README.md 912 Bytes
Newer Older
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
Scripts and data to reproduce various plots / table from the Supporting 
information

1. S1 Fig: Length of modelled loops
2. S1 Table: Structural coverage in default StructureDB


S1 Fig: Length of modelled loops
--------------------------------

- fetch the stdout of running  build_promod_models.py in the modelling
  benchmark by executing 
  `pm build_promod_models.py > promod3_modelling_out.txt`
- copy promod3_modelling_out.txt in the same directory as 
  cameo_benchmark_loop_lengths.py
- execute `pm cameo_benchmark_loop_length.py` which creates 
  cameo_benchmark_loop_lengths.png and spits out some numbers

S1 Table: Structural coverage in default StructureDB
----------------------------------------------------

- execute `pm structural_coverage_in_StructureDB.py` to get the values that are 
  displayed in S1 Table. Be aware: the table reports the average values over 3 
  runs of this script.