From 53bf437207846b61f963a4b830f24ca81887bed8 Mon Sep 17 00:00:00 2001
From: BIOPZ-Gypas Foivos <foivos.gypas@unibas.ch>
Date: Thu, 10 Jan 2019 11:55:01 +0100
Subject: [PATCH] Updated run_snakefile.sh
---
snakemake/prepare_annotation/run_snakefile.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/snakemake/prepare_annotation/run_snakefile.sh b/snakemake/prepare_annotation/run_snakefile.sh
index 7a004f2..ceec8a8 100755
--- a/snakemake/prepare_annotation/run_snakefile.sh
+++ b/snakemake/prepare_annotation/run_snakefile.sh
@@ -5,7 +5,7 @@ mkdir -p logs/local_log
snakemake \
--cluster-config cluster.json \
---cluster "sbatch --cpus-per-task={cluster.threads} --mem={cluster.mem} --qos={cluster.queue} --time={cluster.time} --output={params.cluster_log}-%j-%N -p scicore" \
+--cluster "sbatch --cpus-per-task={cluster.threads} --mem={cluster.mem} --qos={cluster.queue} --time={cluster.time} --job-name={cluster.name} -o {cluster.out} -p scicore" \
--cores 256 \
-p \
--rerun-incomplete \
--
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