diff --git a/test/config_quantify.yaml b/test/config_quantify.yaml deleted file mode 100644 index 691cedff5fc2ca15c48f6b965b2eefed0af039f2..0000000000000000000000000000000000000000 --- a/test/config_quantify.yaml +++ /dev/null @@ -1,23 +0,0 @@ ---- -#### GLOBAL PARAMETERS #### - -# Directories -# Usually there is no need to change these -output_dir: "results" -scripts_dir: "../scripts" -local_log: "logs/local" -cluster_log: "logs/cluster" - -# Types of miRNAs to quantify -#mir_list: ["miRNA", "miRNA_primary_transcript", "isomirs"] -mir_list: ["miRNA", "miRNA_primary_transcript"] - -# Resources: miR annotations, chromosome name mappings -# All of these are produced by the "prepare" workflow -mirnas_anno: "results/homo_sapiens/chrY/mirna_filtered.bed" -isomirs_anno: "results/homo_sapiens/chrY/isomirs_annotation.bed" - -# Inputs information -input_dir: "results" -sample: ["test_lib"] # put all samples, separated by comma -...