diff --git a/src/primingprob/cli_priming_prob.py b/src/primingprob/cli_priming_prob.py index d737e1c8053e40703677470077f72969b3b77623..6bbac4e9967eaea53c97722be194cfee7db52244 100644 --- a/src/primingprob/cli_priming_prob.py +++ b/src/primingprob/cli_priming_prob.py @@ -4,7 +4,7 @@ import logging import os from pathlib import Path import sys -from src.primingprob.priming_prob import Probability as Pbt # type: ignore +from src.primingprob.priming_prob import inter_para, inter_prob # type: ignore def parse_args(): # Input arguments @@ -50,8 +50,8 @@ def main(): if os.path.exists(args.input_file) and os.path.exists(args.fasta_file): # pragma: no cover logging.basicConfig(level=logging.INFO, format='%(message)s') logging.info("Starting calculating the priming probabilities...") - paradata = Pbt.inter_para(args.input_file) - Pbt.inter_prob(paradata, args.fasta_file, args.output_file) + paradata = inter_para(args.input_file) + inter_prob(paradata, args.fasta_file, args.output_file) logging.info("Calculations are done...") logging.info(f"Potential Priming Sites are saved in {args.output_file}")