Merge requests · zavolan_group / pipelines / mirflowz

docs: add GitHub migration note

!28 · created Mar 07, 2023 by Alex Kanitz
- Merged
updated Mar 07, 2023
chore: remove template RUNS/ directory

!27 · created Mar 04, 2023 by Iris Mestres Pascual
enhancement
- Merged
updated Mar 04, 2023
feat: simplify config

!25 · created Feb 28, 2023 by Iris Mestres Pascual
- Merged
- 13
updated Mar 03, 2023
chore: remove unused config file

!24 · created Feb 20, 2023 by Iris Mestres Pascual
- Merged
updated Feb 20, 2023
refactor: read samples from table

!22 · created Jan 20, 2023 by Iris Mestres Pascual Reevaluate quantification design
Doing enhancement
- Merged
- Approved
updated Jan 22, 2023
refactor: merge prepare, map & quantify workflows

!20 · created Jan 17, 2023 by Iris Mestres Pascual Reevaluate quantification design
To Do refactor
- Merged
updated Jan 20, 2023
ci: fix outdated environment name

!21 · created Jan 19, 2023 by Alex Kanitz
- Merged
updated Jan 19, 2023
fix: increase memory for genome mapping

!19 · created Jul 28, 2022 by MihaelaZavolan
- Merged
- Approved
updated Jul 28, 2022
docs: add/extend input hints

!18 · created Jul 28, 2022 by MihaelaZavolan
- Merged
- Approved
updated Jul 28, 2022
Update RUNS/JOB/quantify/config.yaml

!17 · created Jul 27, 2022 by MihaelaZavolan
- Merged
- Approved
updated Jul 27, 2022
test: fix Slurm submission

!16 · created Jul 08, 2022 by Alex Kanitz
updated Jul 08, 2022
fix: update job script

!15 · created Jul 08, 2022 by Alex Kanitz
updated Jul 08, 2022
fix(docs): fix Conda environment name

!14 · created Jul 08, 2022 by Alex Kanitz
updated Jul 08, 2022
feat: merge quantification pipeline

!13 · created Jul 08, 2022 by Alex Kanitz
updated Jul 08, 2022
feat: merge mapping workflow

!12 · created Jun 28, 2022 by Alex Kanitz
- Merged
updated Jul 07, 2022
docs: include description of pipeline config

!11 · created Jun 28, 2022 by Alex Kanitz
- Merged
updated Jun 28, 2022
feat: merge updated workflow with miR processing

!10 · created Jun 28, 2022 by Alex Kanitz
- Merged
updated Jun 28, 2022
refactor: prepare for merging pipelines

!9 · created Jun 27, 2022 by Alex Kanitz
- Merged
updated Jun 27, 2022
refactor: align with mapping pipeline

!8 · created Jun 27, 2022 by Alex Kanitz
- Merged
updated Jun 27, 2022
docs: clarify expected source of public resource

!7 · created Jun 27, 2022 by Alex Kanitz
- Merged
updated Jun 27, 2022