diff --git a/README.md b/README.md index 24ad2aa09ff154514fe3420d0284971bd2fcd191..1f9d096c4940a690fb1660df168d741c26667386 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,15 @@ # mir-prepare-annotation +NOTE: THIS IS AN OUTDATED VERSION OF THE ZAVOLAB MIRNA PIPELINE SUITE, IN +WHICH EACH PIPELINE LIVES INSIDE ITS OWN REPOSITORY. GIVEN THAT THE PIPELINES +ARE USUALLY RUN TOGETHER AND THEY SHARE A LOT OF THE SAME RESOURCES, WE HAVE +SINCE DECIDED TO HOST ALL PIPELINES IN THE SAME (THIS!) REPOSITORY, UNDER THE +DEFAULT BRANCH. YOU ARE STRONGLY RECOMMENDED TO USE THE NEW SETUP, AS THIS +BRANCH AND THE OTHER REPOSITORIES ARE NOT MAINTAINED ANYMORE. NOTE THAT THIS +PARTICULAR BRANCH WAS USED TO DEVELOP AN ADVANCED VERSION OF THE PIPELINE +CAPABLE OF PROCESSING MICRORNA ANNOTATIONS AND PREPARING CORRESPONDING ISOMIR +ANNOATIONS. + [Snakemake] workflow for download and prepare the necessary files for smallRNA-seq related pipelines. The scheme below is a visual representation of an example run of the