diff --git a/config/config_template.yaml b/config/config_template.yaml
index 3581c383e31f7e2f6fc2b04a98d55ab1ac566324..ffdafa848abe33d4e3d52092d4e099ea75f552fe 100644
--- a/config/config_template.yaml
+++ b/config/config_template.yaml
@@ -94,6 +94,7 @@ mir_list: ["miRNA", "miRNA_primary_transcript", "isomirs"]
 
 # Resources: miR annotations, chromosome name mappings
 # All of these are produced by the "prepare" workflow
-mirnas_anno: "path/to/mirna_filtered.bed"
+pre_mirnas_anno: "path/to/pre_mirna_filtered.bed"
+mirnas_anno: "path/to/mirna_mature_filtered.bed"
 isomirs_anno: "path/to/isomirs_annotation.bed"
 ...
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