From 2e371c17aed948f911a5827a11f15c3a30afe42d Mon Sep 17 00:00:00 2001
From: Melvin Alappat <melvin.alappat@unibas.ch>
Date: Thu, 30 Dec 2021 12:24:06 +0100
Subject: [PATCH] add: Nextflow process
---
src/PrimingProb_process.nf | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
create mode 100644 src/PrimingProb_process.nf
diff --git a/src/PrimingProb_process.nf b/src/PrimingProb_process.nf
new file mode 100644
index 0000000..98f649c
--- /dev/null
+++ b/src/PrimingProb_process.nf
@@ -0,0 +1,32 @@
+#!/usr/bin/env nextflow
+
+params.transcripts = "/Users/kegany44/Master/PythonCourse/Issue_4/scrna-seq-simulation/inputs/transcript.fasta"
+params.primers = "/Users/kegany44/Master/PythonCourse/Issue_4/scrna-seq-simulation/inputs/primer.fasta"
+
+
+log.info """\
+ R I B L A S T P I P E L I N E
+ ===================================
+ transcripts: ${params.transcripts}
+ primers : ${params.primers}
+ """
+ .stripIndent()
+
+process RIblast_interaction {
+
+ input:
+ path transcript from params.transcripts
+ path primer from params.primers
+
+
+ script:
+ """
+ RIblast db -i $transcript -o test_db
+ RIblast ris -i $primer -o Energies.txt -d test_db
+ """
+}
+
+
+
+
+
--
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