From b9d8e1c612ef535bcb2e1788c78aef95299e4c1a Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Mon, 16 Nov 2020 11:46:30 +0100
Subject: [PATCH] documentation for ProModII evaluation

---
 modelling/README.md | 15 ++++++++++++++-
 1 file changed, 14 insertions(+), 1 deletion(-)

diff --git a/modelling/README.md b/modelling/README.md
index 8929895..3bb7b0d 100644
--- a/modelling/README.md
+++ b/modelling/README.md
@@ -39,6 +39,17 @@ Modelling with ProMod3 and MODELLER
   modeller_models directory:
   `python build_modeller_models.py`
 
+Modelling with ProModII
+-----------------------
+
+- ProModII is considered legacy software and only available on our internal 
+  systems. We provide the resulting models in this repository for further 
+  processing. Only 169 modelling runs successfully produced a result.
+  After setting up the environment (loading ProModII/3.70 and 
+  ProMod3/3.1.1-foss-2018b-Python-3.6.6-OST-2.1.0 modules), the models have 
+  been built by calling:
+  `pm build_promodII_models.py`
+
 
 Evaluation
 ----------
@@ -60,4 +71,6 @@ Evaluation
   `python score_models.py`
 - Plots and some key values based on the score json files are generated with:
   `python do_plots.py`
-
+- For the additional evaluation with ProModII execute:
+  `python do_plots_promodII`
+ 
-- 
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