From ce67ac87c09db28cd6e3e8c4ae6a22c2659fc7cd Mon Sep 17 00:00:00 2001
From: "kathleen.moriarty" <kathleen.moriarty@unibas.ch>
Date: Mon, 3 Jan 2022 14:21:07 +0100
Subject: [PATCH] fix mypy problems
---
src/read_sequencing/cli.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/read_sequencing/cli.py b/src/read_sequencing/cli.py
index 8f7aadc..60669e4 100644
--- a/src/read_sequencing/cli.py
+++ b/src/read_sequencing/cli.py
@@ -1,7 +1,7 @@
"""Command Line Interface."""
import argparse
-from read_sequencing import read_sequencing
+from src.read_sequencing import read_sequencing
def parse_args() -> argparse.Namespace:
@@ -39,7 +39,7 @@ def main() -> None:
Runs the functions read_sequencing.
"""
args = parse_args()
- read_sequencing(frag_file_name=args.frag_file_name,
+ read_sequencing.read_sequencing(frag_file_name=args.frag_file_name,
output_file_name=args.output_file_name,
num_reads=args.num_reads,
read_len=args.read_len)
--
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