From a83776c3d1405e2dc4b4f3841e22fa115369e37c Mon Sep 17 00:00:00 2001
From: devagy74 <paula.iborradetoledo@unibas.ch>
Date: Thu, 26 Mar 2020 12:53:12 +0100
Subject: [PATCH] Fixing bug
---
.gitlab-ci.yml | 7 ++++---
test/test_workflow_local.sh | 2 +-
2 files changed, 5 insertions(+), 4 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index fa8c2aa..3040c3d 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -8,6 +8,7 @@ before_script:
test:
script:
- - bash test/test_workflow_local.sh
- - bash test/test_dag.sh
- - bash test/test_rule_graph.sh
+ - cd test
+ - bash test_workflow_local.sh
+ - bash test_dag.sh
+ - bash test_rule_graph.sh
diff --git a/test/test_workflow_local.sh b/test/test_workflow_local.sh
index a6fa5e2..f267712 100755
--- a/test/test_workflow_local.sh
+++ b/test/test_workflow_local.sh
@@ -24,7 +24,7 @@ snakemake \
--printshellcmds \
--snakefile="../snakemake/Snakefile" \
--use-singularity \
---singularity-args "--no-home --bind ${PWD},/scicore/home/zavolan/devagy74/projects" \
+--singularity-args "--no-home --bind ${PWD},${PWD}/../images" \
--cores=4 \
--rerun-incomplete \
--configfile config.yaml \
--
GitLab