From 51af3550134b0151b0c22726747d4979bb7e72e6 Mon Sep 17 00:00:00 2001
From: Iris Mestres <iris.mestrespascual@unibas.ch>
Date: Sat, 4 Mar 2023 19:39:25 +0100
Subject: [PATCH] chore: remove deprecated DAG

---
 images/workflow_dag_prepare.svg | 621 --------------------------------
 1 file changed, 621 deletions(-)
 delete mode 100644 images/workflow_dag_prepare.svg

diff --git a/images/workflow_dag_prepare.svg b/images/workflow_dag_prepare.svg
deleted file mode 100644
index 9ef1678..0000000
--- a/images/workflow_dag_prepare.svg
+++ /dev/null
@@ -1,621 +0,0 @@
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-<!-- 14&#45;&gt;12 -->
-<g id="edge18" class="edge">
-<title>14&#45;&gt;12</title>
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-<!-- 15 -->
-<g id="node16" class="node">
-<title>15</title>
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-<text text-anchor="middle" x="716.5" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_final</text>
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-<!-- 15&#45;&gt;0 -->
-<g id="edge6" class="edge">
-<title>15&#45;&gt;0</title>
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-<!-- 16 -->
-<g id="node17" class="node">
-<title>16</title>
-<path fill="none" stroke="#d86e56" stroke-width="2" stroke-dasharray="5,2" d="M939.5,-180C939.5,-180 865.5,-180 865.5,-180 859.5,-180 853.5,-174 853.5,-168 853.5,-168 853.5,-156 853.5,-156 853.5,-150 859.5,-144 865.5,-144 865.5,-144 939.5,-144 939.5,-144 945.5,-144 951.5,-150 951.5,-156 951.5,-156 951.5,-168 951.5,-168 951.5,-174 945.5,-180 939.5,-180"/>
-<text text-anchor="middle" x="902.5" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_concat</text>
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-<!-- 16&#45;&gt;15 -->
-<g id="edge21" class="edge">
-<title>16&#45;&gt;15</title>
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-<!-- 17 -->
-<g id="node18" class="node">
-<title>17</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M1245,-252C1245,-252 1166,-252 1166,-252 1160,-252 1154,-246 1154,-240 1154,-240 1154,-228 1154,-228 1154,-222 1160,-216 1166,-216 1166,-216 1245,-216 1245,-216 1251,-216 1257,-222 1257,-228 1257,-228 1257,-240 1257,-240 1257,-246 1251,-252 1245,-252"/>
-<text text-anchor="middle" x="1205.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_rename</text>
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-<!-- 17&#45;&gt;16 -->
-<g id="edge22" class="edge">
-<title>17&#45;&gt;16</title>
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-</g>
-<!-- 18 -->
-<g id="node19" class="node">
-<title>18</title>
-<path fill="none" stroke="#d88556" stroke-width="2" stroke-dasharray="5,2" d="M1097.5,-329C1097.5,-329 1059.5,-329 1059.5,-329 1053.5,-329 1047.5,-323 1047.5,-317 1047.5,-317 1047.5,-300 1047.5,-300 1047.5,-294 1053.5,-288 1059.5,-288 1059.5,-288 1097.5,-288 1097.5,-288 1103.5,-288 1109.5,-294 1109.5,-300 1109.5,-300 1109.5,-317 1109.5,-317 1109.5,-323 1103.5,-329 1097.5,-329"/>
-<text text-anchor="middle" x="1078.5" y="-317" font-family="sans" font-size="10.00" fill="#000000">iso_anno</text>
-<text text-anchor="middle" x="1078.5" y="-306" font-family="sans" font-size="10.00" fill="#000000">bp_3p: &#45;1</text>
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-<!-- 18&#45;&gt;17 -->
-<g id="edge31" class="edge">
-<title>18&#45;&gt;17</title>
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-<!-- 19&#45;&gt;18 -->
-<g id="edge32" class="edge">
-<title>19&#45;&gt;18</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M876.0691,-367.5085C879.256,-366.6447 882.4177,-365.8025 885.5,-365 950.0665,-348.1901 971.0565,-352.6418 1037.6698,-328.8971"/>
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-<!-- 23 -->
-<g id="node24" class="node">
-<title>23</title>
-<path fill="none" stroke="#d88556" stroke-width="2" stroke-dasharray="5,2" d="M1177.5,-329C1177.5,-329 1139.5,-329 1139.5,-329 1133.5,-329 1127.5,-323 1127.5,-317 1127.5,-317 1127.5,-300 1127.5,-300 1127.5,-294 1133.5,-288 1139.5,-288 1139.5,-288 1177.5,-288 1177.5,-288 1183.5,-288 1189.5,-294 1189.5,-300 1189.5,-300 1189.5,-317 1189.5,-317 1189.5,-323 1183.5,-329 1177.5,-329"/>
-<text text-anchor="middle" x="1158.5" y="-317" font-family="sans" font-size="10.00" fill="#000000">iso_anno</text>
