diff --git a/src/RIblast_process2.nf b/src/RIblast_process2.nf new file mode 100644 index 0000000000000000000000000000000000000000..66f1017b11f5adc3bb946cbcdb3aa1b5d5bfb35b --- /dev/null +++ b/src/RIblast_process2.nf @@ -0,0 +1,25 @@ +#!/usr/bin/env nextflow + +params.transcripts = "$baseDir/Docker-Files/transcript3.fasta" +params.primers = "$baseDir/Docker-Files/primer.fasta" + +log.info """\ + R I B L A S T P I P E L I N E + =================================== + transcripts: ${params.transcripts} + primers : ${params.primers} + """ + .stripIndent() + +process RIblast_interaction { + + input: + path transcript from params.transcripts + path primer from params.primers + + script: + """ + RIblast db -i $transcript -o /RIblast/test_db + RIblast ris -i $primer -o /RIblast/Energies.txt -d /RIblast/test_db + """ +}