From 88f36c60fe291964dccc4e92eed8c90104a8f88b Mon Sep 17 00:00:00 2001
From: BIOPZ-Gypas Foivos <foivos.gypas@unibas.ch>
Date: Fri, 25 Jan 2019 11:52:41 +0100
Subject: [PATCH] Fixed typo in the rule read_length_histogram that caused
crashing the pipeline.
---
snakemake/process_data/Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/snakemake/process_data/Snakefile b/snakemake/process_data/Snakefile
index 5e714a1..ba16c62 100644
--- a/snakemake/process_data/Snakefile
+++ b/snakemake/process_data/Snakefile
@@ -244,7 +244,7 @@ rule read_length_histogram:
shell:
"(python scripts/plot_read_lengths.py \
--sam {input.sam} \
- --outdir {params.dir}) & > {log}"
+ --outdir {params.dir}) &> {log}"
################################################################################
### Count reads
--
GitLab