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Gabriel Studer authored
After an initial superposition, subsets get built using a distance
threshold. These subsets get superposed iteratively until a maximum
number of iterations is reached or the transformation matrix
between two superposition steps converges to the identity matrix.
This procedure usually converges to the largest group of superposable
atoms and is usefull for flexible domains. An example is the
superposition of 1AKE and 4AKE.
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===============OPENSTRUCTURE molecular modelling framework ===============


OpenStructure is the next generation molecular modelling tailored at anybody
 using 3D Structures or electron density maps.

Please refer to www.openstructure.org for more information or try out
 directly one of the binary packages available for download.

Thank you for you interest and enjoy the straightforward way of handling 
protein structure data!

Please do not hesitate to contact us for feedback or troubleshooting:

ost-users@maillist.unibas.ch 


=============== The OpenStructure Team ===================================