From be9bff9fd52376038b298d40d5fa0fe4ade14d69 Mon Sep 17 00:00:00 2001
From: Erblin Asllanaj <erblin.asllanaj@unibas.ch>
Date: Tue, 5 Jul 2022 11:56:22 +0200
Subject: [PATCH] normalize solvent accessibility correctly
---
pipelines/tbvar3d/tbvar3d_pipeline.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/pipelines/tbvar3d/tbvar3d_pipeline.py b/pipelines/tbvar3d/tbvar3d_pipeline.py
index e3cee69..fa0d3da 100755
--- a/pipelines/tbvar3d/tbvar3d_pipeline.py
+++ b/pipelines/tbvar3d/tbvar3d_pipeline.py
@@ -761,7 +761,7 @@ def _annotate(anno_json, data, mongo_db, progress_file, uniref90, nr):
# compute it for all
if progress_file:
_UpdateProgress(progress_file, "Compute Accessibility values")
- accessibility_annotator = _AccessibilityStructAnno()
+ accessibility_annotator = _AccessibilityStructAnno(normalize=True)
accessibility_pipeline = pipeline.AnnotationPipeline(
struct_anno=[accessibility_annotator]
)
--
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