From 2cee53f8fbfed4af0aa9fb19fce383b5fff0fff9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Boris=20Juri=C4=8D?= <499542@mail.muni.cz>
Date: Fri, 1 Apr 2022 12:35:37 +0000
Subject: [PATCH] Update src/poly_a.py
---
src/poly_a.py | 11 +++++------
1 file changed, 5 insertions(+), 6 deletions(-)
diff --git a/src/poly_a.py b/src/poly_a.py
index b045744..6ca8baf 100644
--- a/src/poly_a.py
+++ b/src/poly_a.py
@@ -72,13 +72,12 @@ def generate_poly_a(
def main():
- """Append poly A tails to fasta sequences and write to file
-
- This function iterates over `input` fasta sequences from a specified file,
- appends tails of given `length` and composition specified by `weights`,
+ """Append poly A tails to fasta sequences and write to file.
+
+ This function iterates over `input` fasta sequences from a specified file,
+ appends tails of given `length` and composition specified by `weights`,
and writes them to file specified as `output`.
"""
-
parser = argparse.ArgumentParser(description='Process some integers.')
parser.add_argument('-i', '--input', required=True,
help='Fasta file to add tails to')
@@ -91,7 +90,7 @@ def main():
args = parser.parse_args()
new_records = []
- for fasta in SeqIO.parse(open(args.input),'fasta'):
+ for fasta in SeqIO.parse(open(args.input), 'fasta'):
new_seq = fasta.seq + Seq(generate_poly_a(args.length, args.weights))
new_records.append(SeqRecord(new_seq, id=fasta.id, description=fasta.description))
SeqIO.write(new_records, args.output, "fasta")
--
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