-<text text-anchor="middle" x="1158.5" y="-306" font-family="sans" font-size="10.00" fill="#000000">bp_3p: &#45;1</text>
-<text text-anchor="middle" x="1158.5" y="-295" font-family="sans" font-size="10.00" fill="#000000">bp_5p: 0</text>
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-<!-- 19&#45;&gt;23 -->
-<g id="edge38" class="edge">
-<title>19&#45;&gt;23</title>
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-<!-- 25 -->
-<g id="node26" class="node">
-<title>25</title>
-<path fill="none" stroke="#d88556" stroke-width="2" stroke-dasharray="5,2" d="M1257.5,-329C1257.5,-329 1219.5,-329 1219.5,-329 1213.5,-329 1207.5,-323 1207.5,-317 1207.5,-317 1207.5,-300 1207.5,-300 1207.5,-294 1213.5,-288 1219.5,-288 1219.5,-288 1257.5,-288 1257.5,-288 1263.5,-288 1269.5,-294 1269.5,-300 1269.5,-300 1269.5,-317 1269.5,-317 1269.5,-323 1263.5,-329 1257.5,-329"/>
-<text text-anchor="middle" x="1238.5" y="-317" font-family="sans" font-size="10.00" fill="#000000">iso_anno</text>
-<text text-anchor="middle" x="1238.5" y="-306" font-family="sans" font-size="10.00" fill="#000000">bp_3p: &#45;1</text>
-<text text-anchor="middle" x="1238.5" y="-295" font-family="sans" font-size="10.00" fill="#000000">bp_5p: 1</text>
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-<title>19&#45;&gt;25</title>
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-<!-- 27 -->
-<g id="node28" class="node">
-<title>27</title>
-<path fill="none" stroke="#d88556" stroke-width="2" stroke-dasharray="5,2" d="M625.5,-329C625.5,-329 587.5,-329 587.5,-329 581.5,-329 575.5,-323 575.5,-317 575.5,-317 575.5,-300 575.5,-300 575.5,-294 581.5,-288 587.5,-288 587.5,-288 625.5,-288 625.5,-288 631.5,-288 637.5,-294 637.5,-300 637.5,-300 637.5,-317 637.5,-317 637.5,-323 631.5,-329 625.5,-329"/>
-<text text-anchor="middle" x="606.5" y="-317" font-family="sans" font-size="10.00" fill="#000000">iso_anno</text>
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-<g id="edge44" class="edge">
-<title>19&#45;&gt;27</title>
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-<g id="node30" class="node">
-<title>29</title>
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-<title>19&#45;&gt;29</title>
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-<g id="node32" class="node">
-<title>31</title>
-<path fill="none" stroke="#d88556" stroke-width="2" stroke-dasharray="5,2" d="M781.5,-329C781.5,-329 745.5,-329 745.5,-329 739.5,-329 733.5,-323 733.5,-317 733.5,-317 733.5,-300 733.5,-300 733.5,-294 739.5,-288 745.5,-288 745.5,-288 781.5,-288 781.5,-288 787.5,-288 793.5,-294 793.5,-300 793.5,-300 793.5,-317 793.5,-317 793.5,-323 787.5,-329 781.5,-329"/>
-<text text-anchor="middle" x="763.5" y="-317" font-family="sans" font-size="10.00" fill="#000000">iso_anno</text>
-<text text-anchor="middle" x="763.5" y="-306" font-family="sans" font-size="10.00" fill="#000000">bp_3p: 0</text>
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-<title>19&#45;&gt;31</title>
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-<g id="node34" class="node">
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-<title>19&#45;&gt;33</title>
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-<g id="node36" class="node">
-<title>35</title>
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-<title>19&#45;&gt;35</title>
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-<title>19&#45;&gt;37</title>
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-<g id="edge33" class="edge">
-<title>20&#45;&gt;18</title>
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-<title>20&#45;&gt;23</title>
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-<title>20&#45;&gt;25</title>
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-<title>20&#45;&gt;27</title>
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-<title>20&#45;&gt;29</title>
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-<title>20&#45;&gt;31</title>
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-<!-- 20&#45;&gt;33 -->
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-<title>20&#45;&gt;33</title>
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-<!-- 20&#45;&gt;35 -->
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-<title>20&#45;&gt;35</title>
