From 36474d3f0e0e32fd3aa700c8634fa1231275f36b Mon Sep 17 00:00:00 2001
From: "kathleen.moriarty" <kathleen.moriarty@unibas.ch>
Date: Wed, 8 Dec 2021 21:43:53 +0100
Subject: [PATCH] added: test for length of read
---
tests/test_read_sequence.py | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/tests/test_read_sequence.py b/tests/test_read_sequence.py
index 3b1021b..29bfa30 100644
--- a/tests/test_read_sequence.py
+++ b/tests/test_read_sequence.py
@@ -11,12 +11,13 @@ from src.read_sequencing import read_sequencing
def test_read_sequencing(tmpdir):
- """Tests the correct number of reads were generated."""
+ """Tests the correct number of reads were generated and the correct length of reads."""
read_sequencing(
frag_file_name=Path.cwd() / 'tests/resources/test_terminal_fragments.txt',
- num_reads=80,
- read_len=10,
+ num_reads=10,
+ read_len=80,
output_file_name=tmpdir / 'reads.txt'
)
df_out = pd.read_table(tmpdir / 'reads.txt', header=None)
- assert df_out.shape[0] == 80 * 2
+ assert df_out.shape[0] == 10 * 2
+ assert len(df_out.iloc[lambda x: x.index % 2 == 1, 0][1]) == 80
--
GitLab