diff --git a/README.md b/README.md index df1b0a288115083f233164541e143ebb08501138..24ad2aa09ff154514fe3420d0284971bd2fcd191 100644 --- a/README.md +++ b/README.md @@ -66,7 +66,7 @@ Execute the following command to run the test workflow on a Slurm-managed high-p Assuming that you are currently inside the repository's root directory... -* To run the pipeline with your own samples: +* To run the pipeline with your own input files: ```bash cd RUN_JOB ``` @@ -83,6 +83,8 @@ To start pipeline execution in Slurm: ``` After succesfully execution of the workflow results and logs outputs will be found in `results/` and `logs/` directories. +In `RUN_JOB1` folder you will find an exemple to run the pipeline with Human as organism. + > **NOTE:** Depending on the configuration of your Slurm installation or if using a different workflow manager, > you may need to adapt file `cluster.json` (located in root directory) and the arguments to options `--config` and `--cores` in file