>
       <em>Functions and classes for vectors, matrices and geometrical
objects in 2, 3 and four dimensions</em></td></tr>
     <tr class="pcap"><td></td><td>&nbsp;</td><td></td></tr>
     <tr class="cap"><td></td><td><a name="cap-i">
           <strong>i</strong></a></td><td></td></tr>
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       <td>
       <a href="img/base/img.html#module-ost.img"><tt class="xref">ost.img</tt></a></td><td>
       <em>Images and density maps</em></td></tr>
     <tr class="cg-1">
       <td></td>
       <td>&nbsp;&nbsp;&nbsp;
       <a href="img/alg/alg.html#module-ost.img.alg"><tt class="xref">ost.img.alg</tt></a></td><td>
       <em>Image processing algorithms</em></td></tr>
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       <td></td>
       <td>
       <a href="io/io.html#module-ost.io"><tt class="xref">ost.io</tt></a></td><td>
       <em>Input and output of sequences, structures and density maps</em></td></tr>
     <tr class="pcap"><td></td><td>&nbsp;</td><td></td></tr>
     <tr class="cap"><td></td><td><a name="cap-m">
           <strong>m</strong></a></td><td></td></tr>
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       <td></td>
       <td>
       <a href="mol/base/mol.html#module-ost.mol"><tt class="xref">ost.mol</tt></a></td><td>
       <em>Contains classes and functions to deal with molecular structures
and surfaces</em></td></tr>
     <tr class="pcap"><td></td><td>&nbsp;</td><td></td></tr>
     <tr class="cap"><td></td><td><a name="cap-s">
           <strong>s</strong></a></td><td></td></tr>
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       <td></td>
       <td>
       <a href="seq/base/seq.html#module-ost.seq"><tt class="xref">ost.seq</tt></a></td><td>
       <em>Contains classes and functions to deal with sequences and
alignments</em></td></tr>
     <tr>
       <td></td>
       <td>
       <a href="base/base.html#module-ost.settings"><tt class="xref">ost.settings</tt></a></td><td>
       <em>Helper Functions to Locate Files and Retrieve Preferences</em></td></tr>
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