From 4e6f903046e1d53986f43b3d6fe7f9932b56026d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Boris=20Juri=C4=8D?= <499542@mail.muni.cz>
Date: Fri, 1 Apr 2022 12:14:29 +0000
Subject: [PATCH] Update .gitlab-ci.yml
---
.gitlab-ci.yml | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 24e6cbf..c71abdd 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -29,3 +29,14 @@ test_1:
script:
- python -m pytest
+test_trascritps:
+ stage: transcipts
+
+ before_script:
+ -java -version
+ -apt-get install bedtools
+ -curl -s https://get.nextflow.io | bash && chmod +x nextflow
+ -echo 'export PATH=$PATH:'$(pwd) >> ~/.bashrc && source ~/.bashrc
+
+ script:
+ -nextflow /src/generate_transcripts.nf
--
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