diff --git a/README.md b/README.md
index 1fa6d971b79a060ede78f5e636e7aae5f8e4de50..fd362a4ae2fe9be4c98b22af1203283dc21a55e3 100644
--- a/README.md
+++ b/README.md
@@ -63,4 +63,9 @@ git clone ssh://git@git.scicore.unibas.ch:2222/AnnotationPipelines/riboseq_pipel
 
 ## Configure pipeline
 
-ToDo
+Go in the snakemake directory
+```
+cd riboseq_pipeline/snakemake
+```
+
+```