From c6045489f3d7bb6f25111c498496c6039dad48b6 Mon Sep 17 00:00:00 2001
From: Alex Kanitz <alexander.kanitz@alumni.ethz.ch>
Date: Tue, 28 Jun 2022 03:09:04 +0200
Subject: [PATCH] docs: depreciation notice

---
 README.md | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/README.md b/README.md
index 24ad2aa..1f9d096 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,15 @@
 # mir-prepare-annotation
 
+NOTE: THIS IS AN OUTDATED VERSION OF THE ZAVOLAB MIRNA PIPELINE SUITE, IN
+WHICH EACH PIPELINE LIVES INSIDE ITS OWN REPOSITORY. GIVEN THAT THE PIPELINES
+ARE USUALLY RUN TOGETHER AND THEY SHARE A LOT OF THE SAME RESOURCES, WE HAVE
+SINCE DECIDED TO HOST ALL PIPELINES IN THE SAME (THIS!) REPOSITORY, UNDER THE
+DEFAULT BRANCH. YOU ARE STRONGLY RECOMMENDED TO USE THE NEW SETUP, AS THIS
+BRANCH AND THE OTHER REPOSITORIES ARE NOT MAINTAINED ANYMORE. NOTE THAT THIS
+PARTICULAR BRANCH WAS USED TO DEVELOP AN ADVANCED VERSION OF THE PIPELINE
+CAPABLE OF PROCESSING MICRORNA ANNOTATIONS AND PREPARING CORRESPONDING ISOMIR
+ANNOATIONS.
+
 [Snakemake] workflow for download and prepare the necessary files for smallRNA-seq related pipelines.
 
 The scheme below is a visual representation of an example run of the
-- 
GitLab