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-<!-- 20&#45;&gt;37 -->
-<g id="edge60" class="edge">
-<title>20&#45;&gt;37</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M954.7823,-364.9656C961.3766,-356.6389 969.3679,-346.5481 976.7606,-337.2133"/>
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-<!-- 21&#45;&gt;20 -->
-<g id="edge35" class="edge">
-<title>21&#45;&gt;20</title>
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-</g>
-<!-- 22 -->
-<g id="node23" class="node">
-<title>22</title>
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-<text text-anchor="middle" x="1326.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_rename</text>
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-<!-- 22&#45;&gt;16 -->
-<g id="edge23" class="edge">
-<title>22&#45;&gt;16</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1274.9141,-218.0093C1272.0779,-217.2913 1269.2598,-216.6153 1266.5,-216 1160.4136,-192.3475 1034.566,-176.2829 962.0781,-168.1673"/>
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-<!-- 23&#45;&gt;22 -->
-<g id="edge37" class="edge">
-<title>23&#45;&gt;22</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1189.8339,-292.1629C1192.7499,-290.7269 1195.6712,-289.3193 1198.5,-288 1222.3119,-276.8941 1249.0366,-265.4617 1271.8831,-255.9918"/>
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-</g>
-<!-- 24 -->
-<g id="node25" class="node">
-<title>24</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M1487,-252C1487,-252 1408,-252 1408,-252 1402,-252 1396,-246 1396,-240 1396,-240 1396,-228 1396,-228 1396,-222 1402,-216 1408,-216 1408,-216 1487,-216 1487,-216 1493,-216 1499,-222 1499,-228 1499,-228 1499,-240 1499,-240 1499,-246 1493,-252 1487,-252"/>
-<text text-anchor="middle" x="1447.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_rename</text>
-</g>
-<!-- 24&#45;&gt;16 -->
-<g id="edge24" class="edge">
-<title>24&#45;&gt;16</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1395.9401,-217.8875C1393.0972,-217.2009 1390.2706,-216.565 1387.5,-216 1236.0278,-185.1105 1054.0874,-170.8211 962.0651,-165.1607"/>
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-</g>
-<!-- 25&#45;&gt;24 -->
-<g id="edge40" class="edge">
-<title>25&#45;&gt;24</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1269.7894,-297.3466C1300.7581,-286.3075 1348.9656,-269.1235 1387.3616,-255.4369"/>
-<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1388.6512,-258.693 1396.8955,-252.0385 1386.3008,-252.0994 1388.6512,-258.693"/>
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-<!-- 26 -->
-<g id="node27" class="node">
-<title>26</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M519,-252C519,-252 440,-252 440,-252 434,-252 428,-246 428,-240 428,-240 428,-228 428,-228 428,-222 434,-216 440,-216 440,-216 519,-216 519,-216 525,-216 531,-222 531,-228 531,-228 531,-240 531,-240 531,-246 525,-252 519,-252"/>
-<text text-anchor="middle" x="479.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_rename</text>
-</g>
-<!-- 26&#45;&gt;16 -->
-<g id="edge25" class="edge">
-<title>26&#45;&gt;16</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M531.2867,-218.1865C534.393,-217.4037 537.4812,-216.6672 540.5,-216 645.9118,-192.7034 770.8468,-176.5451 842.9651,-168.311"/>
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-<!-- 27&#45;&gt;26 -->
-<g id="edge43" class="edge">
-<title>27&#45;&gt;26</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M575.4323,-290.2752C558.3933,-280.28 537.0957,-267.7864 518.8987,-257.1118"/>
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-<!-- 28 -->
-<g id="node29" class="node">
-<title>28</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M640,-252C640,-252 561,-252 561,-252 555,-252 549,-246 549,-240 549,-240 549,-228 549,-228 549,-222 555,-216 561,-216 561,-216 640,-216 640,-216 646,-216 652,-222 652,-228 652,-228 652,-240 652,-240 652,-246 646,-252 640,-252"/>
-<text text-anchor="middle" x="600.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_rename</text>
-</g>
-<!-- 28&#45;&gt;16 -->
-<g id="edge26" class="edge">
-<title>28&#45;&gt;16</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M652.0176,-218.5362C655.2202,-217.6562 658.4004,-216.8036 661.5,-216 723.2401,-199.9928 794.6002,-184.3557 843.5551,-174.0633"/>
