From a7d899e9981623a3b72d10513eccb74a5bfb9f1b Mon Sep 17 00:00:00 2001 From: BIOPZ-Iborra de Toledo Paula <paula.iborradetoledo@unibas.ch> Date: Sun, 3 Jan 2021 23:35:31 +0100 Subject: [PATCH] Update README.md --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index df1b0a2..24ad2aa 100644 --- a/README.md +++ b/README.md @@ -66,7 +66,7 @@ Execute the following command to run the test workflow on a Slurm-managed high-p Assuming that you are currently inside the repository's root directory... -* To run the pipeline with your own samples: +* To run the pipeline with your own input files: ```bash cd RUN_JOB ``` @@ -83,6 +83,8 @@ To start pipeline execution in Slurm: ``` After succesfully execution of the workflow results and logs outputs will be found in `results/` and `logs/` directories. +In `RUN_JOB1` folder you will find an exemple to run the pipeline with Human as organism. + > **NOTE:** Depending on the configuration of your Slurm installation or if using a different workflow manager, > you may need to adapt file `cluster.json` (located in root directory) and the arguments to options `--config` and `--cores` in file -- GitLab