From 0b2cb762afd76351c1b2a90122975eb9e1c3289b Mon Sep 17 00:00:00 2001
From: "kathleen.moriarty" <kathleen.moriarty@unibas.ch>
Date: Mon, 3 Jan 2022 14:16:58 +0100
Subject: [PATCH] fix flake8 problems
---
src/read_sequencing/cli.py | 7 +++----
1 file changed, 3 insertions(+), 4 deletions(-)
diff --git a/src/read_sequencing/cli.py b/src/read_sequencing/cli.py
index 8451c47..8f7aadc 100644
--- a/src/read_sequencing/cli.py
+++ b/src/read_sequencing/cli.py
@@ -1,3 +1,5 @@
+"""Command Line Interface."""
+
import argparse
from read_sequencing import read_sequencing
@@ -5,10 +7,8 @@ from read_sequencing import read_sequencing
def parse_args() -> argparse.Namespace:
"""Parse CLI arguments.
- Returns:
- Parsed CLI arguments.
+ Returns: Parsed CLI arguments.
"""
-
# initiate parser
parser = argparse.ArgumentParser(description='Simulate the Sequencing of Reads')
@@ -38,7 +38,6 @@ def main() -> None:
Interprets the arguments from the commandline,
Runs the functions read_sequencing.
"""
-
args = parse_args()
read_sequencing(frag_file_name=args.frag_file_name,
output_file_name=args.output_file_name,
--
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