diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index fa8c2aaf9fee7dcf45ead436e251d51b959abe30..3040c3d333f88ef61dd97181445ab7efb1ffc949 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -8,6 +8,7 @@ before_script: test: script: - - bash test/test_workflow_local.sh - - bash test/test_dag.sh - - bash test/test_rule_graph.sh + - cd test + - bash test_workflow_local.sh + - bash test_dag.sh + - bash test_rule_graph.sh diff --git a/test/test_workflow_local.sh b/test/test_workflow_local.sh index a6fa5e2d91fd83c64047a9a1e8174f35a8e1bfa6..f267712c7c2bed0fd29bf91177f2d9e86c048eb0 100755 --- a/test/test_workflow_local.sh +++ b/test/test_workflow_local.sh @@ -24,7 +24,7 @@ snakemake \ --printshellcmds \ --snakefile="../snakemake/Snakefile" \ --use-singularity \ ---singularity-args "--no-home --bind ${PWD},/scicore/home/zavolan/devagy74/projects" \ +--singularity-args "--no-home --bind ${PWD},${PWD}/../images" \ --cores=4 \ --rerun-incomplete \ --configfile config.yaml \