diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 24e6cbf1898ff6c5f1fd5827ebf03ee4eee1a8fd..c71abdd8ef3c83cb0fcc074eb7f4babd91917c4e 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -29,3 +29,14 @@ test_1:
   script:
     - python -m pytest
 
+test_trascritps:
+  stage: transcipts
+
+  before_script:
+    -java -version
+    -apt-get install bedtools
+    -curl -s https://get.nextflow.io | bash && chmod +x nextflow 
+    -echo 'export PATH=$PATH:'$(pwd) >> ~/.bashrc && source ~/.bashrc
+  
+  script:
+    -nextflow /src/generate_transcripts.nf