diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 14897dcf4141c951a447bf55ab87ea5eb62aa87d..122abbda77f639ec086a3e7328a58f5f627dec28 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,36 +1,8 @@ stages: - - qc - test -qc_1: - image: python:3.9-slim-buster - stage: qc - - before_script: - - pip install -r requirements.txt - - pip install -r requirements_dev.txt - - pip install -e . - - script: - - flake8 src/ setup.py - - coverage run --source src/ -m pytest - - coverage report --fail-under=100 - - mypy src/ - -test_1: - image: python:3.9-slim-buster - stage: test - - before_script: - - pip install -r requirements.txt - - pip install -r requirements_dev.txt - - pip install -e . - - script: - - python -m pytest - -test_2: +test_nextflow: image: nextflow/nextflow:21.10.6 stage: test script: