From f5f1a8246e191dd41141181f35ed7ee3b78cb0b2 Mon Sep 17 00:00:00 2001
From: "anastasiya.boersch@unibas.ch" <anastasiya.boersch@unibas.ch>
Date: Fri, 6 Aug 2021 10:11:55 +0200
Subject: [PATCH] Correct the singularity argument
---
test/test_workflow_local.sh | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/test/test_workflow_local.sh b/test/test_workflow_local.sh
index 238c363..69b9942 100755
--- a/test/test_workflow_local.sh
+++ b/test/test_workflow_local.sh
@@ -24,7 +24,7 @@ snakemake \
--printshellcmds \
--snakefile="../snakemake/Snakefile" \
--use-singularity \
---singularity-args "--bind ${PWD}/../images" \
+--singularity-args "--bind ${PWD}/../" \
--cores=4 \
--rerun-incomplete \
--configfile config.yaml \
@@ -39,4 +39,4 @@ md5sum --check "expected_output.md5"
# find results/ \
# -type f \
# > expected_output.files;
-# md5sum $(cat expected_output.files) > expected_output.md5
\ No newline at end of file
+# md5sum $(cat expected_output.files) > expected_output.md5
--
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