-<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="844.2732,-177.4889 853.3436,-172.0137 842.8386,-170.6375 844.2732,-177.4889"/>
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-<!-- 29&#45;&gt;28 -->
-<g id="edge46" class="edge">
-<title>29&#45;&gt;28</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M661.8228,-287.7476C651.5454,-278.7398 639.4277,-268.119 628.6898,-258.7076"/>
-<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="630.9882,-256.0679 621.1609,-252.1087 626.3742,-261.3321 630.9882,-256.0679"/>
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-<!-- 30 -->
-<g id="node31" class="node">
-<title>30</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M761,-252C761,-252 682,-252 682,-252 676,-252 670,-246 670,-240 670,-240 670,-228 670,-228 670,-222 676,-216 682,-216 682,-216 761,-216 761,-216 767,-216 773,-222 773,-228 773,-228 773,-240 773,-240 773,-246 767,-252 761,-252"/>
-<text text-anchor="middle" x="721.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_rename</text>
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-<!-- 30&#45;&gt;16 -->
-<g id="edge27" class="edge">
-<title>30&#45;&gt;16</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M767.1739,-215.8314C791.5968,-206.1162 821.8466,-194.0831 847.5484,-183.8592"/>
-<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="849.1563,-186.9864 857.1545,-180.038 846.569,-180.4821 849.1563,-186.9864"/>
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-<!-- 31&#45;&gt;30 -->
-<g id="edge49" class="edge">
-<title>31&#45;&gt;30</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M751.8007,-287.7476C747.1168,-279.4394 741.6595,-269.7591 736.677,-260.9211"/>
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-<!-- 32 -->
-<g id="node33" class="node">
-<title>32</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M882,-252C882,-252 803,-252 803,-252 797,-252 791,-246 791,-240 791,-240 791,-228 791,-228 791,-222 797,-216 803,-216 803,-216 882,-216 882,-216 888,-216 894,-222 894,-228 894,-228 894,-240 894,-240 894,-246 888,-252 882,-252"/>
-<text text-anchor="middle" x="842.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">iso_anno_rename</text>
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-<!-- 32&#45;&gt;16 -->
-<g id="edge28" class="edge">
-<title>32&#45;&gt;16</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M857.6405,-215.8314C864.6217,-207.454 873.0391,-197.3531 880.6876,-188.1749"/>
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-<!-- 33&#45;&gt;32 -->
-<g id="edge52" class="edge">
-<title>33&#45;&gt;32</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M842.5,-287.7476C842.5,-279.8767 842.5,-270.7743 842.5,-262.3232"/>
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-<g id="node35" class="node">
-<title>34</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M1003,-252C1003,-252 924,-252 924,-252 918,-252 912,-246 912,-240 912,-240 912,-228 912,-228 912,-222 918,-216 924,-216 924,-216 1003,-216 1003,-216 1009,-216 1015,-222 1015,-228 1015,-228 1015,-240 1015,-240 1015,-246 1009,-252 1003,-252"/>
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-<!-- 34&#45;&gt;16 -->
-<g id="edge29" class="edge">
-<title>34&#45;&gt;16</title>
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-<!-- 35&#45;&gt;34 -->
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-<title>35&#45;&gt;34</title>
-<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M933.1993,-287.7476C937.8832,-279.4394 943.3405,-269.7591 948.323,-260.9211"/>
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-<g id="node37" class="node">
-<title>36</title>
-<path fill="none" stroke="#56d89a" stroke-width="2" stroke-dasharray="5,2" d="M1124,-252C1124,-252 1045,-252 1045,-252 1039,-252 1033,-246 1033,-240 1033,-240 1033,-228 1033,-228 1033,-222 1039,-216 1045,-216 1045,-216 1124,-216 1124,-216 1130,-216 1136,-222 1136,-228 1136,-228 1136,-240 1136,-240 1136,-246 1130,-252 1124,-252"/>
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-<g id="edge30" class="edge">
-<title>36&#45;&gt;16</title>
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-<title>37&#45;&gt;36</title>
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-- 
GitLab