From aa8c35fb75bc9cc2336e76d151a51a59a0d9d2dc Mon Sep 17 00:00:00 2001
From: RTS1997 <reto.tschannen@unibas.ch>
Date: Mon, 20 Dec 2021 18:12:42 +0100
Subject: [PATCH] chore:try5 fixing flake8 errors
---
src/meanvariancefunction.py | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/src/meanvariancefunction.py b/src/meanvariancefunction.py
index c6f31d5..ff7bd96 100644
--- a/src/meanvariancefunction.py
+++ b/src/meanvariancefunction.py
@@ -11,13 +11,14 @@ import matplotlib.pyplot as plt
def mean_variance(filepath: str, output_dir: str = os.getcwd()+'/') -> str:
"""For observed gene counts calcuclate mean and var.
- ! At the moment the function does not check the import files format,
+ At the moment the function does not check the import files format,
be careful, and only add text files in the format
- geneid number_of_transcipts !
+ geneid number_of_transcipts.
Args:
directory with text files of gene expression
counts in individual cells.
+
Returns:
1. Path to Csv-formatted table with GeneID, Mean, Variance of the
count, and Scatterplot of mean vs variance for all genes.
@@ -26,8 +27,8 @@ def mean_variance(filepath: str, output_dir: str = os.getcwd()+'/') -> str:
ValueError: If there are no files in directory
"""
- files = [file for file in glob(filepath)]
# Open each file in the input directory, raises error if no file is found
+ files = [file for file in glob(filepath)]
if len(files) == 0:
raise ValueError('No files in directory:', filepath)
--
GitLab