diff --git a/RUN_JOB/config.yaml b/RUN_JOB/config.yaml
index 81ff89a904a5a6102fb4075ce7529d62c951a13d..44ea45956e425de48a5f26a0f638269c897d4cf3 100644
--- a/RUN_JOB/config.yaml
+++ b/RUN_JOB/config.yaml
@@ -3,18 +3,18 @@
   ### Inputs 
   ##############################################################################
   # List of "organism/prefix"
-  organism: ["Homo_sapiens/GRCh38"]
+  organism: ["ORGANISM/PREFIX"]
 
   #################### PARAMETERS SPECIFIC TO ORGANISM #########################
   
-  Homo_sapiens/GRCh38: { 
-    genome_url: "ftp://ftp.ensembl.org/pub/release-99/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa.gz",
-    gtf_url: "ftp://ftp.ensembl.org/pub/release-99/gtf/homo_sapiens/Homo_sapiens.GRCh38.99.gtf.gz",
-    mirna_url: "ftp://mirbase.org/pub/mirbase/CURRENT/genomes/hsa.gff3",
+  ORGANISM/PREFIX: { 
+    genome_url: " ##### ",
+    gtf_url: " ##### ",
+    mirna_url: " ##### ",
     
     # Dictionary chromosome/contig name mappings between UCSC <-> Ensembl
     # Other organisms available at: https://github.com/dpryan79/ChromosomeMappings
-    map_chr_url: "https://raw.githubusercontent.com/dpryan79/ChromosomeMappings/master/GRCh38_UCSC2ensembl.txt",
+    map_chr_url: " ##### ",
     # Chromosome names mapping parameters:
     column: 1,          #column number from input file where to change chromosome name
     delimiter: "TAB"    #delimiter of the input file
diff --git a/RUN_JOB/run_workflow_local.sh b/RUN_JOB/run_workflow_local.sh
index 5762dada5b4c43ea52071fae7cc533e7747243fe..9194f41e0c96d01f2326c0fca1446938184313dd 100755
--- a/RUN_JOB/run_workflow_local.sh
+++ b/RUN_JOB/run_workflow_local.sh
@@ -35,12 +35,11 @@ snakemake \
     --printshellcmds \
     --snakefile="../workflow/Snakefile" \
     --configfile="config.yaml" \
-    --cluster-config="cluster.json" \
+    --jobscript="../scripts/jobscript.sh" \
     --use-singularity \
     --singularity-args "--bind ${PWD},${PWD}/../" \
     --cores=4 \
     --rerun-incomplete \
-    --configfile config.yaml \
     --verbose 
 
 # Snakemake report
diff --git a/RUN_JOB1/run_workflow_slurm.sh b/RUN_JOB1/run_workflow_slurm.sh
index e4f46f57ed8956b5e6642c5f85f089db25e57775..9a41218f5cba6fd3690e5a42b212122805948bb2 100755
--- a/RUN_JOB1/run_workflow_slurm.sh
+++ b/RUN_JOB1/run_workflow_slurm.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Tear down test environment
+# Tear down environment
 cleanup () {
     rc=$?
     rm -rf .snakemake/
diff --git a/test/test_dag.sh b/test/test_dag.sh
index b8ed111d80d10e77c66befc918c0a472d2ce24ae..cd0676f470996cbf53d5c8005e8bbcf026e30191 100755
--- a/test/test_dag.sh
+++ b/test/test_dag.sh
@@ -3,8 +3,6 @@
 # Tear down test environment
 cleanup () {
     rc=$?
-    #rm -rf .snakemake
-    #rm -rf logs/
     cd $user_dir
     echo "Exit status: $rc"
 }
diff --git a/test/test_rule_graph.sh b/test/test_rule_graph.sh
index 7bcaa3cf9e3b2c9437a7299a4976d5e149e244ee..3f4365b014692824e9ee58425c0c74ae2baa234c 100755
--- a/test/test_rule_graph.sh
+++ b/test/test_rule_graph.sh
@@ -3,8 +3,6 @@
 # Tear down test environment
 cleanup () {
     rc=$?
-    #rm -rf .snakemake
-    #rm -rf logs/
     cd $user_dir
     echo "Exit status: $rc"
 }